Citrus Sinensis ID: 023887
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | 2.2.26 [Sep-21-2011] | |||||||
| Q3MG79 | 370 | Putative ribosome biogene | yes | no | 0.778 | 0.581 | 0.470 | 3e-54 | |
| Q8YUA3 | 370 | Putative ribosome biogene | yes | no | 0.768 | 0.572 | 0.472 | 1e-53 | |
| B0JW21 | 358 | Putative ribosome biogene | yes | no | 0.804 | 0.620 | 0.444 | 7e-51 | |
| Q8DK79 | 348 | Putative ribosome biogene | yes | no | 0.789 | 0.626 | 0.419 | 3e-45 | |
| P52640 | 369 | Putative ribosome biogene | N/A | no | 0.800 | 0.598 | 0.403 | 1e-42 | |
| Q7VEJ4 | 309 | Putative ribosome biogene | yes | no | 0.786 | 0.702 | 0.381 | 1e-37 | |
| Q0IE58 | 304 | Putative ribosome biogene | yes | no | 0.786 | 0.713 | 0.402 | 5e-37 | |
| Q9K9Z1 | 294 | Putative ribosome biogene | yes | no | 0.771 | 0.724 | 0.365 | 1e-35 | |
| A6TRW0 | 292 | Putative ribosome biogene | yes | no | 0.771 | 0.729 | 0.374 | 3e-35 | |
| Q7UA74 | 299 | Putative ribosome biogene | yes | no | 0.786 | 0.725 | 0.394 | 1e-34 |
| >sp|Q3MG79|RSGA_ANAVT Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q8YUA3|RSGA1_NOSS1 Putative ribosome biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rsgA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 23/235 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|B0JW21|RSGA_MICAN Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 150/245 (61%), Gaps = 23/245 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCLPEELTFYF 247
Query: 261 PEVCA 265
PEV A
Sbjct: 248 PEVRA 252
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q8DK79|RSGA_THEEB Putative ribosome biogenesis GTPase RsgA OS=Thermosynechococcus elongatus (strain BP-1) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 133/241 (55%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 V 263
+
Sbjct: 246 I 246
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P52640|RSGA_SYNY3 Putative ribosome biogenesis GTPase RsgA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 143/260 (55%), Gaps = 39/260 (15%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEV 263
NQP L V L FPE
Sbjct: 244 NQPD-LAVEPAQLIHLFPEA 262
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7VEJ4|RSGA_PROMA Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 134/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 V 263
+
Sbjct: 263 L 263
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q0IE58|RSGA_SYNS3 Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9311) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 V 263
+
Sbjct: 253 L 253
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain CC9311) (taxid: 64471) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9K9Z1|RSGA_BACHD Putative ribosome biogenesis GTPase RsgA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD+VV + + D G + + +R E+L PP+ANVD +L+FS
Sbjct: 25 CRGRGNFRNRNIKPLVGDEVVFEAENKTD--GYVLEIMERKNELLRPPIANVDRAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E+ GI + ++K++L+ EE L T K + + GY+
Sbjct: 83 AAEPTFSPLLLDRFLVHVEANGIEPLIVISKIDLLTEEELETIKQYRNDYEQLGYKVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +LGLD++ + D +VI G SGVGKSSL+NA+ P L
Sbjct: 143 STIEQLGLDAIRKEFDDHVSVIAGQSGVGKSSLLNAIN----------------PAL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D ++S+ GRGKHTTRHV L+P G G +ADTPGF+ + + + L+ FPE
Sbjct: 184 ---DIETNQISSHLGRGKHTTRHVELIPF-GSGLVADTPGFSSLDFIDMEPEELSHYFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|A6TRW0|RSGA_ALKMQ Putative ribosome biogenesis GTPase RsgA OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 131/235 (55%), Gaps = 22/235 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +L+K K LVGD V + D +++GMI+++F R TE++ P VANVD ++++FS
Sbjct: 25 CKGRGILRKKKLTPLVGDYVEITVTDEDNKKGMIDDIFPRKTELIRPTVANVDQVIVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ QP L FL+ AE+ I + + LNK++LV E + GY + S
Sbjct: 85 VTQPDPHLSLLDHFLILAETQNIDVVICLNKLDLVQREDVAELVGIYEKVGYPVILTSQN 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+GL+ L + LR +TTV GPSGVGKS+L+N R PH +
Sbjct: 145 DSIGLEQLEKVLRGKTTVFAGPSGVGKSTLLN--RILPHVT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ GE+S+K RGKHTTRHV L+ L G++ DTPGF+ ++ + ++ LA F
Sbjct: 184 -LQTGELSSKIARGKHTTRHVELISLETEGWVVDTPGFSSLNIDFLKEEELADYF 237
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q7UA74|RSGA_SYNPX Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp. (strain WH8102) GN=rsgA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L + L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPDDPSE-LGMLFPE 247
Query: 263 V 263
+
Sbjct: 248 L 248
|
May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. Synechococcus sp. (strain WH8102) (taxid: 84588) EC: 3 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | ||||||
| 255547744 | 500 | GTP binding protein, putative [Ricinus c | 0.952 | 0.526 | 0.821 | 1e-124 | |
| 449452897 | 504 | PREDICTED: putative ribosome biogenesis | 0.880 | 0.482 | 0.855 | 1e-120 | |
| 357463041 | 471 | hypothetical protein MTR_3g085550 [Medic | 0.949 | 0.556 | 0.795 | 1e-120 | |
| 224137508 | 385 | predicted protein [Populus trichocarpa] | 0.952 | 0.683 | 0.787 | 1e-117 | |
| 356540154 | 475 | PREDICTED: putative ribosome biogenesis | 0.927 | 0.538 | 0.803 | 1e-116 | |
| 356566415 | 473 | PREDICTED: putative ribosome biogenesis | 0.927 | 0.541 | 0.795 | 1e-116 | |
| 42563017 | 433 | Minichromosome maintenance (MCM2/3/5) pr | 0.949 | 0.605 | 0.766 | 1e-111 | |
| 225425472 | 491 | PREDICTED: putative ribosome biogenesis | 0.887 | 0.498 | 0.796 | 1e-109 | |
| 297738426 | 400 | unnamed protein product [Vitis vinifera] | 0.887 | 0.612 | 0.796 | 1e-109 | |
| 3176667 | 450 | Similar to hypothetical 41.9KD protein g | 0.949 | 0.582 | 0.720 | 1e-108 |
| >gi|255547744|ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis] gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/269 (82%), Positives = 241/269 (89%), Gaps = 6/269 (2%)
Query: 1 MRVIVQQSEPSRTS------DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD 54
MRVI+Q PS + + + + GVELLCVVRA+LKKI+RRVLVGDKVVVGSIDWVD
Sbjct: 106 MRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVLVGDKVVVGSIDWVD 165
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
RRGMIENVFQRSTEILDPPVANVDHLL+LFSMDQPK+EPFALTRFLVEAESTGIPLTLAL
Sbjct: 166 RRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFLVEAESTGIPLTLAL 225
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NK ELVDEE L WKSRL +WGYEPLFCSVESKLGLDSL LR+QTTVIVGPSGVGKSS
Sbjct: 226 NKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQTTVIVGPSGVGKSS 285
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINALR+ P A D A+ DNWF+P+LGSKWFE+QRVGEVST+SGRGKHTTR+VSLLPLS G
Sbjct: 286 LINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGKHTTRNVSLLPLSAG 345
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GYLADTPGFNQPSLLKVTKQSLA+TFPE+
Sbjct: 346 GYLADTPGFNQPSLLKVTKQSLAETFPEI 374
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452897|ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/243 (85%), Positives = 228/243 (93%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GVELLCVV+A+LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS+EILDPPVANVDHL
Sbjct: 138 GVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHL 197
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
L+LFSMDQP+LEPF LTRFLVEAESTGIPLTL LNK+ELVDEE L +WKSRL +WGY+PL
Sbjct: 198 LVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPL 257
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
FCSV++ GLDSL LRDQTTVIVGPSGVGKSSLINALR+S A+DA+D DNWF+PILG
Sbjct: 258 FCSVQTGAGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNSNRATDASDTDNWFDPILG 317
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
SKWFE+QRV EVST+SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL+K+TKQSLAQ F
Sbjct: 318 SKWFEEQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAF 377
Query: 261 PEV 263
PE+
Sbjct: 378 PEI 380
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463041|ref|XP_003601802.1| hypothetical protein MTR_3g085550 [Medicago truncatula] gi|355490850|gb|AES72053.1| hypothetical protein MTR_3g085550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 237/264 (89%), Gaps = 2/264 (0%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD+E +++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINAL
Sbjct: 205 VDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINAL 264
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLAD
Sbjct: 265 RSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLAD 324
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 325 TPGFNQPSLLKVTKQSLAQTFPEI 348
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137508|ref|XP_002322575.1| predicted protein [Populus trichocarpa] gi|222867205|gb|EEF04336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/268 (78%), Positives = 240/268 (89%), Gaps = 5/268 (1%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV PSR+ + D K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 1 MRVIVTAG-PSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 59
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS+EILDPPVANVDHLL+LFS++QP+L+ F LTRFL+EAESTGIP+TLALNKVE
Sbjct: 60 IENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRFLIEAESTGIPITLALNKVE 119
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD+EVL+ W SRL +WGYEPLFCSV+SK+GLD+L LRDQTTVI+GPSGVGKSSLINA
Sbjct: 120 LVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINA 179
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ D A DNWF+PI+GSKWFEDQRVGEVST++GRGKHTTR+VSLLPL GGGY+A
Sbjct: 180 LRNKPNSHDEA--DNWFDPIMGSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVA 237
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
DTPGF+QPSLLKVTKQSLAQ FPE+ V
Sbjct: 238 DTPGFSQPSLLKVTKQSLAQYFPEIRTV 265
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540154|ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/264 (80%), Positives = 234/264 (88%), Gaps = 8/264 (3%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 97 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 151
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++EILDPPVANVD LL+LFS++ PK EPF LTRFLVEAESTGIPL LALNK EL
Sbjct: 152 ENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTEL 211
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 212 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINAL 271
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P SDAA+ DNWFEPILGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 272 RSNP--SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 329
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 330 TPGFNQPSLLKVTKQSLAQTFPEI 353
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566415|ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 235/264 (89%), Gaps = 8/264 (3%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 93 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 147
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVF R++EILDPPVANVD LL+LFS++QPK EPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 148 ENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTEL 207
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 208 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINAL 267
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P S+AA+ +NWFEP+LGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 268 RSNP--SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 325
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 326 TPGFNQPSLLKVTKQSLAQTFPEI 349
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563017|ref|NP_176911.2| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] gi|66792692|gb|AAY56448.1| At1g67440 [Arabidopsis thaliana] gi|332196525|gb|AEE34646.1| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/266 (76%), Positives = 227/266 (85%), Gaps = 4/266 (1%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEV 263
ADTPGFNQPSLLKVTK SLA FPE+
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEI 308
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425472|ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/246 (79%), Positives = 221/246 (89%), Gaps = 1/246 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 118 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 177
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 178 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 237
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 238 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 297
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 298 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 357
Query: 258 QTFPEV 263
QTFPE+
Sbjct: 358 QTFPEI 363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738426|emb|CBI27627.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/246 (79%), Positives = 221/246 (89%), Gaps = 1/246 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 27 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 86
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 87 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 147 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 206
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 207 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 266
Query: 258 QTFPEV 263
QTFPE+
Sbjct: 267 QTFPEI 272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3176667|gb|AAC18791.1| Similar to hypothetical 41.9KD protein gb|1001369 from sequence of Synechocystis sp. gb|D64006 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/283 (72%), Positives = 227/283 (80%), Gaps = 21/283 (7%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPI-----------------LGSKWFEDQRVGEVSTKSGRGK 220
LRS+ H + +NWFEP+ LG+KWF+DQRVGEVS++SGRGK
Sbjct: 224 VLRSN-HGGGVVEDENWFEPLKFCLPDSYELSFCDIQMLGNKWFDDQRVGEVSSRSGRGK 282
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
HTTR+VSLLP+S GGYLADTPGFNQPSLLKVTK SLA FPE+
Sbjct: 283 HTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEI 325
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 276 | ||||||
| TAIR|locus:2197618 | 433 | emb1688 "embryo defective 1688 | 0.949 | 0.605 | 0.774 | 5.3e-104 | |
| UNIPROTKB|A8IGD6 | 308 | CHLREDRAFT_49443 "Predicted pr | 0.583 | 0.522 | 0.472 | 1.1e-48 | |
| UNIPROTKB|Q81WH7 | 293 | rsgA "Putative ribosome biogen | 0.554 | 0.522 | 0.373 | 3e-33 | |
| TIGR_CMR|BA_3999 | 293 | BA_3999 "conserved hypothetica | 0.554 | 0.522 | 0.373 | 3e-33 | |
| UNIPROTKB|Q3AC25 | 290 | rsgA "Putative ribosome biogen | 0.561 | 0.534 | 0.329 | 1.8e-31 | |
| TIGR_CMR|CHY_1477 | 290 | CHY_1477 "GTP-binding protein" | 0.561 | 0.534 | 0.329 | 1.8e-31 | |
| UNIPROTKB|Q9X242 | 295 | rsgA "Putative ribosome biogen | 0.583 | 0.545 | 0.309 | 1.2e-28 | |
| TIGR_CMR|VC_0340 | 387 | VC_0340 "ribosome small subuni | 0.576 | 0.410 | 0.341 | 1.3e-23 | |
| UNIPROTKB|Q71YJ7 | 291 | rsgA1 "Putative ribosome bioge | 0.550 | 0.522 | 0.320 | 8.5e-23 | |
| UNIPROTKB|Q8EJ79 | 354 | rsgA "Putative ribosome biogen | 0.543 | 0.423 | 0.329 | 5.7e-19 |
| TAIR|locus:2197618 emb1688 "embryo defective 1688" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 206/266 (77%), Positives = 227/266 (85%)
Query: 1 MRVIVQQSEPSRTSDC-ND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ND KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEV 263
ADTPGFNQPSLLKVTK SLA FPE+
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEI 308
|
|
| UNIPROTKB|A8IGD6 CHLREDRAFT_49443 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 78/165 (47%), Positives = 108/165 (65%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V ++DWV RG + V RS+ + DP VANV+H LL+
Sbjct: 2 LLCSLRSLLRKLRQDVVVGDVVRVEAVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLV 61
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFC 142
F++D P E ++RFLV E+ G+ +L LNK +LV EVL RL WGYEP+
Sbjct: 62 FALDTPPFEEQQVSRFLVAYEAAGVSFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVL 118
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
S E+ G++ + RL D+ +V+ GPSG GKSSLIN LR H D
Sbjct: 119 SCETGEGVEQVAARLSDRVSVVAGPSGAGKSSLINLLRRGRHRPD 163
|
|
| UNIPROTKB|Q81WH7 rsgA "Putative ribosome biogenesis GTPase RsgA" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
|
| TIGR_CMR|BA_3999 BA_3999 "conserved hypothetical protein TIGR00157" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
Identities = 59/158 (37%), Positives = 90/158 (56%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PSEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
S+ + +D L L +V+ G SGVGKSS++N LR
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR 180
|
|
| UNIPROTKB|Q3AC25 rsgA "Putative ribosome biogenesis GTPase RsgA" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
|
| TIGR_CMR|CHY_1477 CHY_1477 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 20 TGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG + +C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD
Sbjct: 17 TGKAIYMCKARGKFKKDNIKILTGDRVIIRELV-PNSEGVIESLLPRKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTW 135
+LL+F+ P + R LV A + + + L NK +LV+ E + +K L
Sbjct: 76 QVLLVFAFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKILP-- 133
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + + G+D L L + +V+ GPSGVGKS+LIN L
Sbjct: 134 --KVVAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL 175
|
|
| UNIPROTKB|Q9X242 rsgA "Putative ribosome biogenesis GTPase RsgA" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 51/165 (30%), Positives = 93/165 (56%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 136 GYEPLF-CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
G P+ S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 183
|
|
| TIGR_CMR|VC_0340 VC_0340 "ribosome small subunit-dependent GTPase A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 57/167 (34%), Positives = 93/167 (55%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL 226
|
|
| UNIPROTKB|Q71YJ7 rsgA1 "Putative ribosome biogenesis GTPase RsgA 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 51/159 (32%), Positives = 77/159 (48%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPDK--EAIKDYISGKTAVIAGQSGVGKSTLLNSLNS 179
|
|
| UNIPROTKB|Q8EJ79 rsgA "Putative ribosome biogenesis GTPase RsgA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 56/170 (32%), Positives = 93/170 (54%)
Query: 27 VVRALLKKIKRRVLVGDKVVVG-SIDWVDRRGM---IENVFQRSTEILDPPV-------- 74
+VR +++ ++ GDKV+V +I+ G+ +E V R + + P +
Sbjct: 65 IVRCNIRRTITSLVTGDKVIVRLAIESQANSGIAGIVEAVHPRHSSLSRPDLYDGVKIIA 124
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+N+D +L++ S+ P + R+LV AE T IP + LNK++L+ E + L
Sbjct: 125 SNIDQILIVSSV-LPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEEALKR 183
Query: 135 W---GYEPLFCSVESKLG--LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ GY P++ V SKLG L+++ L+D+ +V G SGVGKSSL+NAL
Sbjct: 184 YQDIGY-PVY-KVSSKLGEGLETIKALLKDKVSVFAGQSGVGKSSLVNAL 231
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 276 | |||
| PRK12289 | 352 | PRK12289, PRK12289, GTPase RsgA; Reviewed | 2e-95 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 2e-68 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 8e-66 | |
| PRK00098 | 298 | PRK00098, PRK00098, GTPase RsgA; Reviewed | 6e-60 | |
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 5e-56 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 8e-51 | |
| PRK12288 | 347 | PRK12288, PRK12288, GTPase RsgA; Reviewed | 8e-36 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 2e-18 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 5e-13 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 2e-09 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 1e-07 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 4e-07 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 6e-07 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 4e-06 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 7e-06 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 7e-06 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 1e-05 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 3e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 8e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-04 | |
| cd01858 | 157 | cd01858, NGP_1, A novel nucleolar GTP-binding prot | 2e-04 | |
| PRK00300 | 205 | PRK00300, gmk, guanylate kinase; Provisional | 3e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-04 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-04 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 0.001 | |
| cd00071 | 137 | cd00071, GMPK, Guanosine monophosphate kinase (GMP | 0.001 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 0.002 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.002 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 0.002 | |
| PRK13796 | 365 | PRK13796, PRK13796, GTPase YqeH; Provisional | 0.002 | |
| COG0194 | 191 | COG0194, Gmk, Guanylate kinase [Nucleotide transpo | 0.003 | |
| TIGR03263 | 179 | TIGR03263, guanyl_kin, guanylate kinase | 0.003 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.004 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 0.004 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 0.004 |
| >gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 2e-95
Identities = 119/241 (49%), Positives = 156/241 (64%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
LLC R LKKI ++V+VGD+V+V DW +RG I V R TE+ PPVAN D +LL
Sbjct: 36 LLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILL 95
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +P L+P+ L+RFLV+AESTG+ + L LNK +LV W+ RL WGY+PLF
Sbjct: 96 VFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI 155
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SVE+ +GL++LL++LR++ TV+ GPSGVGKSSLIN L + +
Sbjct: 156 SVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRL-----------IPD--------- 195
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K GRG+HTTRHV L L GG LADTPGFNQP L + + LA FPE
Sbjct: 196 --VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPD-LDCSPRELAHYFPE 252
Query: 263 V 263
Sbjct: 253 A 253
|
Length = 352 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 2e-68
Identities = 77/189 (40%), Positives = 104/189 (55%), Gaps = 22/189 (11%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANVD +L++FS+ +P L R+LV AE++GI + LNK +LVD+E L
Sbjct: 1 ANVDQVLIVFSLKEPFFNLRLLDRYLVAAEASGIEPVIVLNKADLVDDEELEELLEIYEK 60
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY L S ++ GLD L + L+ +T+V+VG SGVGKS+L+NAL P
Sbjct: 61 LGYPVLAVSAKTGEGLDELRELLKGKTSVLVGQSGVGKSTLLNAL--LPE---------- 108
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
GE+S K GRG+HTT H L PL GGG + DTPGF + LL + +
Sbjct: 109 ----------LVLATGEISEKLGRGRHTTTHRELFPLPGGGLIIDTPGFRELGLLHIDPE 158
Query: 255 SLAQTFPEV 263
LA+ FPE
Sbjct: 159 ELAEYFPEF 167
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 8e-66
Identities = 88/242 (36%), Positives = 125/242 (51%), Gaps = 27/242 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
C R L+K + +VGD+VV + G+IE + R ++ PPVAN D ++
Sbjct: 29 VYRCRARGNLRKKDLKPVVGDRVVFEDENN---NGVIEKILPRKNVLIRPPVANNDQAII 85
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR--LHTWGYEPL 140
+ S+ P L R+LV AE+ GI + LNK++L+D+E + GY L
Sbjct: 86 VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F S ++ GL+ L + L + TV++G SGVGKS+LINAL
Sbjct: 146 FVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPE------------------ 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q+ GE+S K GRG+HTT HV L PL GGG++ DTPGF L + + L Q F
Sbjct: 188 ----LNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAF 243
Query: 261 PE 262
PE
Sbjct: 244 PE 245
|
Length = 301 |
| >gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 191 bits (489), Expect = 6e-60
Identities = 89/253 (35%), Positives = 122/253 (48%), Gaps = 36/253 (14%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----- 74
G C R +K VGD+V S + D G+I + +R ++ PP+
Sbjct: 19 DGQVYQCRARGKFRKKTNTPAVGDRVEF-SAENNDE-GVILEIHERKNLLVRPPIFKSKL 76
Query: 75 --ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
ANVD +L+F+ +P L RFLV AE+ GI + LNK++L+D+ L + L
Sbjct: 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD--LEEARELL 134
Query: 133 HTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ GY+ L S + GLD L L + TV+ G SGVGKS+L+NAL P
Sbjct: 135 ALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKSTLLNALA--PDL---- 188
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+ + GE+S GRGKHTT HV L L GGG L DTPGF+ L
Sbjct: 189 ----------------ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLH 232
Query: 250 KVTKQSLAQTFPE 262
+ + L FPE
Sbjct: 233 DLEAEELEHYFPE 245
|
Length = 298 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 5e-56
Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 26/225 (11%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
++VGD+VV + + +R E+ P VAN+D ++++ S P+L L R
Sbjct: 1 LVVGDRVVWE--PGNPVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR 58
Query: 99 FLVEAESTGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL 157
FLV AE+ I + LNK++L+D+E + GY+ L S +++ GL L++ L
Sbjct: 59 FLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEAL 118
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+++ +V G SGVGKSSLINAL S Q+V ++S+K G
Sbjct: 119 QNRISVFAGQSGVGKSSLINALDPSVK----------------------QQVNDISSKLG 156
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GKHTT HV L GG +ADTPGFN+ L + + L Q F E
Sbjct: 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVE 200
|
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 8e-51
Identities = 54/138 (39%), Positives = 70/138 (50%), Gaps = 22/138 (15%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
L GYE L S ++ G++ L L+ +T+V+ G SGVGKS+L+NAL
Sbjct: 1 LEELLEIYEAIGYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPE-- 58
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D R GE+S K GRG+HTT HV L PL GGG L DTPGF
Sbjct: 59 --------------------LDLRTGEISEKLGRGRHTTTHVELFPLPGGGLLIDTPGFR 98
Query: 245 QPSLLKVTKQSLAQTFPE 262
+ L + + LA+ FPE
Sbjct: 99 ELGLWHLDPEELAEYFPE 116
|
Length = 161 |
| >gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-36
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 40/250 (16%)
Query: 26 CVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDP-------PVA- 75
C +R ++ ++ GD+VV G G++E V R++ + P P+A
Sbjct: 64 CNIRRTIRS----LVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDGVKPIAA 119
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
N+D ++++ ++ P+L + R+LV E+ GI + LNK++L+D+E +N
Sbjct: 120 NIDQIVIVSAV-LPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY 178
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY L S + GL+ L L + ++ VG SGVGKSSLINAL P A
Sbjct: 179 RNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKSSLINALL--PEA------- 229
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ VG+VS SG G+HTT L GG L D+PG + L +
Sbjct: 230 -------------EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLE 276
Query: 253 KQSLAQTFPE 262
+ + Q F E
Sbjct: 277 PEQVTQGFVE 286
|
Length = 347 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 55/244 (22%)
Query: 42 GDKVVVGSIDWV--------------DRRGMIENVFQRST-------EILDPPVANVDHL 80
GD+ VG DWV RR ++F R +++ ANVD +
Sbjct: 66 GDRPAVG--DWVLLDNEKKARIVRLLPRR----SLFSRKAAGTRSEEQLI---AANVDTV 116
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++ S++ + R+L A +G + L K +L ++ + G L
Sbjct: 117 FIVCSLNHD-FNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVL 175
Query: 141 FCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S GLD L L +T ++G SGVGKS+L+NAL L
Sbjct: 176 AVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNAL-------------------L 216
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G E Q+ G V +G+HTT H L PL GG L DTPG + L + + +T
Sbjct: 217 GE---EVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLWD-AEDGVEET 272
Query: 260 FPEV 263
F ++
Sbjct: 273 FSDI 276
|
Length = 356 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-13
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 102 EAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG----LDSLLQRL 157
A G L + LNK +LV EVL WK + G ++ S +LG ++ +
Sbjct: 35 MALELGKKLIIVLNKADLVPREVLEKWKEVFESEGLPVVYVSARERLGTRILRRTIKELA 94
Query: 158 RDQTTVIVGPSG---VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
D VIVG G VGKSS+INAL+ AS + PI GS +
Sbjct: 95 IDGKPVIVGVVGYPKVGKSSIINALKGRHSASTS--------PIPGSPGY---------- 136
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPG 242
T+ + L+ + YL DTPG
Sbjct: 137 --------TKGIQLVRIDSKIYLIDTPG 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 40/154 (25%)
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGLDSLLQRLRD 159
V L + LNK +LV +EVL W + L +G + F S + G+ L +
Sbjct: 22 VLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTKTFFISATNGQGILKLKAEITK 81
Query: 160 QTTV----------IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
Q +VG VGKSS INAL +
Sbjct: 82 QKLKLKYKKGIRVGVVGLPNVGKSSFINALLN---------------------------- 113
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ K G TT+ + L YL DTPG
Sbjct: 114 -KFKLKVGSIPGTTKLQQDVKLDKEIYLYDTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 48/150 (32%)
Query: 112 LALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGL-----------DSLLQRLRD 159
L LNK +L +EV WK G +P+F S +S+ G + ++RL+
Sbjct: 66 LVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKK 125
Query: 160 -------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+VG VGKS+LIN L A
Sbjct: 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAK-------------------------T 160
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
S + G TT+ + + L G YL DTPG
Sbjct: 161 SNRPG----TTKGIQWIKLDDGIYLLDTPG 186
|
Length = 322 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 43/131 (32%), Positives = 50/131 (38%), Gaps = 41/131 (31%)
Query: 112 LALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171
L LNK +LV EE W G LF S L + T +VG VG
Sbjct: 47 LLLNKADLVTEEQRKAWARYFKKEGIVVLFFSA------------LNEATIGLVGYPNVG 94
Query: 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231
KSSLINAL +GSK +VS S GK T+H + L
Sbjct: 95 KSSLINAL-------------------VGSK--------KVSVSSTPGK--TKHFQTIFL 125
Query: 232 SGGGYLADTPG 242
G L D PG
Sbjct: 126 EPGITLCDCPG 136
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 6e-07
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 109 PLTLALNKVEL----VDEEVLNTW-KSRLHTWGYEP---LFCSVESKLGLDSLLQ---RL 157
P+ L NK++L V+ + W K R G +P + S + G+D LL +
Sbjct: 92 PVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151
Query: 158 RDQTTV-IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
R++ V +VG + VGKSSLIN +L ++ +V T S
Sbjct: 152 RNKKDVYVVGVTNVGKSSLINK-------------------LLK----QNNGDKDVITTS 188
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 189 -PFPGTTLDLIEIPLDDGHSLYDTPGI 214
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-06
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 46/146 (31%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ------------- 160
LNK +L D W + G LF + ++ G+ LL++ +
Sbjct: 53 LNKADLADPAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKENEKLKAKGLL 112
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
++VG VGKS+LIN LR A +VG K
Sbjct: 113 PRPLRAMVVGIPNVGKSTLINRLRGKKVA----------------------KVGN---KP 147
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPG 242
G TR + + L DTPG
Sbjct: 148 G----VTRGQQWIRIGPNIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 32/113 (28%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
+VG VGKS+LINAL +V VS G T
Sbjct: 3 ALVGRPNVGKSTLINALT-------------------------GAKVAIVSDYPG----T 33
Query: 223 TRHVSLLPLSGG--GYLADTPGFNQPSLLKVTKQSLAQTFPEV-CAVGLLYMI 272
TR L L G L DTPG + + + + + A +L ++
Sbjct: 34 TRDPILGVLGLGRQIILVDTPGLIEGASEGKGVEGFNRFLEAIREADLILLVV 86
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
VD G+ E E+ + D +LL+ + E A L GIP+ L
Sbjct: 52 VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIIL 111
Query: 113 ALNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRL 157
NK++L++E + G S ++ G+D L ++L
Sbjct: 112 VGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 36/136 (26%), Positives = 49/136 (36%), Gaps = 35/136 (25%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ-----------RL 157
P L LNK +L D EV W G + L + + G+ +L+ R
Sbjct: 53 PRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERR 112
Query: 158 RDQT-------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE--- 196
+ + +I+G VGKS+LIN L A + E
Sbjct: 113 KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLD 172
Query: 197 -P-ILGSKWFEDQRVG 210
P IL K EDQ VG
Sbjct: 173 TPGILWPK-LEDQEVG 187
|
Length = 287 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 31/148 (20%)
Query: 109 PLTLALNKVELV-----DEEVLNTWKSRLHTWGYEPL---FCSVESKLGLDSLLQRLRDQ 160
P+ L NK++L+ + K RL G + S + G++ L++ ++
Sbjct: 62 PVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGGLKIKDVILVSAKKGWGVEELIEEIKKL 121
Query: 161 TTV-----IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+VG + VGKS+LINAL + + S
Sbjct: 122 AKYRGDVYVVGATNVGKSTLINAL--LKSNGGKVQAQALVQRLTVSPIP----------- 168
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGF 243
TT + +PL G L DTPG
Sbjct: 169 -----GTTLGLIKIPLGEGKKLYDTPGI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 35/131 (26%)
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQT------------ 161
LNK +L D V W G + L + + G+ +++ +
Sbjct: 55 LNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGL 114
Query: 162 ------TVIVGPSGVGKSSLINALRSSPHASDAA-----------DVDNWFE----P-IL 199
+IVG VGKS+LIN L A + + E P IL
Sbjct: 115 LNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGIL 174
Query: 200 GSKWFEDQRVG 210
K FEDQ VG
Sbjct: 175 WPK-FEDQEVG 184
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 28/85 (32%), Positives = 29/85 (34%), Gaps = 33/85 (38%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
I G VGKSSL+NAL LG VG VS G T
Sbjct: 1 AIFGRPNVGKSSLLNAL-------------------LGQN------VGIVSPIPG----T 31
Query: 223 TRHVSL--LPLSGGG--YLADTPGF 243
TR L G L DTPG
Sbjct: 32 TRDPVRKEWELLPLGPVVLIDTPGL 56
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 110 LTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESKLGLDSLLQRLR---------D 159
L LNK +LV V W L F S+ + G +L+ LR
Sbjct: 42 LIFVLNKCDLVPTWVTKRWVKVLSKEYPTLAFHASITNPFGKGALINLLRQFAKLHSDKK 101
Query: 160 QTTV-IVGPSGVGKSSLINALRS 181
Q +V +G VGKSS+IN LRS
Sbjct: 102 QISVGFIGYPNVGKSSVINTLRS 124
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-04
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSG GKS+L+ AL
Sbjct: 9 VLSGPSGAGKSTLVKALLERDP 30
|
Length = 205 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
L+L +D L P L G P+ L LNK++LV +EE L +
Sbjct: 79 LVLLVVD-SDLTPVEEEAKLGLLRERGKPVLLVLNKIDLVPESEEEELLRERKLELLPDL 137
Query: 138 EPLFCSVESKLGLDSLLQRL 157
+ S G+D L +++
Sbjct: 138 PVIAVSALPGEGIDELRKKI 157
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
Q +VGPSG GK+SL+NAL
Sbjct: 377 QRIALVGPSGAGKTSLLNAL 396
|
Length = 588 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ +VGP+G GKS+L+ A+ +P G + + + ++ +
Sbjct: 24 AGEIVALVGPNGSGKSTLLRAIA------------GLLKPTSGEILIDGKDIAKLPLEEL 71
Query: 218 RGKHTTRHVSLLP-LSGG 234
R R + +P LSGG
Sbjct: 72 R-----RRIGYVPQLSGG 84
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 36/108 (33%)
Query: 110 LTLALNKVELVDEEVLNTW--------------------KSRLHTWGYEPLFCSVESK-- 147
L L LNK++LV +E + W K L + + S +
Sbjct: 33 LVLVLNKIDLVPKENVEKWLKYLRNEFPTVAFKASTQQQKKNLS-RKSKKVKASDDLLSS 91
Query: 148 ---LGLDSLLQRL----RDQ-----TTV-IVGPSGVGKSSLINALRSS 182
LG D+LL+ L R++ TV +VG VGKSS+IN+L+ S
Sbjct: 92 SACLGADALLKLLKNYARNKGIKTSITVGVVGYPNVGKSSVINSLKRS 139
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 163 VIVGPSGVGKSSLINALRSSPH 184
V+ GPSGVGKS+L+ L
Sbjct: 3 VLSGPSGVGKSTLLKRLLEEFD 24
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 29/101 (28%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH- 221
V+VG GVGKSSL+NAL VGEVS G +
Sbjct: 1 VVVGRGGVGKSSLLNALL-------------------------GGEVGEVSDVPGTTRDP 35
Query: 222 TTRHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLAQT 259
L L DTPG F ++ + L
Sbjct: 36 DVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGA 76
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 19/87 (21%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLDSLLQRL---------- 157
P+ L NK++ E+ + + ++ G+ EP+ S E G+ LL +
Sbjct: 109 PVILVANKIDGKKEDAV---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE 165
Query: 158 --RDQTTV---IVGPSGVGKSSLINAL 179
+ + I+G VGKS+L+NAL
Sbjct: 166 EEEEDGPIKIAIIGRPNVGKSTLVNAL 192
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 20/90 (22%)
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC-SVESKLGLDSLLQRLRDQTTV-- 163
P+ L +NK++ + E L ++ G+ S E G+ LL + +
Sbjct: 112 KKPVILVVNKIDNLKAEEL---AYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDE 168
Query: 164 --------------IVGPSGVGKSSLINAL 179
I+G VGKSSLINA+
Sbjct: 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAI 198
|
Length = 444 |
| >gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 40/148 (27%)
Query: 109 PLTLALNKVEL----VDEEVLNTW-KSRLHTWGYEPL---FCSVESKLGLDSLLQ---RL 157
P+ L NK +L V + + W + G P+ S + G+D LL+ +
Sbjct: 98 PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157
Query: 158 RDQTTV-IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--VST 214
R+ V +VG + VGKS+LIN + I + GE V T
Sbjct: 158 REGRDVYVVGVTNVGKSTLINRI------------------I-------KEITGEKDVIT 192
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPG 242
S R TT +PL G +L DTPG
Sbjct: 193 TS-RFPGTTLDKIEIPLDDGSFLYDTPG 219
|
Length = 365 |
| >gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V+ GPSGVGKS+L+ AL
Sbjct: 8 VLSGPSGVGKSTLVKALLED 27
|
Length = 191 |
| >gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 163 VIVGPSGVGKSSLINALRS 181
VI GPSG GKS+L+ AL
Sbjct: 4 VISGPSGAGKSTLVKALLE 22
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.004
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
+ IVGPSG GKS+L+ L
Sbjct: 29 EKVAIVGPSGSGKSTLLKLL 48
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 155 QRLRDQT-TVIVGPSGVGKSSLINAL 179
+ LR+ VI+G VGKSSL+NAL
Sbjct: 212 KILREGLKVVIIGRPNVGKSSLLNAL 237
|
Length = 454 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.004
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 155 QRLRDQ-TTVIVGPSGVGKSSLINAL 179
+ LR+ VI G VGKSSL+NAL
Sbjct: 210 EILREGLKVVIAGRPNVGKSSLLNAL 235
|
Length = 449 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 100.0 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 100.0 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 100.0 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 100.0 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 100.0 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 100.0 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.92 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.89 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.88 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.84 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.84 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.82 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.82 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.81 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.79 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.79 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.78 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.78 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.77 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.77 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.76 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.75 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.74 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.73 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.73 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.73 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.72 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.72 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.72 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.72 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 99.7 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.7 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.7 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.7 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.69 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.69 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.69 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.68 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.68 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.68 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.68 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.68 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.68 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.67 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.67 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.67 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.67 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.67 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.67 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.67 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.67 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.67 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.67 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.67 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.67 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.66 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.66 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.66 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.66 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.66 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.66 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.66 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.65 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.65 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.65 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.65 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 99.65 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.65 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.65 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.65 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.65 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.65 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.65 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.65 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.65 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.64 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.64 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.64 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.64 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.64 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.64 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.64 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.64 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.64 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.64 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.64 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.64 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.64 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.64 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.64 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.64 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.64 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.64 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.63 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.63 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.63 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.63 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.63 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.63 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.63 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.63 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.63 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.63 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.63 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.63 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.63 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.63 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.63 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.63 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.63 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.63 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.62 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.62 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.62 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.62 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.62 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.62 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.62 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.62 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.62 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.62 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.62 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.62 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.62 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.62 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.62 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.62 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.62 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.62 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.62 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.62 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.61 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.61 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.61 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.61 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.61 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.61 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.61 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.61 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.61 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.61 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.61 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.6 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.6 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.6 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.6 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.6 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.6 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.6 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.6 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.6 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.6 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.6 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.6 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.59 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.59 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.59 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.59 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.59 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.59 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.59 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.59 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.59 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.58 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.58 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.58 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.58 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.58 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.58 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.58 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.58 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.58 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.58 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.58 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.57 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.57 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.57 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.57 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.57 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.57 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.57 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.57 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.57 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.57 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.57 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.57 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.56 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.56 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.56 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.56 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.56 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.56 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.56 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.56 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.56 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.56 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.56 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.56 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.56 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.56 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.56 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.56 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.56 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.56 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.56 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.56 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.56 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.55 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.55 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.55 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.55 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.55 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.55 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.55 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.55 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.55 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.54 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.54 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.54 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.54 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.54 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.54 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.53 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.53 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.53 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.53 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.53 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.53 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.53 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.53 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.53 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.53 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.53 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.53 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.53 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.53 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.53 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.53 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.53 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.53 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.53 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.52 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.52 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.52 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.52 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.52 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.52 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.52 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.52 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.51 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.51 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.51 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.51 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 99.51 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.51 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.51 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.51 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.51 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.51 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.5 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.5 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.5 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.5 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.5 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.5 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.5 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.5 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.49 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.49 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.49 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.49 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.48 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.48 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.48 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.48 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.48 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.48 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.47 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.47 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.47 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.47 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.47 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.47 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.46 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.46 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.45 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.45 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.45 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.45 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.44 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.44 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.43 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.43 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.43 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.43 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.42 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.42 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.42 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.41 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.41 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.41 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.41 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.41 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.41 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.4 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.4 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.4 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.4 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.4 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.39 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.39 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.39 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.39 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.39 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.39 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.39 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.38 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.38 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.38 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.38 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.38 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.37 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.37 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.37 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.37 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.36 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.36 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.36 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.35 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.34 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.34 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.34 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.34 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.34 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.33 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.33 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.33 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.33 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.32 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.32 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.32 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.32 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.32 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.31 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.31 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.3 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.3 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.3 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.29 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.29 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.27 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.24 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.22 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.2 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.19 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.18 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.16 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.16 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.16 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.15 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.14 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.14 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.11 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.11 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.1 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.05 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.05 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.04 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.04 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.03 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.03 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 98.99 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 98.99 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 98.96 | |
| cd04466 | 68 | S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family ( | 98.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 98.94 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.92 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 98.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.91 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 98.91 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 98.9 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 98.83 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.81 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.79 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 98.78 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 98.77 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 98.75 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 98.73 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.73 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 98.72 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 98.72 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 98.7 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 98.68 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 98.67 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 98.66 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.65 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 98.63 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.63 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 98.61 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 98.59 | |
| cd04451 | 64 | S1_IF1 S1_IF1: Translation Initiation Factor IF1, | 98.57 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.56 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.56 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.53 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 98.52 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 98.51 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 98.5 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.5 | |
| PRK00276 | 72 | infA translation initiation factor IF-1; Validated | 98.5 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 98.49 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.48 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 98.48 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.46 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 98.45 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.45 | |
| CHL00010 | 78 | infA translation initiation factor 1 | 98.44 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.42 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.42 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 98.41 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.41 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.41 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.39 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.38 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.36 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 98.36 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 98.34 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 98.34 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.34 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 98.33 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.31 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 98.31 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 98.3 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 98.3 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.29 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.27 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.27 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 98.26 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.26 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.25 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 98.25 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 98.23 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.22 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 98.22 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.22 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.22 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 98.21 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 98.2 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 98.2 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.2 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.19 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.18 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.18 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 98.16 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 98.14 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 98.14 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 98.13 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 98.11 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.09 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 98.07 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 98.07 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.06 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.05 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 98.04 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 98.04 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 98.03 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 98.03 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.01 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 98.01 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 98.0 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 97.99 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 97.99 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.98 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 97.98 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.98 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 97.96 |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=374.39 Aligned_cols=241 Identities=38% Similarity=0.612 Sum_probs=222.1
Q ss_pred CeeEEEecCCCCcee--ccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhcccc
Q 023887 1 MRVIVQQSEPSRTSD--CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD 78 (276)
|.++|.++..|-|.+ .+..+++.+.|..||+|++....++|||||.++.... .|+|++++||+|.|.||.++|+|
T Consensus 5 ~~g~v~~~~~g~y~v~~~~~~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~~---~g~I~~i~~Rkn~L~Rp~v~n~d 81 (301)
T COG1162 5 KRGRVVKVDAGFYGVRLEEEVDGEVYRCRARGNLRKKDLKPVVGDRVVFEDENN---NGVIEKILPRKNVLIRPPVANND 81 (301)
T ss_pred cCcEEEEeeCCEEEEEEccccccceeeeeeecceeccCccccccCeEEEecCCC---cceEEEEecccCceeCCcccccc
Confidence 467888888999965 3334567899999999999889999999999987532 28999999999999999999999
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH--HHHHHhhhcCceeEEEecCCccchHHHHhh
Q 023887 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 79 ~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
++++|+++..|.+++++|+|||+.|++.|+.|+||+||+||++++... ++...|.++||.++.+|..+..+++.|...
T Consensus 82 ~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 82 QAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999877655 567788899999999999999999999999
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcE
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY 236 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ 236 (276)
++|++++|+|+||||||||+|+|.+.. .++++++|.+.++|||||++..+++++.+++
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~ 219 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGW 219 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCE
Confidence 999999999999999999999999976 4889999999999999999999999998999
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
|+|||||+++++++..++++.+.|+||.+.
T Consensus 220 iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~ 249 (301)
T COG1162 220 IIDTPGFRSLGLAHLEPEDLVQAFPEFAEL 249 (301)
T ss_pred EEeCCCCCccCcccCCHHHHHHHhHHHHHH
Confidence 999999999999999999999999999985
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=361.07 Aligned_cols=242 Identities=50% Similarity=0.839 Sum_probs=216.6
Q ss_pred CeeEEEecCCCCc-eeccCCC-----CcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchh
Q 023887 1 MRVIVQQSEPSRT-SDCNDKT-----GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~ 74 (276)
|.+.|... .+.| .|..+.+ +..+.|..||++++.+..|+|||||.++..++.+..++|++|+||+|.|.|+.+
T Consensus 9 ~~g~V~~~-~~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~ 87 (352)
T PRK12289 9 LLGTVVAV-QANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPV 87 (352)
T ss_pred ccEEEEEE-ECCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhh
Confidence 56888888 5555 7754321 357999999999977777999999999876665678999999999999999999
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (276)
+|+|++++|+++.+|.+++..++|||..++..++|+++|+||+||.+++..+.|...+..+||.++.+|+.++.+++.|.
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~ 167 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALL 167 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHh
Confidence 99999999999988988988999999999999999999999999998777778888888899999999999999999999
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
..+.+++++|+|+||||||||||.|.+.. ...+++++.+.++|||||++..++.++.+
T Consensus 168 ~~L~~ki~v~iG~SgVGKSSLIN~L~~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g 225 (352)
T PRK12289 168 EQLRNKITVVAGPSGVGKSSLINRLIPDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNG 225 (352)
T ss_pred hhhccceEEEEeCCCCCHHHHHHHHcCcc----------------------ccccccccCCCCCCCCcCceeEEEECCCC
Confidence 99999999999999999999999999976 36788999999999999999999999878
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
++|+||||++.+++ ..+.+++...|+++.+.
T Consensus 226 ~~liDTPG~~~~~l-~~~~~~l~~~F~e~~~~ 256 (352)
T PRK12289 226 GLLADTPGFNQPDL-DCSPRELAHYFPEARQR 256 (352)
T ss_pred cEEEeCCCcccccc-ccCHHHHHhhHHHHHHh
Confidence 89999999999999 57889999999999873
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=348.39 Aligned_cols=237 Identities=32% Similarity=0.471 Sum_probs=207.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccC--CeeEEeeecccccccccch----
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD--RRGMIENVFQRSTEILDPP---- 73 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~--~~~~i~~i~~R~~~~~r~~---- 73 (276)
|.+.|.+. .|.| .|.++ +|..+.|.+||+++ .|+|||||.++..+... ..|+|++|+||+|.|.||.
T Consensus 40 ~~g~Vi~~-~~~~~~v~~~-~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~ 113 (347)
T PRK12288 40 QEGIVISR-FGQHADVEAA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDG 113 (347)
T ss_pred cceEEEEE-ECCEEEEEeC-CCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCcccc
Confidence 45778887 5555 77664 78889999999885 39999999998542111 1389999999999999975
Q ss_pred ----hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH---HHHHHHHHhhhcCceeEEEecCC
Q 023887 74 ----VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 74 ----~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~---~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
|||+|++++|++.. |.+++.+++|||..++..++|+++|+||+||.+++ ....+...|.+++++++.+|+.+
T Consensus 114 ~q~iaANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 114 VKPIAANIDQIVIVSAVL-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred cceEEEEccEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 79999999999975 89999999999999999999999999999998754 23456667778899999999999
Q ss_pred ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
+.+++.|...+.+++++|+|+||||||||||+|+|.. ...+++++...++|||||+..
T Consensus 193 g~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~ 250 (347)
T PRK12288 193 GEGLEELEAALTGRISIFVGQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAA 250 (347)
T ss_pred CcCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeE
Confidence 9999999999999999999999999999999999976 367899999999999999999
Q ss_pred EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 227 ~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
.++.++.+++|+||||+++++++.++.+++...|+||.+.
T Consensus 251 ~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~ 290 (347)
T PRK12288 251 RLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDY 290 (347)
T ss_pred EEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHH
Confidence 9999988889999999999999988889999999999875
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=331.46 Aligned_cols=240 Identities=36% Similarity=0.554 Sum_probs=212.8
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchh-----
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----- 74 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~----- 74 (276)
|.+.|.+. +|.| .|.++ +|.++.|++||++++.+..|+|||||.++.. .++.|+|++++||+|.+.|+.+
T Consensus 1 ~~g~v~~~-~~~~~~v~~~-~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~ 76 (298)
T PRK00098 1 MEGLIIKA-LGGFYYVESE-DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKL 76 (298)
T ss_pred CeEEEEEE-ECCEEEEEEC-CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccc
Confidence 78899998 6666 77654 5789999999999876778999999999863 3467899999999999999886
Q ss_pred --ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHhhhcCceeEEEecCCccchH
Q 023887 75 --ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (276)
Q Consensus 75 --anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 151 (276)
+|+|++++|+++..|.++...++|++..++..++|+++|+||+||. +.+....|...+.+++++++.+|+.++.+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 9999999999998898888899999999999999999999999997 4444456667777889999999999999999
Q ss_pred HHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec
Q 023887 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (276)
Q Consensus 152 ~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~ 231 (276)
.|...++|++++|+|+||||||||+|+|+|... ..+++++...++|+|||+...++.+
T Consensus 157 ~L~~~l~gk~~~~~G~sgvGKStlin~l~~~~~----------------------~~~g~v~~~~~~G~htT~~~~~~~~ 214 (298)
T PRK00098 157 ELKPLLAGKVTVLAGQSGVGKSTLLNALAPDLE----------------------LKTGEISEALGRGKHTTTHVELYDL 214 (298)
T ss_pred HHHhhccCceEEEECCCCCCHHHHHHHHhCCcC----------------------CCCcceeccCCCCCcccccEEEEEc
Confidence 999999999999999999999999999999762 4567787788999999999999999
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+.+++++||||++.++++..+.+++.+.|+++.+.
T Consensus 215 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~ 249 (298)
T PRK00098 215 PGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPL 249 (298)
T ss_pred CCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHH
Confidence 88899999999999999988899999999999874
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=327.79 Aligned_cols=236 Identities=40% Similarity=0.594 Sum_probs=205.8
Q ss_pred EEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccch--------h
Q 023887 4 IVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------V 74 (276)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~--------~ 74 (276)
.|.+. .|.| .+.++ +..+.|++||++++.+..|+|||||.++..+ ++.++|++++||+|.|.||. +
T Consensus 2 ~v~~~-~~~~~~v~~~--~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~ 76 (287)
T cd01854 2 RVIAV-HGGFYDVETE--GGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIA 76 (287)
T ss_pred EEEEE-ECCEEEEEEC--CeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEE
Confidence 45556 5566 66654 6789999999998766789999999998643 45799999999999999998 9
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (276)
+|+|++++|+++..|.+++..++|+|..++..++|+++|+||+||.++.....+...+.+++++++.+|+.++.+++.|.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 99999999999998887888999999999999999999999999987654445556666789999999999999999999
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
..+++++++|+|+||||||||||+|.|... ..+++++...++|+|||+...++.+..+
T Consensus 157 ~~L~~k~~~~~G~sg~GKSTlin~l~~~~~----------------------~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 157 EYLKGKTSVLVGQSGVGKSTLINALLPDLD----------------------LATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred hhhccceEEEECCCCCCHHHHHHHHhchhh----------------------ccccceeccCCCCCcccceEEEEEcCCC
Confidence 999999999999999999999999999762 3455566667899999999999999878
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
++++||||++.+++...+.+++...|+++.+.
T Consensus 215 ~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~ 246 (287)
T cd01854 215 GLLIDTPGFREFGLLHIDPEELAHYFPEFREL 246 (287)
T ss_pred CEEEECCCCCccCCccCCHHHHHHHhHHHHHH
Confidence 89999999999998778899999999999874
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=308.07 Aligned_cols=203 Identities=39% Similarity=0.565 Sum_probs=184.3
Q ss_pred ceeCcEEEEeeecccCCeeEEeeecccccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 023887 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (276)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~D 118 (276)
|+|||||.++..+ ++.++|+++++|.+.+.|+.++|+|++++|+++..|.++...+++++..++..++|+++|+||+|
T Consensus 1 ~~vGD~V~~~~~~--~~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGN--VVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecC--CCceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 5899999998653 35689999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCHHH-HHHHHHHhhhcCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc
Q 023887 119 LVDEEV-LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (276)
Q Consensus 119 l~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p 197 (276)
|.++.. ..++...+.+.+++++.+|+.++.+++.+...+.+++++|+|+||||||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 976443 33566777788999999999999999999999999999999999999999999999976
Q ss_pred cccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 198 ~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
..++++++.+.++|||||++..++++ .+++|+||||++.++++..+.+++...|+||.+.
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~ 204 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDY 204 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHH
Confidence 36788999999999999999999999 5789999999999999999999999999999874
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=300.87 Aligned_cols=234 Identities=27% Similarity=0.387 Sum_probs=193.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccc----cCCCceeCcEEEEeeecccCCeeEEeeecccccccccch--
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP-- 73 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~-- 73 (276)
|.+.|.+. .|.| .|.++ +| ++.|.++|++++ .+..|+|||||.++. ++.|+|++++||+|.+.||.
T Consensus 29 ~~g~v~~~-~~~~~~v~~~-~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~ 101 (356)
T PRK01889 29 EPGRVVEE-HRSGYVVATE-EG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAG 101 (356)
T ss_pred ccEEEEEE-ECCEEEEEEC-Cc-EEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCC
Confidence 45778888 5555 77664 44 678999999975 345699999999974 35689999999999999986
Q ss_pred --------hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEec
Q 023887 74 --------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 74 --------~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~ 144 (276)
|||+|++++|++++ |.+++.+++|||+.|+..+++++||+||+||+++.. ...+...+ ..+|+++.+|+
T Consensus 102 ~~~~~q~iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa 179 (356)
T PRK01889 102 TRSEEQLIAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSA 179 (356)
T ss_pred CCccceeEEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEEC
Confidence 69999999999996 889999999999999999999999999999987532 22223333 56899999999
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt 223 (276)
.++.+++.|...+ +|++++|+|+||+|||||+|+|+|.. .|..|+|.+++ ++++|+|
T Consensus 180 ~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~------------~~~~G~i~~~~----------~~g~~tt 237 (356)
T PRK01889 180 LDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEE------------VQKTGAVREDD----------SKGRHTT 237 (356)
T ss_pred CCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhc------------ccceeeEEECC----------CCCcchh
Confidence 9999999999998 68999999999999999999999966 56666666543 4567888
Q ss_pred eeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 224 ~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+...+..+..+.+++||||++.+.+.... ..+...|+++.+.
T Consensus 238 ~~~~l~~l~~~~~l~DtpG~~~~~l~~~~-~~l~~~f~~~~~~ 279 (356)
T PRK01889 238 THRELHPLPSGGLLIDTPGMRELQLWDAE-DGVEETFSDIEEL 279 (356)
T ss_pred hhccEEEecCCCeecCCCchhhhcccCch-hhHHHhHHHHHHH
Confidence 88888888778899999999999987643 6688999998874
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-26 Score=191.81 Aligned_cols=119 Identities=45% Similarity=0.747 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 126 ~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
++|.+.|+++||+++.+|..++.+++.|...+++++++|+|+||||||||+|.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 4677889999999999999999999999999999999999999999999999999976
Q ss_pred cccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 206 g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
.++++++|.+.++|+|||++..+++++.+++|+|||||+.+++...+.++|...|+||.+.
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~ 120 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPL 120 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHH
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccc
Confidence 3788999999999999999999999988999999999999999989999999999999974
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=168.57 Aligned_cols=142 Identities=27% Similarity=0.364 Sum_probs=108.6
Q ss_pred chhccccEEEEEEEcCCCCC-CHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~-~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (276)
..+.++|++++|+|++.|.. ....+++++.. ...++|+++|+||+|+.+++....|...+.+. .+.++..|+.++.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 46789999999999988743 35678888864 24569999999999999887777777777653 23456778887777
Q ss_pred hHHHHhhc----------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 150 LDSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 150 l~~l~~~l----------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
++.|...+ ++..++++|+||||||||+|+|.+... ..+++.+|
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~-------------------------~~~~~~~g-- 135 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV-------------------------CKVAPIPG-- 135 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc-------------------------eeeCCCCC--
Confidence 77666554 244678999999999999999998541 12233344
Q ss_pred CceeeeEEEEecCCCcEEEecCCC
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
+|+...++.++.+.+++||||+
T Consensus 136 --~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 --ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred --eeEeEEEEEcCCCEEEEECcCC
Confidence 8888999998878999999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=162.59 Aligned_cols=134 Identities=31% Similarity=0.348 Sum_probs=105.5
Q ss_pred cchhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
+..++++|.+++|+|++.|..+. ..+++++.... .++|+++|+||+|+.+++....|.+.+++.+++++++|+.++..
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 34689999999999998885443 47788875432 48999999999999887777778788888888889988876543
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEE
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~ 229 (276)
+++++|+||+|||||+|.|.+.. ...++..+| +|++...+
T Consensus 85 -----------~~~~~G~~~vGKstlin~l~~~~-------------------------~~~~~~~~~----~~~~~~~~ 124 (141)
T cd01857 85 -----------TIGLVGYPNVGKSSLINALVGKK-------------------------KVSVSATPG----KTKHFQTI 124 (141)
T ss_pred -----------EEEEECCCCCCHHHHHHHHhCCC-------------------------ceeeCCCCC----cccceEEE
Confidence 79999999999999999999854 123444556 45556677
Q ss_pred ecCCCcEEEecCCCCC
Q 023887 230 PLSGGGYLADTPGFNQ 245 (276)
Q Consensus 230 ~~~~~~~iiDtPg~~~ 245 (276)
.++.+.+++||||+..
T Consensus 125 ~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 125 FLTPTITLCDCPGLVF 140 (141)
T ss_pred EeCCCEEEEECCCcCC
Confidence 7777889999999943
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=153.81 Aligned_cols=135 Identities=30% Similarity=0.367 Sum_probs=104.2
Q ss_pred cEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccchHHHHh
Q 023887 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 78 D~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l~~l~~ 155 (276)
|++++|+|++.|..+ ...+++ ..+...++|+++|+||+|+.+++....|...+... ++.++.+|+.++.+++.|..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999887543 234443 23456789999999999998877666776555543 55789999999888887766
Q ss_pred hc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 156 RL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 156 ~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+ .+.+++++|.||+|||||+|+|.+... . . .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~----------------------~---~----~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK----------------------L---K----VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc----------------------c---c----cc
Confidence 32 457899999999999999999998541 1 1 23
Q ss_pred CCCceeeeEEEEecCCCcEEEecCCC
Q 023887 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
.++|+|+....+....+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 44669999999988888899999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=167.44 Aligned_cols=148 Identities=26% Similarity=0.381 Sum_probs=115.0
Q ss_pred cccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (276)
.++..++++|++++|+|++.|..+ ...+++++ .++|+++|+||+||.+++....|.+.+.+.+++++.+|+.++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345678999999999999888543 33566665 378999999999998877667787777666778899999988
Q ss_pred cchHHHHhhc----c--------------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l----~--------------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+++.|...+ + ...++++|.||||||||||.|.+.. .
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~-------------------------~ 143 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKK-------------------------V 143 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------------------c
Confidence 8887775543 1 2369999999999999999999844 1
Q ss_pred cccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
..++..+| +|+..+++....+..++||||+..+.+..
T Consensus 144 ~~~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 144 AKVGNRPG----VTKGQQWIKLSDGLELLDTPGILWPKFED 180 (276)
T ss_pred cccCCCCC----eecceEEEEeCCCEEEEECCCcccCCCCc
Confidence 22333445 78888899887788999999998777644
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=162.96 Aligned_cols=147 Identities=27% Similarity=0.414 Sum_probs=114.3
Q ss_pred ccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCcc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (276)
++..++++|.+++|+|++.|..+ ...+++++ .++|.++|+||+||.+++..+.|...+.+.+++++.+|+.++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 34578999999999999888443 33455554 3799999999999988766677877776667788999998888
Q ss_pred chHHHHhhc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 149 ~l~~l~~~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+++.|...+ ++.+++++|.||||||||+|+|.+.. ..
T Consensus 93 gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~ 147 (287)
T PRK09563 93 GVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IA 147 (287)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------cc
Confidence 877765542 12379999999999999999999854 22
Q ss_pred ccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
.++..+| +|+..+.+..+.+.+++||||+..+.+..
T Consensus 148 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 148 KTGNRPG----VTKAQQWIKLGKGLELLDTPGILWPKLED 183 (287)
T ss_pred ccCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCCCCc
Confidence 3344445 88889999988889999999998777543
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=153.25 Aligned_cols=142 Identities=30% Similarity=0.457 Sum_probs=106.9
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
...+..++++|++++|+|+..|..+.. .+..+ ..++|+++|+||+|+.+++....|.+.+...++.++.+|+.+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 334668999999999999987754322 22222 247899999999999877655566666666667889999999
Q ss_pred ccchHHHHhhccC-----------------CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 147 KLGLDSLLQRLRD-----------------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l~g-----------------~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+.+++.|...+.+ .+++++|.+|+|||||+|.|.+.. .
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~-------------------------~ 140 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK-------------------------V 140 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------------------c
Confidence 8888887765422 379999999999999999999844 1
Q ss_pred cccccccCCCCceeeeEEEEecCCCcEEEecCCC
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
...+..++ +|+..+++....+..++||||+
T Consensus 141 ~~~~~~~~----~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 141 AKVGNKPG----VTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred eeecCCCC----EEeeeEEEEecCCEEEEECCCC
Confidence 12222333 7888888887778899999997
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=147.22 Aligned_cols=143 Identities=31% Similarity=0.502 Sum_probs=105.8
Q ss_pred cccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (276)
+.|.+.+++|.+++|+|+..|... ...+.+++ ...++|+++|+||+|+.+++....|.......+++++.+|+.++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 456678899999999999876432 22344443 44689999999999998765555554333445678899999999
Q ss_pred cchHHHHhhc--------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 148 LGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 148 ~~l~~l~~~l--------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
.+++.|...+ ....++++|.||+|||||+|.|.+.. ....++..|
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~-------------------------~~~~~~~~~-- 134 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH-------------------------SASTSPSPG-- 134 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC-------------------------ccccCCCCC--
Confidence 9988877765 24688999999999999999999743 122222334
Q ss_pred CceeeeEEEEecCCCcEEEecCCC
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
+|+..+++..+.+..++||||+
T Consensus 135 --~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 --YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred --eeeeeEEEEcCCCEEEEECcCC
Confidence 6677778777778899999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-19 Score=163.31 Aligned_cols=145 Identities=32% Similarity=0.493 Sum_probs=116.5
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (276)
..+..+|.++.|+|++.|..+ ...+++++ .+++.++|+||+||++....++|...+.+- +...++.+.....+
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~ 104 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQG 104 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccC
Confidence 468899999999999999654 34788887 467779999999999999999999998776 56677777665554
Q ss_pred hHHHH--------hh---c--cC-----CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 150 LDSLL--------QR---L--RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 150 l~~l~--------~~---l--~g-----~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
...+. .. + .| ..++++|.||||||||||+|+|.. ...
T Consensus 105 ~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~ 159 (322)
T COG1161 105 GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAK 159 (322)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------cee
Confidence 44443 21 1 22 689999999999999999999954 345
Q ss_pred cccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
++..+| +|+..+.+..+.+.+|+||||+..+..+.
T Consensus 160 ~s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 160 TSNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred eCCCCc----eecceEEEEcCCCeEEecCCCcCCCCccc
Confidence 556666 99999999999999999999998777544
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=154.50 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=107.5
Q ss_pred ceeEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
|+.+...|..+. .++++++.+ +|+.+.++|+||+||||||++|.+.. .|+.|+|+++|.+++.+..
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e------------~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE------------RPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh------------cCCCceEEECCeecccccc
Confidence 445566676555 899999998 89999999999999999999999977 8999999999999998864
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
+. -+..++++++++|++++
T Consensus 72 ~~--iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 72 RE--IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred cc--cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 32 35688999999998765
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|.|||+- ++|+....++.++|.+|...| ++++|||.
T Consensus 150 RAiV~~P~vLlADEPTG---NLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 150 RAIVNQPAVLLADEPTG---NLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHccCCCeEeecCCCC---CCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 69999999 999999999999999999999 99999986
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=145.18 Aligned_cols=136 Identities=29% Similarity=0.367 Sum_probs=95.2
Q ss_pred cEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc---------
Q 023887 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK--------- 147 (276)
Q Consensus 78 D~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------- 147 (276)
|.+++|+|++.|..+ ...+.+++. ....++|.++|+||+||++++....|.+.+.+....+.+.+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 789999999987433 335555532 234579999999999999999888999888765433333332211
Q ss_pred ----------------cchHHHHhhc-----c-----CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc
Q 023887 148 ----------------LGLDSLLQRL-----R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (276)
Q Consensus 148 ----------------~~l~~l~~~l-----~-----g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~ 201 (276)
.+.+.+...+ + ...++++|.||+|||||||+|.|..
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~------------------ 141 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR------------------ 141 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc------------------
Confidence 0112221111 1 2489999999999999999999854
Q ss_pred eeeccccccccccccCCCCceeeeEEEEecCCCcEEEecCCC
Q 023887 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 202 i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
...++..+| +|+..+.+..+.+..++||||+
T Consensus 142 -------~~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 142 -------ACNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred -------cceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 223344455 8888888888778899999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-18 Score=147.17 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=100.4
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH----HHHHH--HHhhhcCc---eeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~--~~~~~~~~---~~~~~s 143 (276)
...++|.+++|+|+..|..+.. +.+ .....++|+++|+||+|+.+++. .+.|. ..+...++ .++.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 5689999999999976643321 121 12335789999999999975432 22232 11123333 578899
Q ss_pred cCCccchHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++.+++.|...+ .+..++|+|.||||||||||+|.+.... ... .......+..+|
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~----------~~~-------~~~~~~~~~~~g- 168 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNG----------KKK-------LKDLLTTSPIPG- 168 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhccc----------ccc-------cccccccCCCCC-
Confidence 99999998887776 3578999999999999999999985410 000 001112333333
Q ss_pred CCceeeeEEEEecCCCcEEEecCCC
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
||+....+.+..+.+++||||+
T Consensus 169 ---tT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 169 ---TTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred ---eeeeeEEEecCCCCEEEeCcCC
Confidence 9999999998778999999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-19 Score=157.27 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++++||||+|||||+++|+|.. +|.+|+|.++|+++....
T Consensus 6 ~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll------------~p~~G~i~~~g~~~~~~~- 72 (254)
T COG1121 6 EVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL------------KPSSGEIKIFGKPVRKRR- 72 (254)
T ss_pred EEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCcceEEEccccccccc-
Confidence 4567888998657999999988 89999999999999999999999976 999999999988654432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
....++|+||....
T Consensus 73 -------~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~ 145 (254)
T COG1121 73 -------KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQK 145 (254)
T ss_pred -------cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHH
Confidence 22356666663211
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|.....++.+++.+++++| |+++|||++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~---gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFT---GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 79999999 999999999999999999988 999999985
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-19 Score=158.16 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=105.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|++...++++++.+ +|++++|+||||||||||+++|+|.. +|.+|+|+++|+++...+.+
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l------------~p~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL------------KPKSGEVLLDGKDIASLSPK 72 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCCchhhcCHH
Confidence 467889999999999999998 89999999999999999999999976 99999999999999887754
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
. ..+.+++++|....
T Consensus 73 e-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 73 E-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred H-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 4 55677777776311
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. .||...+-++.+++.++.++ | ++++.||+|
T Consensus 148 ~iArALaQ~~~iLLLDEPTs---~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 148 LIARALAQETPILLLDEPTS---HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHHHhcCCCEEEeCCCcc---ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 69999999 99998999999999999954 5 899999985
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=152.13 Aligned_cols=120 Identities=24% Similarity=0.308 Sum_probs=103.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+..+|++...+++++..+ +|++++++||||+||||||++|.++. +|++|+|+++|..+..-...
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE------------~~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE------------EPDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc------------CCCCceEEECCEeccchhhH
Confidence 467889999999999999998 89999999999999999999999977 99999999999765432111
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++.+++++|.+++
T Consensus 73 ----~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 73 ----LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred ----HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence 1256778888887655
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. .||+.-..++.+.+.++++.| ++++||+|
T Consensus 149 RALaM~P~vmLFDEPTS---ALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 149 RALAMDPKVMLFDEPTS---ALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred HHHcCCCCEEeecCCcc---cCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 69999999 999999999999999999999 89999987
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=161.32 Aligned_cols=166 Identities=26% Similarity=0.332 Sum_probs=129.2
Q ss_pred CeeEEeeecccccccccc---hhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Q 023887 55 RRGMIENVFQRSTEILDP---PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130 (276)
Q Consensus 55 ~~~~i~~i~~R~~~~~r~---~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~ 130 (276)
++..+.+.++|.-.++|. .+.-+|+|+.++|+++|. |.+..|++|..... ..+..+|++||+||.+++....|.+
T Consensus 150 ~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~ 228 (562)
T KOG1424|consen 150 NEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAE 228 (562)
T ss_pred cCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-cccceEEEEehhhcCCHHHHHHHHH
Confidence 345777888888888885 799999999999999995 55678999986533 3467799999999999999999999
Q ss_pred HhhhcCceeEEEecCC------c----------cchHH--------------------------HHhh-----c------
Q 023887 131 RLHTWGYEPLFCSVES------K----------LGLDS--------------------------LLQR-----L------ 157 (276)
Q Consensus 131 ~~~~~~~~~~~~s~~~------~----------~~l~~--------------------------l~~~-----l------ 157 (276)
+|.+-++.++++|+.. . .+... +... +
T Consensus 229 YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~ 308 (562)
T KOG1424|consen 229 YFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTG 308 (562)
T ss_pred HHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCC
Confidence 9988778888888643 0 00000 0000 0
Q ss_pred ----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC
Q 023887 158 ----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (276)
Q Consensus 158 ----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~ 233 (276)
.-.++++||.|||||||+||+|.|.. .-.+|.-+| -|++++-+.+.+
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~K-------------------------kVsVS~TPG----kTKHFQTi~ls~ 359 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGRK-------------------------KVSVSSTPG----KTKHFQTIFLSP 359 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcCc-------------------------eeeeecCCC----CcceeEEEEcCC
Confidence 01589999999999999999999943 345666777 677888899999
Q ss_pred CcEEEecCCCCCCCCCh
Q 023887 234 GGYLADTPGFNQPSLLK 250 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~ 250 (276)
+..|+|+||.--|++..
T Consensus 360 ~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 360 SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred CceecCCCCccccCCCc
Confidence 99999999998888765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=151.20 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=96.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+..+|.....++++++.+ +|+.++|+||||||||||+|+++|.. +|++|+|.++|+++....
T Consensus 6 i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~------------~p~~G~V~~~g~~v~~p~-- 71 (248)
T COG1116 6 IEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE------------KPTSGEVLLDGRPVTGPG-- 71 (248)
T ss_pred EEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCcccCCCC--
Confidence 456777888888999999998 89999999999999999999999976 999999999999873321
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+++++|...+
T Consensus 72 --------~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 --------PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred --------CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHH
Confidence 234555554322
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.- .||..++..+.+.+.++.+. + ++++|||++
T Consensus 144 AL~~~P~lLLlDEPFg---ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 144 ALATRPKLLLLDEPFG---ALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHhcCCCEEEEcCCcc---hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 79999999 99999999999999999986 3 999999963
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-18 Score=150.68 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=106.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++-+++++++...++++++.+ +|++.+|+|+||+||||||+++.|.. +|++|+|+++|.++..+|+.
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCHH
Confidence 456788899999999999998 89999999999999999999999977 99999999999999988853
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.- ...++.+++++|.+.+
T Consensus 79 ~~--~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 EL--YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HH--HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 21 1245678888886533
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. ++|++....+.+++.++.+. + ++++|||++
T Consensus 157 ARAialdPell~~DEPts---GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 157 ARAIALDPELLFLDEPTS---GLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHhcCCCEEEecCCCC---CCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 69999999 99999999999999999985 5 899999974
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-18 Score=142.46 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=96.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY------------KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCcCCHH
Confidence 456677787667888888887 89999999999999999999999965 89999999999877654321
Q ss_pred cCCCCceeeeEEEEecCC-----------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 216 SGRGKHTTRHVSLLPLSG-----------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-----------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+.++++++-. ..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 71 ~----~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 71 D----ARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTA---ALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred H----HHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 1 1234566655322 3389999999 999999999999999997655 89999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-17 Score=152.52 Aligned_cols=159 Identities=26% Similarity=0.395 Sum_probs=111.1
Q ss_pred cccc-EEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCH----HHHHHHHHH-hhhcCc---eeEEEec
Q 023887 75 ANVD-HLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSR-LHTWGY---EPLFCSV 144 (276)
Q Consensus 75 anvD-~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~----~~~~~~~~~-~~~~~~---~~~~~s~ 144 (276)
...| +++.|+|+.++..+ ...+.++. .++|+++|+||+||.+. +....|... ++..|+ .++.+|+
T Consensus 67 ~~~~~lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred cccCcEEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 4445 88999998654333 22455543 37899999999999863 234455443 344565 5788999
Q ss_pred CCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCC
Q 023887 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (276)
Q Consensus 145 ~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk 220 (276)
.++.++++|...+ ++..++++|.||||||||||+|.+... | ..+....| ..+
T Consensus 142 k~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~-----~~~~~~~s----~~p 197 (365)
T PRK13796 142 QKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------G-----EKDVITTS----RFP 197 (365)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------C-----ccceEEec----CCC
Confidence 9988888887765 678999999999999999999997431 0 01112233 334
Q ss_pred ceeeeEEEEecCCCcEEEecCCCCCCC-C-ChhhHHHHHHHHHH
Q 023887 221 HTTRHVSLLPLSGGGYLADTPGFNQPS-L-LKVTKQSLAQTFPE 262 (276)
Q Consensus 221 ~tt~~~~~~~~~~~~~iiDtPg~~~~~-l-~~~~~~~l~~~f~e 262 (276)
+||+....++++.+.+++||||+.... + +.++.+++...++.
T Consensus 198 GTT~~~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~ 241 (365)
T PRK13796 198 GTTLDKIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPK 241 (365)
T ss_pred CccceeEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCC
Confidence 599999999998888999999995332 3 33456667666654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-18 Score=152.59 Aligned_cols=121 Identities=20% Similarity=0.349 Sum_probs=101.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.|+.+++.|.+...++++++.+ +|+.++|+|+|||||||+|+++.+.. +|++|+|.++|+++.+...
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi------------ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI------------EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc------------CCCCceEEECCeecccCCH
Confidence 3567888888888999999998 89999999999999999999999965 9999999999999887543
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
.. .++.++|+-|..++
T Consensus 71 ~~-----LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 71 VE-----LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred HH-----HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 22 44455554443222
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.- .+|+++...+.+.|.++.+. + ++++|||++
T Consensus 146 v~RALAadP~ilLMDEPFg---ALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 146 VARALAADPPILLMDEPFG---ALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred HHHHHhcCCCeEeecCCcc---ccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 79999999 99999999999999999975 5 999999974
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-17 Score=152.21 Aligned_cols=159 Identities=28% Similarity=0.394 Sum_probs=111.6
Q ss_pred hhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH----HHHHHHH-HhhhcCc---eeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (276)
.....|.+++|+|+.++..+ ...+.+++ .++|+++|+||+||.+.+ ....|.. .+++.++ .++.+|
T Consensus 60 ~~~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS 134 (360)
T TIGR03597 60 LGDSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVS 134 (360)
T ss_pred cccCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEec
Confidence 34577999999998654333 22455443 378999999999998643 3344543 3555666 478899
Q ss_pred cCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
+.++.+++++...+ +|..++|+|.+|||||||+|+|.+.... ......+|..+|
T Consensus 135 Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~--------------------~~~~~~~s~~pg-- 192 (360)
T TIGR03597 135 AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNG--------------------DKDVITTSPFPG-- 192 (360)
T ss_pred CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccC--------------------CcceeeecCCCC--
Confidence 99999998887766 4779999999999999999999985410 011234454444
Q ss_pred CceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
||+....++.+.+.+++||||+.... .+.++.+++..++
T Consensus 193 --tT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 193 --TTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred --eEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 99999999987788999999996543 2333444444433
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=155.95 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=102.9
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+..+|++...++++++.+ +|+.++|+||||||||||||+|+|.. +|++|+|.++|.++..+++
T Consensus 5 ~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe------------~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 5 ELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE------------EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCh
Confidence 3467788887755788999888 89999999999999999999999976 9999999999999999876
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..++++|++|++.+
T Consensus 73 -------~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 73 -------EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred -------hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence 34789999987533
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. +||.....+++..+.+++++ + +|++|||.
T Consensus 146 RAlVr~P~v~L~DEPlS---nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 146 RALVRKPKVFLLDEPLS---NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHhcCCCEEEecCchh---HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 69999999 89988889999999999875 5 89999984
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=147.79 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=99.9
Q ss_pred eEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 139 PLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 139 ~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.+...|..+ ..++++++.+ +|+.++|+||||||||||||+|.|.. .|++|.++++|.++...+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld------------~pt~G~v~i~g~d~~~l~ 73 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD------------KPTSGEVLINGKDLTKLS 73 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEcCcCC
Confidence 444555433 4688888888 89999999999999999999999977 899999999998888776
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.. .+......++++++|.+++
T Consensus 74 ~~-~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 74 EK-ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HH-HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 43 2334456778888887654
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++.|||+- +||..+.+++.++|.++.+. | ++++|||.
T Consensus 153 IARAL~~~P~iilADEPTg---nLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 153 IARALINNPKIILADEPTG---NLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHhcCCCeEEeeCccc---cCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 69999999 99999999999999999865 5 99999985
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=152.22 Aligned_cols=152 Identities=28% Similarity=0.362 Sum_probs=119.8
Q ss_pred cchhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
|..+..+|+|+.|.|+++|. ..+..+|+.+..+. .+++.++||||+||+|.+..++|..++++.+..+.+.+..+...
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~-gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH-GNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc-CCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 45799999999999999995 55678999886543 35999999999999999999999999999888777776544332
Q ss_pred -------------hHHHHhhc----c------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 150 -------------LDSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 150 -------------l~~l~~~l----~------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
.+.+...+ . --+++++|-|+|||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 22222222 1 1479999999999999999999743
Q ss_pred ccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhh
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~ 252 (276)
.+.+...+| .|+..+.+.++.+.-|+|.||+--+..+..+
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~~~~~ 316 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD 316 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCCCccc
Confidence 455544556 8999999999999999999999766665544
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-17 Score=144.38 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=102.4
Q ss_pred ceeEEEecCCcc----chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~~----~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.+.+.+.|..+. .++++++.+ +|++++++|+||+|||||.++|+|.. +|++|+|.++|.+...
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~------------~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE------------KPSSGSILLDGKPLAP 73 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc------------CCCCceEEECCcccCc
Confidence 356677777777 889999887 99999999999999999999999977 9999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
- ++.+...+.+++++|++..
T Consensus 74 ~----~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 74 K----KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred c----ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 3 2223467899999998643
Q ss_pred -------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. .||...+.++.++|.++++. + +|++|||+
T Consensus 150 iaIARAL~~~PklLIlDEptS---aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTS---ALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHhccCCCEEEecCchh---hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 69999999 99998999999999999985 4 99999996
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-17 Score=151.26 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=99.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 9 ~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~------------~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 9 DFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT------------HPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred EEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEecccchH
Confidence 3567788888778899999998 89999999999999999999999966 8999999999987654221
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. ..+.++++++....
T Consensus 77 ~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 77 H------ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred H------HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHH
Confidence 1 23456666655322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|......+.+.+.++.+.| +|++||+++
T Consensus 151 ~aL~~~P~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 151 RALVNDPDVLVLDEPTT---GLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred HHHhCCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999873
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-17 Score=138.80 Aligned_cols=121 Identities=20% Similarity=0.301 Sum_probs=94.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE------------EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccchh
Confidence 345667776667888998887 89999999999999999999999955 89999999999876543200
Q ss_pred cCCCCceeeeEEEEecCC----------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHH
Q 023887 216 SGRGKHTTRHVSLLPLSG----------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~----------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
. ....+.+.++++.. ..+++|||.. ++|......+.+.+.
T Consensus 71 ~---~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~---~LD~~~~~~l~~~l~ 144 (178)
T cd03229 71 L---PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTS---ALDPITRREVRALLK 144 (178)
T ss_pred H---HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHH
Confidence 0 01223444444432 1179999999 999999999999999
Q ss_pred HHhhc-c--eEEEeeeC
Q 023887 262 EVCAV-G--LLYMIHML 275 (276)
Q Consensus 262 ei~~~-~--ii~~~H~~ 275 (276)
++++. + ++++||++
T Consensus 145 ~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 145 SLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 99876 4 89999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-17 Score=142.68 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=92.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccCCHh
Confidence 356677777667899999988 89999999999999999999999965 89999999999876433211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ....++++++....
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 00 01123333332110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 147 al~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 147 ALATNPKFLLLDEPFA---GVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999998765 89999986
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-17 Score=140.95 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=91.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE------------RPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcCcCch-
Confidence 345667776667889999888 89999999999999999999999965 8999999999986643211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
....++++++...
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~ 143 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALAR 143 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 1122333333210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+. + ++++||++
T Consensus 144 al~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 144 ALAREPSLLLLDEPLS---ALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 079999999 99999999999999999763 5 99999986
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-17 Score=147.09 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=96.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+-+..+|+.-..++++++.+ +|++++++||||+|||||+|+|.| +|+|++|+|.++|+++...+++.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG------------~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG------------FYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc------------cccCCCceEEECCcccCCCCHHH
Confidence 45667777777889999988 899999999999999999999999 67999999999999988766543
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
-......+.++.....+++
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 1111122222221111110
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++++.+.+++.+.+.++++. | ++++.|||+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaA---Gln~~e~~~l~~~i~~i~~~~g~tillIEHdM~ 211 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAA---GLNPEETEELAELIRELRDRGGVTILLIEHDMK 211 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccC---CCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence 79999999 99999999999999999985 4 899999984
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-17 Score=136.36 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=93.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+ .
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~-~- 69 (173)
T cd03230 4 RNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL------------KPDSGEIKVLGKDIKKEP-E- 69 (173)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccch-H-
Confidence 44556665556788888887 89999999999999999999999965 899999999998765432 1
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------cEEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 217 GRGKHTTRHVSLLPLSGG--------------------------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~--------------------------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
.....++++++... .+++|||.. ++|....+.+.+.+.++.
T Consensus 70 ----~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 70 ----EVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTS---GLDPESRREFWELLRELK 142 (173)
T ss_pred ----hhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHH
Confidence 12234666665421 179999999 999999999999999998
Q ss_pred hcc--eEEEeeeC
Q 023887 265 AVG--LLYMIHML 275 (276)
Q Consensus 265 ~~~--ii~~~H~~ 275 (276)
+.| ++++||+.
T Consensus 143 ~~g~tiii~th~~ 155 (173)
T cd03230 143 KEGKTILLSSHIL 155 (173)
T ss_pred HCCCEEEEECCCH
Confidence 765 89999985
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-17 Score=151.89 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=98.0
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||+||||||++|+|.. +|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~------------~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT------------SPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCceEEEECCEECCcch
Confidence 34567888888878899999998 89999999999999999999999965 899999999998764321
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.++++++....
T Consensus 110 ~------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 110 R------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL 183 (340)
T ss_pred H------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHH
Confidence 1 122345555443211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+.| ++++||+++
T Consensus 184 A~aL~~~P~lLiLDEPt~---gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 184 ARALINDPQLLILDEPTT---GLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred HHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999873
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-17 Score=142.98 Aligned_cols=122 Identities=22% Similarity=0.278 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL------------RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccChh
Confidence 345667777667889999888 89999999999999999999999965 89999999999765432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. .+...+.++++++...
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0 0001112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 149 ~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 149 RALALDPELLLYDEPTA---GLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 079999999 99999999999999999863 5 99999986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=149.26 Aligned_cols=171 Identities=26% Similarity=0.323 Sum_probs=127.4
Q ss_pred ecccccccccchhccccEEEEEEEcCC-CCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-ee
Q 023887 62 VFQRSTEILDPPVANVDHLLLLFSMDQ-PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EP 139 (276)
Q Consensus 62 i~~R~~~~~r~~~anvD~vl~v~~~~~-p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~ 139 (276)
+.++...+.+.++..+|++++|+|.+. +...+..+.++| +..++|+++|+||+|-...+.. ...|+++|+ ++
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~L---r~~~kpviLvvNK~D~~~~e~~---~~efyslG~g~~ 142 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKIL---RRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGEP 142 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HhcCCCEEEEEEcccCchhhhh---HHHHHhcCCCCc
Confidence 444445556678999999999999975 334444677777 4667999999999998744332 356888999 79
Q ss_pred EEEecCCccchHHHHhhc------------c----CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee
Q 023887 140 LFCSVESKLGLDSLLQRL------------R----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l------------~----g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (276)
+.+|+.++.++.+|...+ . .-.+||+|.||||||||+|+|+|..+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~------------------ 204 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV------------------ 204 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE------------------
Confidence 999999999988876653 1 257999999999999999999997642
Q ss_pred eccccccccccccCCCCceeeeEEEEecCC---CcEEEecCCCCCCCC--ChhhHHHHHHHHHHHhhcc
Q 023887 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSL--LKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 204 ~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~~~iiDtPg~~~~~l--~~~~~~~l~~~f~ei~~~~ 267 (276)
-++..+| ||+..-..+... ...++||.|+|..+- +..+.-.+.++++.+....
T Consensus 205 -------Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 205 -------IVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred -------EecCCCC----ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 2334456 888777666653 337999999987774 3345556777888887766
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-17 Score=140.24 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=89.0
Q ss_pred eeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEcccCCH
Confidence 345666765 56788999887 89999999999999999999999965 8999999999876543210
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
.. ....++++++..
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 145 (211)
T cd03225 71 KE-----LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAI 145 (211)
T ss_pred HH-----HHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 00 011122222110
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 146 aral~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 146 AGVLAMDPDILLLDEPTA---GLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0079999999 999999999999999998765 99999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-16 Score=136.15 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=93.4
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+ ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL------------RPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEEcccCC
Confidence 3456666754 34688888887 89999999999999999999999965 899999999998775433
Q ss_pred cccCCCCceeeeEEEEecCC------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHH
Q 023887 214 TKSGRGKHTTRHVSLLPLSG------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei 263 (276)
... ....++++++.. ..+|+|||.. ++|......+.+.+.++
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNS---HLDVEGERALNQAIAAL 142 (173)
T ss_pred HHH-----HHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCcc---ccCHHHHHHHHHHHHHH
Confidence 211 223455555442 1289999999 99999999999999999
Q ss_pred hhcc--eEEEeeeC
Q 023887 264 CAVG--LLYMIHML 275 (276)
Q Consensus 264 ~~~~--ii~~~H~~ 275 (276)
.+++ +|++||++
T Consensus 143 ~~~~~tii~~sh~~ 156 (173)
T cd03246 143 KAAGATRIVIAHRP 156 (173)
T ss_pred HhCCCEEEEEeCCH
Confidence 8765 99999986
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=140.03 Aligned_cols=124 Identities=24% Similarity=0.306 Sum_probs=91.8
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD------------RPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc------------CCCceeEEECCEehhh
Confidence 3456677765 56789999888 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+.... .+...+.++++++...
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHH
Confidence 321000 0000112333332210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||+++
T Consensus 150 ~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 150 AIARALANDPKIILADEPTG---NLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred HHHHHHccCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 079999999 9999999999999999987 45 999999863
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=138.62 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~-- 68 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI------------KESSGSILLNGKPIKAKE-- 68 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEhhhHH--
Confidence 345667765 56788898887 89999999999999999999999965 899999999997653200
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++.+
T Consensus 69 ------~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 69 ------RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred ------hhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH
Confidence 111222222221
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 143 SGKDLLIFDEPTS---GLDYKNMERVGELIRELAAQGKAVIVITHDY 186 (205)
T ss_pred hCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 0079999999 999999999999999997665 99999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-17 Score=147.83 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=96.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
...+...|+ ....++++++.+ +|++++|+|+||||||||||+|+|.. .|++|+|.++|.+...-..
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~------------~p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL------------KPTSGEILVLGYDVVKEPA 74 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEEcCEeCccCHH
Confidence 457788898 688999999998 79999999999999999999999976 8999999999976543110
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
...+.++++++.+..
T Consensus 75 ------~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 75 ------KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred ------HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence 022334444443211
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
+++|||+. +||+....++.+.+.++.+.+ |+++||.+
T Consensus 149 ~aL~~~P~lliLDEPt~---GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 149 LALLHDPELLILDEPTS---GLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred HHHhcCCCEEEECCCCc---CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 79999999 999999999999999999975 89999986
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=139.43 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=91.1
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| .+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL------------TPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcccCCH
Confidence 34566677 3456789999888 89999999999999999999999965 8999999999987643221
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
... ....+.++++++...
T Consensus 72 ~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 72 RQL--PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred HHH--HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 000 001122333332210
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 150 ~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTG---NLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHhCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999997665 99999986
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-16 Score=139.71 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=92.5
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEEccc
Confidence 35567777654 6889999888 89999999999999999999999965 8999999999987643
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
... ...+.++++++....
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 110 012234444433211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 146 ~laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTT---GLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999997665 99999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=138.11 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=94.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP----------KYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCCccEEEECCEECCcCCHH
Confidence 345667777667889999888 89999999999999999999999963 1379999999999877654321
Q ss_pred cCCCCceeeeEEEEecCC-------------------------------------CcEEEecCCCCCCCCChhhHHHHHH
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------GGYLADTPGFNQPSLLKVTKQSLAQ 258 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~ 258 (276)
.. ....+.++++.. ..+++|+|.. ++|....+.+.+
T Consensus 73 ~~----~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~---~LD~~~~~~l~~ 145 (200)
T cd03217 73 ER----ARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS---GLDIDALRLVAE 145 (200)
T ss_pred HH----hhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHH
Confidence 10 112344444432 1179999999 999999999999
Q ss_pred HHHHHhhcc--eEEEeeeC
Q 023887 259 TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 259 ~f~ei~~~~--ii~~~H~~ 275 (276)
.+.++.+.+ ++++||++
T Consensus 146 ~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 146 VINKLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHHCCCEEEEEecCH
Confidence 999997655 89999986
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=139.55 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=91.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL------------KPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecCcChHH
Confidence 345667777667889999888 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++....
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~ 144 (220)
T cd03265 71 ------VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIAR 144 (220)
T ss_pred ------HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHH
Confidence 11223333332110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 145 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 145 SLVHRPEVLFLDEPTI---GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHhcCCCEEEEcCCcc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 89999986
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=140.43 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCCCCHH
Confidence 345666776666788888887 89999999999999999999999965 89999999999765432211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.. ..+.++++++...
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 71 ER----ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HH----HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 00 0112233322210
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 147 l~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 147 LMSRPKLLLLDEPSE---GLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HhcCCCEEEECCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999998655 99999986
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=138.10 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=92.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE------------EPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCcc
Confidence 345667777667889999887 89999999999999999999999965 89999999999876432211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++++++....
T Consensus 71 -------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 71 -------DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred -------cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHH
Confidence 1234444433210
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 144 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 144 AIVREPKVFLMDEPLS---NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999864 5 99999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=139.99 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=91.2
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE------------KPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEehhhcC
Confidence 3556677753 34788999888 89999999999999999999999965 899999999998764322
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
...- ....+.++++++....
T Consensus 72 ~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 72 GREI--PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hhHH--HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 1000 0011223333332100
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 150 aral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTG---NLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999997665 99999986
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=138.20 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=90.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE------------EPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccchh
Confidence 355677777667889999888 89999999999999999999999965 89999999999765310000
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.+...+.++++++..
T Consensus 71 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 71 ---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred ---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 000011122222110
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 148 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 148 RALAMNPKVMLFDEPTS---ALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0179999999 999999999999999998765 89999986
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-16 Score=146.72 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=93.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 73 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI------------SPDRGKITVLGEPVPSRAR- 73 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcccHH-
Confidence 456777887777899999998 89999999999999999999999965 8999999999876532110
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.....++++++...
T Consensus 74 -----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 74 -----LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred -----HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 01122333333211
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 149 al~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 149 ALINDPQLLILDEPTT---GLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred HHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 079999999 999999999999999998766 99999986
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=138.30 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=91.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.... .
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~-~- 69 (208)
T cd03268 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI------------KPDSGEITFDGKSYQKNI-E- 69 (208)
T ss_pred EEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCCcccchH-H-
Confidence 45667776667899999887 89999999999999999999999965 899999999998654320 0
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
..+.++++++....
T Consensus 70 -----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 70 -----ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred -----HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 11223333332110
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 145 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 145 PDLLILDEPTN---GLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred CCEEEECCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 79999999 999999999999999998765 89999986
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=141.07 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=100.4
Q ss_pred ceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-cc
Q 023887 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (276)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-vs 213 (276)
++.+.++|.+. ..++++++.+ +|+.++++|+||+|||||+++|.|.. +|++|+|.++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl------------~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL------------KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC------------cCCCCEEEECCeeccchhh
Confidence 45677778765 7888999888 79999999999999999999999976 9999999999988763 11
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.. ..++.+++++|.+..
T Consensus 74 ~~-----~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva 148 (235)
T COG1122 74 LL-----ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA 148 (235)
T ss_pred HH-----HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH
Confidence 11 155677888886522
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. ++|....+++.+.+.++.+. + +|++|||++
T Consensus 149 IA~vLa~~P~iliLDEPta---~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTA---GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred hhHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 79999999 99999999999999999988 3 999999974
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-17 Score=142.53 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=106.4
Q ss_pred CceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.++.+...| ++..+++++++.+ +|+.++++|+||+||||||++|.|.. +|++|+|.++|.++....
T Consensus 5 ~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKLK 72 (258)
T ss_pred EEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhccc
Confidence 356778888 7788999999998 89999999999999999999999955 999999999998877665
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.+. -+..+++++|++|.+++
T Consensus 73 ~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG 150 (258)
T COG3638 73 GKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG 150 (258)
T ss_pred hHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc
Confidence 322 23467899999998765
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
++.|||-. +||+.+.+.+.+.+.++.++ | +++..|+++
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPva---sLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVA---SLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCccc---ccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 69999999 99999999999999999985 5 899999864
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=139.75 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=92.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL------------PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 345667777667899999988 89999999999999999999999965 89999999998776433211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ..+.++++++....
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 71 ER----ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred HH----HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 00 11233343332211
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 147 ~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 147 VTRPKLLLLDEPTE---GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred hcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 79999999 99999999999999999874 4 89999986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=133.41 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.+.|.+. ..++++++.+ +|++++++|+||+|||||+++|+|.. +|++|+++++|.++...+.
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 4 KNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY------------DPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhhhcCH
Confidence 4556666554 5788888887 89999999999999999999999965 8999999999987654321
Q ss_pred ccCCCCceeeeEEEEecC------------------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 215 KSGRGKHTTRHVSLLPLS------------------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~------------------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
.. ..+.+.++++. +..+++|||.. ++|....+.+.+.+.++.
T Consensus 72 ~~-----~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 72 ES-----LRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATS---ALDPETEALILEALRALA 143 (171)
T ss_pred HH-----HHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCc---CCCHHHHHHHHHHHHHhc
Confidence 11 12234444332 12389999999 999999999999999986
Q ss_pred hcc-eEEEeeeC
Q 023887 265 AVG-LLYMIHML 275 (276)
Q Consensus 265 ~~~-ii~~~H~~ 275 (276)
+.. ++++||++
T Consensus 144 ~~~tii~~sh~~ 155 (171)
T cd03228 144 KGKTVIVIAHRL 155 (171)
T ss_pred CCCEEEEEecCH
Confidence 533 89999986
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-17 Score=139.33 Aligned_cols=123 Identities=18% Similarity=0.124 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
|+.+.++|++...+.+. +.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|..++-+...
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~q~ 69 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL------------IPNGDNDEWDGITPVYKPQY 69 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCcEEEECCEEEEEEccc
Confidence 56677888777666664 455 89999999999999999999999965 89999999999765544322
Q ss_pred cCCCCceeee---EEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c-eEEEeeeC
Q 023887 216 SGRGKHTTRH---VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G-LLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~---~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~-ii~~~H~~ 275 (276)
........+. ...+..++..+++|||.. ++|....+.+.+.+.++.+. . ++++||++
T Consensus 70 ~~LSgGq~qrv~laral~~~p~lllLDEPts---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSA---YLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 1100001111 112222456799999999 99999999999999998764 2 89999986
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=148.91 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=102.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+..+|++...++++++.+ +|+.++|+|||||||||||++|+|.. .|++|+|.++|+++..+++
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe------------~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE------------QPSSGEILLDGEDITDVPP 74 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCh
Confidence 3567889999888999999998 89999999999999999999999955 9999999999999999875
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+.+++|+..+
T Consensus 75 -------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 75 -------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred -------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence 45678888886533
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. .||..-++++...+.++.+. | .|++|||-
T Consensus 148 ARAL~~~P~vLLLDEPlS---aLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 148 ARALVPEPKVLLLDEPLS---ALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHhhcCcchhhhcCccc---chhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 69999999 89988888888888888875 6 89999984
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-16 Score=137.14 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=88.4
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE------------RPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcc
Confidence 3456677765 56789999888 89999999999999999999999965 8999999999876532
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.. ..++++++..
T Consensus 71 ~~----------~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 140 (220)
T cd03293 71 PG----------PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140 (220)
T ss_pred cc----------CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 11 1122222110
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 141 ~la~al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFS---ALDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred HHHHHHHcCCCEEEECCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 0179999999 99999999999999998653 4 89999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=134.80 Aligned_cols=118 Identities=21% Similarity=0.341 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS------------PPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccccH-
Confidence 355677777667889999887 89999999999999999999999965 8999999999877542211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 011223333322100
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||+.
T Consensus 145 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 145 PLWILDEPTT---ALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 79999999 999999999999999987765 89999974
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=135.75 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA------------RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEcccchHH
Confidence 345667776667889999988 89999999999999999999999965 89999999999775432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++..
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHh
Confidence 011122221110
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 146 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 146 TRAPLWILDEPFT---AIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 0179999999 999999999999999997665 999999863
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-16 Score=151.60 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=94.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+||||||++|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll------------~p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL------------TPTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEEcCcCCHH
Confidence 466778888878899999998 89999999999999999999999966 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ..+.++++++..
T Consensus 74 ~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 74 A-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred H-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 1 112222222210
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. +||...+.++.+.+.++.+.+ +|++||+++
T Consensus 149 ~IArAL~~~P~iLLLDEPts---gLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTA---SLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 0079999999 999999999999999998765 899999864
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-16 Score=145.29 Aligned_cols=148 Identities=27% Similarity=0.340 Sum_probs=117.2
Q ss_pred chhccccEEEEEEEcCCC-CCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeE------EEec
Q 023887 72 PPVANVDHLLLLFSMDQP-KLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL------FCSV 144 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p-~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~------~~s~ 144 (276)
..+..+|+++.|+|+++| ...+..+++||.. +...+..+.|+||+||+|......|...+.+. |+.+ .-+|
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSke-yPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE-YPTIAFHASINNSF 286 (572)
T ss_pred HhhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhh-CcceeeehhhcCcc
Confidence 478999999999999999 5778899999965 56688999999999999999999999887653 3332 2234
Q ss_pred CCccchHHHHhh--c----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 145 ESKLGLDSLLQR--L----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 145 ~~~~~l~~l~~~--l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+++..++-|... + +...++|||.||+||||+||+|.. ++++.+.+-+|
T Consensus 287 GKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~-------------------------KkVCkvAPIpG- 340 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK-------------------------KKVCKVAPIPG- 340 (572)
T ss_pred chhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhh-------------------------cccccccCCCC-
Confidence 444444444432 2 345799999999999999999997 56788877777
Q ss_pred CCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
-|.--+|+.+..+.+|||+||+..|+-|.
T Consensus 341 ---ETKVWQYItLmkrIfLIDcPGvVyps~ds 369 (572)
T KOG2423|consen 341 ---ETKVWQYITLMKRIFLIDCPGVVYPSSDS 369 (572)
T ss_pred ---cchHHHHHHHHhceeEecCCCccCCCCCc
Confidence 77777888888899999999998777654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=137.08 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=88.2
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 4 ~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~---- 67 (210)
T cd03269 4 ENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII------------LPDSGEVLFDGKPLDIA---- 67 (210)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCCchhHH----
Confidence 45666676666788888887 89999999999999999999999965 89999999998765320
Q ss_pred CCCCceeeeEEEEecCC---------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSG--------------------------------------------------------------- 233 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~--------------------------------------------------------------- 233 (276)
....++++++..
T Consensus 68 -----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 68 -----ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred -----HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 001122222110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 l~~~p~~lllDEP~~---~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 143 VIHDPELLILDEPFS---GLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 0179999999 999999999999999987655 99999985
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-16 Score=139.50 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=91.3
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE------------RPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 34566677654 6889999888 89999999999999999999999965 8999999999987643
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- ....+.++++++....
T Consensus 72 ~~~~~~--~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 72 LSGKEL--RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV 149 (233)
T ss_pred CCHHHH--HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH
Confidence 211000 0011223333322110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|......+.+.+.++.+. + +|++||++
T Consensus 150 ~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 150 GIARALANNPKVLLCDEATS---ALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHhcCCCEEEecCCCC---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=136.76 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=89.9
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..+.....
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE------------KFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccchhhH
Confidence 4556676667889999887 89999999999999999999999965 8999999999987532211000
Q ss_pred CCCceeeeEEEEecCCC---------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGG--------------------------------------------------------------- 234 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~--------------------------------------------------------------- 234 (276)
.....+.++++++...
T Consensus 71 -~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 71 -SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred -HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0001122333332210
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||.. ++|..+.+.+.+.+.++.+.+ ++++||++
T Consensus 150 ~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 150 LKDPPLILADEPTG---SLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HcCCCEEEEeCCcC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 999999999999999997655 89999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=153.22 Aligned_cols=119 Identities=26% Similarity=0.292 Sum_probs=103.7
Q ss_pred eeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.+.|.++ ..+.++++.+ +|+.++++|+||+|||||+|+|+|.. +|++|+|.+||.+..+++..
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~------------~~~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL------------APTQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCccccccCHH
Confidence 3677788776 7899999998 89999999999999999999999965 99999999999999888754
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
. ..+++++++|.+..
T Consensus 392 ~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 392 A-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred H-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence 4 66778888776532
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. ++++||.++
T Consensus 467 LARAll~~~~l~llDEpTA---~LD~etE~~i~~~l~~l~~~ktvl~itHrl~ 516 (559)
T COG4988 467 LARALLSPASLLLLDEPTA---HLDAETEQIILQALQELAKQKTVLVITHRLE 516 (559)
T ss_pred HHHHhcCCCCEEEecCCcc---CCCHhHHHHHHHHHHHHHhCCeEEEEEcChH
Confidence 79999999 999999999999999999877 999999864
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=155.42 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=101.3
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG------------LLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhhH
Confidence 456778888865 35799999998 899999999999999999999999 5699999999999998877
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
... .+.++++++|++..
T Consensus 403 -~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 403 -QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred -HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 443 66778888887532
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||.+
T Consensus 477 QRiaiARall~~~~iliLDE~TS---aLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTE---HLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 79999999 999999999999888875443 99999975
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=135.34 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL------------NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeeEEECCCccccCHHH
Confidence 355677777777899999988 89999999999999999999999965 89999999999765421100
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 72 ------~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 72 ------YQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred ------HHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 1112222222110
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++++.+ +|++||+.
T Consensus 146 p~~lilDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 146 AKLWLLDEPLV---ALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred CCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 079999999 999999999999999987665 99999986
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=146.30 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=87.0
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.. .
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~------~ 64 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL------------RPTSGTARVAGYDVVREPRK------V 64 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCHHH------H
Confidence 44455788888887 89999999999999999999999965 89999999999765321100 1
Q ss_pred eeeEEEEecCCCc-------------------------------------------------------------------
Q 023887 223 TRHVSLLPLSGGG------------------------------------------------------------------- 235 (276)
Q Consensus 223 t~~~~~~~~~~~~------------------------------------------------------------------- 235 (276)
.+.++++++....
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 1223333332111
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+.| +|++||+++
T Consensus 145 lllLDEPt~---gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 145 VLFLDEPTT---GLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred EEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999863
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=137.18 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=91.1
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE------------LPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcccCCH
Confidence 3456677754 46788888887 89999999999999999999999965 8999999999986643211
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
..- ....+.++++++...
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 000 001122333333211
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 149 ral~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 149 RAIVNSPTILIADEPTG---NLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999997665 99999985
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=147.79 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=97.2
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| .+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...++
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE------------RITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 45677777 5667889999988 89999999999999999999999966 8999999999998765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 74 -------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 74 -------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred -------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 12456666665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 147 RAL~~~P~llLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 147 RAIVREPAVFLFDEPLS---NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 99999986
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=137.66 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=90.1
Q ss_pred eeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++| .....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE------------RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCChh
Confidence 4556666 4456788998887 89999999999999999999999955 89999999999766432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.- +...+.++++++...
T Consensus 73 ~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 73 EV--PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HH--HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 00 001122333332210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 151 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 151 AVVNKPAVLLADEPTG---NLDDALSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999997655 99999986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-16 Score=138.98 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI------------DPTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhcChH
Confidence 456667776667889999888 89999999999999999999999965 89999999999775432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. .+..++++++..
T Consensus 74 ~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 74 D-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred H-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 0 011122222211
Q ss_pred --CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 --GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 --~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. | +|++||++
T Consensus 149 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 149 NPEVLLLDEPTS---ALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred CCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 0179999999 99999999999999999764 5 99999986
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-16 Score=141.58 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=98.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.++.+|++...++++++.+ +|++.+++|+||+||||.+++|+|.. +|++|+|.++|.++...
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll------------e~~~G~I~~~g~~~~~~--- 69 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL------------EPTEGEITWNGGPLSQE--- 69 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC------------CccCceEEEcCcchhhh---
Confidence 456788899999999999998 89999999999999999999999976 99999999999876542
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.+..++|+|-..++
T Consensus 70 ------~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 70 ------IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred ------hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHH
Confidence 22334444433222
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|+|.. +||++..+-|.+...++++.| ||++||.|.
T Consensus 144 aviHePeLlILDEPFS---GLDPVN~elLk~~I~~lk~~GatIifSsH~Me 191 (300)
T COG4152 144 AVIHEPELLILDEPFS---GLDPVNVELLKDAIFELKEEGATIIFSSHRME 191 (300)
T ss_pred HHhcCCCEEEecCCcc---CCChhhHHHHHHHHHHHHhcCCEEEEecchHH
Confidence 79999999 999999999999999999998 999999873
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-16 Score=142.86 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=93.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY------------LPQRGRVKVMGREVNAENE 74 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEECCCCCH
Confidence 456777775 456789999887 89999999999999999999999965 8999999999987643221
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
.. ....++++++.+.
T Consensus 75 ~~-----~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 75 KW-----VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred HH-----HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHH
Confidence 10 1223444444320
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++++.| ++++||+++
T Consensus 150 araL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMA---YLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred HHHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 079999999 999999999999999998765 999999863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-16 Score=137.89 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=91.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY------------VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcccCChh
Confidence 345666776667889999887 89999999999999999999999965 89999999999766432210
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++....
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lar 145 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIAR 145 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 11123333332100
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+ .+ ++++||+++
T Consensus 146 al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 146 ALLHRPALLLLDEPTV---GLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred HHhcCCCEEEEcCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 79999999 9999999999999999975 35 999999863
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-16 Score=135.71 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=90.6
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK- 215 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~- 215 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL------------KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCcCCHHH
Confidence 44566676656788888887 89999999999999999999999965 89999999999876432210
Q ss_pred --------------cCCCCceeeeEEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-
Q 023887 216 --------------SGRGKHTTRHVSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV- 266 (276)
Q Consensus 216 --------------~g~gk~tt~~~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~- 266 (276)
.+......+....++ .++..+++|||.. ++|..+.+.+.+.+.++.++
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~---~LD~~~~~~~~~~l~~~~~~~ 147 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS---HLDIAHQIELLELLRRLARER 147 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhc
Confidence 011111111111111 1123389999999 99999999999999999875
Q ss_pred c--eEEEeeeC
Q 023887 267 G--LLYMIHML 275 (276)
Q Consensus 267 ~--ii~~~H~~ 275 (276)
+ +|++||++
T Consensus 148 ~~tiii~sh~~ 158 (180)
T cd03214 148 GKTVVMVLHDL 158 (180)
T ss_pred CCEEEEEeCCH
Confidence 4 89999986
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-16 Score=135.99 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=89.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +| +++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~-~ 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT------------PPSSGTIRIDGQDVLKQP-Q 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCCccccch-H
Confidence 345666776667899999988 78 99999999999999999999965 899999999997654321 0
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 143 (211)
T cd03264 69 -----KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ 143 (211)
T ss_pred -----HHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHH
Confidence 011223333322110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 144 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 189 (211)
T cd03264 144 ALVGDPSILIVDEPTA---GLDPEERIRFRNLLSELGEDRIVILSTHIV 189 (211)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999997644 99999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=137.71 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=89.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE------------RPDSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCcc
Confidence 456777787777899999988 89999999999999999999999965 8999999999876532211
Q ss_pred ---------ccCCCCcee--eeEEE----Ee----------------------cC-------------------------
Q 023887 215 ---------KSGRGKHTT--RHVSL----LP----------------------LS------------------------- 232 (276)
Q Consensus 215 ---------~~g~gk~tt--~~~~~----~~----------------------~~------------------------- 232 (276)
.+..-.+.| ..+.+ .. +.
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 000000000 00000 00 00
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 153 ~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 153 VEPKVLLLDEPFG---ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred cCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 00079999999 99999999999999999864 5 89999986
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=142.16 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=92.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL------------RPQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEECCcccc
Confidence 456677774 345889999888 89999999999999999999999965 8999999999987653321
Q ss_pred ccCCCCceeeeEEEEecCCC--c---------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG--G--------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~--~--------------------------------------------------------- 235 (276)
.. .....++++++.+. .
T Consensus 72 ~~----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 72 LQ----GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred HH----HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHH
Confidence 00 01223344333210 0
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+.| ++++||+++
T Consensus 148 aral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 148 AGILTMEPECLIFDEVTS---MLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred HHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 999999999999999998766 999999863
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=138.66 Aligned_cols=120 Identities=17% Similarity=0.326 Sum_probs=91.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP------------RATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEecCCCCHH
Confidence 456667776667889999888 89999999999999999999999965 89999999999765432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. ...+.++++++...
T Consensus 76 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 K----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred H----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 0 00112222222110
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 152 l~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 152 LMSQPRLLLLDEPSL---GLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHhCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 079999999 999999999999999998765 89999986
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-16 Score=136.33 Aligned_cols=123 Identities=23% Similarity=0.266 Sum_probs=90.4
Q ss_pred eeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 5 ~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD------------NPTSGEVLFNGQSLSKL 72 (221)
T ss_pred EeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhc
Confidence 456666753 34788888887 89999999999999999999999965 89999999999876543
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+..... .-....++++++....
T Consensus 73 ~~~~~~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 73 SSNERA-KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA 151 (221)
T ss_pred CHhHHH-HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 211000 0000123333332100
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 152 laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTG---NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHhCCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999763 4 999999863
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-16 Score=136.16 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=90.2
Q ss_pred eeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 4 ~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~- 70 (220)
T cd03263 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL------------RPTSGTAYINGYSIRTDR- 70 (220)
T ss_pred EeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccch-
Confidence 456667765 56789999888 89999999999999999999999965 899999999998754211
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
....+.++++++....
T Consensus 71 -----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 71 -----KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred -----HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence 0112233333332110
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 146 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 192 (220)
T cd03263 146 IALIGGPSVLLLDEPTS---GLDPASRRAIWDLILEVRKGRSIILTTHSM 192 (220)
T ss_pred HHHhcCCCEEEECCCCC---CCCHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 999999999999999987633 99999986
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-16 Score=134.99 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=87.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc------
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG------ 210 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~------ 210 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL------------KPTSGSIRVFGKPLEKERKRI 70 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCccHHHHHhhe
Confidence 34556666666789999888 89999999999999999999999965 899999999986532
Q ss_pred -ccccccCCCC--cee--eeEEE--------------------------Eec---------------------------C
Q 023887 211 -EVSTKSGRGK--HTT--RHVSL--------------------------LPL---------------------------S 232 (276)
Q Consensus 211 -~vs~~~g~gk--~tt--~~~~~--------------------------~~~---------------------------~ 232 (276)
-+...+.... ..| ..+.+ +.+ +
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 1111111000 000 00000 000 0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 151 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 151 PDLLLLDEPFA---GVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred CCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 01179999999 999999999999999998665 999999863
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-16 Score=139.10 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV------------PRDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 345666776667889999888 89999999999999999999999965 89999999998765332110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.. ....++++++..
T Consensus 74 ~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 74 AR----ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred HH----HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence 00 000111111110
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 150 ral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 150 RALAANPKFILLDEPFA---GVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 0079999999 999999999999999998766 99999986
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=152.08 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=98.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|+.-..|+++++.+ +|++.+++|.||+||||||+.|.|. |+|++|+|+++|+++...++.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv------------~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV------------YPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc------------ccCCCceEEECCEEccCCCHH
Confidence 456788998889999999998 9999999999999999999999994 599999999999987654433
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ....+.++.|+..+
T Consensus 79 ~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 79 DA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred HH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence 22 22333333333211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||+. .|...+.+.|.+.+.+++++| +|++||.|+
T Consensus 155 eIArAl~~~arllIlDEPTa---aLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 155 EIARALSFDARVLILDEPTA---ALTVKETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 79999999 999888999999999999998 999999874
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-16 Score=132.93 Aligned_cols=117 Identities=25% Similarity=0.321 Sum_probs=89.3
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 4 ~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~- 70 (178)
T cd03247 4 NNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL------------KPQQGEITLDGVPVSDLE- 70 (178)
T ss_pred EEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCEEHHHHH-
Confidence 4556666543 5788888887 89999999999999999999999965 899999999998765321
Q ss_pred ccCCCCceeeeEEEEecCC---------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHH
Q 023887 215 KSGRGKHTTRHVSLLPLSG---------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~---------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
.. ..+.++++++.+ ..+++|||.. ++|....+.+.+.+.
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~---~LD~~~~~~l~~~l~ 142 (178)
T cd03247 71 KA-----LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTV---GLDPITERQLLSLIF 142 (178)
T ss_pred HH-----HHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHH
Confidence 10 112333333321 1289999999 999999999999999
Q ss_pred HHhhcc-eEEEeeeC
Q 023887 262 EVCAVG-LLYMIHML 275 (276)
Q Consensus 262 ei~~~~-ii~~~H~~ 275 (276)
++.+.. ++++||++
T Consensus 143 ~~~~~~tii~~sh~~ 157 (178)
T cd03247 143 EVLKDKTLIWITHHL 157 (178)
T ss_pred HHcCCCEEEEEecCH
Confidence 986423 89999986
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-16 Score=134.65 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=90.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~i~~~~-- 79 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL------------HVESGQIQIDGKTATRGD-- 79 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCeeEEECCEEccchh--
Confidence 456667776667889999888 89999999999999999999999955 899999999987653210
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++.+
T Consensus 80 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 80 ------RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred ------hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 001122222110
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 154 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 154 SPAPLWLLDEPYA---NLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred cCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 0179999999 999999999999999987765 999999863
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=132.58 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=90.4
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~- 70 (198)
T TIGR01189 4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL------------RPDSGEVRWNGTALAEQRDE- 70 (198)
T ss_pred EEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccchHH-
Confidence 45666777667889999888 89999999999999999999999955 89999999999865432210
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 71 -----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 71 -----PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred -----hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 1122233322110
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||+.
T Consensus 146 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 146 APLWILDEPTT---ALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred CCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 079999999 999999999999999987665 99999975
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-16 Score=145.95 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=98.3
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++..
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~------------~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCc
Confidence 4556677742 25789999988 89999999999999999999999966 8999999999998766
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... -+..++.+++++|....
T Consensus 72 ~~~~~--l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 72 LSNSE--LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149 (343)
T ss_pred CCHHH--HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 53211 01124567777775422
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|..+...+.+++.++.+. + ++++||+++
T Consensus 150 ~IARAL~~~P~iLLlDEPts---~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATS---ALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-16 Score=143.72 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=98.9
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++.+++|+||+|||||++++.+.. +|++|+|.++|+++..++... -+..++.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le------------~PtsG~v~v~G~di~~l~~~~--Lr~~R~~I 85 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE------------RPTSGSVFVDGQDLTALSEAE--LRQLRQKI 85 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC------------CCCCceEEEcCEecccCChHH--HHHHHhhc
Confidence 4688888888 89999999999999999999999977 999999999999988876533 24577899
Q ss_pred EEEecCCCc--------------------------------------------------------------------EEE
Q 023887 227 SLLPLSGGG--------------------------------------------------------------------YLA 238 (276)
Q Consensus 227 ~~~~~~~~~--------------------------------------------------------------------~ii 238 (276)
+|++|.+++ +++
T Consensus 86 GMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~ 165 (339)
T COG1135 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165 (339)
T ss_pred cEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence 999998755 699
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
|||+. .||+.+.+.+.+++.++.+. | |+++||.|+
T Consensus 166 DEaTS---ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 166 DEATS---ALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred cCccc---cCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 99999 99999999999999999975 7 999999874
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-16 Score=147.40 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=95.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 5 ~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~------------~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------DITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887767889999888 89999999999999999999999965 8999999999987654321
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 73 -------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 73 -------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (369)
T ss_pred -------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 11345555554211
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+.+.+.+.++.+. + +|++||++
T Consensus 146 raL~~~P~lLLLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLS---NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-16 Score=137.04 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=88.2
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc--
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-- 214 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~-- 214 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEECCCCCHHH
Confidence 45666776666889999888 89999999999999999999999965 8999999999876543211
Q ss_pred -----------ccCCCCcee--eeEEE--------------------------------EecC-----------------
Q 023887 215 -----------KSGRGKHTT--RHVSL--------------------------------LPLS----------------- 232 (276)
Q Consensus 215 -----------~~g~gk~tt--~~~~~--------------------------------~~~~----------------- 232 (276)
....-...| ..+.+ +.+.
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 000000000 00000 0000
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 152 v~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAA---GLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 00079999999 999999999999999998665 89999986
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-16 Score=140.52 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.... .
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~-~ 70 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL------------RPQKGAVLWQGKPLDYSK-R 70 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCccEEEECCEEccccc-C
Confidence 456777887667899999988 89999999999999999999999965 899999999998753100 0
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.. ....+.++++++...
T Consensus 71 ~~--~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 71 GL--LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred CH--HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 00 000112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 149 raL~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 149 GALVLQARYLLLDEPTA---GLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999998665 89999986
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-16 Score=146.33 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=94.7
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE------------RPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCc
Confidence 456677776 245788999888 89999999999999999999999965 8999999999987754
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- +...+.++++++....
T Consensus 72 ~~~~~~--~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 72 LSEKEL--RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred CCHHHH--HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 332110 0012345555543211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|......+.+.+.++.+. + +|++||+++
T Consensus 150 ~lAraL~~~p~iLlLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 150 AIARALASNPKVLLCDEATS---ALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-16 Score=137.39 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=91.5
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++..
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNGQPMSK 75 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCc
Confidence 4556667753 35788888887 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- .....+.++++++....
T Consensus 76 ~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 76 LSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV 154 (233)
T ss_pred CCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 321100 00001223333332110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+ .| +|++||+++
T Consensus 155 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTG---NLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 9999999999999999975 35 899999863
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-16 Score=136.29 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=100.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
..+.+.+.|++...+++++..+ +++++||+|||||||||||++|-...... -..-.+|+|.++|+++....-
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~-------~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI-------PGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred EecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC-------cCceEEEEEEECCeeccCCCC
Confidence 3456788899999999999998 78999999999999999999998855100 001234999999998876421
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
.. -..++.++|++|.++-
T Consensus 82 d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 82 DV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 11 1156788899886532
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. .||+++...+.+++.|+++.= |+++||+|
T Consensus 159 cIARalAv~PeVlLmDEPtS---ALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTS---ALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHHHHhcCCcEEEecCccc---ccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 69999999 999999999999999999753 99999987
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-16 Score=149.75 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=99.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
.-+++.|..-...+++++.+ +|++.+++|.||+|||||||+|.| +|+|++|+|.++|+++.--++..
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G------------~~~P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG------------LYQPDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC------------cccCCcceEEECCEEeccCCHHH
Confidence 34566676666678888887 899999999999999999999999 56999999999999987766554
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
. ....++|+.|.+.+
T Consensus 76 A----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 76 A----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred H----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 3 45566777665422
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||+. -|.+.+.+++.+.+..+++.| ||++||-++
T Consensus 152 lKaLyr~a~iLILDEPTa---VLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 152 LKALYRGARLLILDEPTA---VLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 69999998 888889999999999999998 999999763
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-16 Score=132.30 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=84.5
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.. .... .+...+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~-~~~~--~~~~~~ 68 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL------------RPQSGAVLIDGEPLDY-SRKG--LLERRQ 68 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEECCEEccc-cccc--hHHHHh
Confidence 345678888887 89999999999999999999999965 8999999999977531 1000 000112
Q ss_pred eEEEEecCCC---------------------------------------------------------------------c
Q 023887 225 HVSLLPLSGG---------------------------------------------------------------------G 235 (276)
Q Consensus 225 ~~~~~~~~~~---------------------------------------------------------------------~ 235 (276)
.++++++... .
T Consensus 69 ~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 148 (190)
T TIGR01166 69 RVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV 148 (190)
T ss_pred hEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2333332210 0
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 149 lllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 149 LLLDEPTA---GLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 79999999 999999999999999998765 999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-16 Score=132.79 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=85.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++........ ..+.+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~----~~~~i~ 78 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR------------PPASGEITLDGKPVTRRSPRDA----IRAGIA 78 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccCHHHH----HhCCeE
Confidence 677888777 89999999999999999999999965 8999999999987654321100 122344
Q ss_pred EEecCC---------------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-
Q 023887 228 LLPLSG---------------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG- 267 (276)
Q Consensus 228 ~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~- 267 (276)
++++.. ..+++|||.. ++|....+.+.+.+.++.+.+
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTR---GVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCc---CCCHHHHHHHHHHHHHHHHCCC
Confidence 444321 1179999999 999999999999999997655
Q ss_pred -eEEEeeeC
Q 023887 268 -LLYMIHML 275 (276)
Q Consensus 268 -ii~~~H~~ 275 (276)
+|++||++
T Consensus 156 tiii~sh~~ 164 (182)
T cd03215 156 AVLLISSEL 164 (182)
T ss_pred EEEEEeCCH
Confidence 89999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-16 Score=137.06 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=53.4
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 66 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDGTDIN 66 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEecc
Confidence 3556777765 56889999888 89999999999999999999999965 899999999987654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-16 Score=137.84 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=91.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE------------EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCChh
Confidence 355667776667889999888 89999999999999999999999965 89999999999776431100
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. +...+.++++++...
T Consensus 72 ~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 72 E---RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred H---HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 0 001112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 149 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 149 RALAVKPKLMLFDEPTS---ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 079999999 999999999999999998665 999999863
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-16 Score=134.18 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..+....
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~-- 70 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL------------PPAAGTIKLDGGDIDDPD-- 70 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEeCcchh--
Confidence 456677777667899999888 89999999999999999999999965 899999999987542100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
....++++++.
T Consensus 71 ------~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 71 ------VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred ------hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc
Confidence 00011111100
Q ss_pred -CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 -GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 -~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+++ ++++||+++
T Consensus 145 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 145 NRPIWILDEPTA---ALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred CCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 00179999999 999999999999999987766 999999863
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-16 Score=138.62 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=90.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL------------RPDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEEcccCCHH
Confidence 456677777777899999888 89999999999999999999999965 8999999999876543211
Q ss_pred -----------ccCCCCcee--eeEEE--------EecC-----------------------------------------
Q 023887 215 -----------KSGRGKHTT--RHVSL--------LPLS----------------------------------------- 232 (276)
Q Consensus 215 -----------~~g~gk~tt--~~~~~--------~~~~----------------------------------------- 232 (276)
....-...| .++.+ ....
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 000000000 00000 0000
Q ss_pred ----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 ----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 152 l~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 152 LAQEPKLLLLDEPTN---HLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred HhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00079999999 999999999999999998765 999999863
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-16 Score=134.93 Aligned_cols=122 Identities=24% Similarity=0.316 Sum_probs=88.3
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 34566677543 5789999888 89999999999999999999999965 8999999999876543
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.+... .....+.++++++..
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 22100 000000111111100
Q ss_pred ---------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ---------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ---------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTS---ALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0079999999 99999999999999999865 5 89999986
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-16 Score=145.94 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=97.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE------------KPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887767788999888 89999999999999999999999965 9999999999988765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 76 -------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 76 -------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred -------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 22456666665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+++.+.+.++.+. + +|++|||+
T Consensus 149 RaL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 149 RALILKPKVLLFDEPLS---NLDANLRRSMREKIRELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999986
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-16 Score=135.40 Aligned_cols=123 Identities=25% Similarity=0.261 Sum_probs=90.1
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~ 76 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVGQPLHQ 76 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeeEEECCEEccc
Confidence 45566777542 4788999888 89999999999999999999999965 8999999999987644
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
..... ..+.....++++++...
T Consensus 77 ~~~~~-~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 77 MDEEA-RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155 (228)
T ss_pred CCHHH-HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH
Confidence 32110 00000012232222210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTG---NLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 079999999 99999999999999999754 4 99999986
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-16 Score=147.17 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|+....++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+... .....
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~------------~p~~G~I~i~G~~i~~~~~~~-~~~~r 69 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI------------EPTAGQIFIDGENIMKQSPVE-LREVR 69 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------CCCceEEEECCEECCcCCHHH-HHHHH
Confidence 34455678888887 89999999999999999999999965 999999999999887654321 00001
Q ss_pred eeeEEEEecCCCc-------------------------------------------------------------------
Q 023887 223 TRHVSLLPLSGGG------------------------------------------------------------------- 235 (276)
Q Consensus 223 t~~~~~~~~~~~~------------------------------------------------------------------- 235 (276)
++.+++++|....
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4567777765422
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+. + ++++|||++
T Consensus 150 iLLlDEP~s---aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 150 ILLMDEAFS---ALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred EEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999973
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-16 Score=135.74 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEcCcCCHH
Confidence 345666776667889999888 89999999999999999999999965 89999999998765332110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ....++++++..
T Consensus 78 ~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 78 I-----YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred H-----HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 0 001111111110
Q ss_pred ----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 ----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 ----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+++|+|.. ++|....+.+.+.+.++.+. + ++++||+++
T Consensus 153 ~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 153 QFMPKVLLLDEITS---ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred hcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 0179999999 99999999999999998753 4 899999863
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-16 Score=132.02 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=83.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-- 235 (276)
.|++++|+|+||+|||||+|+++|.. .|.+|+|+++|++.....+ ..+.+++++|+.+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~------------~P~~G~i~i~g~d~t~~~P-------~~RPVSmlFQEnNLFa 84 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE------------TPASGEILINGVDHTASPP-------AERPVSMLFQENNLFA 84 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc------------CCCCceEEEcCeecCcCCc-------ccCChhhhhhccccch
Confidence 79999999999999999999999965 9999999999998876543 44677888887654
Q ss_pred ------------------------------------------------------------------EEEecCCCCCCCCC
Q 023887 236 ------------------------------------------------------------------YLADTPGFNQPSLL 249 (276)
Q Consensus 236 ------------------------------------------------------------------~iiDtPg~~~~~l~ 249 (276)
+++|||.. .+|
T Consensus 85 HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs---ALd 161 (231)
T COG3840 85 HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS---ALD 161 (231)
T ss_pred hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh---hcC
Confidence 69999999 999
Q ss_pred hhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 250 KVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.-..++.++..+++.+ + ++++||..
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~ 190 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMVTHHP 190 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 99899999999999975 4 99999975
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=131.72 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=91.2
Q ss_pred ceeEEEecCC------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|+++
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~----------~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR----------TGLGVSGEVLINGRPL 75 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CCCCCceEEEECCEeC
Confidence 4556677754 46788888887 89999999999999999999999943 1389999999999876
Q ss_pred cccccccCCCCceeeeEEEEecCC---------------------------------------CcEEEecCCCCCCCCCh
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSG---------------------------------------GGYLADTPGFNQPSLLK 250 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~ 250 (276)
.... ..+.++++++.. ..+++|||.. ++|.
T Consensus 76 ~~~~--------~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~---~LD~ 144 (194)
T cd03213 76 DKRS--------FRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTS---GLDS 144 (194)
T ss_pred chHh--------hhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCH
Confidence 4310 112233333321 1179999999 9999
Q ss_pred hhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 251 VTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 251 ~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
...+.+.+.+.++.+.+ +|++||++
T Consensus 145 ~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 145 SSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999998765 89999986
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=135.34 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=89.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP----------SYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCcceEEECCEecCCCCHH
Confidence 356677777667899999988 89999999999999999999999963 13789999999886543211
Q ss_pred -----------cccCCCCcee------------e------------------------eEE--EEe------cC------
Q 023887 214 -----------TKSGRGKHTT------------R------------------------HVS--LLP------LS------ 232 (276)
Q Consensus 214 -----------~~~g~gk~tt------------~------------------------~~~--~~~------~~------ 232 (276)
..+..-.+.| . ... +.. ++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 0000000000 0 000 000 10
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 153 l~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDS---GLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 01179999999 999999999999999998765 99999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-16 Score=136.87 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=88.7
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 4 ~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 4 ENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI------------EPTSGEIFIDGEDIREQDPV 71 (242)
T ss_pred EEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCeEcCcCChH
Confidence 456677766 56788898888 89999999999999999999999965 89999999998765431110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ....++++++.+
T Consensus 72 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 72 E-----LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred H-----hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 0 001111111110
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 147 aral~~~p~llllDEPt~---~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 147 ARALAADPPLLLMDEPFG---ALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred HHHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 1179999999 99999999999999999764 5 89999986
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-16 Score=150.69 Aligned_cols=121 Identities=21% Similarity=0.288 Sum_probs=97.9
Q ss_pred cCceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+.+ .++++++.+ +|++++|+|+||||||||++.|.| .|+|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~------------~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG------------AWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh------------ccCCCCCeeeECCcChhh
Confidence 34567788887655 899999998 899999999999999999999999 459999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++++. ....+.+++|..+.
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 87643 23344444443321
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-ceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-GLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~ii~~~H~~ 275 (276)
+++|||+. ++|+++.+++.+.+.+-.+. .+|++||.+
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTe---gLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTE---GLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcc---cCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 79999999 99999999988877776653 399999986
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-16 Score=138.98 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=90.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc-
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS- 213 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs- 213 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 13 ~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ------------PPSEGEILLDAQPLESWSS 80 (265)
T ss_pred EEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEehhhCCH
Confidence 3556777787667899999988 89999999999999999999999955 899999999987653211
Q ss_pred -----------cccCCCCcee--eeEEE--E---e---cC----------------------------------------
Q 023887 214 -----------TKSGRGKHTT--RHVSL--L---P---LS---------------------------------------- 232 (276)
Q Consensus 214 -----------~~~g~gk~tt--~~~~~--~---~---~~---------------------------------------- 232 (276)
...+.-...+ ..+.+ . . ..
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 1000000000 00000 0 0 00
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 161 al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 161 LVAQDSRCLLLDEPTS---ALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00079999999 99999999999999999764 5 999999863
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=137.13 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=88.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 70 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV------------PYQHGSITLDGKPVEGPGA- 70 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCC-
Confidence 345667776666789999888 89999999999999999999999965 8999999999876532110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.++++++..
T Consensus 71 ---------~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 71 ---------ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred ---------cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence 011111110
Q ss_pred ------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 ------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 ------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 142 al~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 142 ALAANPQLLLLDEPFG---ALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred HHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 0079999999 9999999999999999854 34 89999986
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-16 Score=135.35 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=100.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+...|+....+.++++.+ +|++++++|+||||||||+++|+|.. +|.+|+|.++|+++...++
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~------------~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV------------RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeeEEECCeecCCCCH
Confidence 3466788888888999999998 89999999999999999999999977 8999999999999987654
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
+.- ....++++|+..+.
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 422 34455555553222
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++.+.-.+++.+.+.++++. + |+++.++.
T Consensus 149 RALm~~PklLLLDEPs~---GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 149 RALMSRPKLLLLDEPSE---GLAPKIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred HHHhcCCCEEEecCCcc---CcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 79999999 99999999999999999976 5 88888764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-16 Score=145.95 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=97.3
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 16 ~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 16 ELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE------------TPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 4566778887766788888888 89999999999999999999999966 8999999999998765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 84 -------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 84 -------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred -------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 12456666655321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 157 RaL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 157 RAVVNKPKVLLLDESLS---ALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred HHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999874 5 89999985
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-16 Score=140.80 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=94.3
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...
T Consensus 7 ~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~------------~p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 7 RVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL------------LPEAGTITVGGMVLSEE 74 (279)
T ss_pred EEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcC
Confidence 34567777753 35788888887 89999999999999999999999966 89999999999877543
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ..+.++++++... .
T Consensus 75 ~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv 149 (279)
T PRK13635 75 TVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV 149 (279)
T ss_pred cHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 2111 1223444444320 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|..+...+.+.+.++.+. + ++++||+++
T Consensus 150 ~laral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATS---MLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 99999999999999999875 5 899999863
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-16 Score=145.50 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=97.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+.+....+
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE------------RQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887766788888888 79999999999999999999999966 8999999999988764332
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 74 -------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 74 -------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred -------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence 23456777665322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...+..+.+.+.++.++ + +|++|||+
T Consensus 147 RaL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 147 RALATSPGLLLLDEPLS---ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999774 5 99999986
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=136.46 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=91.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE------------QPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccccc
Confidence 456677777667899999988 89999999999999999999999965 89999999998765421100
Q ss_pred c---CCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 216 S---GRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 216 ~---g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
. ...+.....++++++..
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 0 00000111222222211
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 154 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTS---ALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 0079999999 999999999999999998765 99999985
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=131.09 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=89.2
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++..
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~----------~~~~~~G~i~~~g~~~~~ 75 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK----------TAGVITGEILINGRPLDK 75 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCcceEEEECCEehHH
Confidence 4556667753 45788888887 89999999999999999999999964 125899999999977531
Q ss_pred cccccCCCCceeeeEEEEecCC---------------------------------------CcEEEecCCCCCCCCChhh
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------GGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~~~ 252 (276)
. ..+.++++++.. ..+++|||.. ++|...
T Consensus 76 ---~------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~---~LD~~~ 143 (192)
T cd03232 76 ---N------FQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTS---GLDSQA 143 (192)
T ss_pred ---H------hhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCc---CCCHHH
Confidence 0 111222322221 1279999999 999999
Q ss_pred HHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 253 KQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 253 ~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+.+.+.+.++.+.+ ++++||++
T Consensus 144 ~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 144 AYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 999999999998655 99999986
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-16 Score=142.41 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=94.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~------------~~~~G~i~i~g~~~~~~~~- 71 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL------------PPDSGSVQVCGEDVLQNPK- 71 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccChH-
Confidence 456778887777899999988 89999999999999999999999965 8999999999976643110
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 72 -----~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 72 -----EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred -----HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHH
Confidence 012334444443211
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++++.. ++++||+++
T Consensus 147 al~~~p~lliLDEPt~---gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~ 193 (301)
T TIGR03522 147 ALIHDPKVLILDEPTT---GLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ 193 (301)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 69999999 999999999999999997533 999999863
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-16 Score=139.76 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=91.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL------------KPTSGSVLIRGEPITKENI 73 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH
Confidence 456777774 345789999888 89999999999999999999999965 8999999999986543211
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
.. ....++++++.+
T Consensus 74 ~~-----~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~l 148 (277)
T PRK13652 74 RE-----VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAI 148 (277)
T ss_pred HH-----HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHH
Confidence 00 112222222211
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + ++++||+++
T Consensus 149 araL~~~p~llilDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTA---GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred HHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 0079999999 99999999999999999875 5 899999863
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-16 Score=145.41 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=98.2
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc--cceeeccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~--G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV------------KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCEEEEECCEECCC
Confidence 34567788887767889999888 89999999999999999999999965 8999 999999987754
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+. ..+.+++++|+...
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence 322 22456666665322
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~--ii~~~H~~ 275 (276)
+++|||.. ++|....+++.+.+.++.+. | +|++|||+
T Consensus 147 aLARAL~~~P~llLLDEP~s---~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLS---ALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHHHhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 89999986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.68 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=89.9
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE------------TPSAGELLAGTAPLAEAR 80 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEHHHhh
Confidence 34567778887777889999888 89999999999999999999999965 899999999886542210
Q ss_pred cccCCCCceeeeEEEEecCC------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSG------------------------------------------------------------ 233 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~------------------------------------------------------------ 233 (276)
..++++++..
T Consensus 81 ----------~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 81 ----------EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ----------CceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1111211110
Q ss_pred --CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 --GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 --~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 151 ~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 151 RPGLLLLDEPLG---ALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0179999999 9999999999999999865 34 89999986
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-16 Score=131.10 Aligned_cols=122 Identities=23% Similarity=0.213 Sum_probs=86.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc-ccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-VGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-~~~vs~~ 215 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|++++.. ++-+..-
T Consensus 4 ~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~~~~~i~~~~~l 71 (144)
T cd03221 4 ENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL------------EPDEGIVTWGSTVKIGYFEQL 71 (144)
T ss_pred EEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCeEEEEEEccC
Confidence 45666676656788888887 89999999999999999999999965 8999999998852 1111100
Q ss_pred cCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++-.+..-.-...+..++..+++|||.. ++|......+.+.+.++. ..++++||++
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~-~til~~th~~ 127 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTN---HLDLESIEALEEALKEYP-GTVILVSHDR 127 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHcC-CEEEEEECCH
Confidence 0000000000111112345699999999 999999999999988873 2399999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=127.08 Aligned_cols=118 Identities=22% Similarity=0.369 Sum_probs=91.8
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|.|.. +|.+|++++++.++.......
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~------------~~~~G~i~~~~~~~~~~~~~~ 70 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL------------KPTSGEILIDGKDIAKLPLEE 70 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccCCHHH
Confidence 34555665556788888777 89999999999999999999999965 899999999998765432111
Q ss_pred CCCCceeeeEEEEecC-----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 217 GRGKHTTRHVSLLPLS-----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~-----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
....++++++- +..+++|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 71 -----~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~---~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 71 -----LRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTS---GLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred -----HHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 22345554432 23389999999 999999999999999988754 99999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-16 Score=137.70 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL------------TPQSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCcEEEECCEEhHHCCHH
Confidence 456777887777899999888 89999999999999999999999965 899999999987643211
Q ss_pred ----------cccCCCCcee--eeEEE--------Ee------------------cC-----------------------
Q 023887 214 ----------TKSGRGKHTT--RHVSL--------LP------------------LS----------------------- 232 (276)
Q Consensus 214 ----------~~~g~gk~tt--~~~~~--------~~------------------~~----------------------- 232 (276)
.........| ..+.+ +. +.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred HHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 1100000000 00000 00 00
Q ss_pred ----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 153 l~~~p~llllDEP~~---~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 153 LAQDTPVVLLDEPTT---YLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 00079999999 999999999999999987665 89999986
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=133.48 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=89.6
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 4 ~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~~~~~--- 68 (223)
T TIGR03740 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL------------RPTSGEIIFDGHPWTRKD--- 68 (223)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccccc---
Confidence 45666776667788888887 89999999999999999999999965 899999999987543110
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
.+.++++++...
T Consensus 69 ------~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 69 ------LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred ------cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 012333332211
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|+|.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 p~llllDEP~~---~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 143 PKLLILDEPTN---GLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred CCEEEECCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 079999999 999999999999999998665 99999986
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=138.97 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=90.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI------------APDHGEILFDGENIPAMSRS 77 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccccChh
Confidence 455667776667788898888 89999999999999999999999965 89999999998765432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.. +...+.++++++..
T Consensus 78 ~~--~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RL--YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hH--HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 00 00011122222211
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 156 RAIALEPDLIMFDEPFV---GQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 0079999999 99999999999999999764 5 99999985
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-16 Score=139.93 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=90.4
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+..+|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...-
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI------------EPTSGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccChhhh
Confidence 4455566666788888887 89999999999999999999999965 8999999999987654321100
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
.+.....++++++....
T Consensus 97 -~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 97 -RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred -hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 00001223333332110
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 176 ~~~p~illLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 176 AVDPDILLMDEAFS---ALDPLIRREMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred hcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999754 4 99999986
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=144.25 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=93.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++......
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE------------HQTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 456677777667888999888 89999999999999999999999965 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.+.+++++|+..
T Consensus 73 -------~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 73 -------DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred -------HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 122333333210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|...++.+.+.+.++.+. + +|++|||++
T Consensus 146 alArAL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFG---ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 079999999 99999999999999999875 5 899999863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=135.36 Aligned_cols=62 Identities=29% Similarity=0.412 Sum_probs=53.0
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV------------EPSSGSILLEGTDIT 67 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCccEEEECCEEhh
Confidence 345667776 566889999888 89999999999999999999999965 899999999987654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-16 Score=140.03 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred ceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL------------EAESGQIIIDGDLLTEE 74 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECCcC
Confidence 4567777753 24788888887 89999999999999999999999965 89999999999877542
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ..+.++++++.+. .
T Consensus 75 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv 149 (279)
T PRK13650 75 NVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRV 149 (279)
T ss_pred cHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 2111 1223444444320 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++++. | +|++||++
T Consensus 150 ~lAral~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATS---MLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999999874 6 99999986
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=135.91 Aligned_cols=124 Identities=22% Similarity=0.255 Sum_probs=90.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccccccc
Confidence 456777777667899999988 89999999999999999999999965 89999999999765210000
Q ss_pred c-CCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 216 S-GRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 216 ~-g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
. ...+.....++++++...
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 0 000001112222222110
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 153 aral~~~p~llilDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTA---ALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHhcCCCEEEEcCCCC---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999998765 89999985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=154.97 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=106.8
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|... ..+++++..+ +|++++++|+||||||||+++|.| +|+|.+|+|.+||.+++.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g------------ly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG------------LYKPQQGRILLDGVDLND 539 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEeHHh
Confidence 4467788888765 5799999998 899999999999999999999999 669999999999999999
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|+.-.
T Consensus 540 i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 540 IDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred cCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 88655 88999999997522
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+++.+.+.+.++.... +|+++|.+
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTS---aLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATS---ALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCccc---ccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 69999999 999999999999999988655 99999975
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=137.24 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=91.1
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM------------TPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEEhhhCC
Confidence 34567788888777899999988 89999999999999999999999965 899999999987653211
Q ss_pred ------------cccCCCCcee--eeEEE--------E------------------ec----------------------
Q 023887 214 ------------TKSGRGKHTT--RHVSL--------L------------------PL---------------------- 231 (276)
Q Consensus 214 ------------~~~g~gk~tt--~~~~~--------~------------------~~---------------------- 231 (276)
.....-...+ ..+.+ + -+
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 0000000000 00000 0 00
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ral~~~p~llllDEPt~---gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 156 MVLAQETAIMLLDEPTT---WLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 99999999999999999764 5 99999986
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=136.98 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=92.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 7 NVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccccc
Confidence 3456777777667889999888 89999999999999999999999965 8999999999976542110
Q ss_pred ccC--------CCCceeeeEEEEecCCCc---------------------------------------------------
Q 023887 215 KSG--------RGKHTTRHVSLLPLSGGG--------------------------------------------------- 235 (276)
Q Consensus 215 ~~g--------~gk~tt~~~~~~~~~~~~--------------------------------------------------- 235 (276)
..+ ..+...+.++++++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 000 000011233333332110
Q ss_pred -------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.| ++++||++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTS---ALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 999999999999999998765 99999986
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=134.10 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=88.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ...++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-------~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLND-------LIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc-------cccCCCCCeEEEECCEEhhhcchH
Confidence 345677777667889999888 899999999999999999999999530 012278999999988764321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. +...+.++++++.
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 76 V---LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred H---HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHH
Confidence 0 0000000110000
Q ss_pred -------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 153 a~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 153 ARALANEPEVLLLDEPTS---ALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 01179999999 999999999999999997654 99999986
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=130.74 Aligned_cols=114 Identities=24% Similarity=0.263 Sum_probs=84.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~------------~~~~G~i~~~g~~~~~~~~~- 68 (211)
T cd03298 4 DKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE------------TPQSGRVLINGVDVTAAPPA- 68 (211)
T ss_pred EeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCcCCHh-
Confidence 45556665432 2677776 89999999999999999999999965 89999999998765322100
Q ss_pred CCCCceeeeEEEEecCC---------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSG--------------------------------------------------------------- 233 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~--------------------------------------------------------------- 233 (276)
.+.++++++..
T Consensus 69 ------~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 69 ------DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred ------HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 01122222110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 143 l~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 143 LVRDKPVLLLDEPFA---ALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 0079999999 99999999999999999753 5 89999986
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=135.23 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE------------PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccc
Confidence 345667777667888999888 89999999999999999999999965 89999999999876432100
Q ss_pred cC-------C-CCceeeeEEEEecCCC-----------------------------------------------------
Q 023887 216 SG-------R-GKHTTRHVSLLPLSGG----------------------------------------------------- 234 (276)
Q Consensus 216 ~g-------~-gk~tt~~~~~~~~~~~----------------------------------------------------- 234 (276)
.+ . .+...+.++++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 00 0 0001122333332210
Q ss_pred ----------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ----------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ----------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+. + +|++||++
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTS---ALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 079999999 99999999999999999864 5 99999986
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=137.17 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=90.8
Q ss_pred ceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~ 77 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE------------KVKSGEIFYNNQAITDDN 77 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCC
Confidence 45667777542 4788888887 89999999999999999999999965 899999999998764321
Q ss_pred cccCCCCceeeeEEEEecCCC-----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG----------------------------------------------------------- 234 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~----------------------------------------------------------- 234 (276)
... ..+.++++++.+.
T Consensus 78 ~~~-----~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 152 (269)
T PRK13648 78 FEK-----LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA 152 (269)
T ss_pred HHH-----HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH
Confidence 100 1122333332210
Q ss_pred ----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 ----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 153 laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 153 IAGVLALNPSVIILDEATS---MLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 079999999 99999999999999999764 5 899999863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=133.43 Aligned_cols=118 Identities=23% Similarity=0.339 Sum_probs=87.5
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY------------DPQKGQILIDGIDIRDISR 72 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEeHHHcCH
Confidence 4566777764 35789999887 89999999999999999999999966 8999999999866542110
Q ss_pred ccCCCCceeeeEEEEe--------------------------------------------------------c-------
Q 023887 215 KSGRGKHTTRHVSLLP--------------------------------------------------------L------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~--------------------------------------------------------~------- 231 (276)
.. ....+++++ +
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 73 KS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred HH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 00 000000000 0
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+ + ++++||++
T Consensus 148 v~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 198 (229)
T cd03254 148 LAIARAMLRDPKILILDEATS---NIDTETEKLIQEALEKLMK-GRTSIIIAHRL 198 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 011279999999 9999999999999999864 5 99999986
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-15 Score=132.76 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=91.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~------------~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE------------TPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCChh
Confidence 345667776667889999887 89999999999999999999999965 89999999999866542211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++++++....
T Consensus 71 -------~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (232)
T cd03300 71 -------KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIAR 143 (232)
T ss_pred -------hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1223333332100
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|+|.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 144 al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 144 ALVNEPKVLLLDEPLG---ALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999864 5 99999985
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=136.95 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=92.1
Q ss_pred CceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 9 ~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~ 76 (271)
T PRK13632 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL------------KPQSGEIKIDGITISKE 76 (271)
T ss_pred EEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEecCcC
Confidence 3456777774 346788888887 89999999999999999999999965 89999999999876432
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
+... ....++++++.+.
T Consensus 77 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (271)
T PRK13632 77 NLKE-----IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV 151 (271)
T ss_pred CHHH-----HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH
Confidence 2110 1223333333210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 152 ~laral~~~p~lllLDEP~~---gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTS---MLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 079999999 99999999999999999764 3 899999863
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-15 Score=151.27 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=100.8
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG------------YYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEhhhC
Confidence 445677777754 45789999988 899999999999999999999999 5699999999999988876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .+.++++++|++..
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 6443 55677777776422
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 484 RialARaLl~~~~illlDEpts---~LD~~t~~~i~~~l~~~~~~~tvIivtHr~ 535 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATA---NIDSGTEQAIQQALAAVREHTTLVVIAHRL 535 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998886544 99999976
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=149.37 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=93.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+.
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV------------PPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3466777887767899999988 89999999999999999999999965 8999999999976543221
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
..- ....++++++..
T Consensus 81 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 81 AKA----HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHH----HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 100 001223332221
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 157 ~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 200 (510)
T PRK15439 157 RDSRILILDEPTA---SLTPAETERLFSRIRELLAQGVGIVFISHKL 200 (510)
T ss_pred cCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 1179999999 999999999999999998766 99999986
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=138.65 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=92.0
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL------------KPTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCccEEEECCEECC
Confidence 4556667753 24788898887 89999999999999999999999965 899999999998765
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
..+... +.....+++++|.+.
T Consensus 73 ~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 73 DKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ 149 (287)
T ss_pred CcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence 421000 001233444443210
Q ss_pred ---------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ---------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ---------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|......+.+.+.++.+. | +|++||++
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTA---GLDPKGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999864 5 89999986
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-15 Score=132.16 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 72 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY------------KPTSGSVLLDGTDIRQLD 72 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCeEEECCEEhHHCC
Confidence 4556677754 34788888887 89999999999999999999999965 899999999886543211
Q ss_pred ------------cccCCCCcee-eeE-------------------EE-------------------Eec-----------
Q 023887 214 ------------TKSGRGKHTT-RHV-------------------SL-------------------LPL----------- 231 (276)
Q Consensus 214 ------------~~~g~gk~tt-~~~-------------------~~-------------------~~~----------- 231 (276)
..+..-..+- ..+ .+ ..+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 73 PADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred HHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 0000000000 000 00 000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
++..+|+|||.. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 153 ~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 200 (220)
T cd03245 153 RALLNDPPILLLDEPTS---AMDMNSEERLKERLRQLLGDKTLIIITHRPS 200 (220)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 011289999999 999999999999999987644 999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=138.35 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=92.7
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL------------QPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 45667777532 3788888888 89999999999999999999999965 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
..+.... .....+.++++++.+. .
T Consensus 72 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 72 STSKQKE-IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred ccccccc-HHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 2110000 0001233444444320 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++++.| ++++||+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~---gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTA---GLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 79999999 999999999999999998766 999999863
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=137.34 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=92.5
Q ss_pred ceeEEEecCC------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i 74 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL------------IPSEGKVYVDGLDT 74 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEec
Confidence 4567777753 35889999888 89999999999999999999999965 89999999999876
Q ss_pred cccccccCCCCceeeeEEEEecCCC-------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------- 234 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------- 234 (276)
...+.... ..+.++++++.+.
T Consensus 75 ~~~~~~~~----~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 75 SDEENLWD----IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQK 150 (280)
T ss_pred cccccHHH----HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 53211000 1223344333210
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|......+.+.+.++.++ + ++++||+++
T Consensus 151 qrv~laral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTA---MLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 079999999 99999999999999999764 5 899999864
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=133.28 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=86.3
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (234)
T cd03251 4 KNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDGHDVRDYTL 71 (234)
T ss_pred EEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCEEEECCEEhhhCCH
Confidence 4566667544 5788888887 89999999999999999999999965 8999999999876532110
Q ss_pred ccCCCCceeeeEEEEe--------------------------------------------------------c-------
Q 023887 215 KSGRGKHTTRHVSLLP--------------------------------------------------------L------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~--------------------------------------------------------~------- 231 (276)
.. ..+.+++++ +
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 72 AS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 00 000000000 0
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 147 v~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 197 (234)
T cd03251 147 IAIARALLKDPPILILDEATS---ALDTESERLVQAALERLMKNRTTFVIAHRL 197 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 011279999999 999999999999999987532 99999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-15 Score=135.13 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=89.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL------------SPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcccCCHH
Confidence 455677777767899999888 89999999999999999999999965 89999999988654321100
Q ss_pred cCCCCceeeeEEEEe-----------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLP----------------------------------------------------------------- 230 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~----------------------------------------------------------------- 230 (276)
. ....+++++
T Consensus 73 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 73 E-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred H-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 0 000011111
Q ss_pred ---------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeC
Q 023887 231 ---------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHML 275 (276)
Q Consensus 231 ---------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~ 275 (276)
..+..+++|||.. ++|....+.+.+.+.++. +.+ +|++||++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTS---ALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 1234478999999 999999999999999998 555 99999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=138.55 Aligned_cols=123 Identities=14% Similarity=0.236 Sum_probs=94.3
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL------------KPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4566777753 24889999888 89999999999999999999999965 899999999998765
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
..+.... .+...+.++++++.+. .
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 73 HKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred cccccch-HHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 3211000 0112345555555321 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|......+.+.+.++.+. | ++++||++
T Consensus 152 qrv~laraL~~~p~illlDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTA---GLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 79999999 99999999999999999764 5 99999986
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-15 Score=150.25 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=98.2
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF------------YDIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCceEEECCEEhhh
Confidence 445677788864 45799999988 8999999999999999999999994 59999999999998877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .+..+++++|++..
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 65332 34556666665311
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 485 qrQRi~LARall~~~~ililDEpts---aLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATS---ALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998886544 99999986
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=145.85 Aligned_cols=121 Identities=22% Similarity=0.347 Sum_probs=104.8
Q ss_pred cCceeEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|+.+.++|+.+. .++++++.+ +|+++||+|+||+||||+||+|.+ ||+ .+|+|.++|+++.++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr------------F~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR------------FFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------Hhc-cCCcEEECCeeHhhh
Confidence 34677888998877 999999998 899999999999999999999998 668 999999999999999
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... +++.++++||+..+
T Consensus 419 ~~~S-----lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred ChHH-----hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 8654 88999999998533
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. .+|..+..++.+.+.+....- +|++.|+++
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS---~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATS---ALDSETEREILDMIMDVMSGRTVIMIVHRLD 547 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCccc---ccchhhHHHHHHHHHHhcCCCeEEEEEecch
Confidence 69999999 999999999999888833222 999999873
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=133.54 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=88.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT------------RPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCeecCCCCHH
Confidence 345667776666788999888 89999999999999999999999965 89999999999765432110
Q ss_pred -------------cCCCCceee--eEEE------------------------------EecC------------------
Q 023887 216 -------------SGRGKHTTR--HVSL------------------------------LPLS------------------ 232 (276)
Q Consensus 216 -------------~g~gk~tt~--~~~~------------------------------~~~~------------------ 232 (276)
+..-.+.|- .+.+ +.+.
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 000000000 0000 0000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 153 ~laral~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 202 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVA---GMTDEETEKTAELLKSLAGKHSVVVVEHDM 202 (242)
T ss_pred HHHHHHhcCCCEEEecCCcc---CCCHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 00079999999 999999999999999997633 99999986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-15 Score=139.97 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=95.0
Q ss_pred CceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++
T Consensus 23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~------------~p~~G~I~i~g~~~ 90 (320)
T PRK13631 23 RVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI------------KSKYGTIQVGDIYI 90 (320)
T ss_pred EEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCEEc
Confidence 356677777542 4788888888 89999999999999999999999955 99999999999876
Q ss_pred cccc----------ccc-CCCCceeeeEEEEecCCC--c-----------------------------------------
Q 023887 210 GEVS----------TKS-GRGKHTTRHVSLLPLSGG--G----------------------------------------- 235 (276)
Q Consensus 210 ~~vs----------~~~-g~gk~tt~~~~~~~~~~~--~----------------------------------------- 235 (276)
+... ... ...+...+.++++++.+. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 5320 000 000112344555555421 1
Q ss_pred ---------------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|+|.. ++|..+...+.+.+.++.+.+ +|++||+++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPts---gLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA---GLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 79999999 999999999999999997766 999999863
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-15 Score=148.60 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=99.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+. ..++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG------------FVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEehhh
Confidence 4567788888653 5799999988 899999999999999999999999 559999999999998887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 389 ~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 463 (529)
T TIGR02857 389 ADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQ 463 (529)
T ss_pred CCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHH
Confidence 65432 45567777776422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 464 ~qri~laRal~~~~~ililDE~ts---~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 464 AQRLALARAFLRDAPLLLLDEPTA---HLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccc---ccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 79999999 999999999999998886433 99999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-15 Score=130.92 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=88.7
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 71 (221)
T cd03244 4 EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV------------ELSSGSILIDGVDISKI 71 (221)
T ss_pred EEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhHhC
Confidence 34567777753 35889999988 89999999999999999999999965 89999999998765431
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
.... ..+.++++++.
T Consensus 72 ~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 72 GLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred CHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1100 00011111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 147 r~~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATA---SVDPETDALIQKTIREAFKDCTVLTIAHRL 198 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 11279999999 999999999999999986533 99999986
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-15 Score=137.65 Aligned_cols=124 Identities=21% Similarity=0.274 Sum_probs=91.3
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL------------KPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4566777753 24788888887 89999999999999999999999966 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
....... .+.....++++++.+.
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 73 PETGNKN-LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred cccccch-HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 2100000 0001122333333210
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+.| ++++||+++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~---gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~ 206 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAA---GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 079999999 999999999999999997666 899999863
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=149.69 Aligned_cols=121 Identities=24% Similarity=0.366 Sum_probs=100.6
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR------------VFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEhhhC
Confidence 445677888864 45799999988 899999999999999999999999 5699999999999988876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 6433 55677888776532
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 478 QRialARall~~~~iliLDEpts---~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATS---ALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 69999999 999999999999888875533 99999985
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-15 Score=150.26 Aligned_cols=120 Identities=30% Similarity=0.318 Sum_probs=99.8
Q ss_pred cCceeEEE-ecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFC-SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~-s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.+ ++.+...++++++.+ +|++++|+|+||+|||||+++|+| +| |++|+|.++|.++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g------------~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG------------FL-PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CC-CCCcEEEECCEecccC
Confidence 44555644 344556799999988 899999999999999999999999 77 8999999999999887
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++++++++|++..
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 6543 66788888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+.+.+.+.+.++.+.- +|++||.+
T Consensus 492 QRialARAll~~~~IliLDE~TS---aLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTA---SLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 79999999 999999999999998886533 99999975
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=132.40 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY------------VPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCeehHhcC
Confidence 3456666653 34788888887 89999999999999999999999965 899999999987643211
Q ss_pred c------------ccC-----------CC-Cceee-e-------EE-------------------EEec-----------
Q 023887 214 T------------KSG-----------RG-KHTTR-H-------VS-------------------LLPL----------- 231 (276)
Q Consensus 214 ~------------~~g-----------~g-k~tt~-~-------~~-------------------~~~~----------- 231 (276)
. ... .. +..+. . .. ...+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~la 150 (237)
T cd03252 71 PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150 (237)
T ss_pred HHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHH
Confidence 0 000 00 00000 0 00 0000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.+ + ++++||++
T Consensus 151 ral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 197 (237)
T cd03252 151 RALIHNPRILIFDEATS---ALDYESEHAIMRNMHDICA-GRTVIIIAHRL 197 (237)
T ss_pred HHHhhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 011179999999 9999999999999999875 5 89999986
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=142.40 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=96.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..+....+
T Consensus 21 ~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 21 EIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE------------QPTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777776666788888888 89999999999999999999999966 8999999999987754321
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 89 -------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 89 -------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred -------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 23567777776422
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 162 RAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMG---ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999888888653 5 99999986
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-15 Score=132.23 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=92.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE------------QPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 345667777667888888887 89999999999999999999999955 8999999999987643211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++.+..
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 12234444433211
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|+|.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 144 al~~~p~llllDEP~~---~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFG---ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 4 99999985
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=132.51 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=86.1
Q ss_pred eeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 138 EPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 138 ~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.+.+.|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 71 (238)
T cd03249 4 KNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY------------DPTSGEILLDGVDIRDLN 71 (238)
T ss_pred EEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC------------CCCCCEEEECCEehhhcC
Confidence 455666643 24688888887 89999999999999999999999965 899999999986653211
Q ss_pred ccc-------------------------CCCCceeee-------EEE-------------------Eec-----------
Q 023887 214 TKS-------------------------GRGKHTTRH-------VSL-------------------LPL----------- 231 (276)
Q Consensus 214 ~~~-------------------------g~gk~tt~~-------~~~-------------------~~~----------- 231 (276)
... +........ ..+ ..+
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 72 LRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred HHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 000 000000000 000 000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+++|||.. ++|....+.+.+.+.++. ++ ++++||+++
T Consensus 152 ~al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~ 199 (238)
T cd03249 152 RALLRNPKILLLDEATS---ALDAESEKLVQEALDRAM-KGRTTIVIAHRLS 199 (238)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH
Confidence 012279999999 999999999999999987 55 899999863
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=137.49 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=93.1
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL------------QPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4567777753 34788898888 89999999999999999999999966 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
....... .+...+.++++++.+. .
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 73 AGKKNKK-LKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQM 151 (290)
T ss_pred cccccch-HHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHH
Confidence 2100000 0001233444444320 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+. | +|++||+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~---~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTA---GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999863
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=136.13 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=92.6
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF------------EEFEGKVKIDGELLTAE 74 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEECCcC
Confidence 45667777532 3688888887 89999999999999999999999965 89999999999876532
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ....++++++.+. .
T Consensus 75 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (277)
T PRK13642 75 NVWN-----LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV 149 (277)
T ss_pred CHHH-----HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 2110 1233444444321 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+. | ++++||+++
T Consensus 150 ~lAraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTS---MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999863
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=146.94 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=90.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY------------TRDAGSILYLGKEVTFNGPK 74 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 456777787667899999988 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
.. ..+.++++++.
T Consensus 75 ~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 75 SS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred HH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 00 00001110000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 151 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTD---ALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 01179999999 999999999999999997765 999999863
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=152.49 Aligned_cols=122 Identities=17% Similarity=0.293 Sum_probs=100.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG------------LYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhhh
Confidence 456778888863 35799999998 899999999999999999999999 569999999999998887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 532 ~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 532 IDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred CCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 65433 45566666665321
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 607 rQRlalARall~~p~iliLDE~Ts---~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTS---AMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 999999999999999887544 999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-15 Score=128.79 Aligned_cols=120 Identities=21% Similarity=0.211 Sum_probs=89.7
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...
T Consensus 8 ~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 8 EVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL------------EAEEGKIEIDGIDISTI 75 (207)
T ss_pred EEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEhHHC
Confidence 45667777764 35788888887 89999999999999999999999955 89999999999776432
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------CcEEEe
Q 023887 213 STKSGRGKHTTRHVSLLPLSG-----------------------------------------------------GGYLAD 239 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~-----------------------------------------------------~~~iiD 239 (276)
.... ....++++++.+ ..+|+|
T Consensus 76 ~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllD 150 (207)
T cd03369 76 PLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150 (207)
T ss_pred CHHH-----HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 2110 111222222211 117999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 151 EP~~---~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 151 EATA---SIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred CCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 9999 999999999999999986422 89999986
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=152.12 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=100.0
Q ss_pred cCceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|. +...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG------------FETPESGSVFYDGQDLAG 519 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcCc
Confidence 45677888884 346899999998 899999999999999999999999 569999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++..
T Consensus 520 ~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 520 LDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred CCHHH-----HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 76443 56677787776422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++. .-+|++||.+
T Consensus 595 QRialARAll~~p~iLiLDEpTS---~LD~~te~~i~~~L~~~~-~T~IiItHr~ 645 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATS---ALDNRTQAIVSESLERLK-VTRIVIAHRL 645 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHhC-CeEEEEecCh
Confidence 69999999 999999999988888762 2399999975
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-15 Score=132.02 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|.++|.++...+.
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-------~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL-------YPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-------CCCCCCceEEEECCEECCcCCHH
Confidence 456677777667889999988 8999999999999999999999996510 0001579999998876532110
Q ss_pred -----------ccCCCCcee-----------------------------eeEEE-------E-----ec-----------
Q 023887 215 -----------KSGRGKHTT-----------------------------RHVSL-------L-----PL----------- 231 (276)
Q Consensus 215 -----------~~g~gk~tt-----------------------------~~~~~-------~-----~~----------- 231 (276)
.+..-...| ....+ . .+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 000000000 00000 0 00
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 159 ral~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 159 RALAFQPEVLLADEPTA---NLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 011179999999 999999999999999986522 99999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-15 Score=137.59 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=93.4
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.+..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~~~ 72 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL------------LPDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEEeceecc
Confidence 45667777542 4788899888 89999999999999999999999965 899999999876542
Q ss_pred cccc-------------c-----cC-CCCceeeeEEEEecCCC--c----------------------------------
Q 023887 211 EVST-------------K-----SG-RGKHTTRHVSLLPLSGG--G---------------------------------- 235 (276)
Q Consensus 211 ~vs~-------------~-----~g-~gk~tt~~~~~~~~~~~--~---------------------------------- 235 (276)
..+. . .. ..+...+.+++++|++. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 1100 0 00 00112345666666421 0
Q ss_pred ----------------------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------------------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------------------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++++.| +|++||++
T Consensus 153 gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 153 GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTA---GLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 79999999 999999999999999998766 89999986
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-15 Score=134.47 Aligned_cols=126 Identities=19% Similarity=0.130 Sum_probs=89.9
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE- 211 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~- 211 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV------------RLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEhHHh
Confidence 34567778884 456789999888 89999999999999999999999965 8999999999865421
Q ss_pred --------cccccCC-C-Ccee-e-eEEE--E------ecC---------------------------------------
Q 023887 212 --------VSTKSGR-G-KHTT-R-HVSL--L------PLS--------------------------------------- 232 (276)
Q Consensus 212 --------vs~~~g~-g-k~tt-~-~~~~--~------~~~--------------------------------------- 232 (276)
+...+.. . ...+ . .+.+ + ...
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~la 154 (272)
T PRK15056 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA 154 (272)
T ss_pred hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 1111100 0 0000 0 0000 0 000
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 155 raL~~~p~llllDEPt~---~LD~~~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 155 RAIAQQGQVILLDEPFT---GVDVKTEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00079999999 999999999999999998766 99999986
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=135.50 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=90.1
Q ss_pred CceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++
T Consensus 8 ~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 75 (289)
T PRK13645 8 ILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI------------ISETGQTIVGDYAI 75 (289)
T ss_pred EEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEc
Confidence 356677777653 3788998888 89999999999999999999999965 89999999998765
Q ss_pred cccccccCCCCceeeeEEEEecCCC-------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------- 234 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------- 234 (276)
................++++++...
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq 155 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQ 155 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHH
Confidence 3100000000001122333332210
Q ss_pred ---------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ---------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ---------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTG---GLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 079999999 99999999999999998763 5 99999986
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.2e-15 Score=128.61 Aligned_cols=114 Identities=26% Similarity=0.318 Sum_probs=84.8
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.. .+.++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 4 ~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~-- 67 (213)
T TIGR01277 4 DKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI------------EPASGSIKVNDQSHTGLAP-- 67 (213)
T ss_pred EeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccCCh--
Confidence 445555542 345666666 89999999999999999999999965 8999999999986543110
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 68 -----~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 68 -----YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred -----hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112222222210
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|+|.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 143 l~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 143 LVRPNPILLLDEPFS---ALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999764 4 89999985
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-15 Score=135.93 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=93.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~------------~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL------------KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCccEEEECCEECCCCcc
Confidence 456777775 456889999888 89999999999999999999999965 8999999999987631100
Q ss_pred ccCCCCceeeeEEEEecCCC--c---------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG--G--------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~--~--------------------------------------------------------- 235 (276)
. .+.....++++++.+. .
T Consensus 76 ~---~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 76 G---LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred h---HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHH
Confidence 0 0012234455544321 0
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|......+.+.+.++.+. | ++++||++
T Consensus 153 araL~~~p~lLilDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTA---GLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 79999999 99999999999999999864 5 99999986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-15 Score=131.46 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=86.9
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY------------DVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEhhhCCH
Confidence 345666674 345788888887 89999999999999999999999965 8999999999876532110
Q ss_pred ------------cc-------------CCCCceeee-------EEE------E-------------ecC-----------
Q 023887 215 ------------KS-------------GRGKHTTRH-------VSL------L-------------PLS----------- 232 (276)
Q Consensus 215 ------------~~-------------g~gk~tt~~-------~~~------~-------------~~~----------- 232 (276)
.. +........ ..+ + .++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 71 DSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred HHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 00 000000000 000 0 010
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+ + +|++||++
T Consensus 151 aL~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 151 AILKNPPILLLDEATS---ALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred HHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 11289999999 9999999999999999877 6 89999986
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-15 Score=129.62 Aligned_cols=124 Identities=25% Similarity=0.327 Sum_probs=93.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++......++++++.+ +|+..+|+||||+|||||+++|+|.. .|++|++.++|.+....+...
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel------------~p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL------------SPDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc------------CCCCCeEeeCCcChhhCCHHH
Confidence 45677777888899999987 89999999999999999999999987 899999999998876633221
Q ss_pred --------------------------CCCCcee-----ee------------------EEEEecCC--------------
Q 023887 217 --------------------------GRGKHTT-----RH------------------VSLLPLSG-------------- 233 (276)
Q Consensus 217 --------------------------g~gk~tt-----~~------------------~~~~~~~~-------------- 233 (276)
|+-+|.+ .+ ..|-.+++
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 0000100 00 00000000
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+.+++|||.. .+|...+....++.++|...| ++.+-||+|
T Consensus 153 l~~~v~~~r~L~LDEPts---aLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN 202 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTS---ALDIAHQHHTLRLARQLAREGGAVLAVLHDLN 202 (259)
T ss_pred ccCCCCCCceEEecCCcc---ccchHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence 0169999999 999888999999999999886 999999987
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=133.91 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=87.7
Q ss_pred ceeEEEecCC---------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~---------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 74 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGELLIDD 74 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCCEEEECC
Confidence 3456666642 24788888888 89999999999999999999999965 89999999998
Q ss_pred ccccccccccCCCCceeeeEEEEecCC-----------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSG----------------------------------------------------- 233 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~----------------------------------------------------- 233 (276)
.++....... ....++++++..
T Consensus 75 ~~~~~~~~~~-----~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 75 HPLHFGDYSY-----RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred EECCCCchhh-----HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchh
Confidence 7654211000 001112211110
Q ss_pred -------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALA---SLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 0079999999 99999999999999999764 5 89999986
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-15 Score=135.12 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=88.5
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH------------VPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcc
Confidence 3556677753 24788888887 89999999999999999999999965 899999999987654
Q ss_pred ccccccCCCCceeeeEEEEecCC---------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------------- 233 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------------- 233 (276)
..+.... .+...+.++++++..
T Consensus 73 ~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 73 STSKNKD-IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQM 151 (280)
T ss_pred ccccccC-HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 3210000 000011122222110
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTA---GLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 0179999999 999999999999999997655 99999986
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-15 Score=130.31 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=89.4
Q ss_pred eeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.+.|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 5 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 5 RNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR------------SVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEhHhc
Confidence 445566653 44788888887 89999999999999999999999955 89999999999876532
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
+.... ......++++++...
T Consensus 73 ~~~~~--~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 73 SEKEL--VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred CHhHH--HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 21000 001112222222110
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++.+. + +|++||+++
T Consensus 151 ~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTA---ALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 079999999 99999999999999999863 4 999999863
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-15 Score=134.98 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=92.1
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL------------KPTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEECccccc
Confidence 456677775 345788888888 89999999999999999999999965 8999999999987631110
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
. .+.....+++++++..
T Consensus 72 -~--~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 72 -S--LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred -h--HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHH
Confidence 0 0001233444444310
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++.+.+ ++++||+++
T Consensus 149 aral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTS---GLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred HHHHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 079999999 999999999999999998655 999999863
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-15 Score=145.10 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=87.8
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc----
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS---- 213 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs---- 213 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY------------QKDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCEECCCCCHHHH
Confidence 4566776667889999888 89999999999999999999999965 899999999997653211
Q ss_pred ---------cccCCCCcee--eeEEE--E-----------------------ecC-------------------------
Q 023887 214 ---------TKSGRGKHTT--RHVSL--L-----------------------PLS------------------------- 232 (276)
Q Consensus 214 ---------~~~g~gk~tt--~~~~~--~-----------------------~~~------------------------- 232 (276)
.....-...| ..+.+ . .+.
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 0000000000 00000 0 000
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 151 ~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 151 YNAKIVIMDEPTS---SLTEKEVNHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 00179999999 999999999999999998766 99999986
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-15 Score=151.80 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=98.5
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.++
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG------------FFQARSGEILLNGFSLKDI 541 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCcEEEECCEEHHHc
Confidence 44677888886 346799999988 899999999999999999999999 5699999999999998876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 542 ~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 542 DRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred CHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 6433 45566777665311
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++...-+|++||++
T Consensus 617 rQRialARall~~p~iliLDE~Ts---~LD~~te~~i~~~L~~~~~~T~IiitHr~ 669 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTS---NLDTITEKKIVNNLLNLQDKTIIFVAHRL 669 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 79999999 99999999998888876322289999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=133.70 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=88.5
Q ss_pred ceeEEEecC---------CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 72 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE------------KPAQGTVSFRG 72 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345566664 245788999888 89999999999999999999999965 89999999999
Q ss_pred ccccccccccCCCCceeeeEEEEecCC-----------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSG----------------------------------------------------- 233 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~----------------------------------------------------- 233 (276)
.++...+.... ....+.++++++..
T Consensus 73 ~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 73 QDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred EEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 76543211000 00001112111110
Q ss_pred -------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVS---NLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 0079999999 99999999999999999864 5 99999986
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-15 Score=128.20 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=86.8
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+.++|++... ++++.+ + ++++|+|+||+|||||+++|+|.. +|++|+|.++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE------------KPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEecccccchhh
Confidence 35667766543 788877 7 999999999999999999999965 8999999999976542111000
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
. +...+.++++++....
T Consensus 70 ~-~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 70 L-PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred h-hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 0 0012234444433211
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 149 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 149 QPELLLLDEPFS---ALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred CCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 79999999 99999999999999999764 5 89999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=122.56 Aligned_cols=122 Identities=20% Similarity=0.124 Sum_probs=85.3
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-+..
T Consensus 4 ~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~i~~~~q 71 (166)
T cd03223 4 ENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW------------PWGSGRIGMPEGEDLLFLPQ 71 (166)
T ss_pred EEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCCceEEEECC
Confidence 456666643 45788888887 89999999999999999999999965 899999998873 2333332
Q ss_pred ccCCCCcee-eeEEE---Eec----------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeee
Q 023887 215 KSGRGKHTT-RHVSL---LPL----------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHM 274 (276)
Q Consensus 215 ~~g~gk~tt-~~~~~---~~~----------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~ 274 (276)
....-..+. .++.+ ..+ .+..+++|||.. ++|....+.+.+.+.++. ..+|++||+
T Consensus 72 ~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~-~tiiivsh~ 147 (166)
T cd03223 72 RPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATS---ALDEESEDRLYQLLKELG-ITVISVGHR 147 (166)
T ss_pred CCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcc---ccCHHHHHHHHHHHHHhC-CEEEEEeCC
Confidence 211100000 11110 001 123389999999 999999999999888872 239999998
Q ss_pred C
Q 023887 275 L 275 (276)
Q Consensus 275 ~ 275 (276)
+
T Consensus 148 ~ 148 (166)
T cd03223 148 P 148 (166)
T ss_pred h
Confidence 6
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-15 Score=151.40 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=98.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG------------LYQPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEeHHH
Confidence 446778888864 46799999998 899999999999999999999999 569999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 66433 56677777776422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+. ..-+|++||.+
T Consensus 621 rQRiaLARall~~p~iliLDEptS---~LD~~te~~i~~~l~~~-~~T~IiitHrl 672 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATS---ALDPETEKIIDDNLRRR-GCTCIIVAHRL 672 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccc---cCCHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 79999999 99999989888888762 12299999975
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.8e-15 Score=132.50 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=52.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.+
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~ 69 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL------------APDAGEVHYRMRD 69 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCcc
Confidence 456677776666788888887 89999999999999999999999965 8999999999986
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-15 Score=126.29 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=83.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc---
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS--- 213 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs--- 213 (276)
+.+.++|.....++ +++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 5 ~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 5 HQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM------------QPSSGNIYYKNCNINNIAKPY 71 (195)
T ss_pred EEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCcccChhhhhh
Confidence 45566665544444 77776 89999999999999999999999965 899999999997653321
Q ss_pred -----cccCCCCcee--eeEE-----------------EEec---------------------------CCCcEEEecCC
Q 023887 214 -----TKSGRGKHTT--RHVS-----------------LLPL---------------------------SGGGYLADTPG 242 (276)
Q Consensus 214 -----~~~g~gk~tt--~~~~-----------------~~~~---------------------------~~~~~iiDtPg 242 (276)
...+.-.+.| ..+. .+.+ .+..+++|||.
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0000000000 0000 0000 00117999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
. ++|....+.+.+.+.+..+.+ ++++||+++
T Consensus 152 ~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 152 T---NLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred c---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 9 999999999999998766655 999999864
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-15 Score=129.43 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=87.8
Q ss_pred CceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 13 ~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 13 KFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDGKPISQ 80 (226)
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECCCchHH
Confidence 34667777754 24788888887 89999999999999999999999965 8999999999876532
Q ss_pred ccc------------cc-------------CCCCcee----e------------eE--EEEec-C---------------
Q 023887 212 VST------------KS-------------GRGKHTT----R------------HV--SLLPL-S--------------- 232 (276)
Q Consensus 212 vs~------------~~-------------g~gk~tt----~------------~~--~~~~~-~--------------- 232 (276)
... .. +...... . .. ++-.. .
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred cCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 110 00 0000000 0 00 00000 0
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 161 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 161 IARALIRNPQVLILDEATS---ALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred HHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 01179999999 999999999999999987633 99999986
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-15 Score=130.86 Aligned_cols=121 Identities=21% Similarity=0.303 Sum_probs=88.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++.
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN------------DLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceEEEECCEEcc
Confidence 456777777667889999888 89999999999999999999999965 777 999999987654
Q ss_pred ccccccCCCCceeeeEEEEec-----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPL----------------------------------------------------------- 231 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~----------------------------------------------------------- 231 (276)
..+... ......++++++
T Consensus 72 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 72 DKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred ccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 210000 000000000000
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTS---ALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 001179999999 999999999999999987644 99999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-15 Score=147.44 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=104.0
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. ++..++++++.+ +|++++++|+||+|||||+|+|.+ +|+|++|+|.+||.++.++
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r------------~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR------------LYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCEehhhc
Confidence 45678889998 578999999998 899999999999999999999999 6799999999999999988
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|+...
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 7554 66777888876422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+...+.+.+.++.+.- +++++|.+
T Consensus 472 QrlaiARall~~~~ILILDEaTS---alD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATS---ALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred HHHHHHHHHhcCCCEEEEecccc---ccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 69999999 999999999999998777432 78899976
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-15 Score=138.92 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=94.9
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.... -..|++|+|.++|+++..
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~--------~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY--------PGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--------CCCCcceEEEECCEECCc
Confidence 4456666654 24789999988 8999999999999999999999996510 002589999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCC--c------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--G------------------------------------------------------ 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--~------------------------------------------------------ 235 (276)
.+.+. +.+...+.+++++|++. .
T Consensus 78 ~~~~~-~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 78 ISEKE-RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred CCHHH-HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 43221 01111234566665431 0
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|.....++.+.+.++.+. + +|++|||++
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts---~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTT---ALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999863 5 999999973
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-15 Score=130.26 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=88.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+.
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE----------DYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc----------cCCCCceEEEECCCccccCCHH
Confidence 456667776666788998887 89999999999999999999999963 136899999999865432110
Q ss_pred ------------ccCC-------------CCceee--e---EE----------------E--------E--ecC------
Q 023887 215 ------------KSGR-------------GKHTTR--H---VS----------------L--------L--PLS------ 232 (276)
Q Consensus 215 ------------~~g~-------------gk~tt~--~---~~----------------~--------~--~~~------ 232 (276)
.... .+.... . .. + . .++
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 0000 000000 0 00 0 0 011
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 154 v~laral~~~p~illLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDS---GLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 11289999999 999999999999999998765 89999985
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=128.72 Aligned_cols=115 Identities=26% Similarity=0.291 Sum_probs=84.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL------------TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCeecCcCChh
Confidence 355666775422 3667766 89999999999999999999999965 89999999998765432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.+.++++++..
T Consensus 70 -------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 70 -------RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142 (232)
T ss_pred -------hccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHH
Confidence 00111111110
Q ss_pred ------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 143 al~~~p~lllLDEP~~---gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 143 CLVREQPILLLDEPFS---ALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 0079999999 99999999999999998763 5 99999986
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=129.67 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=89.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP----------AYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC----------cCcCCCceEEECCEEcccCChh
Confidence 456667776666889999887 89999999999999999999999963 2478999999988665332110
Q ss_pred c----CC---------CCcee----------------------------------eeEEE--------E-e-cCC-----
Q 023887 216 S----GR---------GKHTT----------------------------------RHVSL--------L-P-LSG----- 233 (276)
Q Consensus 216 ~----g~---------gk~tt----------------------------------~~~~~--------~-~-~~~----- 233 (276)
. +. -+.++ ....+ + . ++.
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 0 00 00000 00000 0 0 110
Q ss_pred -----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|..+.+.+.+.+.++.+.+ +|++||++
T Consensus 160 v~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 160 NEILQMALLDSELAILDETDS---GLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 1189999999 999999999999999998655 89999985
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-15 Score=145.40 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=90.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH------------EPTKGTITINNINYNKLDHK 75 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc------------CCCccEEEECCEECCCCCHH
Confidence 456777787667899999988 89999999999999999999999965 8999999999876533211
Q ss_pred ------------ccCCCCcee--eeEEE--E------e---------------------c--------------------
Q 023887 215 ------------KSGRGKHTT--RHVSL--L------P---------------------L-------------------- 231 (276)
Q Consensus 215 ------------~~g~gk~tt--~~~~~--~------~---------------------~-------------------- 231 (276)
....-...| ..+.+ . . +
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 000000000 00000 0 0 0
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+|+|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 156 ia~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTS---SLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred HHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 000179999999 999999999999999998766 99999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-15 Score=145.12 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +| ++|+|+++|.++...+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY------------PHGTYEGEIIFEGEELQASN 75 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 456777887667899999998 89999999999999999999999965 54 8999999987653211
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
...- ....+++++|.
T Consensus 76 ~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 76 IRDT----ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred HHHH----HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 0000 00001111000
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 152 v~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTA---SLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 00179999999 999999999999999997765 99999986
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-15 Score=145.00 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=89.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY------------QPDAGSILIDGQEMRFASTT 74 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 456677777667889999888 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
.. ....+++++|.
T Consensus 75 ~~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 75 AA----LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred HH----HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHH
Confidence 00 00011111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 151 laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 151 IAKALARNARVIAFDEPTS---SLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred HHHHHHhCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00179999999 999999999999999998766 99999986
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-15 Score=146.89 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=95.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR------------FYEPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEeHHh
Confidence 445677888854 45789999988 899999999999999999999999 459999999999988776
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .+..+++++|++..
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 54322 33344444443211
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||+.
T Consensus 474 qrQRiaLARall~~~~illLDEpts---~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATS---ALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 79999999 999999999999999886544 99999985
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-15 Score=131.01 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++ |++|+|+++|+++...+
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---------LIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---------cCCCCCCceEEEECCEEccccc
Confidence 455667776666889999888 899999999999999999999999641 012 68999999887653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
.... .....++++++.
T Consensus 80 ~~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVV---ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHH---HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 0000 000001111000
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 157 rv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tvii~tH~~ 208 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPAS---ALDPIATQKIEELIHELKARYTIIIVTHNM 208 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCeEEEEEecH
Confidence 01179999999 999999999999999996532 99999986
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-15 Score=144.32 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL------------PLLSGERQSQFSHITRLSFE 73 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCceEEECCcccccCCHH
Confidence 456778887667899999988 89999999999999999999999966 89999999887654321100
Q ss_pred -----cCCCC---------------ceeeeEEEEe-----------------c---------------------------
Q 023887 216 -----SGRGK---------------HTTRHVSLLP-----------------L--------------------------- 231 (276)
Q Consensus 216 -----~g~gk---------------~tt~~~~~~~-----------------~--------------------------- 231 (276)
.+.-. ..+. ...+. +
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTT-AEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccH-HHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 00000 0000 00000 0
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+++|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 153 ~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 153 EPDLLILDEPFD---GLDVASRQQLAELLASLHQSGITLVLVLNRF 195 (490)
T ss_pred CCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 000179999999 999999999999999998766 89999986
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=130.78 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=52.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL------------ELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CcccCCCCceEEEECCEEcc
Confidence 456777777667899999988 89999999999999999999999965 54 5899999887653
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-15 Score=129.95 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=83.3
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.+...... . .
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~~~~--~----~ 92 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL------------QPTSGEVRVAGLVPWKRRK--K----F 92 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEccccch--h----h
Confidence 34455688888887 89999999999999999999999965 8999999998875422110 0 1
Q ss_pred eeeEEEEe-cCC--------------------------------------------------------------------
Q 023887 223 TRHVSLLP-LSG-------------------------------------------------------------------- 233 (276)
Q Consensus 223 t~~~~~~~-~~~-------------------------------------------------------------------- 233 (276)
...+++++ +..
T Consensus 93 ~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 172 (236)
T cd03267 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP 172 (236)
T ss_pred cccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11222221 100
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 173 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 173 EILFLDEPTI---GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred CEEEEcCCCC---CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 0079999999 99999999999999999764 4 99999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-15 Score=131.87 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=53.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY------------KPTGGTILLRGQHIE 70 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCcceEEECCEECC
Confidence 456667776667889999887 89999999999999999999999965 899999999997653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-15 Score=138.07 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=89.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+...- +...+.+
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~------------~p~~G~i~~~g~~l~~~~~~~~--~~~r~~i 94 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE------------TPTGGELYYQGQDLLKADPEAQ--KLLRQKI 94 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEEcCcCCHHHH--HHHhCCE
Confidence 4688888887 89999999999999999999999965 8999999999988765432110 1123456
Q ss_pred EEEecCCC--c---------------------------------------------------------------------
Q 023887 227 SLLPLSGG--G--------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~--~--------------------------------------------------------------------- 235 (276)
++++|++. .
T Consensus 95 ~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~ 174 (327)
T PRK11308 95 QIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174 (327)
T ss_pred EEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC
Confidence 66666531 0
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. +||.....++.+++.++.+. + +|++|||++
T Consensus 175 lLilDEPts---~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 175 VVVADEPVS---ALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred EEEEECCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999963
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=125.58 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=91.8
Q ss_pred ceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.+.+..+|.... .+++++..+ +|+.++++||||||||||+|.++|.. +|+.|+|.+++.++....
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~------------~P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV------------TPSRGSIQLNGRRIEGPG 73 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc------------CcccceEEECCEeccCCC
Confidence 356677787666 688888887 89999999999999999999999965 999999999998775432
Q ss_pred cccCCCCceeeeEEEEecCCC-----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG----------------------------------------------------------- 234 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~----------------------------------------------------------- 234 (276)
.. .+.++|...
T Consensus 74 ae----------rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi 143 (259)
T COG4525 74 AE----------RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI 143 (259)
T ss_pred cc----------ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence 11 122222221
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|+|.- .+|..+.+.+..++-++... | ++++||+++
T Consensus 144 ARALa~eP~~LlLDEPfg---AlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 144 ARALAVEPQLLLLDEPFG---ALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred HHHhhcCcceEeecCchh---hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 179999998 89999999999999999975 4 999999864
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-15 Score=139.01 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=87.1
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...- +..++.+
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~------------~p~~G~I~~~G~~i~~~~~~~~--~~~r~~i 100 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV------------KATDGEVAWLGKDLLGMKDDEW--RAVRSDI 100 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCcEEEECCEECCcCCHHHH--HHHhCce
Confidence 3578888887 89999999999999999999999966 8999999999987754432110 0012344
Q ss_pred EEEecCCC--c---------------------------------------------------------------------
Q 023887 227 SLLPLSGG--G--------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~--~--------------------------------------------------------------------- 235 (276)
++++|++. .
T Consensus 101 ~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 180 (331)
T PRK15079 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEP 180 (331)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 55444320 0
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. +||.....++.+.+.++.+. + +|++|||++
T Consensus 181 ~llilDEPts---~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 181 KLIICDEPVS---ALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CEEEEeCCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999973
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=130.80 Aligned_cols=60 Identities=27% Similarity=0.260 Sum_probs=52.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+.+.|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.+
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~ 66 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------------APDHGTATYIMRS 66 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEeccc
Confidence 455677776666789999888 89999999999999999999999965 8999999998865
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=126.20 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=87.1
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeecccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT------------EGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC------------CCCCCcceEEEECCEE
Confidence 4556666753 35678888887 89999999999999999999999965 5 899999999987
Q ss_pred ccccccccCCCCceeeeEEEEecCCCc---------------------------------------------EEEecCCC
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---------------------------------------------YLADTPGF 243 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------~iiDtPg~ 243 (276)
+...... ..+.++++++.... +++|||..
T Consensus 74 ~~~~~~~------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 74 YKEFAEK------YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred Cccchhh------hcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 6543210 22334444443211 79999999
Q ss_pred CCCCCChhhHHHHHHHHHHHhhc-c--eEEEee
Q 023887 244 NQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIH 273 (276)
Q Consensus 244 ~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H 273 (276)
++|....+.+.+.+.++.+. + +++++|
T Consensus 148 ---~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 148 ---GLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred ---cCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 99999999999999999864 3 455554
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-15 Score=130.66 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=87.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|++...++++++.+ +|++++|+|+||+|||||+|+|+|... -+.|++|+|.++|.++......
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMND---------KIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---------CCCCCceEEEECCEecccCCHH
Confidence 345667776667889999887 899999999999999999999999641 1247899999998765431100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ..+.++++++.
T Consensus 76 ~-----~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 76 A-----LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150 (246)
T ss_pred H-----HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence 0 00011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 151 v~laral~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 201 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTS---ALDPISSGVIEELLKELSHNLSMIMVTHNM 201 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 01179999999 999999999999999986522 99999986
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-15 Score=131.43 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=87.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~ 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-+..
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~~~~~i~~v~q 74 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV------------APDEGVIKRNGKLRIGYVPQ 74 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCccCEEEecc
Confidence 455677777667888888887 89999999999999999999999965 899999988763 2222222
Q ss_pred ccCCCCce--e--eeEEE---------------Eec---------------------------CCCcEEEecCCCCCCCC
Q 023887 215 KSGRGKHT--T--RHVSL---------------LPL---------------------------SGGGYLADTPGFNQPSL 248 (276)
Q Consensus 215 ~~g~gk~t--t--~~~~~---------------~~~---------------------------~~~~~iiDtPg~~~~~l 248 (276)
........ + ....+ +-+ .+..+++|||.. ++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~---~L 151 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ---GV 151 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---CC
Confidence 11111000 0 00000 000 001179999999 99
Q ss_pred ChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 249 LKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 249 ~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|......+.+.+.++.+. + +|++||++
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999999999764 5 89999986
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-15 Score=132.76 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcc-cccccceeeccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGE-- 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~~~~-- 211 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .+ .|++|+|.++|.++..
T Consensus 15 ~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--------~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 15 SLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL--------IEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred EEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------cCCCCCceEEEECCEEccccc
Confidence 3566777887767899999988 8999999999999999999999996510 00 1689999998875421
Q ss_pred ------------cccccCCCCce------------------e-------eeEEE-------Ee-----c-----------
Q 023887 212 ------------VSTKSGRGKHT------------------T-------RHVSL-------LP-----L----------- 231 (276)
Q Consensus 212 ------------vs~~~g~gk~t------------------t-------~~~~~-------~~-----~----------- 231 (276)
+......-..+ . ....+ .. +
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 11000000000 0 00000 00 0
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 167 ral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~~~~~~tiiivtH~~ 213 (269)
T PRK14259 167 RTIAIEPEVILMDEPCS---ALDPISTLKIEETMHELKKNFTIVIVTHNM 213 (269)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 999999999999999986533 99999986
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-15 Score=134.11 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=90.7
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc---cceeecccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++ |+|+++|.++.
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~------------~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL------------LPDDNPNSKITVDGITLT 75 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCCCCCcEEEECCEECC
Confidence 4556677753 34788888887 89999999999999999999999965 7887 89999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
...... ....++++++++.
T Consensus 76 ~~~~~~-----~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~q 150 (282)
T PRK13640 76 AKTVWD-----IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQ 150 (282)
T ss_pred cCCHHH-----HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHH
Confidence 321100 1123334333210
Q ss_pred -------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|+|.. ++|....+.+.+.+.++.+. | ++++||+++
T Consensus 151 rv~laral~~~P~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTS---MLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 079999999 99999999999999999764 5 999999863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=131.11 Aligned_cols=127 Identities=15% Similarity=0.225 Sum_probs=88.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .-+.|++|+|.++|+++...+.
T Consensus 23 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL-------IPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred EEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc-------cCCCCCceEEEECCEEcccccc
Confidence 3567777887777899999888 8999999999999999999999996410 0012789999988866532100
Q ss_pred ccCCCCceeeeEEEEec---------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPL--------------------------------------------------------------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~--------------------------------------------------------------- 231 (276)
... ...+.++++++
T Consensus 96 ~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVV---NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHH---HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 000 00000111000
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 173 l~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPAS---ALDPISNAKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCc---ccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence 001179999999 999999999999999996533 99999986
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-14 Score=145.19 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=97.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++.+
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR------------AWDPQQGEILLNGQPIAD 406 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhhh
Confidence 456778888864 35799999988 899999999999999999999999 459999999999988776
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 407 ~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 407 YSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred CCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 54322 33444555444211
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 482 qRialARall~~~~ililDE~ts---~lD~~t~~~i~~~l~~~~~~~tviiitHr~~ 535 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTE---GLDAETERQILELLAEHAQNKTVLMITHRLT 535 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecChh
Confidence 79999999 999999999999999886533 899999863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-15 Score=140.04 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=85.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
+++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+...- .+...+.++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~------------~p~sG~I~i~G~~i~~~~~~~l-~~~~~~~ig 109 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI------------EPTRGQVLIDGVDIAKISDAEL-REVRRKKIA 109 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCEEEECCEECCcCCHHHH-HHHHhCCEE
Confidence 577777777 89999999999999999999999965 8999999999987654332100 000112344
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
+++|.... +|+|
T Consensus 110 yv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 110 MVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred EEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44443211 7999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 190 EPts---~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 190 EAFS---ALDPLIRTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred CCCc---cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 9999 9999999999999999975 35 89999986
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=144.87 Aligned_cols=121 Identities=20% Similarity=0.306 Sum_probs=94.1
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++...
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR------------VYDPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc------------CCCCCCCEEEECCEEhhhC
Confidence 446778888865 45789999888 899999999999999999999999 4599999999999877654
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 3211 22233333333210
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 478 qrl~lARall~~p~ililDEpts---~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATS---ALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 79999999 999999999999998886533 99999986
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=135.61 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=87.5
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++|++.. + ++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++........
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~i~~~~~~~~- 69 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT------------RPDEGEIVLNGRTLFDSRKGIF- 69 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECccCccccc-
Confidence 455665433 3 667766 89999999999999999999999965 8999999999987643211000
Q ss_pred CCceeeeEEEEecCCCc---------------------------------------------------------------
Q 023887 219 GKHTTRHVSLLPLSGGG--------------------------------------------------------------- 235 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~--------------------------------------------------------------- 235 (276)
.....+.++++++....
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 00112345555543211
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 p~lllLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 150 PRLLLMDEPLA---ALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred CCEEEEcCCCc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999999875 5 99999986
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=125.98 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=80.4
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeeccccccc---------cc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQRVGE---------VS 213 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~~~~---------vs 213 (276)
...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.++.. +.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~------------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 87 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV------------EGGGTTSGQILFNGQPRKPDQFQKCVAYVR 87 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc------------CCCCCCceEEEECCEECChHHhcccEEEeC
Confidence 45788888887 89999999999999999999999965 5 899999998865421 11
Q ss_pred cccCCCCc------------------eee-----eE-E-EEe---c-----------C----------------CCcEEE
Q 023887 214 TKSGRGKH------------------TTR-----HV-S-LLP---L-----------S----------------GGGYLA 238 (276)
Q Consensus 214 ~~~g~gk~------------------tt~-----~~-~-~~~---~-----------~----------------~~~~ii 238 (276)
.....-.+ ... .. . .+. + + +..+++
T Consensus 88 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illl 167 (226)
T cd03234 88 QDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL 167 (226)
T ss_pred CCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00000000 000 00 0 000 0 0 011799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 168 DEP~~---gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 168 DEPTS---GLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred eCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 99999 999999999999999998765 89999985
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=126.80 Aligned_cols=123 Identities=21% Similarity=0.218 Sum_probs=85.5
Q ss_pred ceeEEEecCC-------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec--c
Q 023887 137 YEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE--D 206 (276)
Q Consensus 137 ~~~~~~s~~~-------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~--g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++ |
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~~~g 71 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY------------LPDSGRILVRHEG 71 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEEecCC
Confidence 3456666642 35789999887 89999999999999999999999965 8999999987 3
Q ss_pred c--cccccccccCCCCceeeeEEEEecCC---------------------------------------------------
Q 023887 207 Q--RVGEVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------- 233 (276)
Q Consensus 207 ~--~~~~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------- 233 (276)
. ++...+... ......+.++++++..
T Consensus 72 ~~~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 72 AWVDLAQASPRE-VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred CccchhhcCHHH-HHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 2 221111000 0000001112221111
Q ss_pred ------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++++.+ ++++||++
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTA---SLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 1179999999 999999999999999998766 89999985
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=130.53 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=51.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI------------TGDKSAGSHIELLGRTV 71 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCCceEEEECCEec
Confidence 456677777777899999988 89999999999999999999999965 554 59999998765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-15 Score=149.52 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=93.6
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+|+|.| +|+|++|+|.++|.++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN------------LYQPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 456778888864 35799999998 899999999999999999999999 56999999999999987
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
++.... .++.+++++|++..
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 765332 44566666665321
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|+|||+. ++|..+.+.+.+ .......-+|++||.+
T Consensus 622 QkQRlalARALl~~p~ILILDEpTS---aLD~~te~~i~~-~~~~~~~TvIiItHrl 674 (711)
T TIGR00958 622 QKQRIAIARALVRKPRVLILDEATS---ALDAECEQLLQE-SRSRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcccc---ccCHHHHHHHHH-hhccCCCeEEEEeccH
Confidence 79999999 999988777776 2222111299999986
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=128.41 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=86.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc----cccceeeccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~~~~ 211 (276)
++.+.++| +...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++..
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL------------PAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCcCCEEEECCeeccc
Confidence 45566677 456788999887 89999999999999999999999976 66 89999999876521
Q ss_pred ----------cccccC--CCCcee---------------e----------eEEEEe-----------cC-----------
Q 023887 212 ----------VSTKSG--RGKHTT---------------R----------HVSLLP-----------LS----------- 232 (276)
Q Consensus 212 ----------vs~~~g--~gk~tt---------------~----------~~~~~~-----------~~----------- 232 (276)
+...+. .....+ . ...+-. ++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 111100 000000 0 000000 00
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 154 al~~~p~lLlLDEPt~---~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 154 ALLCEAPFIIADEPTT---DLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHhcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 01179999999 99999999999999998764 4 99999985
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-14 Score=136.25 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.... -+.|++|+|+++|+++..
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~--------~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD--------NWRVTADRMRFDDIDLLR 77 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC--------CCCCcceEEEECCEECCc
Confidence 345666663 234789999888 8999999999999999999999997620 124689999999876543
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
.+...- .+...+.+++++|+
T Consensus 78 ~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 78 LSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred CCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 211000 00000011111110
Q ss_pred --------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 --------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 --------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. +||.....++.+.+.++.+. + +|++|||+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts---~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTN---AMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 00179999999 99999999999999999874 5 99999996
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=142.69 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=94.5
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI------------WPPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEehhh
Confidence 445677888854 46799999988 8999999999999999999999994 59999999999987765
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 43221 22334444333210
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++...+ +|++||++
T Consensus 460 ~qrl~lARall~~~~ililDEpts---~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 460 RQRIALARALYGDPKLVVLDEPNS---NLDEEGEQALANAIKALKARGITVVVITHRP 514 (544)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence 79999999 999999999999999986544 89999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=128.13 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=87.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeeccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~ 211 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .+.| ++|+|+++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMN----------DLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccc----------ccCCCCCccceEEECCEECcC
Confidence 3466777787667889999888 89999999999999999999999964 1135 58999988865421
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
..... +...+.++++++.
T Consensus 77 ~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 00000 0000011111110
Q ss_pred -------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTS---ALDPISAGKIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc---ccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence 01179999999 999999999999999986533 99999986
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=127.32 Aligned_cols=115 Identities=24% Similarity=0.326 Sum_probs=88.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.+.|... .++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 4 ~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~------------~p~~G~v~i~g~~~~~~~~-- 68 (235)
T cd03299 4 ENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI------------KPDSGKILLNGKDITNLPP-- 68 (235)
T ss_pred EeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcCcCCh--
Confidence 3455566543 678888887 89999999999999999999999965 8999999999987654221
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
..+.++++++....
T Consensus 69 -----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 69 -----EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred -----hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHH
Confidence 11234444433211
Q ss_pred -------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|..+.+.+.+.+.++... + ++++||++
T Consensus 144 l~~~p~llllDEPt~---gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 144 LVVNPKILLLDEPFS---ALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHcCCCEEEECCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999998764 5 99999986
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-14 Score=138.47 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=86.9
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc----cccccccccCCCC
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEVSTKSGRGK 220 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~----~~~~vs~~~g~gk 220 (276)
...+++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|+ ++...+...- .+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~------------~p~~G~I~idG~~~~~~i~~~~~~~l-~~ 102 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN------------PVSRGSVLVKDGDGSIDVANCDAATL-RR 102 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEecccccccCCHHHH-HH
Confidence 334567777777 89999999999999999999999965 899999999986 3322221100 00
Q ss_pred ceeeeEEEEecCCCc-----------------------------------------------------------------
Q 023887 221 HTTRHVSLLPLSGGG----------------------------------------------------------------- 235 (276)
Q Consensus 221 ~tt~~~~~~~~~~~~----------------------------------------------------------------- 235 (276)
...+.+++++|.+..
T Consensus 103 ~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred HhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 011356666665322
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|.....++.+.+.++.+. + ++++|||++
T Consensus 183 P~ILLlDEPts---~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 183 ADILLMDEPFS---ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred CCEEEEECCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999864 5 999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=123.49 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=83.6
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~------------~~~~G~i~~~g-~i~ 69 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL------------EKLSGSVSVPG-SIA 69 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCCeEEEcC-EEE
Confidence 35566777653 5789999988 89999999999999999999999965 89999998887 222
Q ss_pred ccccccC-----------CCCcee-----e---eEEE-------------------Eec----------------CCCcE
Q 023887 211 EVSTKSG-----------RGKHTT-----R---HVSL-------------------LPL----------------SGGGY 236 (276)
Q Consensus 211 ~vs~~~g-----------~gk~tt-----~---~~~~-------------------~~~----------------~~~~~ 236 (276)
-+...+. .+.... . ...+ ..+ .+..+
T Consensus 70 ~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ll 149 (204)
T cd03250 70 YVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIY 149 (204)
T ss_pred EEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2211100 000000 0 0000 000 11228
Q ss_pred EEecCCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
++|||.. ++|....+.+.+ ++.+..+.+ +|++||++
T Consensus 150 llDEP~~---~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 150 LLDDPLS---AVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred EEeCccc---cCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 9999999 999988888877 566665555 89999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-14 Score=143.89 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=93.3
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|.| +|+|++|+|.++|+++.+
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR------------HFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEHhh
Confidence 345667778754 35789999888 899999999999999999999999 459999999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .+..+++++|++..
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 43221 22333443333211
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 457 ~qRi~lARall~~~~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tii~itH~~ 510 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALS---AVDGRTEHQILHNLRQWGEGRTVIISAHRL 510 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998875433 99999986
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=128.58 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN------------DLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCcCCCCceEEEECCEecc
Confidence 456677777667889999888 89999999999999999999999965 44 5899999887643
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... +...+.++++++.
T Consensus 78 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 78 SNNFDI---LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred cccccH---HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 100000 0000011111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tvii~sH~~ 209 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTS---ALDPISTGKIEELIINLKESYTIIIVTHNM 209 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999996533 89999986
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=144.29 Aligned_cols=121 Identities=22% Similarity=0.325 Sum_probs=94.4
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+| +|+|.+|+|.++|.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g------------l~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR------------FYDPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 445677888854 35789999888 999999999999999999999999 45999999999998776
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+... .++.+++++|++..
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 544321 22344444443211
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts---~lD~~~~~~i~~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATS---ALDAESEQLVQQALETLMKGRTTLIIAHRL 535 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCccc---ccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999888999998886433 99999975
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=129.37 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++.....
T Consensus 15 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 15 QVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY-------PEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred EEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-------CCCCcceEEEECCEEcccccc
Confidence 3566777887667899999888 89999999999999999999999965100 001589999998876531000
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ....+.++++++.
T Consensus 88 ~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 88 DI---ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ch---HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 00 0000011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 165 v~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 215 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCS---ALDPISTGRIEELITELKQDYTVVIVTHNM 215 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 01179999999 999999999999999996533 89999986
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=147.32 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=98.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g------------~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR------------LYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEehhh
Confidence 445678888853 34799999988 899999999999999999999999 459999999999998877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 65432 34455565554311
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 599 ~qri~lARall~~~~ililDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 653 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATS---ALDYESEALIMRNMREICRGRTVIIIAHRLS 653 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc---CCCHHHHHHHHHHHHHHhCCCEEEEEeCChH
Confidence 79999999 999999999999999885433 999999863
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-14 Score=128.09 Aligned_cols=123 Identities=17% Similarity=0.290 Sum_probs=88.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... +. |++|+|+++|.++...
T Consensus 7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD----------LVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc----------CCCCCCCceEEEECCEEcccc
Confidence 456777787667899999888 899999999999999999999999651 11 3689999988765321
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... ...++.++++++..
T Consensus 77 ~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 77 GVDP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQ 153 (252)
T ss_pred cCCh---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHH
Confidence 0000 00011111111110
Q ss_pred --------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 --------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 --------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~tiiivsH~~ 207 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPAS---ALDPISTLKIEELIEELKEKYTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCcEEEEECCH
Confidence 1179999999 999999999999999997644 99999986
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-14 Score=136.50 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=93.3
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeecccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~ 208 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|. +|+|.++|.+
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~------------~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL------------AANGRIGGSATFNGRE 82 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCCCeEEEECCEE
Confidence 4555666632 34688899888 89999999999999999999999966 664 9999999987
Q ss_pred ccccccccCCCCceeeeEEEEecCCC------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------ 234 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------ 234 (276)
+...+...- .+...+.+++++|+..
T Consensus 83 i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 83 ILNLPEKEL-NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred CCcCCHHHH-HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCccc
Confidence 755432210 0001134555555421
Q ss_pred --------------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 --------------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 --------------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. +||.....++.+.+.++.+. + +|++|||++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts---~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTT---ALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 079999999 99999999999999999874 5 999999973
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=129.11 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=87.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++...
T Consensus 6 ~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~-------~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 6 DVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV-------IPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred EEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc-------ccCCCcceEEEECCEecccccc
Confidence 3566777887667889999888 8999999999999999999999996510 00013799999988765210
Q ss_pred ------------ccccC-----------------CCC--c-e-ee-------eEEE------------Eec---------
Q 023887 213 ------------STKSG-----------------RGK--H-T-TR-------HVSL------------LPL--------- 231 (276)
Q Consensus 213 ------------s~~~g-----------------~gk--~-t-t~-------~~~~------------~~~--------- 231 (276)
..... .+. . . .. ...+ ..+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 00000 000 0 0 00 0000 000
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 159 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tviivsH~~ 207 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCS---ALDPISTLAIEDLINELKQDYTIVIVTHNM 207 (258)
T ss_pred HHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 011289999999 999999999999999996533 99999986
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=124.03 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=50.4
Q ss_pred eeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
..+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~ 66 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM------------QTLEGKVHWSNKNES 66 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCcccc
Confidence 34556665 345788888887 89999999999999999999999965 899999999887553
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-14 Score=145.07 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=104.0
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.|+.+.++|... +.++++++.+ +|+++|+|||||+||||+.++|.+ +|+|++|+|.+||.++.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r------------fY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR------------FYDPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCeehh
Confidence 4577888999755 4689999998 999999999999999999999997 88999999999999999
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
++..+. .+++++++.|++-+
T Consensus 534 ~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 534 DINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred hcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 987654 77899999887622
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+||.+. .||..+...+.+.+..+.+.- +|+++|-+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATS---ALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATS---ALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhh---hcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 69999999 999888888888888776644 99999976
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=125.81 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=92.6
Q ss_pred EEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 140 LFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 140 ~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
+..+|+... ++++++|.. +|+++++.|+||+||||++++|...+ .|++|+++++|.++..-+..
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL------------~P~~G~v~idg~d~~~~p~~-- 72 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL------------IPDSGKVTIDGVDTVRDPSF-- 72 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc------------cCCCceEEEeecccccChHH--
Confidence 344555443 678888887 89999999999999999999999966 99999999999887664422
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
.+++++.++-..+.
T Consensus 73 ----vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 73 ----VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ----HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 44556655522221
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|+|.. ++|-.+...+.+.+..++..| ++++||.|
T Consensus 149 vh~P~i~vlDEP~s---GLDi~~~r~~~dfi~q~k~egr~viFSSH~m 193 (245)
T COG4555 149 VHDPSILVLDEPTS---GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193 (245)
T ss_pred hcCCCeEEEcCCCC---CccHHHHHHHHHHHHHhhcCCcEEEEecccH
Confidence 79999999 999999999999999999877 99999987
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-14 Score=131.02 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=88.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcc-cccccceeecccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .. .|++|+|+++|.++...+.
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--------~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL--------IDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc--------ccCCCCceEEEECCEEcccccc
Confidence 456677776667889999888 8999999999999999999999996510 00 1689999998876532100
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. +...+.++++++.
T Consensus 114 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred ch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 00 0000111111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 191 LAraL~~~p~lLLLDEPts---~LD~~~~~~l~~~L~~~~~~~tiii~tH~~ 239 (285)
T PRK14254 191 IARAIAPDPEVILMDEPAS---ALDPVATSKIEDLIEELAEEYTVVIVTHNM 239 (285)
T ss_pred HHHHHHcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999997654 99999985
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-13 Score=128.32 Aligned_cols=107 Identities=29% Similarity=0.392 Sum_probs=79.1
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCcc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (276)
..++.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.+.. ...+..+++ +++.+|+.++.
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCC
Confidence 3467899999999999764222 22344444 4568999999999998653221 133456777 48899999998
Q ss_pred chHHHHhhc-c-------------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRL-R-------------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l-~-------------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++...+ + .-.++++|.+|+|||||+|+|++..
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 888776654 1 2479999999999999999999854
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=126.97 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=76.5
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-------cCCCCcee
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK-------SGRGKHTT 223 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~-------~g~gk~tt 223 (276)
++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.. ...-...|
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA------------QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLT 70 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCChhheEEecCcccCCCCC
Confidence 445555 89999999999999999999999965 89999999998765432110 00000000
Q ss_pred --eeEEE------------------------Eec---------------------------CCCcEEEecCCCCCCCCCh
Q 023887 224 --RHVSL------------------------LPL---------------------------SGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 224 --~~~~~------------------------~~~---------------------------~~~~~iiDtPg~~~~~l~~ 250 (276)
..+.+ +.+ .+..+|+|||.. ++|.
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~---gLD~ 147 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG---ALDA 147 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc---CCCH
Confidence 00000 000 001179999999 9999
Q ss_pred hhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 251 VTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 251 ~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
...+.+.+.+.++.+. + +|++||++
T Consensus 148 ~~~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 148 LTRGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999764 5 89999986
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=134.86 Aligned_cols=118 Identities=24% Similarity=0.242 Sum_probs=87.8
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++|++.. + ++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++........
T Consensus 6 l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~~~~~~~~~~- 70 (352)
T PRK11144 6 FKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT------------RPQKGRIVLNGRVLFDAEKGIC- 70 (352)
T ss_pred EEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccccc-
Confidence 455665432 2 567666 89999999999999999999999965 8999999999987643211000
Q ss_pred CCceeeeEEEEecCCCc--------------------------------------------------------------E
Q 023887 219 GKHTTRHVSLLPLSGGG--------------------------------------------------------------Y 236 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~--------------------------------------------------------------~ 236 (276)
.+...+.++++++.... +
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 00022345565554211 7
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 151 LLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 151 LMDEPLA---SLDLPRKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred EEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 9999999 99999999999999999865 5 99999986
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-14 Score=130.79 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=87.9
Q ss_pred ceeEEEecC---------CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.+.|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~sG~i~~~g 73 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE------------SPSQGNVSWRG 73 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345566665 245788999888 89999999999999999999999965 89999999999
Q ss_pred ccccccccccCCCCceeeeEEEEecC------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS------------------------------------------------------ 232 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~------------------------------------------------------ 232 (276)
.++.......- +...+.++++++.
T Consensus 74 ~~~~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 74 EPLAKLNRAQR--KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred EeccccChhHH--HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 86543211000 0000011111110
Q ss_pred ------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 ------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 ------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.++ + +|++||++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVS---NLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 00179999999 99999999999999999864 4 89999985
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=130.63 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=88.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|+++|.++...
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p-------~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK-------VSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc-------CCCCCCceEEEECCEEccccch
Confidence 4567788887777899999988 8999999999999999999999996510 00014789999888654321
Q ss_pred -----------ccccCCCC-------------c--ee------------eeEEEE------------ecC----------
Q 023887 213 -----------STKSGRGK-------------H--TT------------RHVSLL------------PLS---------- 232 (276)
Q Consensus 213 -----------s~~~g~gk-------------~--tt------------~~~~~~------------~~~---------- 232 (276)
+.....-. + .+ ....+. .++
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 00000000 0 00 000000 000
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 176 ral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 222 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTS---ALDPTTTEKIEEFIRSLADRLTVIIVTHNL 222 (276)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999987644 99999986
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-15 Score=130.85 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=101.3
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
..+..+|++...++++++.+ +|+++++.||||+||||.++++.|.. +|++|+|++++.++...+-.
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv------------~~d~G~i~ld~~diT~lPm~- 74 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV------------RPDSGKILLDDEDITKLPMH- 74 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE------------ecCCceEEECCcccccCChH-
Confidence 34567788888889999887 89999999999999999999999966 99999999999998876533
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
+..+..++|++|+...
T Consensus 75 ---~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 75 ---KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred ---HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 2255667777776422
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. +.|++...++.+....+++.| |+++-|+.
T Consensus 152 RaLa~~P~fiLLDEPFA---GVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 152 RALAANPKFILLDEPFA---GVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHhcCCCEEEecCCcc---CCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 69999999 999999999999999999987 89998874
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=128.93 Aligned_cols=127 Identities=18% Similarity=0.126 Sum_probs=87.9
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV------------DIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------CCCCCeEEECCEEhhh
Confidence 345667777765 45788888887 89999999999999999999999955 8999999998876533
Q ss_pred ccc------------ccCCCCce------------ee---------eE----EEE-------------ecC---------
Q 023887 212 VST------------KSGRGKHT------------TR---------HV----SLL-------------PLS--------- 232 (276)
Q Consensus 212 vs~------------~~g~gk~t------------t~---------~~----~~~-------------~~~--------- 232 (276)
.+. .+..-..+ .. .. ..+ .++
T Consensus 88 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 88 LPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred CCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 110 00000000 00 00 000 000
Q ss_pred -------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 -------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 -------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+++|+|.. ++|....+.+.+.+.++.+.. ++++||+++
T Consensus 168 aral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 216 (257)
T cd03288 168 ARAFVRKSSILIMDEATA---SIDMATENILQKVVMTAFADRTVVTIAHRVS 216 (257)
T ss_pred HHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHhcCCCEEEEEecChH
Confidence 11179999999 999999999999998875422 999999863
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=130.15 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc--------ccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~--------~G~i~~~g~ 207 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|.++|.
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~------------~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL------------TGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCcccccccCCceEEEECCE
Confidence 456777787777899999988 89999999999999999999999965 776 899988886
Q ss_pred ccccc------------ccccC------------CC--Cce---------------------------eeeEE-------
Q 023887 208 RVGEV------------STKSG------------RG--KHT---------------------------TRHVS------- 227 (276)
Q Consensus 208 ~~~~v------------s~~~g------------~g--k~t---------------------------t~~~~------- 227 (276)
++... +.... .+ .+. .+...
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 54321 00000 00 000 00000
Q ss_pred --------EEe--------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 228 --------LLP--------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 228 --------~~~--------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.. ..+..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA---ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 000 1345579999999 99999999999999999865 5 89999986
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-15 Score=130.45 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=86.4
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+...|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..........+
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~~~ 94 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY------------PPDSGTVTVRGRVSSLLGLGGG 94 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEchhhccccc
Confidence 3444566666788888888 89999999999999999999999965 8999999999875432111000
Q ss_pred CCCcee--eeE----------------------EEEec---------------------------CCCcEEEecCCCCCC
Q 023887 218 RGKHTT--RHV----------------------SLLPL---------------------------SGGGYLADTPGFNQP 246 (276)
Q Consensus 218 ~gk~tt--~~~----------------------~~~~~---------------------------~~~~~iiDtPg~~~~ 246 (276)
.....| ..+ ..+.+ ++..+|+|||..
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~--- 171 (224)
T cd03220 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA--- 171 (224)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---
Confidence 000000 000 00000 011179999999
Q ss_pred CCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 247 SLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 247 ~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++|..+.+.+.+.+.++.+.+ +|++||++
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~ 202 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999999999997765 99999985
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-14 Score=157.09 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=103.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|... ..++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.+
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r------------l~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR------------IVELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCEeccc
Confidence 4567888889643 5899999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++-.
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 87544 66778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1381 QrlaLARALLr~p~ILILDEATS---aLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATA---AVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1434 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCEEEEEeCChH
Confidence 69999999 999999999999998876543 999999864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=140.15 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|+++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~------------~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY------------PHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 355677777667899999888 89999999999999999999999965 54 7999999886543211
Q ss_pred -------------cccCCCCcee------------------------e-------eEEE---E------ecC--------
Q 023887 214 -------------TKSGRGKHTT------------------------R-------HVSL---L------PLS-------- 232 (276)
Q Consensus 214 -------------~~~g~gk~tt------------------------~-------~~~~---~------~~~-------- 232 (276)
..+..-...| . ...+ . .++
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 0000000000 0 0000 0 000
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 152 iA~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSS---SLTEKETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred HHHHHhhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 01179999999 999999999999999998776 89999986
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-14 Score=127.99 Aligned_cols=149 Identities=28% Similarity=0.349 Sum_probs=96.6
Q ss_pred hhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCce-eEEEecCCccc-
Q 023887 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKLG- 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~- 149 (276)
.+.++|.++.|-|++.|..+-+ .+++++ ..++.+||+||+||++..+.....+.++.-.+. .+..+......
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 4679999999999999976644 677776 378999999999999976666555555543332 22222211111
Q ss_pred --------hHHHHhhc--------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 150 --------LDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 150 --------l~~l~~~l--------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+..+...+ .+-.++++|.||+|||||||++..... ......
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~L----------------------rk~k~a- 174 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHL----------------------RKKKAA- 174 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHh----------------------hhccce-
Confidence 11111111 235799999999999999999987541 111111
Q ss_pred cccCCCCceeeeEEE-Eec--CCCcEEEecCCCCCCCCCh
Q 023887 214 TKSGRGKHTTRHVSL-LPL--SGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~-~~~--~~~~~iiDtPg~~~~~l~~ 250 (276)
..|..+..|+.++. +.. .+-.+++||||+..|++.+
T Consensus 175 -~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 175 -RVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred -eccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 12333347776665 333 3467999999998887643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=130.56 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=90.9
Q ss_pred CceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|.|.. + .+|+|+++|.++...
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~------------~-~~G~I~i~g~~i~~~ 70 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGDIQIDGVSWNSV 70 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEhhhC
Confidence 3567777773 345799999988 89999999999999999999999964 5 689999999877543
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.++++++.+..
T Consensus 71 ~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 71 PLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred CHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 2111 12233444333211
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|+|.. ++|..+...+.+.+.++.... +|++||+++
T Consensus 146 rl~LaRall~~p~illlDEpts---~LD~~~~~~l~~~l~~~~~~~tii~isH~~~ 198 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSA---HLDPITYQVIRKTLKQAFADCTVILSEHRIE 198 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccc---cCCHHHHHHHHHHHHHhcCCCEEEEEECCHH
Confidence 79999999 999999999999999875432 999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-14 Score=126.23 Aligned_cols=123 Identities=19% Similarity=0.267 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ..| ++|+|+++|.++...
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 6 VKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND----------LIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred EEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc----------ccCCCCCceEEEECCEEcccc
Confidence 456777777667889999988 899999999999999999999999641 012 689999988765320
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
+... ...+..++++++.
T Consensus 76 ~~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 76 DIDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred ccch---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 0000 0000001111110
Q ss_pred ------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 153 qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTS---ALDPISTLKIEELIQELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 01179999999 999999999999999986532 99999986
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-14 Score=126.26 Aligned_cols=61 Identities=18% Similarity=0.374 Sum_probs=51.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|.++
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH------------DLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceeEEECCEEc
Confidence 456677777667899999888 89999999999999999999999965 44 379988888665
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-14 Score=129.35 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN------------DTIDGCRVTGKITLDGED 87 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------ccccCCCCceEEEECCEE
Confidence 34567788887767889999888 89999999999999999999999965 4 489999999876
Q ss_pred cccc--------------ccccCCCCcee----------------------------eeEEEE------------ec---
Q 023887 209 VGEV--------------STKSGRGKHTT----------------------------RHVSLL------------PL--- 231 (276)
Q Consensus 209 ~~~v--------------s~~~g~gk~tt----------------------------~~~~~~------------~~--- 231 (276)
+... ...+..-..+. ....+. .+
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 5321 00000000000 000000 00
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~l~~~~tiiivtH~~ 222 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCS---ALDPIATAKVEELIDELRQNYTIVIVTHSM 222 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHhcCCeEEEEEcCH
Confidence 001179999999 999999999999999997633 99999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-14 Score=156.33 Aligned_cols=122 Identities=24% Similarity=0.235 Sum_probs=103.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.+
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r------------l~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR------------IVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCceEEECCEEhhh
Confidence 456788888954 36899999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++-.
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 76543 56778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1378 QrlaLARALLr~~~ILILDEATS---aLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATA---SVDVRTDSLIQRTIREEFKSCTMLVIAHRLN 1431 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 69999999 999999999999988875533 999999863
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-13 Score=127.60 Aligned_cols=107 Identities=25% Similarity=0.452 Sum_probs=80.7
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCcc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (276)
..++.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.+... ..+.++++ +++.+|+.++.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGR 146 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCC
Confidence 3467899999999999764322 22455555 45689999999999997654221 33566788 78999999999
Q ss_pred chHHHHhhc----c--C---------CEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRL----R--D---------QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l----~--g---------~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++...+ + . -.++++|.+|+|||||+|.|++..
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 888776653 1 1 269999999999999999999854
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-14 Score=127.87 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|.++|.++......
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-------~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL-------IKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc-------ccCCCcceEEEECCEEcccccch
Confidence 455666776666789999888 8999999999999999999999996510 00014799999988765321000
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ....+.++++++.
T Consensus 88 ~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 V---VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred H---HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 0 0000011111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 165 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~tiiivsH~~ 213 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTS---ALDPISTARIEDLIMNLKKDYTIVIVTHNM 213 (258)
T ss_pred HHHHHHcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHhhCCEEEEEECCH
Confidence 01179999999 999999999999999986533 99999986
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-14 Score=126.79 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|+++.
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN------------DDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------ccccCCCcceEEEECCEEcc
Confidence 456777777667888999887 89999999999999999999999965 3 47899999887642
Q ss_pred cc--------------ccccCC-----------C-------Cc--ee-------eeEEEE-------e-----c------
Q 023887 211 EV--------------STKSGR-----------G-------KH--TT-------RHVSLL-------P-----L------ 231 (276)
Q Consensus 211 ~v--------------s~~~g~-----------g-------k~--tt-------~~~~~~-------~-----~------ 231 (276)
.. ...+.. + .. .. ....+. . +
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 10 000000 0 00 00 000000 0 0
Q ss_pred ----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 155 r~~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tiiiisH~~ 206 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTS---ALDPISSSEIEETLMELKHQYTFIMVTHNL 206 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCc---cCCHHHHHHHHHHHHHHHcCCeEEEEECCH
Confidence 001179999999 999999999999999986533 99999986
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-14 Score=126.57 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN------------DLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CcccCCCCccEEEECCEecc
Confidence 455667776667889999888 89999999999999999999999965 4 37899999887653
Q ss_pred ccccccCCCCceeeeEEEEec-----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPL----------------------------------------------------------- 231 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~----------------------------------------------------------- 231 (276)
..+... ....+.++++++
T Consensus 75 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 75 DKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 210000 000000000000
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 206 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTS---ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCeEEEEEcCH
Confidence 011179999999 999999999999999987644 99999986
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-14 Score=128.78 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=87.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++...
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-------~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVEL-------VPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC-------CCCCCCceeEEECCEEcccccc
Confidence 3456677776667788888887 8999999999999999999999996510 00016899999988765210
Q ss_pred ------------cccc------------------CCCCc-e-eee-------E----EE--------Eec----------
Q 023887 213 ------------STKS------------------GRGKH-T-TRH-------V----SL--------LPL---------- 231 (276)
Q Consensus 213 ------------s~~~------------------g~gk~-t-t~~-------~----~~--------~~~---------- 231 (276)
...+ +.... . ... . .+ ..+
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 0000 00000 0 000 0 00 000
Q ss_pred ------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 179 araL~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 226 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTS---ALDPISTLKVEELVQELKKDYSIIIVTHNM 226 (271)
T ss_pred HHHHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHcCCEEEEEEcCH
Confidence 011189999999 999999999999999987633 99999986
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-14 Score=141.92 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=90.7
Q ss_pred cCceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+. ..++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.+
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG------------LYIPQEGEILLDGAA 405 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEE
Confidence 4567788888642 4789999887 899999999999999999999999 559999999999988
Q ss_pred ccccccccCCCCceeeeEEEEecCC-------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSG------------------------------------------------------- 233 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~------------------------------------------------------- 233 (276)
+...+... .+..+++++|+.
T Consensus 406 i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 406 VSADSRDD-----YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred CCCCCHHH-----HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 76543211 112222322221
Q ss_pred ---------CcEEEecCCCCCCCCChhhHHHHHHHH-HHHhhcc--eEEEeeeC
Q 023887 234 ---------GGYLADTPGFNQPSLLKVTKQSLAQTF-PEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---------~~~iiDtPg~~~~~l~~~~~~~l~~~f-~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+.+.+.+.+ +++...+ +|++||++
T Consensus 481 laRall~~~~ililDE~ts---~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAA---DQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred HHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 0179999999 99999888887654 4565444 99999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=125.76 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=51.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN------------DIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CccccCCcccEEEECCEEc
Confidence 456677777667889999887 89999999999999999999999966 554 69999888765
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-14 Score=126.32 Aligned_cols=121 Identities=19% Similarity=0.334 Sum_probs=86.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|.++.
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN------------DHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCCCcceEEEECCEEcc
Confidence 456667776667788999887 89999999999999999999999965 4 38899999886543
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... ......++++++.
T Consensus 74 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 210000 0000011111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|..+...+.+.+.++.+.. ++++||++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tili~sH~~ 205 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTS---ALDPIATQRIEKLLEELSENYTIVIVTHNI 205 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 11179999999 999999999999999987533 99999986
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-14 Score=127.79 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=87.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc---
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV--- 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v--- 212 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++...
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI-------PGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc-------CCCCCceEEEECCEEccccccC
Confidence 456677777667889999988 89999999999999999999999964100 0014789999988665210
Q ss_pred -----------ccccCCCCce--------------e-----------eeEEEE-------e-----c-------------
Q 023887 213 -----------STKSGRGKHT--------------T-----------RHVSLL-------P-----L------------- 231 (276)
Q Consensus 213 -----------s~~~g~gk~t--------------t-----------~~~~~~-------~-----~------------- 231 (276)
......-..+ . ....+. . +
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 0000000000 0 000000 0 0
Q ss_pred ---CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 166 l~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~ 210 (264)
T PRK14243 166 IAVQPEVILMDEPCS---ALDPISTLRIEELMHELKEQYTIIIVTHNM 210 (264)
T ss_pred HhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 011279999999 999999999999999997644 99999986
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-14 Score=140.25 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=90.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++.+.
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCCC
Confidence 456778888864 45799999988 899999999999999999999999 4599999999999877643
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... .+.++++++|++
T Consensus 391 ~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 391 QPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred CHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 2111 111222222211
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+++|||+. ++|..+.+.+.+.+.+..+ .+ +|++||++
T Consensus 466 ~~~~ililDE~ts---~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 466 EERDILLLDEWAA---DQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred cCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 1179999999 9999988888887765543 34 99999975
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=130.66 Aligned_cols=127 Identities=22% Similarity=0.246 Sum_probs=100.2
Q ss_pred eeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|... ..++++++.+ +|++++|||.|||||||+.++|+|.... .-....+|+|.|+|+++..+
T Consensus 5 ~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~-------~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 5 KNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK-------PNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred eeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC-------CCCeEeeeEEEECCcccccC
Confidence 4455555442 4689999998 8999999999999999999999997720 00124679999999998888
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+++ .+.+..-+.+++++|++..
T Consensus 78 ~~~-~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 78 SEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred CHH-HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 764 2223345788999987421
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|.|||+- +||-..+.++.+++.++.+ .| +|++|||+
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTT---ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTT---ALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcc---hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 69999999 9999999999999999997 45 99999997
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-14 Score=127.87 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.... ..-.|++|+|.++|.++.....
T Consensus 22 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT-------IDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred EEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc-------cCCCCcceEEEECCEEcccccC
Confidence 3456777777677889999888 8999999999999999999999996510 0002589999999876532000
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ....+.++++++.
T Consensus 95 ~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NV---YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred Ch---HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 00 0000011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 172 l~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 222 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPAS---ALDPISTMQLEETMFELKKNYTIIIVTHNM 222 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 01179999999 999999999999999996533 99999986
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-14 Score=127.50 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=89.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
.+...+.|++...++++++.+ +|++++|+|+||+|||||+++|+|.. .| ++|+|+++|.++.
T Consensus 11 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN------------DLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------ccccCCCCceEEEECCEecc
Confidence 355666777767889999888 89999999999999999999999965 44 7899999987654
Q ss_pred ccccccCCCCceeeeEEEEecCC---------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------------- 233 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------------- 233 (276)
..+... ....+.++++++..
T Consensus 79 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 79 GKGVDP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccccch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 211000 00111222222211
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
..+++|+|.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 156 qrv~laral~~~p~llllDEPts---gLD~~~~~~l~~~l~~~~~~~tii~isH~~~ 209 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCS---ALDPIATRRVEELMVELKKDYTIALVTHNMQ 209 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 0179999999 999999999999999996533 899999863
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-14 Score=126.78 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=50.8
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~------------~~~~G~v~~~G 71 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI------------EIYDSKIKVDG 71 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCcCceeEcC
Confidence 55678888898888899999998 89999999999999999999999965 77776554443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-14 Score=130.33 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=90.5
Q ss_pred ecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc
Q 023887 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
.+.....+++++..+ .|+.+++.|+||+|||||+++|+|.. .|++|.|.++|+.....+...-
T Consensus 11 ~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe------------~p~~G~I~~~~~~l~D~~~~~~---- 74 (345)
T COG1118 11 RFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE------------TPDAGRIRLNGRVLFDVSNLAV---- 74 (345)
T ss_pred hcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC------------CCCCceEEECCEeccchhccch----
Confidence 334444566677776 79999999999999999999999977 8999999999994443332111
Q ss_pred eeeeEEEEecCCCc------------------------------------------------------------------
Q 023887 222 TTRHVSLLPLSGGG------------------------------------------------------------------ 235 (276)
Q Consensus 222 tt~~~~~~~~~~~~------------------------------------------------------------------ 235 (276)
..+.+++++|...+
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 34677777775422
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.- .+|..-..++++-+.++++. + .+++|||.
T Consensus 155 eP~vLLLDEPf~---ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 155 EPKVLLLDEPFG---ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred CCCeEeecCCch---hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 69999999 99988899999999999986 6 89999996
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=125.88 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=87.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|... ..| ++|+|.++|.++...
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND----------LIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc----------CCCCCCcceEEEECCEEcccc
Confidence 456677777667899999888 899999999999999999999999641 013 589999988765432
Q ss_pred ccccCCCCceeeeEEEEec-------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPL------------------------------------------------------------- 231 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~------------------------------------------------------------- 231 (276)
+..... ....++++++
T Consensus 79 ~~~~~~---~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 79 GADVVA---LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred ccchhh---hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 100000 0000111000
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 156 qrv~laral~~~p~lllLDEP~~---gLD~~~~~~l~~~l~~~~~~~tvii~sh~~ 208 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCS---ALDPIATAKIEDLIEDLKKEYTVIIVTHNM 208 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhhCceEEEEEcCH
Confidence 011179999999 999999999999999987643 99999985
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-14 Score=126.16 Aligned_cols=129 Identities=21% Similarity=0.206 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc----
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE---- 211 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~---- 211 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|++.++|.++..
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL-------IEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc-------ccCCCCceEEEECCEEcccccch
Confidence 455667777667899999988 8999999999999999999999996510 0001468999888865421
Q ss_pred ---------cccccCCCCce--------------e------e-------eEEEE------------ec------------
Q 023887 212 ---------VSTKSGRGKHT--------------T------R-------HVSLL------------PL------------ 231 (276)
Q Consensus 212 ---------vs~~~g~gk~t--------------t------~-------~~~~~------------~~------------ 231 (276)
+...+..-..+ . . ...+. .+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 00000000000 0 0 00000 00
Q ss_pred ----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 159 al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 204 (249)
T PRK14253 159 TIAMEPDVILMDEPTS---ALDPIATHKIEELMEELKKNYTIVIVTHSM 204 (249)
T ss_pred HHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 011179999999 999999999999999997644 99999986
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-14 Score=125.19 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=86.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... +.| ++|+|+++|.++...
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND----------LIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc----------cCCCCCcccEEEEcCEEcccc
Confidence 456677777667889999887 899999999999999999999999641 124 589999888765310
Q ss_pred --------------ccccCC----------------C--C-ce-eee-------EEE-------EecC------------
Q 023887 213 --------------STKSGR----------------G--K-HT-TRH-------VSL-------LPLS------------ 232 (276)
Q Consensus 213 --------------s~~~g~----------------g--k-~t-t~~-------~~~-------~~~~------------ 232 (276)
...... + . .. ... ..+ ....
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 000000 0 0 00 000 000 0000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 158 ~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 207 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTS---ALDPISSTQIENMLLELRDQYTIILVTHSM 207 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 01179999999 999999999999999997644 99999986
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-14 Score=123.07 Aligned_cols=121 Identities=22% Similarity=0.269 Sum_probs=96.5
Q ss_pred ceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.++++.... +.++.++..+ +|++.+++||||+|||||.++|+|.. -|++++|+|.++|+++.+++.
T Consensus 6 I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p----------~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP----------KYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred EeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CceEecceEEECCcccccCCH
Confidence 45677777774 8999999998 89999999999999999999999987 799999999999999887654
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
..- .+..+-+-.|.
T Consensus 76 ~ER----Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 76 DER----ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred hHH----HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 321 11111111111
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
++..|+|+|-. ++|-..-+.+.+.+.++++.+ ++++||+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DS---GLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDS---GLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCc---CccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 11169999999 999888899999999999876 9999996
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=120.07 Aligned_cols=111 Identities=28% Similarity=0.336 Sum_probs=92.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
++.++++.+ +|+.++|||+||+||||||-.|+|.. +|++|+|.+.|+++..+.+ +++.+-..++++
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd------------~~ssGeV~l~G~~L~~ldE-d~rA~~R~~~vG 91 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD------------DPSSGEVRLLGQPLHKLDE-DARAALRARHVG 91 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC------------CCCCceEEEcCcchhhcCH-HHHHHhhcccee
Confidence 466666666 89999999999999999999999977 9999999999999988874 456666667888
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
+++|++.. ++.|
T Consensus 92 fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD 171 (228)
T COG4181 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD 171 (228)
T ss_pred EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc
Confidence 88887533 6999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|+- ++|..+-+.+.+++-++.. .| ++++|||.
T Consensus 172 EPTG---NLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 172 EPTG---NLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred CCCC---CcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 9999 8999888888887666654 56 89999985
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-14 Score=127.09 Aligned_cols=125 Identities=22% Similarity=0.317 Sum_probs=87.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--c---cccceeeccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~~ 209 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + | ++|+|+++|.++
T Consensus 14 ~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 14 QINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI------------QMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred EEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceEEEECCEEc
Confidence 4556777777667888998888 89999999999999999999999965 3 3 589998888765
Q ss_pred cc--------------cccccCC----------------C---Cc-eee-------eEEEE-------e-----c-----
Q 023887 210 GE--------------VSTKSGR----------------G---KH-TTR-------HVSLL-------P-----L----- 231 (276)
Q Consensus 210 ~~--------------vs~~~g~----------------g---k~-tt~-------~~~~~-------~-----~----- 231 (276)
.. ++..... + +. ... ...+. . +
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred cccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 31 0000000 0 00 000 00000 0 0
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 162 qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 214 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTS---ALDPVSTRKIEELILKLKEKYTIVIVTHNM 214 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 001179999999 999999999999999997633 99999986
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-14 Score=122.52 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=92.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+..+|++...+++++..+ +|++++|+||||+|||||+.++.+.. ++++|+|+++|+++...+.+.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~------------~~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL------------KKDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc------------cccCceEEEeeeecccCChHH
Confidence 45667788888999999988 89999999999999999999999966 899999999998876522110
Q ss_pred -------------------------------CCCCc---------------------------------eeeeEEEEe-c
Q 023887 217 -------------------------------GRGKH---------------------------------TTRHVSLLP-L 231 (276)
Q Consensus 217 -------------------------------g~gk~---------------------------------tt~~~~~~~-~ 231 (276)
.+||- .+..++|+. |
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence 00111 111111111 1
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+-.-.++|||.. +||-....++.+.++.+.++ + ++++-||.|
T Consensus 153 dTdyvlLDEPLN---NLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 153 DTDYVLLDEPLN---NLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred cCcEEEecCccc---ccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 112269999999 89887788888999888864 5 999999975
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-14 Score=128.59 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=86.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ..+ |++|+|.++|.++....
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---------~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND---------LIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCCceEEEECCEEhhhcc
Confidence 456677776666788998888 899999999999999999999999641 012 58999999887653210
Q ss_pred cccCCCCceeeeEEEEec--------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPL-------------------------------------------------------------- 231 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~-------------------------------------------------------------- 231 (276)
.... .....++++++
T Consensus 113 ~~~~---~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 113 TDEV---LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cchH---HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 0000 00000000000
Q ss_pred ----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.... +|++||++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~~~~~~tvIivsH~~ 241 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTS---ALDPKATAKIEDLIQELRGSYTIMIVTHNM 241 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 001179999999 999999999999999987533 99999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-14 Score=154.19 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|+|+||+|||||+++|.+ +|+|++|+|.+||.++.+
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r------------l~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR------------INESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CccCCCCeEEECCEEccc
Confidence 456788889965 35899999998 899999999999999999999999 569999999999999998
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-.
T Consensus 1353 i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1353 IGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred cCHHH-----HHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 87544 66778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTS---alD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATA---AVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999 999999888999888765543 999999763
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-14 Score=154.02 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=102.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|..+ ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.+||.++..
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr------------l~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR------------MVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEccc
Confidence 5578888999653 4799999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-+
T Consensus 1377 i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1377 YGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred CCHHH-----HHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 76543 56778888887422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATS---aLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATA---NIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence 69999999 999999999999888865433 999999763
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-14 Score=132.09 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=92.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
++.+.++.+ .|++.+++|-||||||||+++|.+.. +|++|+|+++|.++..++... ...-.++.++
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi------------ept~G~ilv~g~di~~~~~~~-Lr~~Rr~~~s 109 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI------------EPTRGEILVDGKDIAKLSAAE-LRELRRKKIS 109 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC------------CCCCceEEECCcchhcCCHHH-HHHHHhhhhh
Confidence 566666666 79999999999999999999999965 999999999999998877542 2333456777
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
|++|.+++ +++|
T Consensus 110 MVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 110 MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred hhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence 88876544 6999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
||.. .||+....++.+-+-++... . |+++|||++
T Consensus 190 EaFS---ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 190 EAFS---ALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred Cchh---hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 9999 99999999988888888764 3 999999985
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-13 Score=124.26 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=50.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+.+.+.|.....++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~-------~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 9 KNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFV-------PNCKVKGELDIDGIDV 74 (251)
T ss_pred eeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccC-------CCCCcceEEEECCEeh
Confidence 45666776667889999887 89999999999999999999999965100 0015789999888654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-14 Score=124.88 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=87.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++ |++|+|+++|.++...+
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND---------LIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc---------cCCCCCCccEEEECCEEccccc
Confidence 456777777667889999888 899999999999999999999999641 012 48999999997653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
... ....+.++++++.
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 000 0000011111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|......+.+.+.++.+.. ++++||++
T Consensus 154 rv~laral~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~tiii~sh~~ 205 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCS---ALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 01179999999 999999999999999996533 99999986
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=125.14 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=83.1
Q ss_pred EEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-----------ecc
Q 023887 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (276)
Q Consensus 140 ~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (276)
+.++|+.+ ..++++++ + +|++++|+|+||+|||||+|+|+|.. +|++|+|+ ++|
T Consensus 6 ~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 6 PVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL------------KPNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEeeccccchhhhhccC
Confidence 44566544 46788874 5 89999999999999999999999955 99999996 667
Q ss_pred ccccccccccCCCCceeeeEEEE----ec---------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLL----PL--------------------------------------------------- 231 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~----~~--------------------------------------------------- 231 (276)
.++........++ + ..+.++ .+
T Consensus 73 ~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 73 SELQNYFTKLLEG-D--VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred chhhhhhHHhhhc-c--cceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 6654321100000 0 000110 00
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+++|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 150 laral~~~p~illlDEPts---~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 150 IAAALARDADFYFFDEPSS---YLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHhCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 001179999999 999999999999999998765 99999986
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-13 Score=125.97 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=88.3
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~------------~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN------------DLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC------------CCccCCCCceEEEECCEE
Confidence 34567777887667888988888 89999999999999999999999965 4 489999998876
Q ss_pred ccccccccCCCCceeeeEEEEecC--------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLS-------------------------------------------------------- 232 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~-------------------------------------------------------- 232 (276)
+....... ......++++++.
T Consensus 94 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 94 IYDKKVDV---AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CcccccCH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 53200000 0000001111100
Q ss_pred ----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~~~~~~tiiivtH~~ 227 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTS---ALDPISTLKIEELITELKSKYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCeEEEEeCCH
Confidence 01179999999 999999999999999997633 99999986
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-14 Score=141.58 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=85.8
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...- +...+.+
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~i~~~~~~~~--~~~~~~i 403 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV------------ESQGGEIIFNGQRIDTLSPGKL--QALRRDI 403 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCcEEEECCEECCcCCHHHH--HHhcCCe
Confidence 4688888887 89999999999999999999999966 8999999999986643321000 0011234
Q ss_pred EEEecCCC------------------------------------------------------------------------
Q 023887 227 SLLPLSGG------------------------------------------------------------------------ 234 (276)
Q Consensus 227 ~~~~~~~~------------------------------------------------------------------------ 234 (276)
++++|++.
T Consensus 404 ~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ 483 (623)
T PRK10261 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK 483 (623)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 44444310
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. +||......+.+++.++.+. + +|++|||++
T Consensus 484 llllDEPts---~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 484 VIIADEAVS---ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred EEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 079999999 99999999999999999764 5 999999963
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-14 Score=123.02 Aligned_cols=111 Identities=25% Similarity=0.303 Sum_probs=76.9
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc----cccceeecccccccc----------cc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEV----------ST 214 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~~~~v----------s~ 214 (276)
++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++... ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 69 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL------------PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ 69 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCccCccccEEEECCEechhhhhhhheeEEEec
Confidence 34556666 89999999999999999999999966 67 899999998664321 11
Q ss_pred ccC--CCCcee---------eeEEE-----------------Ee------------c----------------CCCcEEE
Q 023887 215 KSG--RGKHTT---------RHVSL-----------------LP------------L----------------SGGGYLA 238 (276)
Q Consensus 215 ~~g--~gk~tt---------~~~~~-----------------~~------------~----------------~~~~~ii 238 (276)
.+. .....+ ..... +. + ++..+++
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 100 000000 00000 00 0 0011799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 DEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 150 DEPTT---DLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred cCCcc---ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999 99999999999999999864 5 89999986
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-14 Score=124.49 Aligned_cols=124 Identities=13% Similarity=0.212 Sum_probs=85.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++| ++|+|.++|.++...+
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEeccccc
Confidence 455667776666788898887 899999999999999999999998521 1243 5899998887653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
... +...+.++++++.
T Consensus 77 ~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 77 VQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 000 0000001110000
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 154 rv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 205 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPAS---ALDPISTAKVEELIHELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 01179999999 999999999999999986533 99999986
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-14 Score=147.43 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=103.2
Q ss_pred hcCceeEEEecCCcc---chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 134 TWGYEPLFCSVESKL---GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 134 ~~~~~~~~~s~~~~~---~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+.++.+.++|...+ .++++++.+ +|+++++||+||+||||++++|.+ +|+|++|+|.++|.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R------------fydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR------------FYDPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCceEEEcCccc
Confidence 345788999998764 577788877 899999999999999999999998 7899999999999999
Q ss_pred cccccccCCCCceeeeEEEEecCCCc------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------ 235 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------ 235 (276)
.++..+. .+..++++.|++-.
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 8876554 66688888887522
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. .||..+...+.+.+....+-- .|+++|.|.
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTS---aLD~~se~~Vq~ALd~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATS---ALDAESERVVQEALDKASKGRTTIVVAHRLS 549 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCccc---ccCHHHHHHHHHHHHHhhcCCeEEEEeeehh
Confidence 79999999 999999888888887765532 899999873
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-14 Score=153.19 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=102.8
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCC------------------------
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHAS------------------------ 186 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~------------------------ 186 (276)
+.++.+.++|.+ .+.++++++.+ +|++++|||+||+|||||+++|.|.....
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 456788899963 35799999998 89999999999999999999999944210
Q ss_pred ------------------ccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc-------------
Q 023887 187 ------------------DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG------------- 235 (276)
Q Consensus 187 ------------------~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~------------- 235 (276)
.+...+.-..|++|+|.++|.++.+++... .++.+++++|++-+
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccccccHHHHHhcCC
Confidence 000011111237999999999998877543 67788888887532
Q ss_pred -----------------------------------------------------------EEEecCCCCCCCCChhhHHHH
Q 023887 236 -----------------------------------------------------------YLADTPGFNQPSLLKVTKQSL 256 (276)
Q Consensus 236 -----------------------------------------------------------~iiDtPg~~~~~l~~~~~~~l 256 (276)
+|+|||+. +||..+.+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS---aLD~~sE~~I 1397 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS---SLDSNSEKLI 1397 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc---ccCHHHHHHH
Confidence 79999999 9999999999
Q ss_pred HHHHHHHhh-cc--eEEEeeeC
Q 023887 257 AQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 257 ~~~f~ei~~-~~--ii~~~H~~ 275 (276)
.+.+.++.. .+ +|+++|.+
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechH
Confidence 999999852 34 99999975
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=124.58 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=88.4
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|++
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~------------~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS------------ELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcccCCccceEEEECCEe
Confidence 34567777887667889999888 89999999999999999999999965 43 58999998876
Q ss_pred ccccccccCCCCceeeeEEEEecC--------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLS-------------------------------------------------------- 232 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~-------------------------------------------------------- 232 (276)
+...+... +.....++++++.
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 53200000 0000001111100
Q ss_pred ----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 ----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 ----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 210 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCS---ALDPIATMKVEELIHSLRSELTIAIVTHNMQ 210 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 01179999999 999999999999999987543 999999863
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=124.76 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=51.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~ 209 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ++ |++|+|.++|..+
T Consensus 18 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 18 EVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL---------YPGNHYEGEIILHPDNV 85 (265)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---------CCCCCcccEEEEcCccc
Confidence 3567777887667899999988 8999999999999999999999997510 01 2788888877543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=123.84 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=52.0
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|.++|++
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN------------ELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc------------CCCCCccccceEEECCEE
Confidence 34566777787667889999888 89999999999999999999999966 553 7888888765
Q ss_pred c
Q 023887 209 V 209 (276)
Q Consensus 209 ~ 209 (276)
+
T Consensus 76 i 76 (261)
T PRK14258 76 I 76 (261)
T ss_pred h
Confidence 4
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-13 Score=125.38 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=86.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|..... ...|.+|+|.++|+++......
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI-------PGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------cCCCcCceEEECCEecccccch
Confidence 456677776666788999888 89999999999999999999999965100 0013689999888665210000
Q ss_pred cCCCCceeeeEEEEec----------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPL---------------------------------------------------------------- 231 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~---------------------------------------------------------------- 231 (276)
. ......++++++
T Consensus 96 ~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 S---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred h---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 0 000000011000
Q ss_pred ------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 173 AraL~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCS---ALDPISTRQVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHHhhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 999999999999999997533 99999986
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=7e-14 Score=137.15 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=80.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccc-------------c
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGE-------------V 212 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~-------------v 212 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|+++.. +
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY------------PGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 4688888887 89999999999999999999999965 64 89999998865421 0
Q ss_pred cccc---CCCCcee-----------------------------eeEEEEecC----------------------------
Q 023887 213 STKS---GRGKHTT-----------------------------RHVSLLPLS---------------------------- 232 (276)
Q Consensus 213 s~~~---g~gk~tt-----------------------------~~~~~~~~~---------------------------- 232 (276)
.... +.-...| .....+.+.
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 0000 0000000 000000000
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 422 p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 422 PRVLILDEPTR---GVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred CCEEEEcCCCC---CcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 01179999999 999999999999999998776 999999963
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=127.97 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=89.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|.++|.++..
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~-------~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI-------EGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------CCCCCceEEEECCEEccc
Confidence 345677777743 35789999988 89999999999999999999999965100 002679999999987642
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
..... ...++.++++++.+
T Consensus 154 ~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 154 KKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccch---HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 10000 00011122221110
Q ss_pred --------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 234 --------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 234 --------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
..+|+|+|.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts---~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~ 285 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTS---ALDPIATAKIEELILELKKKYSIIIVTHSMA 285 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 0179999999 999999999999999987644 999999863
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=125.35 Aligned_cols=106 Identities=29% Similarity=0.380 Sum_probs=76.7
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
..+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+...+... ..+..+++ .++.+|+.++.+
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~~~---~~~~~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEADA---AALWSLGLGEPHPVSALHGRG 186 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccchhh---HHHHhcCCCCeEEEEcCCCCC
Confidence 467899999999999765322 22333333 45789999999999996432111 22334565 467899999998
Q ss_pred hHHHHhhc-----c----------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l-----~----------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++++...+ + ..+++++|.+|||||||+|.|++..
T Consensus 187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 88876543 1 1479999999999999999999854
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=136.02 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=88.1
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL------------PSPPVVYPSGDIRFHG 75 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCcCCccceEEEECC
Confidence 3456677753 35789999988 89999999999999999999999976 44 799999988
Q ss_pred ccccccccccCCCCceeeeEEEEecC------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS------------------------------------------------------ 232 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~------------------------------------------------------ 232 (276)
.++...+...- .+...+.+++++|.
T Consensus 76 ~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 76 ESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred EecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 76533211000 00000011111111
Q ss_pred --------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 233 --------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 233 --------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+..+++|||+. +||....+.+.+.+.++.++ + +|++||+++
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTT---ALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---ccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 01179999999 99999999999999999764 5 899999963
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=133.72 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=93.2
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|||.||||||||.++|+|.. +|++|+|.++|.+ ..++ .+..+...+.+
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~------------~P~~G~i~~~g~~-~~~~--~~~~~~~r~~~ 369 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL------------PPSSGSIIFDGQD-LDLT--GGELRRLRRRI 369 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEEeCcc-cccc--cchhhhhhhhe
Confidence 3477888887 89999999999999999999999966 9999999999988 3333 23334466788
Q ss_pred EEEecCCCc-----------------------------------------------------------------------
Q 023887 227 SLLPLSGGG----------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~~----------------------------------------------------------------------- 235 (276)
++++|++..
T Consensus 370 QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~ 449 (539)
T COG1123 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPK 449 (539)
T ss_pred EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCC
Confidence 999987532
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. .||...+..+.+++.++.+. | .+++|||+.
T Consensus 450 lli~DEp~S---aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 450 LLILDEPVS---ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred EEEecCCcc---ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 69999999 99999999999999999975 6 899999973
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=118.58 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=73.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc-------ccccccCCCCc--eee--eE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG-------EVSTKSGRGKH--TTR--HV 226 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~-------~vs~~~g~gk~--tt~--~~ 226 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++. -+...+....+ .|. .+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI------------PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHH
Confidence 79999999999999999999999965 899999999997542 11111110000 000 00
Q ss_pred --------EEEecC---------------------------------------------CCcEEEecCCCCCCCCChhhH
Q 023887 227 --------SLLPLS---------------------------------------------GGGYLADTPGFNQPSLLKVTK 253 (276)
Q Consensus 227 --------~~~~~~---------------------------------------------~~~~iiDtPg~~~~~l~~~~~ 253 (276)
...... +..+++|||.. ++|..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~---~LD~~~~ 149 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFT---GLDMPTQ 149 (223)
T ss_pred HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHH
Confidence 000000 00079999999 9999999
Q ss_pred HHHHHHHHHHhhcc--eEEEeeeC
Q 023887 254 QSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 254 ~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+.+.+.+.++.+.+ +|++||++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999998765 99999986
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=135.65 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=80.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-ccccceeecccccccc-------------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGEV------------- 212 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~~~~v------------- 212 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|+++...
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY------------PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 4688888887 89999999999999999999999965 6 5899999988654211
Q ss_pred cccc---CCCCcee--eeE---------------------------EEEecC----------------------------
Q 023887 213 STKS---GRGKHTT--RHV---------------------------SLLPLS---------------------------- 232 (276)
Q Consensus 213 s~~~---g~gk~tt--~~~---------------------------~~~~~~---------------------------- 232 (276)
.... +.-...| ..+ ..+.+.
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 1000 0000000 000 000000
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 424 p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~ 466 (506)
T PRK13549 424 PKILILDEPTR---GIDVGAKYEIYKLINQLVQQGVAIIVISSELP 466 (506)
T ss_pred CCEEEEcCCCC---CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 01179999999 999999999999999998776 999999963
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=133.78 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=99.0
Q ss_pred eeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|... ..++++++.+ +|++++|+|.|||||||+.++|+|.... -....+|+|.++|+++..+
T Consensus 9 ~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~--------~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 9 ENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE--------GGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC--------CCcccceEEEECCcchhcC
Confidence 4455555433 3689999998 9999999999999999999999998720 0123589999999988777
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... +.+-.-+.+++++|++-.
T Consensus 81 ~~~~-~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 81 SERE-MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CHHH-HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 6532 233344778888887421
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+- .||...+.++.+++.++.++ | +|++|||+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTT---aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTT---ALDVTTQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcc---ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 69999999 99999999999999999964 5 99999997
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=134.28 Aligned_cols=122 Identities=21% Similarity=0.221 Sum_probs=83.5
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccc------
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGE------ 211 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~------ 211 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++..
T Consensus 266 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~------------~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 266 GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH------------PQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred eEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CcccCCeEEEecccCCCCCCHHH
Confidence 455666556788898887 89999999999999999999999954 44 68888887754311
Q ss_pred -------cccccCCCC-c-ee-e------------------------------eEEEEe-c-C-----------------
Q 023887 212 -------VSTKSGRGK-H-TT-R------------------------------HVSLLP-L-S----------------- 232 (276)
Q Consensus 212 -------vs~~~g~gk-~-tt-~------------------------------~~~~~~-~-~----------------- 232 (276)
+........ . ++ . ...+-. . .
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 000000000 0 00 0 000000 0 0
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeCC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHMLH 276 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~~ 276 (276)
+..+++|||+. ++|....+.+.+.+.++.+.+ +|++|||++
T Consensus 414 ~al~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 414 RALVKHPTLLILDEPLQ---GLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred HHHhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 01179999999 999999999999999998753 899999974
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-13 Score=133.49 Aligned_cols=59 Identities=27% Similarity=0.382 Sum_probs=49.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
++.+.++|.+...++++++.+ +|++++|+|+||||||||+++|+|.. -++|++|+|.++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~----------~~~p~~G~i~~~ 62 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD----------QYEPTSGRIIYH 62 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc----------cCCCCceEEEEe
Confidence 345677787667899999988 89999999999999999999999953 126899999886
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-13 Score=134.75 Aligned_cols=112 Identities=15% Similarity=0.232 Sum_probs=80.2
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-------------ccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-------------VST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-------------vs~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.. +..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD------------KRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 577888777 89999999999999999999999965 8999999998865421 111
Q ss_pred c---cCCCCcee--eeEEE-------------------------------EecC--------------------------
Q 023887 215 K---SGRGKHTT--RHVSL-------------------------------LPLS-------------------------- 232 (276)
Q Consensus 215 ~---~g~gk~tt--~~~~~-------------------------------~~~~-------------------------- 232 (276)
. .+.-...| ..+.+ +.+.
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 0 00000000 00000 0000
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 426 ~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 426 CCPEVIIFDEPTR---GIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred cCCCEEEECCCCC---CcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 00179999999 999999999999999998766 99999996
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-13 Score=147.78 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=101.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|+|+||+|||||+++|.|. |+ .+|+|.++|.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl------------~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL------------LS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh------------cC-CCcEEEECCEEccc
Confidence 446778888864 56899999998 8999999999999999999999994 46 78999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-.
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 77544 66788888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+...+.+.+.+..+.. +|+++|.++
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS---~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSA---HLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999 999999999999988876544 999999763
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-13 Score=132.90 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=80.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. |++|+|+++|.++...+...- ......+
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-------------~~~G~i~~~g~~i~~~~~~~~--~~~~~~i 364 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-------------NSQGEIWFDGQPLHNLNRRQL--LPVRHRI 364 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-------------CCCcEEEECCEEccccchhhH--HHhhhce
Confidence 4688899888 89999999999999999999999954 478999998865532211000 0000111
Q ss_pred EEEecCC-------------------------------------------------------------------------
Q 023887 227 SLLPLSG------------------------------------------------------------------------- 233 (276)
Q Consensus 227 ~~~~~~~------------------------------------------------------------------------- 233 (276)
++++|..
T Consensus 365 ~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 444 (529)
T PRK15134 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP 444 (529)
T ss_pred EEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC
Confidence 1111110
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.+. + +|++|||++
T Consensus 445 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 445 SLIILDEPTS---SLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred CEEEeeCCcc---ccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 0179999999 99999999999999999864 5 999999863
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-13 Score=118.87 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=73.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eE---------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HV--------- 226 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~--------- 226 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.++|..++-+......-...|. .+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~------------~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 91 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL------------KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYT 91 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccc
Confidence 68999999999999999999999965 89999999988655443322110000000 00
Q ss_pred ---------EEEec---------------------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--
Q 023887 227 ---------SLLPL---------------------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G-- 267 (276)
Q Consensus 227 ---------~~~~~---------------------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~-- 267 (276)
..+.+ .+..+++|||.. ++|......+.+.+.++.+. +
T Consensus 92 ~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 92 HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA---YLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCE
Confidence 00000 001189999999 99999999999999999763 4
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
++++||++
T Consensus 169 iiivsHd~ 176 (246)
T cd03237 169 AFVVEHDI 176 (246)
T ss_pred EEEEeCCH
Confidence 99999986
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=149.65 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=94.4
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|+. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..-.
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll------------~ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT------------TVTSGDATVAGKSILTNI 2007 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECcchH
Confidence 4567778865 45899999988 89999999999999999999999976 899999999998764210
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.+++++|....
T Consensus 2008 ~------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2008 S------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred H------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 0 012234444443211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|+..++.+.+.+.++.+.| +|++||+++
T Consensus 2082 A~ALi~~P~VLLLDEPTs---GLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTT---GMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred HHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 999999999999999998766 999999863
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-13 Score=120.92 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=77.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS------------TK 215 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs------------~~ 215 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. ++ +|+|.++|.++...+ ..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~------------~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL------------PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CC-CeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 467777777 89999999999999999999999954 43 788888876542210 00
Q ss_pred cCC--------------CCce----------------------eeeEEE--------------Eec-------CCCcEEE
Q 023887 216 SGR--------------GKHT----------------------TRHVSL--------------LPL-------SGGGYLA 238 (276)
Q Consensus 216 ~g~--------------gk~t----------------------t~~~~~--------------~~~-------~~~~~ii 238 (276)
+.. .... .+.... +.. .+..+++
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 000 0000 000000 001 2256789
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 158 DEPt~---~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 158 DEPMN---SLDVAQQAALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred cCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 99999 999999999999999998665 99999986
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-13 Score=117.14 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=85.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
+...++++++.+ +|+.+++.||||+|||||+++++... .|++|++++.|++++...+.. .+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li------------sp~~G~l~f~Ge~vs~~~pea-----~Rq 77 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDVSTLKPEA-----YRQ 77 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc------------CCCCceEEEcCccccccChHH-----HHH
Confidence 345678888887 89999999999999999999999866 899999999999988754322 233
Q ss_pred eEEEEecCC------------------------------------------------------------------CcEEE
Q 023887 225 HVSLLPLSG------------------------------------------------------------------GGYLA 238 (276)
Q Consensus 225 ~~~~~~~~~------------------------------------------------------------------~~~ii 238 (276)
.++|+.|.+ ..+++
T Consensus 78 ~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred HHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEe
Confidence 333333322 11799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~ 275 (276)
|||+. .||.-.++.+.+.+.... ++. ++-+|||-
T Consensus 158 DE~Ts---ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 158 DEITS---ALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred cCchh---hcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 99999 999888898888766665 554 89999984
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-13 Score=131.96 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc-------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-------------ST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-------------s~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++... +.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~------------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q 334 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL------------PRTSGYVTLDGHEVVTRSPQDGLANGIVYISE 334 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCHHHHHHCCCEEecC
Confidence 467777777 89999999999999999999999965 89999999998654221 11
Q ss_pred cc---CCCCcee--eeE----------------------------EEEecC----------------------------C
Q 023887 215 KS---GRGKHTT--RHV----------------------------SLLPLS----------------------------G 233 (276)
Q Consensus 215 ~~---g~gk~tt--~~~----------------------------~~~~~~----------------------------~ 233 (276)
.+ ..-.+.| ..+ ..+.+. +
T Consensus 335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 10 0000000 000 000010 0
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.++| +|++|||++
T Consensus 415 ~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 415 KVLILDEPTR---GVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred CEEEEcCCCC---CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 1179999999 999999999999999998766 999999863
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=123.54 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=52.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~-------~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDR-------IKAARIDGSVELDGQDI 114 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-------cCCCCCceEEEECCEEc
Confidence 456777777767889999888 8999999999999999999999996510 00026899999988654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-13 Score=134.71 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=82.6
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccccc-
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS- 216 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~~~- 216 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++ ..++-++...
T Consensus 318 l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~igy~~Q~~~ 385 (638)
T PRK10636 318 VSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL------------APVSGEIGLAKGIKLGYFAQHQL 385 (638)
T ss_pred eEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCCEEEEEecCcch
Confidence 455666556788888887 89999999999999999999999966 89999998753 2333222110
Q ss_pred -CCCCcee------------------eeEEEEec----------------------------CCCcEEEecCCCCCCCCC
Q 023887 217 -GRGKHTT------------------RHVSLLPL----------------------------SGGGYLADTPGFNQPSLL 249 (276)
Q Consensus 217 -g~gk~tt------------------~~~~~~~~----------------------------~~~~~iiDtPg~~~~~l~ 249 (276)
......+ .....+.+ .+..+|+|+|+. +||
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~---~LD 462 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN---HLD 462 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC---CCC
Confidence 0000000 00000000 011189999999 999
Q ss_pred hhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 250 KVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+.+.+.+.+.++ .+ +|++|||+
T Consensus 463 ~~~~~~l~~~L~~~--~gtvi~vSHd~ 487 (638)
T PRK10636 463 LDMRQALTEALIDF--EGALVVVSHDR 487 (638)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEeCCH
Confidence 99999999999988 35 99999986
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-13 Score=132.94 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=81.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc------------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST------------ 214 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~------------ 214 (276)
..++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~ 329 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR------------EKSAGTITLHGKKINNHNANEAINHGFALVT 329 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC------------cCCccEEEECCEECCCCCHHHHHHCCCEEcC
Confidence 3577777777 89999999999999999999999976 8999999999866532110
Q ss_pred -cc---CCCCcee------ee-E-----------------------EEEec----------------------------C
Q 023887 215 -KS---GRGKHTT------RH-V-----------------------SLLPL----------------------------S 232 (276)
Q Consensus 215 -~~---g~gk~tt------~~-~-----------------------~~~~~----------------------------~ 232 (276)
.. +.-...+ .. + ..+.+ +
T Consensus 330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 409 (491)
T PRK10982 330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQ 409 (491)
T ss_pred CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcC
Confidence 00 0000000 00 0 00000 0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+++ +|++|||++
T Consensus 410 p~illLDEPt~---gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 410 PEILMLDEPTR---GIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred CCEEEEcCCCc---ccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 11289999999 999999999999999998776 999999963
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-13 Score=135.56 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=84.4
Q ss_pred EEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccc------
Q 023887 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGE------ 211 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~------ 211 (276)
..+|.+...+++++..+ +|++++|+|+||+|||||+|+|+|.. +| .+|+|.++|+++..
T Consensus 75 ~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~------------~~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI------------QGNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred cccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEEEECCEECchhhccce
Confidence 34555566788888887 89999999999999999999999965 55 38999998875421
Q ss_pred --cccccCCC------------------Ccee------------eeEEEEe-------------cC--------------
Q 023887 212 --VSTKSGRG------------------KHTT------------RHVSLLP-------------LS-------------- 232 (276)
Q Consensus 212 --vs~~~g~g------------------k~tt------------~~~~~~~-------------~~-------------- 232 (276)
+...+..- +..+ ...++-. ++
T Consensus 143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred EEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 00000000 0000 0000000 00
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|..+...+.+.+.++.+.| +|+++|+++
T Consensus 223 ~~P~iLlLDEPts---gLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 223 INPSLLILDEPTS---GLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred hCCCEEEEeCCCC---CcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 11279999999 999999999999999998766 999999863
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-13 Score=133.27 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc-------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-------------ST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-------------s~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++... ..
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~------------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 335 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT------------RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPE 335 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC------------cCCCceEEECCEECCCCCHHHHHhCCCEEcCc
Confidence 567777777 89999999999999999999999966 89999999988654210 00
Q ss_pred cc---CCCC-cee-eeEE----------------------------EEecC----------------------------C
Q 023887 215 KS---GRGK-HTT-RHVS----------------------------LLPLS----------------------------G 233 (276)
Q Consensus 215 ~~---g~gk-~tt-~~~~----------------------------~~~~~----------------------------~ 233 (276)
.. +.-. .+. ..+. .+.+. +
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 00 0000 000 0000 00000 0
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.++| +|++|||++
T Consensus 416 ~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 416 KVILLDEPTR---GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred CEEEEcCCCC---CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 1179999999 999999999999999998876 999999963
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=123.64 Aligned_cols=114 Identities=25% Similarity=0.311 Sum_probs=85.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-----------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK----------- 215 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~----------- 215 (276)
..++++++.+ +|+++++||.||+|||||-++|+|.. +|++|+|+++|+++..++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~------------~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~ 94 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE------------EPTSGEILFEGKDITKLSKEERRERVLELLE 94 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc------------CCCCceEEEcCcchhhcchhHHHHHHHHHHH
Confidence 4678888888 89999999999999999999999965 99999999999876443311
Q ss_pred -cCCCC-ceeeeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 216 -SGRGK-HTTRHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 216 -~g~gk-~tt~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.|..+ +..+..- .+.+.+..+++|+|.. .+|--.+.++..++.++.+. | .+++|||+.
T Consensus 95 ~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS---aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS---ALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh---hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 11100 0111100 1112234489999999 88877788999999999975 5 899999974
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-13 Score=134.69 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=91.6
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|++.++|+++..
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD------------KPTSGTYRVAGQDVAT 74 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcCc
Confidence 4566777753 24788888887 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.....- .....+.+++++++...
T Consensus 75 ~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv 153 (648)
T PRK10535 75 LDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRV 153 (648)
T ss_pred CCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHH
Confidence 321100 00001223333322110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++++.+ ++++||++
T Consensus 154 ~LAraL~~~P~lLllDEP~~---gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 154 SIARALMNGGQVILADEPTG---ALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred HHHHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 999999999999999998765 99999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-13 Score=130.83 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=83.0
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-++...
T Consensus 324 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~~~q~~ 391 (530)
T PRK15064 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL------------EPDSGTVKWSENANIGYYAQDH 391 (530)
T ss_pred eeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEcccc
Confidence 3556676666788888888 89999999999999999999999965 899999988763 222222111
Q ss_pred C--CCCcee--ee-----------------EEEEec----------------------------CCCcEEEecCCCCCCC
Q 023887 217 G--RGKHTT--RH-----------------VSLLPL----------------------------SGGGYLADTPGFNQPS 247 (276)
Q Consensus 217 g--~gk~tt--~~-----------------~~~~~~----------------------------~~~~~iiDtPg~~~~~ 247 (276)
. .-.+.| .. ...+-+ .+..+|+|||.. +
T Consensus 392 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~---~ 468 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN---H 468 (530)
T ss_pred cccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---C
Confidence 0 000000 00 000000 001189999999 9
Q ss_pred CChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 248 LLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 248 l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|....+.+.+.+.++. ..+|++|||+
T Consensus 469 LD~~~~~~l~~~l~~~~-~tvi~vsHd~ 495 (530)
T PRK15064 469 MDMESIESLNMALEKYE-GTLIFVSHDR 495 (530)
T ss_pred CCHHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 99999999999988872 2399999986
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-13 Score=122.25 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=81.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-----cccccC--CC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-----VSTKSG--RG 219 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-----vs~~~g--~g 219 (276)
..++++++.+ +|++++++|+||+||||+|++|.|.. .|++|++.++|..-.. +. +.+ +|
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll------------~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~g 104 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL------------LPTSGKVRVNGKDPFRRREEYLR-SIGLVMG 104 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc------------ccCCCeEEecCcCcchhHHHHHH-HHHHHhh
Confidence 3678888888 89999999999999999999999977 8999999998865332 00 000 00
Q ss_pred Cceeee-------------------------------------------EEEEe--------------cCCCcEEEecCC
Q 023887 220 KHTTRH-------------------------------------------VSLLP--------------LSGGGYLADTPG 242 (276)
Q Consensus 220 k~tt~~-------------------------------------------~~~~~--------------~~~~~~iiDtPg 242 (276)
..+... +.-++ -.+..+++|||+
T Consensus 105 qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 105 QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 000000 00000 011227999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+ +||-..+..+++.+++..+. + |+++||+++
T Consensus 185 v---gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 185 V---GLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred c---CcchhHHHHHHHHHHHHHHhhCceEEEEecchh
Confidence 9 99998999999999999874 4 999999974
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-13 Score=130.60 Aligned_cols=121 Identities=22% Similarity=0.338 Sum_probs=100.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|+.++++|.. .+.++++++.+ +|+++++||+||+||||+|++|.+ +|+.++|.|.+||+++..+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR------------ffdv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR------------FFDVNSGSITIDGQDIRNV 605 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH------------HhhccCceEEEcCchHHHH
Confidence 346778888864 56799999987 999999999999999999999998 8899999999999999887
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
...+ .+.+++.+||+.-.
T Consensus 606 t~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 606 TQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 6443 66777888776311
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++||.+. .+|--+.+.+.+.+..+++.- .|+++|.+
T Consensus 681 QRVAiARtiLK~P~iIlLDEATS---ALDT~tER~IQaaL~rlca~RTtIVvAHRL 733 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATS---ALDTNTERAIQAALARLCANRTTIVVAHRL 733 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhh---hcCCccHHHHHHHHHHHhcCCceEEEeeee
Confidence 58899988 888878889999999998754 78888875
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-13 Score=116.09 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=98.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+...|+..+.++.++... +|..+.|+|.||+||||+++++.-.. .|+.|.|+++|..+.-...+
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE------------~P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc------------CCCCceEEECCeEEEeeeCC
Confidence 344556777777888888765 89999999999999999999998765 89999999999887664443
Q ss_pred cCCCC--------ceeeeEEEEecCCCc----------------------------------------------------
Q 023887 216 SGRGK--------HTTRHVSLLPLSGGG---------------------------------------------------- 235 (276)
Q Consensus 216 ~g~gk--------~tt~~~~~~~~~~~~---------------------------------------------------- 235 (276)
.|.-+ ..++..+|++|.+++
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 33211 122345566665544
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|+|+. .+|+.-..++.+.+.++.++| ++++||.|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTS---ALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTS---ALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcc---cCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 69999999 999998999999999999998 89999987
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-13 Score=132.57 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=79.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-------------ccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-------------VST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-------------vs~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.. +..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 345 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR------------PARGGRIMLNGKEINALSTAQRLARGLVYLPE 345 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence 467777776 89999999999999999999999966 8999999998865422 111
Q ss_pred cc---CCCCceee--e-------------------------EEEEecC----------------------------CCcE
Q 023887 215 KS---GRGKHTTR--H-------------------------VSLLPLS----------------------------GGGY 236 (276)
Q Consensus 215 ~~---g~gk~tt~--~-------------------------~~~~~~~----------------------------~~~~ 236 (276)
.. +.-...+. . ...+-+. +..+
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 00 00000000 0 0000000 0117
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|+|||+. ++|....+.+.+.+.++.+++ +|++|||++
T Consensus 426 lLDEPt~---gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 426 IVDEPTR---GVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred EECCCCc---CcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 9999999 999999999999999998766 999999963
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=126.18 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=77.2
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
..+.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+...... ...+..+++ .++.+|+.++.+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 357899999999999753222 22344444 5679999999999998654221 123344565 467899999999
Q ss_pred hHHHHhhc-----c------------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRL-----R------------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l-----~------------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|...+ + -.+++++|.+|||||||+|.|.+..
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 88876543 1 1479999999999999999999854
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-13 Score=131.24 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=46.5
Q ss_pred eeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 138 EPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 138 ~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
+.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 283 ~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 344 (520)
T TIGR03269 283 RNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL------------EPTSGEVNVR 344 (520)
T ss_pred eccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEe
Confidence 345666632 34688888887 89999999999999999999999966 8899999885
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-13 Score=119.38 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=93.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.+.++++..+++|+-.+ +|+..+|+|+||+|||||++++.+.. .|++|.+.+.|.+.+...-
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~------------~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH------------PPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred EecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc------------CCCCCceeeeeeeccCCcc
Confidence 4567889999999999999887 89999999999999999999999976 8899999888876654321
Q ss_pred ccCCCCceeeeEEE-----------------------------EecC---------------------------------
Q 023887 215 KSGRGKHTTRHVSL-----------------------------LPLS--------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~-----------------------------~~~~--------------------------------- 232 (276)
... .++.+++ +...
T Consensus 101 ~~e----lrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge 176 (257)
T COG1119 101 IFE----LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGE 176 (257)
T ss_pred hHH----HHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhH
Confidence 000 1111111 1100
Q ss_pred -------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c--eEEEeeeC
Q 023887 233 -------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G--LLYMIHML 275 (276)
Q Consensus 233 -------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~--ii~~~H~~ 275 (276)
+..+|+|||.- ++|....+.+.+.|.++... + ++++||..
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~---GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQ---GLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccc---cCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 00079999999 99999999999999999975 3 99999974
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-13 Score=135.06 Aligned_cols=125 Identities=21% Similarity=0.186 Sum_probs=88.5
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|..+..
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll------------~p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL------------EQAGGLVQCDKMLLRR 82 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCeEEEECCEEecc
Confidence 4556677752 24788999988 89999999999999999999999965 8899999887753210
Q ss_pred -------cccccCCC--CceeeeEEEEecCC-------------------------------------------------
Q 023887 212 -------VSTKSGRG--KHTTRHVSLLPLSG------------------------------------------------- 233 (276)
Q Consensus 212 -------vs~~~g~g--k~tt~~~~~~~~~~------------------------------------------------- 233 (276)
+....... +.....+++++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHH
Confidence 00000000 00001233333321
Q ss_pred -------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 -------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 -------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||+. +||....+++.+++.++.+. | +|++|||++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~---~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTT---ALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 0079999999 99999999999999999854 5 999999963
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-13 Score=133.94 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=83.9
Q ss_pred EEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-----------ecc
Q 023887 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (276)
Q Consensus 140 ~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (276)
+..+|+.. ..+.++. .+ +|++++|+|+||+|||||+++|+|.. +|++|+|. ++|
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l------------~p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL------------IPNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCccccCCCcHHHHHHHhCC
Confidence 44556543 4677777 45 89999999999999999999999966 89999997 888
Q ss_pred ccccccccccCCC-CceeeeEEEEec------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRG-KHTTRHVSLLPL------------------------------------------------------ 231 (276)
Q Consensus 207 ~~~~~vs~~~g~g-k~tt~~~~~~~~------------------------------------------------------ 231 (276)
.++.........+ .......+++.+
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA 225 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 7654321100000 000000111110
Q ss_pred ----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 ----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 ----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+++|||.. +||......+.+.+.++.+ + +|++||+++
T Consensus 226 al~~~p~lllLDEPts---~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 226 ALLRDADFYFFDEPTS---YLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred HHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 011189999999 9999999999999999987 6 999999863
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-12 Score=119.06 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=77.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee----
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT---- 223 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt---- 223 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|... ......+.....|
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~~-~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL------------SPTVGKVDRNGEVS-VIAISAGLSGQLTGIEN 105 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEe-EEecccCCCCCCcHHHH
Confidence 567777777 89999999999999999999999965 89999998887421 0000000000000
Q ss_pred ---------------------------------eeEEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHH
Q 023887 224 ---------------------------------RHVSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSL 256 (276)
Q Consensus 224 ---------------------------------~~~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l 256 (276)
+....++ .++..+++|+|.. ++|....+.+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~---gLD~~~~~~l 182 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS---VGDQTFAQKC 182 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc---cCCHHHHHHH
Confidence 0000000 0011289999999 9999899999
Q ss_pred HHHHHHHhhcc--eEEEeeeC
Q 023887 257 AQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 257 ~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+.+.++.+.+ +|++||++
T Consensus 183 ~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 183 LDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHHHHHHCCCEEEEEcCCH
Confidence 99999997665 89999985
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=132.52 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=81.7
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++.. .++-+....
T Consensus 324 ~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 324 NVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL------------QADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred eeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCCcEEEEEeCcc
Confidence 3556676666788888887 89999999999999999999999965 899999987421 222222110
Q ss_pred -CCCCcee--ee--------------------EEEEec----------------------------CCCcEEEecCCCCC
Q 023887 217 -GRGKHTT--RH--------------------VSLLPL----------------------------SGGGYLADTPGFNQ 245 (276)
Q Consensus 217 -g~gk~tt--~~--------------------~~~~~~----------------------------~~~~~iiDtPg~~~ 245 (276)
..-.+.| .. ...+.+ .+..+|+|+|+.
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~-- 469 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN-- 469 (635)
T ss_pred cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC--
Confidence 0000000 00 000000 001189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++|..+.+.+.+.+.++ .+ +|++|||+
T Consensus 470 -~LD~~~~~~l~~~l~~~--~~tvi~vSHd~ 497 (635)
T PRK11147 470 -DLDVETLELLEELLDSY--QGTVLLVSHDR 497 (635)
T ss_pred -CCCHHHHHHHHHHHHhC--CCeEEEEECCH
Confidence 99999998888888876 24 99999986
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-13 Score=134.17 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=86.0
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.+.+++++... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.... +
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl------------~P~sGeI~I~G~~~~-i 90 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT------------MPNKGTVDIKGSAAL-I 90 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeee-E
Confidence 34556666553 4688888887 89999999999999999999999966 899999999885421 0
Q ss_pred ccccCCCCcee-------------------------------------eeEEEEe--------------cCCCcEEEecC
Q 023887 213 STKSGRGKHTT-------------------------------------RHVSLLP--------------LSGGGYLADTP 241 (276)
Q Consensus 213 s~~~g~gk~tt-------------------------------------~~~~~~~--------------~~~~~~iiDtP 241 (276)
....+.....| +.+..++ ..+..+|+|||
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP 170 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 00000000000 0000000 00112899999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 242 GFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 242 g~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 171 Ts---gLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 171 LS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred cc---cCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 99 999999999999999997765 99999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-13 Score=146.22 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=92.8
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|. +...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|+++|.++..-.
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl------------~PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL------------PPTSGTVLVGGKDIETNL 998 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC------------CCCceEEEECCEECcchH
Confidence 455677774 356789999888 89999999999999999999999966 899999999998764211
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ..++.+++++|....
T Consensus 999 ~------~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 999 D------AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred H------HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 0 012345555543211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++++ | +|++||+++
T Consensus 1073 ArALi~~PkVLLLDEPTS---GLDp~sr~~l~~lL~~l~~-g~TIIltTHdmd 1121 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTS---GVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMD 1121 (2272)
T ss_pred HHHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 79999999 9999999999999999964 5 999999873
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=129.71 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=82.9
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++...
T Consensus 327 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 327 NLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE------------QPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred eEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEECCceEEEEEeCCc
Confidence 3455666666888898887 89999999999999999999999966 889999887542 122221110
Q ss_pred C-CCCcee----------------------eeEEEEecC----------------------------CCcEEEecCCCCC
Q 023887 217 G-RGKHTT----------------------RHVSLLPLS----------------------------GGGYLADTPGFNQ 245 (276)
Q Consensus 217 g-~gk~tt----------------------~~~~~~~~~----------------------------~~~~iiDtPg~~~ 245 (276)
. .-...| .....+.+. +..+|+|||+.
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~-- 472 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN-- 472 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--
Confidence 0 000000 000000010 01189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++|....+.+.+.+.++.. .+|++|||+
T Consensus 473 -~LD~~~~~~l~~~l~~~~~-~viivsHd~ 500 (552)
T TIGR03719 473 -DLDVETLRALEEALLEFAG-CAVVISHDR 500 (552)
T ss_pred -CCCHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 9999999999999998842 399999986
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=129.79 Aligned_cols=121 Identities=23% Similarity=0.271 Sum_probs=83.1
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++...
T Consensus 329 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 329 NLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE------------QPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred eEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEeCch
Confidence 3455666666789999888 89999999999999999999999966 899999988542 222222110
Q ss_pred -CCCCcee-------------------------eeEEEEe---------c----------------CCCcEEEecCCCCC
Q 023887 217 -GRGKHTT-------------------------RHVSLLP---------L----------------SGGGYLADTPGFNQ 245 (276)
Q Consensus 217 -g~gk~tt-------------------------~~~~~~~---------~----------------~~~~~iiDtPg~~~ 245 (276)
..-...| ....+-. + .+..+|+|||..
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~-- 474 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN-- 474 (556)
T ss_pred hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC--
Confidence 0000000 0000000 0 011189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++|....+.+.+.+.++.. .+|++|||+
T Consensus 475 -~LD~~~~~~l~~~l~~~~~-tvi~vtHd~ 502 (556)
T PRK11819 475 -DLDVETLRALEEALLEFPG-CAVVISHDR 502 (556)
T ss_pred -CCCHHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 9999999999999998742 399999986
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-13 Score=119.12 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=85.7
Q ss_pred hccC-CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 156 RLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 156 ~l~g-~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
.+++ .++++.|+||+|||||||++.|.. .|++|.|.++|.-+...+.....-. ..+.++|++|+-+
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~------------rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVFQDAR 86 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGLT------------RPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQDAR 86 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhccC------------CccccEEEECCEEeecccCCcccCh-hhheeeeEeeccc
Confidence 3466 789999999999999999999977 8999999999987766543322222 3467899998743
Q ss_pred c--------------------------------------------------------------EEEecCCCCCCCCChhh
Q 023887 235 G--------------------------------------------------------------YLADTPGFNQPSLLKVT 252 (276)
Q Consensus 235 ~--------------------------------------------------------------~iiDtPg~~~~~l~~~~ 252 (276)
+ +++|||.. ++|...
T Consensus 87 LFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa---SLD~~R 163 (352)
T COG4148 87 LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA---SLDLPR 163 (352)
T ss_pred cccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh---hcccch
Confidence 3 69999999 999989
Q ss_pred HHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 253 KQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 253 ~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.++.-+++.++++ . |+++||.+
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~ 189 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSL 189 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCH
Confidence 99999999999986 4 99999975
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-13 Score=112.82 Aligned_cols=109 Identities=22% Similarity=0.232 Sum_probs=73.3
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc-------c-----ccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG-------E-----VST 214 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~-------~-----vs~ 214 (276)
..++++++.+ +|++++|+|+||+|||||+|++.+ ++|++.+++.... - .-.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~~~~~~~~~~~~q~~~l~ 72 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLPKFSRNKLIFIDQLQFLI 72 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCcccccccccEEEEhHHHHHH
Confidence 4577888887 899999999999999999999864 1344444433100 0 000
Q ss_pred ccCCCCc-eeeeEE--------------EEecC--CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 215 KSGRGKH-TTRHVS--------------LLPLS--GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 215 ~~g~gk~-tt~~~~--------------~~~~~--~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+.+.. ...... .+..+ +..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 73 ~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~---~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST---GLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1111110 011111 11224 57799999999 999999999999999997665 99999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-13 Score=133.21 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~ 62 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL------------EPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecC
Confidence 356777887777899999988 89999999999999999999999966 88999998875
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=121.28 Aligned_cols=90 Identities=26% Similarity=0.401 Sum_probs=71.2
Q ss_pred EEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--------
Q 023887 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------- 235 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-------- 235 (276)
|+|+||+|||||+++|+|.. +|++|+|.++|.++...+. ..+.++++++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE------------QPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 57999999999999999965 8999999999987654321 11234444443211
Q ss_pred ------------------------------------------------------------EEEecCCCCCCCCChhhHHH
Q 023887 236 ------------------------------------------------------------YLADTPGFNQPSLLKVTKQS 255 (276)
Q Consensus 236 ------------------------------------------------------------~iiDtPg~~~~~l~~~~~~~ 255 (276)
+++|||.. ++|....+.
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s---~LD~~~~~~ 138 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLS---ALDKKLRDQ 138 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc---cCCHHHHHH
Confidence 79999999 999999999
Q ss_pred HHHHHHHHhhc-c--eEEEeeeC
Q 023887 256 LAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 256 l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.+.+.++.+. + +|++||++
T Consensus 139 l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 139 MQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 5 99999986
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-13 Score=131.86 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=51.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
...+..+|+....++++++.+ +|.+++|||+||+||||||++|+|.. .|++|+|...+
T Consensus 6 ~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~------------~~~~G~i~~~~ 64 (530)
T COG0488 6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL------------EPDSGEVTRPK 64 (530)
T ss_pred EeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC------------cCCCCeEeecC
Confidence 356778888888899999988 89999999999999999999999977 89999987664
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.1e-13 Score=113.05 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=83.1
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc---------
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST--------- 214 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~--------- 214 (276)
.+...+.+|++.+ +|+.+.|.|+||+|||||+++|+|.. .|++|+|++++..+....+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl------------~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL------------RPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc------------CCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 3344567777777 89999999999999999999999977 9999999999887766443
Q ss_pred --ccCCCCceee--eEEEE---ecC-------------------------------------------CCcEEEecCCCC
Q 023887 215 --KSGRGKHTTR--HVSLL---PLS-------------------------------------------GGGYLADTPGFN 244 (276)
Q Consensus 215 --~~g~gk~tt~--~~~~~---~~~-------------------------------------------~~~~iiDtPg~~ 244 (276)
++|.....|. +..++ ... ...+|+|||..
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t- 159 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFT- 159 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccc-
Confidence 1121111110 00000 000 00189999999
Q ss_pred CCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 245 QPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 245 ~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
.+|......+...|.+-...| |+++||.
T Consensus 160 --aLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 160 --ALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred --ccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 999988888899998888776 8999996
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-13 Score=135.67 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=51.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++.
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~------------~p~~G~I~~~~~ 65 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV------------LLDDGRIIYEQD 65 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEeCCC
Confidence 456778887777899999988 89999999999999999999999965 899999988763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-13 Score=133.23 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred CceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 8 ~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~------------~p~~G~i~~~ 67 (556)
T PRK11819 8 TMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFEGEARPA 67 (556)
T ss_pred EEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEec
Confidence 3456778887 567899999998 89999999999999999999999965 8899998765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=137.17 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=104.3
Q ss_pred hcCceeEEEecCCcc---chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 134 TWGYEPLFCSVESKL---GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 134 ~~~~~~~~~s~~~~~---~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.++.+.++|.+.+ .+++++..+ +|+++|+||+||+||||.|-+|.+ +|+|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR------------fYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER------------FYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCccc
Confidence 356788999998655 577788777 899999999999999999999987 8999999999999999
Q ss_pred cccccccCCCCceeeeEEEEecCCCc------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------ 235 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------ 235 (276)
..+..+ |.+++++++.|++-+
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 988754 488999999998743
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+||.+. .||..+.+.+.+.+....+-- .++++|-+
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATS---ALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATS---ALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccch---hhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 69999999 999988888999988876532 89999976
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-13 Score=133.42 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=52.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++.
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~------------~pd~G~I~~~~~ 63 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI------------SADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCC
Confidence 456788888878899999998 89999999999999999999999965 899999988764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=128.20 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=76.2
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee-----
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT----- 223 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt----- 223 (276)
++.+++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++ ..++-++.........|
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL------------KPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEe-eeEEEecccccCCCCCcHHHHH
Confidence 56666666 89999999999999999999999976 8899998764 22222111110000000
Q ss_pred ---------------------------eeEEE--------------EecCCCcEEEecCCCCCCCCChhhHHHHHHHHHH
Q 023887 224 ---------------------------RHVSL--------------LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262 (276)
Q Consensus 224 ---------------------------~~~~~--------------~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~e 262 (276)
+.+.. +..++..+|+|||.. ++|......+.+.+.+
T Consensus 422 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~---~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 422 RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA---HLDVEQRLAVAKAIRR 498 (590)
T ss_pred HHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHH
Confidence 00000 000112289999999 9999999999999999
Q ss_pred Hhhc-c--eEEEeeeC
Q 023887 263 VCAV-G--LLYMIHML 275 (276)
Q Consensus 263 i~~~-~--ii~~~H~~ 275 (276)
+.+. + ++++|||+
T Consensus 499 l~~~~g~tviivsHD~ 514 (590)
T PRK13409 499 IAEEREATALVVDHDI 514 (590)
T ss_pred HHHhCCCEEEEEeCCH
Confidence 9764 4 99999996
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.5e-13 Score=117.71 Aligned_cols=110 Identities=20% Similarity=0.167 Sum_probs=71.7
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-eccccccccccccCCCCcee--ee
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTT--RH 225 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-~~g~~~~~vs~~~g~gk~tt--~~ 225 (276)
++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|. +++.... +......-+..| .+
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~sG~i~~~~~~~~~-~~~~~~l~~~ltv~en 69 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD------------APDEGDFIGLRGDALP-LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCCCEEEecCceec-cccccccCCcCcHHHH
Confidence 45667777 89999999999999999999999965 89999986 6664321 000000000000 00
Q ss_pred --------------------------------EEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHHHHH
Q 023887 226 --------------------------------VSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 226 --------------------------------~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~ 259 (276)
+..++ .++..+++|||.. ++|......+.+.
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~---~lD~~~~~~~~~~ 146 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLY---TGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc---cCCHHHHHHHHHH
Confidence 00000 0112279999998 8888888888887
Q ss_pred HHH-HhhcceEEEeeeC
Q 023887 260 FPE-VCAVGLLYMIHML 275 (276)
Q Consensus 260 f~e-i~~~~ii~~~H~~ 275 (276)
+.+ +.+.++|++||++
T Consensus 147 l~~~~~~~~ii~vsH~~ 163 (213)
T PRK15177 147 LACQLQQKGLIVLTHNP 163 (213)
T ss_pred HHHHhhCCcEEEEECCH
Confidence 654 4344599999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-12 Score=141.24 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=54.9
Q ss_pred hcCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec-ccc
Q 023887 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (276)
Q Consensus 134 ~~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~ 208 (276)
.+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER------------LYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hccCCCCeEEEeCCcc
Confidence 35567888888742 5799999998 899999999999999999999999 569999999994 555
Q ss_pred cc
Q 023887 209 VG 210 (276)
Q Consensus 209 ~~ 210 (276)
+.
T Consensus 450 i~ 451 (1466)
T PTZ00265 450 LK 451 (1466)
T ss_pred hh
Confidence 43
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-13 Score=117.30 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
....|+++++.+ +|++++|+|+||+|||||+++|+|.. +|++|++.++|+-..-+....|..+..|-
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~------------~Pt~G~v~v~G~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY------------KPTSGKVKVTGKVAPLIELGAGFDPELTG 106 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc------------CCCCceEEEcceEehhhhcccCCCcccch
Confidence 345789999998 89999999999999999999999954 99999998887643222222222222220
Q ss_pred -------------------------------------eEE--------------EEecCCCcEEEecCCCCCCCCChhhH
Q 023887 225 -------------------------------------HVS--------------LLPLSGGGYLADTPGFNQPSLLKVTK 253 (276)
Q Consensus 225 -------------------------------------~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~ 253 (276)
.+. ...+++..+|+||-.. -.|..=.
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla---vGD~~F~ 183 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA---VGDAAFQ 183 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh---cCCHHHH
Confidence 000 1112234489999876 5565445
Q ss_pred HHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 254 QSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 254 ~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+...+.+.++.+.+ ++++||+++
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~ 208 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLG 208 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHH
Confidence 66677778886655 999999863
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=137.07 Aligned_cols=122 Identities=24% Similarity=0.259 Sum_probs=104.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+...|..+ ..++++++.+ +|++++|||++|||||||+++|.+.. +|.+|+|.+||.++++
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~------------e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV------------EPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc------------CccCCeEEEcCeeccc
Confidence 4466777777654 6799999998 89999999999999999999999965 9999999999999999
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
+.-++ .++.++.+||++-+
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 88766 78889999998632
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++||.+. +.|..+..-+.+++++-.+.. +|.++|.+|
T Consensus 1282 QLlCLARALLr~skILvLDEATA---sVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATA---SVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccc---cCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 69999999 999988888888888766655 999999875
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-12 Score=115.40 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=43.2
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~------------~p~~G~I~i~g 98 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL------------EPSEGKIKHSG 98 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345788888887 89999999999999999999999965 89999988765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=124.07 Aligned_cols=109 Identities=26% Similarity=0.320 Sum_probs=93.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...+++++|.+ +|+-+++|||||+|||||.++|.|. ++|.+|.|.+||-++....+.. .-++
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~------------w~p~~G~VRLDga~l~qWd~e~-----lG~h 411 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI------------WPPTSGSVRLDGADLRQWDREQ-----LGRH 411 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcc------------cccCCCcEEecchhhhcCCHHH-----hccc
Confidence 46789999998 8999999999999999999999994 5999999999999888766432 4466
Q ss_pred EEEEecCCCc----------------------------------------------------------------------
Q 023887 226 VSLLPLSGGG---------------------------------------------------------------------- 235 (276)
Q Consensus 226 ~~~~~~~~~~---------------------------------------------------------------------- 235 (276)
++|++|+-.+
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 7788776322
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.++|||-. +||......+.+.+.+++++| +++++|-.
T Consensus 492 ~lvVLDEPNs---NLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 492 FLVVLDEPNS---NLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred cEEEecCCCC---CcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 59999999 999988999999999999998 89999953
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-12 Score=109.49 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=89.0
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-----cccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----QRVGEV 212 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----~~~~~v 212 (276)
.+..+|+...+-++++|.+ +|+..+|+|.||+|||||+++|.+.. .|+.|++.+.- .++-..
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl------------~p~~G~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL------------TPDAGTVTYRMRDGQPRDLYTM 78 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc------------CCCCCeEEEEcCCCCchhHhhh
Confidence 3455677777888999987 99999999999999999999999977 89999998754 222233
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
++. .+.+-.++.-+++.|.+.
T Consensus 79 sEa-eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 79 SEA-ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred chH-HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 321 122223344455554431
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..++|+|+- ++|---+..+.+++..+... + ++++|||+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTG---GLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTG---GLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCC---CcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 169999999 89876677888888888753 5 89999997
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-12 Score=114.34 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=85.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC-------
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG------- 217 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g------- 217 (276)
++..+++++..+ +|..+.++|.||+|||||+|+|+|.. .|++|.|.++|.++...+....
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l------------~~t~G~I~Idg~dVtk~~~~~RA~~larV 85 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL------------KPTSGQILIDGVDVTKKSVAKRANLLARV 85 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc------------ccCCceEEECceecccCCHHHHhhHHHHH
Confidence 345677777777 89999999999999999999999977 9999999999998876443210
Q ss_pred ----------------------------------------------------CCCceeeeEEEEec--------------
Q 023887 218 ----------------------------------------------------RGKHTTRHVSLLPL-------------- 231 (276)
Q Consensus 218 ----------------------------------------------------~gk~tt~~~~~~~~-------------- 231 (276)
..++.+..+++++-
T Consensus 86 fQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~ 165 (263)
T COG1101 86 FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH 165 (263)
T ss_pred hcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC
Confidence 00011111111110
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
++..+++||-+. .+|+...+.+.+.=.++.+.. .+++||+|
T Consensus 166 ~pkiLLLDEHTA---ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm 209 (263)
T COG1101 166 PPKILLLDEHTA---ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM 209 (263)
T ss_pred CCcEEEecchhh---cCCcchHHHHHHHHHHHHHhcCCceEEEeccH
Confidence 011179999999 999999999999888888764 89999987
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-12 Score=113.07 Aligned_cols=125 Identities=18% Similarity=0.340 Sum_probs=95.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~ 214 (276)
...+.+|+..-..+++|++.+ +|+.-+++||||+||||+|..|.|.. .|+.|+++++| .++...++
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt------------rp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT------------RPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC------------CCCcceEEEcCchhhccCCH
Confidence 356788888888999999988 89999999999999999999999987 89999999998 55544221
Q ss_pred c----cCCCCceee------------------------------------------------------------------
Q 023887 215 K----SGRGKHTTR------------------------------------------------------------------ 224 (276)
Q Consensus 215 ~----~g~gk~tt~------------------------------------------------------------------ 224 (276)
. -|.||...+
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh
Confidence 1 122221111
Q ss_pred -eEE-EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 225 -HVS-LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 225 -~~~-~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.++ ++-|+++.+++|+|-. ++.+.+.+...+++..++..- ++++.|||.
T Consensus 156 LEIGMll~Q~P~lLLlDEPvA---GMTd~Et~~taeLl~~la~~hsilVVEHDM~ 207 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVA---GMTDAETEKTAELLKSLAGKHSILVVEHDMG 207 (249)
T ss_pred hhhheeeccCCcEEEecCccC---CCcHHHHHHHHHHHHHHhcCceEEEEeccHH
Confidence 111 1223445589999999 998888889999999998764 999999984
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-12 Score=127.10 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=49.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~ 66 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFNGEARPAP 66 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecC
Confidence 456777886 556889999988 89999999999999999999999965 88999988764
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-12 Score=124.73 Aligned_cols=112 Identities=26% Similarity=0.364 Sum_probs=73.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccccc---------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS--------- 216 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~~~--------- 216 (276)
..++++++.+ +|.+++|+|+||+||||||+.|+|.. .|.+|+|.+.. ..++......
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~------------~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~ 403 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL------------GPLSGTVKVGETVKIGYFDQHRDELDPDKTV 403 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc------------ccCCceEEeCCceEEEEEEehhhhcCccCcH
Confidence 4677788877 89999999999999999999999977 67788775432 1111111000
Q ss_pred ---------CC---------------CCceeeeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHH
Q 023887 217 ---------GR---------------GKHTTRHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258 (276)
Q Consensus 217 ---------g~---------------gk~tt~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~ 258 (276)
.. +....+.+. ++...++.+|+|||+. +||..+.+.|.+
T Consensus 404 ~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN---hLDi~s~~aLe~ 480 (530)
T COG0488 404 LEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN---HLDIESLEALEE 480 (530)
T ss_pred HHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc---cCCHHHHHHHHH
Confidence 00 000000000 1111223389999999 999888888888
Q ss_pred HHHHHhhcceEEEeeeC
Q 023887 259 TFPEVCAVGLLYMIHML 275 (276)
Q Consensus 259 ~f~ei~~~~ii~~~H~~ 275 (276)
.+.++.-. +|++|||.
T Consensus 481 aL~~f~Gt-vl~VSHDr 496 (530)
T COG0488 481 ALLDFEGT-VLLVSHDR 496 (530)
T ss_pred HHHhCCCe-EEEEeCCH
Confidence 88776422 99999984
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-12 Score=128.00 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=78.5
Q ss_pred eEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-cccccccc
Q 023887 139 PLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTK 215 (276)
Q Consensus 139 ~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~ 215 (276)
.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++..
T Consensus 513 ~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll------------~p~~G~I~~~~~~~igyv~Q~ 580 (718)
T PLN03073 513 DASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL------------QPSSGTVFRSAKVRMAVFSQH 580 (718)
T ss_pred eeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCceEEECCceeEEEEecc
Confidence 34556643 34688888887 89999999999999999999999976 899999886542 11111110
Q ss_pred c-------------------CCCC---------------ceeeeEEEEe--------------cCCCcEEEecCCCCCCC
Q 023887 216 S-------------------GRGK---------------HTTRHVSLLP--------------LSGGGYLADTPGFNQPS 247 (276)
Q Consensus 216 ~-------------------g~gk---------------~tt~~~~~~~--------------~~~~~~iiDtPg~~~~~ 247 (276)
. +..+ ...+.+..++ ..+..+|+|||+. +
T Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~---~ 657 (718)
T PLN03073 581 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN---H 657 (718)
T ss_pred ccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---C
Confidence 0 0000 0000000000 0011289999999 9
Q ss_pred CChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 248 LLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 248 l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|....+.+.+.+.++. ..+|++|||+
T Consensus 658 LD~~s~~~l~~~L~~~~-gtvIivSHd~ 684 (718)
T PLN03073 658 LDLDAVEALIQGLVLFQ-GGVLMVSHDE 684 (718)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEEECCH
Confidence 99988888877776652 1399999986
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-12 Score=105.43 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=83.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
-+.++++.+ +|+++.++||||+|||||+..+.|.+.. -| --+|+++++++++..++. ..++++
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~--------~F-~~~G~~~l~~~~l~~lPa-------~qRq~G 80 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG--------QF-SCTGELWLNEQRLDMLPA-------AQRQIG 80 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhccc--------Cc-ceeeEEEECCeeccccch-------hhhhee
Confidence 355566666 8999999999999999999999997621 01 135999999999988764 346778
Q ss_pred EEecCCCc-------------------------------------------------------------------EEEec
Q 023887 228 LLPLSGGG-------------------------------------------------------------------YLADT 240 (276)
Q Consensus 228 ~~~~~~~~-------------------------------------------------------------------~iiDt 240 (276)
+++|+.-. +++||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 77776311 69999
Q ss_pred CCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 241 PGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 241 Pg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
|.. .+|..-.++.++ .|.+.++.| ++++|||.
T Consensus 161 PFS---~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 161 PFS---RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred chh---HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 998 787655555554 788998888 89999996
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-12 Score=135.51 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=87.9
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.+++. ....+++++..+ +|+.++|+|+||+|||||+|+|+|... ...|++|+|.++|+++..
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~---------~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT---------TGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---------CCCcceeEEEECCEECCh
Confidence 344555553 345788888887 899999999999999999999999752 013788999999876521
Q ss_pred --------cccccC----------------------------------------CCCceeeeEE----------------
Q 023887 212 --------VSTKSG----------------------------------------RGKHTTRHVS---------------- 227 (276)
Q Consensus 212 --------vs~~~g----------------------------------------~gk~tt~~~~---------------- 227 (276)
+...+. ......+.+.
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHH
Confidence 010000 0000000010
Q ss_pred --EEecCCC-cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 228 --LLPLSGG-GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 228 --~~~~~~~-~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+-.+++ .+++|||+. ++|......+.+.+.++++.| +|+++|+++
T Consensus 913 a~aL~~~P~~iLlLDEPTs---gLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTS---GLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCC---CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 0000122 479999999 999999999999999998776 999999863
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=116.99 Aligned_cols=110 Identities=28% Similarity=0.354 Sum_probs=91.9
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++++.+ +|+++++||.||+|||||=.+|++.. +++|+|+|+|+++...+.+. -+..++.++
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-------------~s~G~I~F~G~~i~~~~~~~--mrplR~~mQ 366 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-------------PSQGEIRFDGQDIDGLSRKE--MRPLRRRMQ 366 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-------------CcCceEEECCccccccChhh--hhhhhhhce
Confidence 456677666 89999999999999999999999965 45599999999998877543 245778899
Q ss_pred EEecCCCc------------------------------------------------------------------------
Q 023887 228 LLPLSGGG------------------------------------------------------------------------ 235 (276)
Q Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (276)
+++|++.+
T Consensus 367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~ 446 (534)
T COG4172 367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE 446 (534)
T ss_pred EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence 99998744
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. .||.--+.++.+++.++.+. + .+++|||+.
T Consensus 447 ~i~LDEPTS---ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 447 LILLDEPTS---ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred EEEecCCch---HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 69999999 89887788899999999874 5 899999973
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=123.52 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=81.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeeccccccc---------c
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE---------V 212 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~---------v 212 (276)
+...+++++..+ +|+.++|+|+||+|||||+|+|+|.. +| .+|+|.++|.++.. +
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~------------~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEECCHHHHhhhceee
Confidence 455788888887 89999999999999999999999965 44 37899998876421 0
Q ss_pred cccc----------------------------------------CCCCceeeeEEE----EecC----------------
Q 023887 213 STKS----------------------------------------GRGKHTTRHVSL----LPLS---------------- 232 (276)
Q Consensus 213 s~~~----------------------------------------g~gk~tt~~~~~----~~~~---------------- 232 (276)
...+ |......+.++. -.++
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 0000 000000011110 0011
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|..+...+.+.+.++.+.| +|+++|++
T Consensus 185 p~vlllDEPts---gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~ 226 (617)
T TIGR00955 185 PPLLFCDEPTS---GLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226 (617)
T ss_pred CCEEEeeCCCc---chhHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 12279999999 999999999999999998766 89999986
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-11 Score=105.22 Aligned_cols=103 Identities=25% Similarity=0.358 Sum_probs=75.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc----------------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK---------------------- 215 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~---------------------- 215 (276)
.|++.=+|||||+|||||+-.|+|.. |-+|+|.++|+++...+..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 68999999999999999999999964 7899999999877541100
Q ss_pred --------------------------cCC---------CCcee-eeEEEEec-C------CCcEEEecCCCCCCCCChhh
Q 023887 216 --------------------------SGR---------GKHTT-RHVSLLPL-S------GGGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 216 --------------------------~g~---------gk~tt-~~~~~~~~-~------~~~~iiDtPg~~~~~l~~~~ 252 (276)
+.. |.-.+ +-.+.+.| . .+.+++|||.. ++|-..
T Consensus 91 ~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~---~LDvAQ 167 (248)
T COG4138 91 HYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN---SLDVAQ 167 (248)
T ss_pred hhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc---chhHHH
Confidence 000 00011 11111111 1 13489999999 898877
Q ss_pred HHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 253 KQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 253 ~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+.+++.+++.+| |++++||+|
T Consensus 168 ~~aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 168 QSALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred HHHHHHHHHHHHhCCcEEEEeccchh
Confidence 888999999999998 999999986
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-11 Score=120.81 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=48.2
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~------------~~~~G~i~~~ 512 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW------------PVYGGRLTKP 512 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEeec
Confidence 34566777774 346799999888 89999999999999999999999954 7888877654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-11 Score=130.24 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=79.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc---------ccccC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV---------STKSG 217 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v---------s~~~g 217 (276)
..+++++..+ +|+.++|+|+||+|||||+|+|+|... .-+.+|+|.++|.+.... ...+.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~----------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~ 963 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYIEGDIRISGFPKKQETFARISGYCEQNDI 963 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC----------CCcccceEEECCccCChHHhhhheEEEccccc
Confidence 4677888877 899999999999999999999999651 014679998888653210 00000
Q ss_pred C------------------CCceee------------eEEE-------E------ec----------------CCCcEEE
Q 023887 218 R------------------GKHTTR------------HVSL-------L------PL----------------SGGGYLA 238 (276)
Q Consensus 218 ~------------------gk~tt~------------~~~~-------~------~~----------------~~~~~ii 238 (276)
. .+..+. ...+ + .+ ++..+++
T Consensus 964 ~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~L 1043 (1470)
T PLN03140 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1043 (1470)
T ss_pred cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEE
Confidence 0 000000 0000 0 00 1122799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|||+. +||......+.+.+.++++.| +|+++|+++
T Consensus 1044 DEPTs---gLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1044 DEPTS---GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred eCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 99999 999999999999999998877 999999863
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-11 Score=101.49 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=62.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++.++|.+ +|++.+++|.||+|||||.++|+|.. +|++|+|.+|+..+.--... ....++.
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi------------~PTsG~il~n~~~L~~~Dy~-----~R~k~IR 90 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGEILINDHPLHFGDYS-----FRSKRIR 90 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc------------CCCCceEEECCccccccchH-----hhhhhee
Confidence 345566666 79999999999999999999999966 99999999999876432211 1346788
Q ss_pred EEecCCCc---------EEEecCCCCCCCCCh
Q 023887 228 LLPLSGGG---------YLADTPGFNQPSLLK 250 (276)
Q Consensus 228 ~~~~~~~~---------~iiDtPg~~~~~l~~ 250 (276)
|++|+++. .|+|.|.-....+++
T Consensus 91 MiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~ 122 (267)
T COG4167 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122 (267)
T ss_pred eeecCCccccChhhhhhhHhcchhhhcccCCh
Confidence 88887643 455555554444443
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-11 Score=119.09 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=82.4
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
+..+++++... +|+..|++|+||+|||||||+|+|..... ...+|+|.+||++...- ...+.
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~---------~~~~G~ilvNG~~~~~~--------~~~~~ 105 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG---------LKLSGEILLNGRPRDSR--------SFRKI 105 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC---------CcceEEEEECCccCchh--------hhhhe
Confidence 44566666665 89999999999999999999999976210 25789999999443221 02233
Q ss_pred EEEEecCCC-----------------------------------------------------------------------
Q 023887 226 VSLLPLSGG----------------------------------------------------------------------- 234 (276)
Q Consensus 226 ~~~~~~~~~----------------------------------------------------------------------- 234 (276)
.+++.|++-
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 344444321
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||+. +||......+.+.++++++.| ||++.|..
T Consensus 186 l~~P~iLflDEPTS---GLDS~sA~~vv~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 186 LTDPSILFLDEPTS---GLDSFSALQVVQLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred HcCCCEEEecCCCC---CcchhhHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 179999999 999999999999999999988 88889964
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-11 Score=102.62 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=91.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|+....+-++.+.. .|++++++||||+|||||++.|.=.. .|.+|+..+-+.... .|..+
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle------------~p~sg~l~ia~~~fd-~s~~~ 72 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFD-FSKTP 72 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh------------CCCCCeEEecccccc-cccCc
Confidence 44667788878888777765 89999999999999999999987544 789999877654321 11111
Q ss_pred --CCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 217 --GRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 217 --g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
...+..+++++|++|....
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 1223355667777665433
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++.|+|+. .+|+....++...++|+.+.| -+++||..
T Consensus 153 aralmmkpqvllfdepta---aldpeitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 153 ARALMMEPQVLLFDEPTA---ALDPEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHhcCCcEEeecCccc---ccCHHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 69999999 999988888999999999988 48889975
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-11 Score=125.38 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=92.7
Q ss_pred eEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 139 PLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
.+..-|.... .++++++.+ +|++.++.|+|||||||++|+|.|.. +|++|++++.|..+..-....
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~------------~~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET------------KPTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc------------cCCcceEEEecCccccccchh
Confidence 3444555444 667777776 89999999999999999999999977 999999999887765422111
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
. ..++++++||....
T Consensus 637 ~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 637 Q----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred h----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 1 33456666665321
Q ss_pred -------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 -------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 -------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|+|.- ++|+..++.+++.++++++.+ ++++||.|+
T Consensus 713 lig~p~vi~LDEPst---GmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 713 LIGDPSVILLDEPST---GLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred HhcCCCEEEecCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 69999999 999999999999999999875 999999874
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-11 Score=125.63 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=50.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|... ...|.+|+|.+.++
T Consensus 179 ~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~---------~g~p~~g~I~~~~Q 242 (718)
T PLN03073 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI---------DGIPKNCQILHVEQ 242 (718)
T ss_pred EEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---------CCCCCCCEEEEEec
Confidence 3456888887777899999988 899999999999999999999998531 01477777765443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=101.49 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=34.1
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 137 ~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~tiIiitH~~ 176 (197)
T cd03278 137 PFCVLDEVDA---ALDDANVERFARLLKEFSKETQFIVITHRK 176 (197)
T ss_pred CEEEEeCCcc---cCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 4589999999 999999999999999987633 99999986
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-11 Score=112.80 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=98.9
Q ss_pred CceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.|..+.+.|. ..+++.++++.+ .|++++++|+||+||||++++|.+ ||++.+|.|.++|+++..+.
T Consensus 264 ~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR------------FyD~~sG~I~id~qdir~vt 331 (497)
T COG5265 264 AFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR------------FYDVNSGSITIDGQDIRDVT 331 (497)
T ss_pred EEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH------------HhCCcCceEEEcchhHHHhH
Confidence 3456666664 456899999987 899999999999999999999998 88999999999999998865
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.+. .++.++++||+.-+
T Consensus 332 q~s-----lR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 332 QQS-----LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHH-----HHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 443 66777777776311
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++||.+. .||.-+.+++.+.+.++...- .++++|-+
T Consensus 407 rvaiar~ilk~p~il~~deats---aldt~te~~iq~~l~~~~~~rttlviahrl 458 (497)
T COG5265 407 RVAIARTILKNPPILILDEATS---ALDTHTEQAIQAALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhh---HhhhhHHHHHHHHHHHHhCCCeEEEEeehh
Confidence 68999998 899888999999999987533 88999976
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-11 Score=113.00 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=53.8
Q ss_pred hhcCceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 133 HTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 133 ~~~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
..+.++.+.++|... .-+.-++..+ +|+.+-++|.||||||||+.+|.| +|+|++|+|.+||.++.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG------------L~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVS 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc------------ccCCCCCceeECCccCC
Confidence 345566777777654 3344555555 899999999999999999999999 56999999999999886
Q ss_pred c
Q 023887 211 E 211 (276)
Q Consensus 211 ~ 211 (276)
.
T Consensus 389 ~ 389 (546)
T COG4615 389 A 389 (546)
T ss_pred C
Confidence 5
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=125.61 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=44.4
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..+++++..+ +|+.++|+|+||+|||||+|+|+|... ....|.+|+|.++|.++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~--------~~~~~~~G~I~~~G~~~ 129 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD--------GFHIGVEGVITYDGITP 129 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCceeEEEECCEeh
Confidence 4577777776 899999999999999999999999641 12367899999998755
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-10 Score=101.88 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=52.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec-CCCcEEE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLA 238 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~-~~~~~ii 238 (276)
..++++|+||||||||+|.|.| ++++-+|+++...||.-+ +.+.. +.+..++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G-------------------------~KisIvS~k~QTTR~~I~--GI~t~~~~QiIfv 59 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVG-------------------------QKISIVSPKPQTTRNRIR--GIVTTDNAQIIFV 59 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhc-------------------------CceEeecCCcchhhhhee--EEEEcCCceEEEE
Confidence 3789999999999999999998 456777777763222222 23333 3466899
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
||||+..|. ..............+.+.. ++++
T Consensus 60 DTPGih~pk-~~l~~~m~~~a~~sl~dvDlilfv 92 (298)
T COG1159 60 DTPGIHKPK-HALGELMNKAARSALKDVDLILFV 92 (298)
T ss_pred eCCCCCCcc-hHHHHHHHHHHHHHhccCcEEEEE
Confidence 999997773 2223333333334444444 4443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-10 Score=123.34 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=50.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++.+.++|.. ...++++++.+ +|+.++++|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~------------~~~~G~i~~~g 699 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVHMKG 699 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------ccCCcEEEECC
Confidence 345667777754 35789999887 89999999999999999999999965 89999998876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=86.49 Aligned_cols=78 Identities=29% Similarity=0.418 Sum_probs=46.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE--EecCC-CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSG-GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~--~~~~~-~~~i 237 (276)
.++|+|++|||||||+|+|.+.. ...++..++ +|+...+ +.... ...+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-------------------------~~~~~~~~~----~T~~~~~~~~~~~~~~~~~ 51 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-------------------------LAKVSNIPG----TTRDPVYGQFEYNNKKFIL 51 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-------------------------SSEESSSTT----SSSSEEEEEEEETTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccc-------------------------ccccccccc----ceeeeeeeeeeeceeeEEE
Confidence 47999999999999999999843 122332333 5544432 23333 3479
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||||+....-.....+.+.+++..+....
T Consensus 52 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 81 (116)
T PF01926_consen 52 VDTPGINDGESQDNDGKEIRKFLEQISKSD 81 (116)
T ss_dssp EESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred EeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence 999999443322221234556666663334
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-10 Score=122.65 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=76.5
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC-------
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR------- 218 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~------- 218 (276)
...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|. ++-++..+..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~------------~~~~G~i~~~g~-iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL------------EPSEGKIKHSGR-ISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCE-EEEEeCCCccCCccHHH
Confidence 34678888887 89999999999999999999999965 899999988762 2222211100
Q ss_pred ----CCce--------------eeeEEEEe-------------c----------------CCCcEEEecCCCCCCCCChh
Q 023887 219 ----GKHT--------------TRHVSLLP-------------L----------------SGGGYLADTPGFNQPSLLKV 251 (276)
Q Consensus 219 ----gk~t--------------t~~~~~~~-------------~----------------~~~~~iiDtPg~~~~~l~~~ 251 (276)
|... ...+..++ + ++..+|+|+|.. ++|..
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s---aLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT---HLDVV 582 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc---cCCHH
Confidence 0000 00000000 0 112289999999 99998
Q ss_pred hHHHHHH-HHHHHhhcc-eEEEeeeCC
Q 023887 252 TKQSLAQ-TFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 252 ~~~~l~~-~f~ei~~~~-ii~~~H~~~ 276 (276)
..+.+.+ .+.++.+.. +|++||+++
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 8888876 466654422 999999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-10 Score=106.09 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=93.8
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...++++++.+ +|+++++||.||+|||-..+.+++.+.. +--..-+|+|.|+|.++-..++.. +.+-.-..
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~-------~~~~~~sg~i~f~G~dll~~se~~-lr~iRG~~ 94 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS-------PAAAHPSGSILFDGEDLLAASERQ-LRGVRGNK 94 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC-------CcccCccceeEEcChhhhcCCHHH-Hhhhcccc
Confidence 45688888888 8999999999999999999999997721 111234689999999988777543 22233367
Q ss_pred EEEEecCCCc----------------------------------------------------------------------
Q 023887 226 VSLLPLSGGG---------------------------------------------------------------------- 235 (276)
Q Consensus 226 ~~~~~~~~~~---------------------------------------------------------------------- 235 (276)
++|++|++-.
T Consensus 95 I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 95 IGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred eEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 8899887522
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|.|||+- .||-..+.++.+++.++... | ++++|||++
T Consensus 175 ~P~lLIADEPTT---ALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~ 219 (534)
T COG4172 175 EPDLLIADEPTT---ALDVTVQAQILDLLKELQAELGMAILFITHDLG 219 (534)
T ss_pred CCCeEeecCCcc---hhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH
Confidence 69999999 89877788999999999975 5 999999974
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-10 Score=107.32 Aligned_cols=100 Identities=30% Similarity=0.415 Sum_probs=63.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec--------cccccc-------------------
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE--------DQRVGE------------------- 211 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~--------g~~~~~------------------- 211 (276)
..+++||||||||||||+.+|.|.+ +|..|+..-+ .+..++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl------------~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp 680 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL------------DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLP 680 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC------------CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCC
Confidence 4789999999999999999999987 8999885311 111100
Q ss_pred ---cccc---cCCCCceeeeEEEEecCC----------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceE
Q 023887 212 ---VSTK---SGRGKHTTRHVSLLPLSG----------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLL 269 (276)
Q Consensus 212 ---vs~~---~g~gk~tt~~~~~~~~~~----------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii 269 (276)
.... .|...|.. .+.+..+++ ..+|+|+|+. .||..+.+.|.+.+.++.- |+|
T Consensus 681 yq~ARK~LG~fGL~sHAH-TikikdLSGGQKaRValaeLal~~PDvlILDEPTN---NLDIESIDALaEAIney~G-gVi 755 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAH-TIKIKDLSGGQKARVALAELALGGPDVLILDEPTN---NLDIESIDALAEAINEYNG-GVI 755 (807)
T ss_pred hHHHHHHhhhhhhhhccc-eEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC---CcchhhHHHHHHHHHhccC-cEE
Confidence 0000 11111111 122333322 3389999999 8887777777777666532 399
Q ss_pred EEeeeC
Q 023887 270 YMIHML 275 (276)
Q Consensus 270 ~~~H~~ 275 (276)
++|||-
T Consensus 756 ~VsHDe 761 (807)
T KOG0066|consen 756 MVSHDE 761 (807)
T ss_pred EEeccc
Confidence 999983
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=93.72 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
+.-++|+|.||||||||||+|.+.. .+...|..+| .|+.+-++...++..++
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k------------------------~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQK------------------------NLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCc------------------------ceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 4569999999999999999999943 4566777777 88999999998889999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhh
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCA 265 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~ 265 (276)
|-||++--......++...+.+.+.-+
T Consensus 76 DlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 76 DLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 999994333444344444444444443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-10 Score=120.81 Aligned_cols=56 Identities=27% Similarity=0.269 Sum_probs=46.4
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i 202 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|.+|.+
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~G~i 674 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL------------SHAETSS 674 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------cccCCCE
Confidence 445677788863 45799999988 89999999999999999999999965 7877754
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-10 Score=94.49 Aligned_cols=63 Identities=25% Similarity=0.475 Sum_probs=50.9
Q ss_pred HHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec
Q 023887 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (276)
Q Consensus 153 l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~ 231 (276)
+++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|.+++.++...... .....++++++
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~------------~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~~~~ 66 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL------------PPDSGSILINGKDISDIDIE-----ELRRRIGYVPQ 66 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS------------HESEEEEEETTEEGTTSHHH-----HHHHTEEEEES
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccc------------cccccccccccccccccccc-----ccccccccccc
Confidence 34445 79999999999999999999999965 89999999999988773322 15567888887
Q ss_pred C
Q 023887 232 S 232 (276)
Q Consensus 232 ~ 232 (276)
.
T Consensus 67 ~ 67 (137)
T PF00005_consen 67 D 67 (137)
T ss_dssp S
T ss_pred c
Confidence 5
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=120.46 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=49.0
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc-cceeec
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFE 205 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~-G~i~~~ 205 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|++|+|||||+++|+|.. +|.+ |+|.+.
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~GG~I~l~ 678 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL------------PPRSDASVVIR 678 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh------------ccCCCceEEEc
Confidence 445677888863 35689999888 89999999999999999999999955 8888 787653
|
|
| >cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=77.56 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=51.5
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccccccccc
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r 71 (276)
|.+.|... .+.+ .+..+ ++..+.|.++|++++....|+|||||.++..+ ++.++|++++||+|.|.|
T Consensus 1 ~~grVv~~-~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 1 MEGLIIKA-IGGFYYVETE-DGKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CCEEEEEE-ECCEEEEEeC-CCeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 45667766 4555 55543 46789999999998656779999999998633 456899999999999875
|
Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-09 Score=117.28 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=44.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeeccccc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~ 209 (276)
...+++++..+ +|+.++|+|+||+|||||+|+|+|.. +|+ +|+|.++|.++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l------------~~~~~~~G~I~~nG~~~ 232 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL------------DPSLKVSGEITYNGYRL 232 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEec
Confidence 45688888877 89999999999999999999999976 676 89999988654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-09 Score=113.91 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=81.8
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc------------
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS------------ 213 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs------------ 213 (276)
.+.|++++-.+ ||..+||+|.||+|||||||.|+|.... -..+|+|.++|.+....+
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~----------G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~D 873 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG----------GYIEGDILISGFPKDQETFARVSGYVEQQD 873 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc----------ceEEeEEEECCeeCchhhhccccceeeccc
Confidence 34556555555 8999999999999999999999996522 456788999987765200
Q ss_pred --------------------------------------------------cccCCC------CceeeeEEEEecCCCcEE
Q 023887 214 --------------------------------------------------TKSGRG------KHTTRHVSLLPLSGGGYL 237 (276)
Q Consensus 214 --------------------------------------------------~~~g~g------k~tt~~~~~~~~~~~~~i 237 (276)
..+|.| |..|-.+.++.-+.-.++
T Consensus 874 iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 874 IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred ccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 001111 111222222221123379
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|||+. |||..+...+.+.++.+...| |+.+.|..
T Consensus 954 LDEPTS---GLDsqaA~~i~~~lrkla~tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 954 LDEPTS---GLDSQAAAIVMRFLRKLADTGQTILCTIHQP 990 (1391)
T ss_pred ecCCCC---CccHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 999999 999999999999999999998 99999975
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-09 Score=92.03 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=39.2
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.++++++.+ .|+++++-|+||+|||||+++|.+ -|.|++|.|++.
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYa------------NY~~d~G~I~v~ 71 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA------------NYLPDEGQILVR 71 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh------------ccCCCCceEEEE
Confidence 466777776 799999999999999999999999 469999999864
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-10 Score=107.41 Aligned_cols=111 Identities=25% Similarity=0.298 Sum_probs=71.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc--------ccc----------
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------QRV---------- 209 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------~~~---------- 209 (276)
...++++-+ .+.++++|||||+||||||+++.|.. .|..|.+..+. +..
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl------------~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL------------QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc------------ccccccccccccccchhhhhhhHhhcCcchhH
Confidence 445555555 78999999999999999999999987 78888874221 100
Q ss_pred --------------cccc---cccCC-CCceeeeEEEEec--------------CCCcEEEecCCCCCCCCChhhHHHHH
Q 023887 210 --------------GEVS---TKSGR-GKHTTRHVSLLPL--------------SGGGYLADTPGFNQPSLLKVTKQSLA 257 (276)
Q Consensus 210 --------------~~vs---~~~g~-gk~tt~~~~~~~~--------------~~~~~iiDtPg~~~~~l~~~~~~~l~ 257 (276)
..++ .+-|. |++.+..++.++- .+.++++|||+. ++|-.+.+.+.
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn---hLDi~tid~la 549 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN---HLDIETIDALA 549 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc---CCCchhHHHHH
Confidence 0000 01110 1111111111111 124489999999 99988888888
Q ss_pred HHHHHHhhcceEEEeeeC
Q 023887 258 QTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 258 ~~f~ei~~~~ii~~~H~~ 275 (276)
+++.|+. -|++++|||+
T Consensus 550 eaiNe~~-Ggvv~vSHDf 566 (614)
T KOG0927|consen 550 EAINEFP-GGVVLVSHDF 566 (614)
T ss_pred HHHhccC-Cceeeeechh
Confidence 8887754 2499999986
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=117.66 Aligned_cols=49 Identities=37% Similarity=0.528 Sum_probs=42.0
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.+...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.+.
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~------------~~~~G~i~~~ 720 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF------------EISEGRVWAE 720 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEEC
Confidence 3445688888887 89999999999999999999999966 8888988764
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=91.06 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=35.8
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++++.+ ++++||+++
T Consensus 152 ~~~lllDEp~~---~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 152 LEALFIDEGFG---TLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred CCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 35699999999 999999999999999998755 999999863
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-09 Score=91.83 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.3
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 159 ~llllDEPt~---gLD~~~~~~l~~~l~~~~~~g~tii~itH~~ 199 (226)
T cd03270 159 VLYVLDEPSI---GLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199 (226)
T ss_pred CEEEEeCCcc---CCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH
Confidence 4799999999 999999999999999998766 99999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.3e-09 Score=94.56 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=62.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc------------cCCCCceeeeE-
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK------------SGRGKHTTRHV- 226 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~------------~g~gk~tt~~~- 226 (276)
+.++++|+||+|||||+++|+|.. .|.+|++.++|+++..+... ...+..++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~------------~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL------------STGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc------------CCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 578999999999999999999966 89999999999988643211 01111111000
Q ss_pred ---------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 227 ---------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 227 ---------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
....+++..+++|||+. .+.+...+..+. .| +++++|+.
T Consensus 180 ~~k~~~~~~~i~~~~P~villDE~~~---------~e~~~~l~~~~~-~G~~vI~ttH~~ 229 (270)
T TIGR02858 180 CPKAEGMMMLIRSMSPDVIVVDEIGR---------EEDVEALLEALH-AGVSIIATAHGR 229 (270)
T ss_pred chHHHHHHHHHHhCCCCEEEEeCCCc---------HHHHHHHHHHHh-CCCEEEEEechh
Confidence 00112345689999874 234555555554 45 99999963
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-08 Score=89.39 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..-+++|+|++|||||||+|+|.|..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999999954
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=95.92 Aligned_cols=84 Identities=30% Similarity=0.385 Sum_probs=66.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-- 235 (276)
.|-.++++|+||||||||+|+|++..+ .-++.-+| |||.+-...+.-++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~-------------------------AIVTdI~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR-------------------------AIVTDIAG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc-------------------------eEecCCCC----CccceEEEEEEECCEE
Confidence 478999999999999999999999653 33555567 99888766554333
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
.|+||.|+|+. -|.+++..+.+....+.+.. ++++
T Consensus 267 v~l~DTAGiRet-~d~VE~iGIeRs~~~i~~ADlvL~v 303 (454)
T COG0486 267 VRLVDTAGIRET-DDVVERIGIERAKKAIEEADLVLFV 303 (454)
T ss_pred EEEEecCCcccC-ccHHHHHHHHHHHHHHHhCCEEEEE
Confidence 69999999844 47788899999999999887 5554
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-08 Score=86.48 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHH-HHHHHHHHHhhc-c--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~-~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+ .+.+.+.++.+. + ++++||++
T Consensus 139 ~p~illlDEP~~---~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 139 NCGILALDEPTT---NLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred CCCEEEEcCCcc---ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 456799999999 99998888 899999999875 4 99999985
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=83.23 Aligned_cols=56 Identities=36% Similarity=0.477 Sum_probs=35.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE--EEEecC-CCcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--SLLPLS-GGGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~--~~~~~~-~~~~i 237 (276)
.++++|.||||||||+|+|.|.. .. ++..+| +|... +.+... ....+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-----------------------~~---v~n~pG----~Tv~~~~g~~~~~~~~~~l 51 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-----------------------QK---VGNWPG----TTVEKKEGIFKLGDQQVEL 51 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-----------------------EE---EEESTT----SSSEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-----------------------ce---ecCCCC----CCeeeeeEEEEecCceEEE
Confidence 58999999999999999999954 23 344456 44333 333332 35589
Q ss_pred EecCCCCCC
Q 023887 238 ADTPGFNQP 246 (276)
Q Consensus 238 iDtPg~~~~ 246 (276)
+|+||.-.+
T Consensus 52 vDlPG~ysl 60 (156)
T PF02421_consen 52 VDLPGIYSL 60 (156)
T ss_dssp EE----SSS
T ss_pred EECCCcccC
Confidence 999997443
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-08 Score=95.66 Aligned_cols=81 Identities=28% Similarity=0.281 Sum_probs=67.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC---C
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---G 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~ 234 (276)
.|-.++|+|+||||||||+|+|.... ..-+|+.+| ||+..-...+.. .
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57899999999999999999999854 455777777 888776655554 3
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
.+|.||.|+++..-+.+++..+.+.+..+....
T Consensus 318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ad 350 (531)
T KOG1191|consen 318 VRLSDTAGIREESNDGIEALGIERARKRIERAD 350 (531)
T ss_pred EEEEeccccccccCChhHHHhHHHHHHHHhhcC
Confidence 489999999997788888899999999998877
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.73 E-value=6e-08 Score=83.73 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|+||||||||+|+|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 68999999999999999999964
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-08 Score=95.33 Aligned_cols=83 Identities=25% Similarity=0.297 Sum_probs=60.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec---CCCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL---SGGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~---~~~~~ 236 (276)
.+++|+|.||||||||+|.|+|.. .+-++..+| +|+...+-.. +....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-------------------------~AIV~D~pG----vTRDr~y~~~~~~~~~f~ 54 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-------------------------IAIVSDTPG----VTRDRIYGDAEWLGREFI 54 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-------------------------eeEeecCCC----CccCCccceeEEcCceEE
Confidence 479999999999999999999844 555666777 7765544332 23568
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
++||+|+-...-+.....-..++...+.+.. +|++
T Consensus 55 lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfv 90 (444)
T COG1160 55 LIDTGGLDDGDEDELQELIREQALIAIEEADVILFV 90 (444)
T ss_pred EEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEE
Confidence 9999999544444566666777888887776 5554
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=87.98 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc----CCCCce---e--eeEEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS----GRGKHT---T--RHVSL 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~----g~gk~t---t--~~~~~ 228 (276)
+|++++|+|+||+|||||++++.+... ......+.++...++.+..+......... +.+... . ..+..
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~ 104 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILS 104 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH---HHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHH
Confidence 568999999999999999999984210 00001111122222222111111111000 000000 0 00000
Q ss_pred EecCCCcEEEecCCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 229 LPLSGGGYLADTPGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
....+..+++|||+. ++|......+.. .+..+.+.+ ++++||+.
T Consensus 105 ~~~~~~llllDEp~~---gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 105 LATPRSLVLIDELGR---GTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred hccCCeEEEEecCCC---CCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 011346689999999 999877776644 566666655 89999975
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-08 Score=88.00 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|||||||+|+|.|..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~ 24 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK 24 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999843
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=80.12 Aligned_cols=60 Identities=33% Similarity=0.538 Sum_probs=42.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|.+|+|||||+|.|.+.. .....+...+ +|..+.++..+....++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~li 69 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK------------------------KLARTSKTPG----RTQLINFFEVNDGFRLV 69 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----cceEEEEEEeCCcEEEE
Confidence 4579999999999999999999842 1122232233 66666666655677899
Q ss_pred ecCCCCCC
Q 023887 239 DTPGFNQP 246 (276)
Q Consensus 239 DtPg~~~~ 246 (276)
||||+...
T Consensus 70 DtpG~~~~ 77 (179)
T TIGR03598 70 DLPGYGYA 77 (179)
T ss_pred eCCCCccc
Confidence 99998443
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=87.71 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeee
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHM 274 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~ 274 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +++++|.
T Consensus 181 ~~illlDEp~~---~ld~~~~~~~~~~l~~~~~~~~ii~~~h~ 220 (243)
T cd03272 181 APFYLFDEIDA---ALDAQYRTAVANMIKELSDGAQFITTTFR 220 (243)
T ss_pred CCEEEEECCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46799999999 999999999999999986633 5666664
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-08 Score=85.59 Aligned_cols=41 Identities=12% Similarity=-0.077 Sum_probs=32.7
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||+. ++|..+...+. ..+.++.+.+ +|++||++
T Consensus 105 ~p~llllDEp~~---glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~ 148 (199)
T cd03283 105 EPVLFLLDEIFK---GTNSRERQAASAAVLKFLKNKNTIGIISTHDL 148 (199)
T ss_pred CCeEEEEecccC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 457799999999 89987776664 5678887665 89999986
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-08 Score=96.17 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=82.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-----------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK----------- 215 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~----------- 215 (276)
..++++++.+ +|..++++|+||+||||++++++|.. ....|..|.|++|.+.+-...++..-+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~----~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ----KGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh----hcccccccCCCCCceeccccchhhccCcccccccCchhH
Confidence 3466677666 79999999999999999999999976 4567889999999986543322211100
Q ss_pred --------------------cCCC---------------Ccee-eeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHH
Q 023887 216 --------------------SGRG---------------KHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 216 --------------------~g~g---------------k~tt-~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~ 259 (276)
.|.+ .+-+ +-..++.-.++.+++|+-+. .+|..+...+..-
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A---hLD~~TA~rVArk 549 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA---HLDELTAVRVARK 549 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh---hcCHHHHHHHHHH
Confidence 0000 0000 00001111123389999999 8999999999999
Q ss_pred HHHHhhc-c--eEEEeeeC
Q 023887 260 FPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 260 f~ei~~~-~--ii~~~H~~ 275 (276)
+.++... + ++++||..
T Consensus 550 iselaRe~giTlivvThrp 568 (593)
T COG2401 550 ISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHHHHHhCCeEEEEecCH
Confidence 9999864 5 78888853
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-08 Score=86.09 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=34.9
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.+ ++++||+.
T Consensus 150 p~ililDEPt~---gLD~~~~~~l~~~l~~~~~~~~~iivs~~~ 190 (212)
T cd03274 150 TPLYVMDEIDA---ALDFRNVSIVANYIKERTKNAQFIVISLRN 190 (212)
T ss_pred CCEEEEcCCCc---CCCHHHHHHHHHHHHHHcCCCEEEEEECcH
Confidence 46799999999 999999999999999987655 89999973
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=79.05 Aligned_cols=59 Identities=32% Similarity=0.494 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|.+|||||||+|.|.+.. .+...+...| +|+.+..+.......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~l~l~ 75 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK------------------------NLARTSKTPG----RTQLINFFEVNDKLRLV 75 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----ceeEEEEEecCCeEEEe
Confidence 3579999999999999999999842 1122222233 55666666655678899
Q ss_pred ecCCCCC
Q 023887 239 DTPGFNQ 245 (276)
Q Consensus 239 DtPg~~~ 245 (276)
||||+..
T Consensus 76 DtpG~~~ 82 (196)
T PRK00454 76 DLPGYGY 82 (196)
T ss_pred CCCCCCC
Confidence 9999843
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-08 Score=86.02 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhhcc--eEEEeee
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~~~--ii~~~H~ 274 (276)
.+..+++|||+. ++|......+. ..+.++.+.+ ++++||+
T Consensus 108 ~p~llllDEp~~---glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 108 PDSLVLLDELGS---GTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCcEEEEcCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 456799999999 99988888775 5678877665 8999997
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=84.43 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|++|||||||+|.|.|..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~ 29 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK 29 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999843
|
|
| >cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=66.83 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-.|.| .+..+ +|..+.|++||+|++.+..++|||+|.++....+++++.|.
T Consensus 3 ~~G~Vi~~~~g~~~~V~~~-~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I~ 62 (64)
T cd04451 3 MEGVVTEALPNAMFRVELE-NGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRIV 62 (64)
T ss_pred EEEEEEEEeCCCEEEEEeC-CCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEEE
Confidence 6788998833466 66554 78899999999998667789999999999542234456553
|
IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-07 Score=82.70 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=33.5
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|+-++ .+|-+...+|.+.|++=.++ | |++.||.++
T Consensus 169 LLLDEVTV---DLDVlARadLLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 169 LLLDEVTV---DLDVLARADLLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred EEeeeeEe---ehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc
Confidence 79999999 99988999999999988875 5 999999764
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=75.24 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=37.8
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecC
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtP 241 (276)
++++|.+|||||||+|.|.+.. ..++. +...+ +|.....+.......++|||
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~----------~~~~~--------------~~~~~----~t~~~~~~~~~~~~~~~D~~ 53 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK----------KLART--------------SKTPG----KTQLINFFNVNDKFRLVDLP 53 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----------ceeee--------------cCCCC----cceeEEEEEccCeEEEecCC
Confidence 6899999999999999999522 11111 11122 34444555555677899999
Q ss_pred CCCCC
Q 023887 242 GFNQP 246 (276)
Q Consensus 242 g~~~~ 246 (276)
|+...
T Consensus 54 g~~~~ 58 (170)
T cd01876 54 GYGYA 58 (170)
T ss_pred Ccccc
Confidence 98433
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-07 Score=78.98 Aligned_cols=61 Identities=33% Similarity=0.318 Sum_probs=40.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec--CCCcEEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL--SGGGYLA 238 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~--~~~~~ii 238 (276)
.++++|+||||||||+|+|.|.. .+.+|.+..+.. ++|.....+.. .....++
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~------------~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~l~l~ 57 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG------------HEEEGAAPTGVV-------------ETTMKRTPYPHPKFPNVTLW 57 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC------------CCCCCccccCcc-------------ccccCceeeecCCCCCceEE
Confidence 58999999999999999999955 344444433211 13333333332 2367899
Q ss_pred ecCCCCCC
Q 023887 239 DTPGFNQP 246 (276)
Q Consensus 239 DtPg~~~~ 246 (276)
||||+...
T Consensus 58 DtpG~~~~ 65 (197)
T cd04104 58 DLPGIGST 65 (197)
T ss_pred eCCCCCcc
Confidence 99999543
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-08 Score=88.54 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|..+.+.+.+.+.++.+.| +|+++|++
T Consensus 192 ~lllLDEPts---gLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 192 TLYILDEPTT---GLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred cEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5699999999 999999999999999998776 99999986
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=83.87 Aligned_cols=60 Identities=35% Similarity=0.500 Sum_probs=44.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE--EEecC-CCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--~~~~~-~~~~ 236 (276)
-.++++|+||||||||.|-+.| .+++.+|.+. |||++-. .+.-+ -+..
T Consensus 73 L~vavIG~PNvGKStLtN~mig-------------------------~kv~~vS~K~----~TTr~~ilgi~ts~eTQlv 123 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIG-------------------------QKVSAVSRKV----HTTRHRILGIITSGETQLV 123 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhC-------------------------Cccccccccc----cceeeeeeEEEecCceEEE
Confidence 4699999999999999999998 4577777665 4665433 33322 2568
Q ss_pred EEecCCCCCCCC
Q 023887 237 LADTPGFNQPSL 248 (276)
Q Consensus 237 iiDtPg~~~~~l 248 (276)
++||||...++.
T Consensus 124 f~DTPGlvs~~~ 135 (379)
T KOG1423|consen 124 FYDTPGLVSKKM 135 (379)
T ss_pred EecCCcccccch
Confidence 999999976664
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=71.39 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|.+++++|++|+|||||+|+|.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 5689999999999999999999853
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-08 Score=94.80 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+..+|+....+..-+..+ .|.+++++|+||+||||||++|+...
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~ 130 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQ 130 (582)
T ss_pred eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcC
Confidence 45677788777777666665 89999999999999999999999843
|
|
| >PRK00276 infA translation initiation factor IF-1; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-07 Score=67.18 Aligned_cols=59 Identities=27% Similarity=0.305 Sum_probs=45.4
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-+|.+ .|..+ +|..+.|+++|+|++.+..|.|||+|.+++...++.+|.|.
T Consensus 9 ~~G~Vi~~~~~~~y~V~~~-~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv 68 (72)
T PRK00276 9 MEGTVVEALPNAMFRVELE-NGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRIT 68 (72)
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 5688888856745 77544 78899999999999777889999999999543334566654
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.1e-07 Score=80.55 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=33.4
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.. +|++||+.
T Consensus 190 ~illlDEPt~---~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~ 229 (251)
T cd03273 190 PMYILDEVDA---ALDLSHTQNIGRMIKTHFKGSQFIVVSLKE 229 (251)
T ss_pred CEEEEeCCCc---CCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5689999999 999999999999999986532 99999973
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=80.80 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|+||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999965
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-07 Score=82.91 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=81.8
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++.++..+ .|++.++||.||+|||-+-+++.|... ||| ..+.-...++..++-.++++ .+.|-.-..++
T Consensus 22 ~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k-------dnW-~vTADR~Rf~~idLL~L~Pr-~RRk~ig~~is 92 (330)
T COG4170 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-------DNW-RVTADRMRFDDIDLLRLSPR-ERRKLVGHNVS 92 (330)
T ss_pred eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc-------cce-EEEhhhcccccchhhcCChH-Hhhhhhccchh
Confidence 456666666 899999999999999999999999652 222 33444444555544444433 12233334555
Q ss_pred EEecCCC-------------------------------------------------------------------------
Q 023887 228 LLPLSGG------------------------------------------------------------------------- 234 (276)
Q Consensus 228 ~~~~~~~------------------------------------------------------------------------- 234 (276)
|++|++.
T Consensus 93 MIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 93 MIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehh
Confidence 5555432
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++|.|+|+. ++++.++.++..++..+.+. + |++++||+
T Consensus 173 ~AnqPrLLIADEPTN---~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl 219 (330)
T COG4170 173 LANQPRLLIADEPTN---SMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219 (330)
T ss_pred hccCCceEeccCCCc---ccCccHHHHHHHHHHHhhccCCceEEEEcccH
Confidence 269999999 89999999999999999875 4 99999996
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-07 Score=98.38 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=42.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.++++++.+ +|+.+|++|+.|+||||||.+|+|+. +..+|++.++|.
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm------------~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM------------PKLSGSVAVNGS 583 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc------------ccccceEEEcCe
Confidence 688888887 89999999999999999999999988 788888877664
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.4e-07 Score=79.28 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=35.0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.| +|++||+.
T Consensus 178 p~~lllDEPt~---~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~ 219 (247)
T cd03275 178 APFFVLDEVDA---ALDNTNVGKVASYIREQAGPNFQFIVISLKE 219 (247)
T ss_pred CCEEEEecccc---cCCHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence 35689999999 999999999999999998755 99999984
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-07 Score=86.24 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=31.0
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
|++|+|.. .||-...-...+.++.+.+.. .+++-||+
T Consensus 477 YllDEPSA---~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 477 YLLDEPSA---YLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred EEecCchh---hccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 89999999 898777777788888888753 89999986
|
|
| >CHL00010 infA translation initiation factor 1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=67.03 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=45.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-++.+ .|..+ +|..+.|+++|+|++.+..|+|||+|.+++...++.+|.|.
T Consensus 9 ~~G~Vik~lg~~~y~V~~~-~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii 68 (78)
T CHL00010 9 MEGLVTESLPNGMFRVRLD-NGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRII 68 (78)
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 5788888854454 77443 78899999999999877889999999999644345566654
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-07 Score=83.85 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|.|.|..
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999843
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=81.36 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|.+|+||||++|.|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999954
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-06 Score=86.99 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=45.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEe--cCCCcEE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYL 237 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~--~~~~~~i 237 (276)
.+++|+|++|+||||++|.|+|... ..++ ....+||+...... -.....+
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekv-------------------------f~vs---s~~~~TTr~~ei~~~idG~~L~V 170 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVK-------------------------FSTD---AFGMGTTSVQEIEGLVQGVKIRV 170 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcccc-------------------------cccc---CCCCCceEEEEEEEEECCceEEE
Confidence 3699999999999999999999541 1111 11223554322221 1235689
Q ss_pred EecCCCCCCCCChhhHHHHHHHHH
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
+||||+.....+....+++...+.
T Consensus 171 IDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 171 IDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred EECCCCCccccchHHHHHHHHHHH
Confidence 999999776655433344444443
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-07 Score=79.05 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=29.3
Q ss_pred CCcEEEecCCCCCCCCChhhHHH-HHHHHHHHhhc---c--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQS-LAQTFPEVCAV---G--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~-l~~~f~ei~~~---~--ii~~~H~~ 275 (276)
+..+++|||+- ++|..+... +.+.+..+.+. + ++++||+.
T Consensus 109 ~slvllDE~~~---gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 109 RSLVLIDEFGK---GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CcEEEeccccC---CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 45689999999 888765444 35677777653 2 89999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-07 Score=74.46 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||+- ++|..+...+.+.+.+....+ ++++||+.
T Consensus 99 ~~~llllDEp~~---gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDR---GLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 346799999999 999988899999888876554 89999975
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-07 Score=81.61 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=61.8
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc-------
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH------- 221 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~------- 221 (276)
.+++++.. .|+.++|+|+||+||||+++.+.+.... +...-+.+....++.+...-...+.......+.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e 95 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM---AQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE 95 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH---HHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH
Confidence 34444444 5689999999999999999998732100 000011122333332211111100000000000
Q ss_pred e--eeeEEEEecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhcc--eEEEeeeC
Q 023887 222 T--TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 222 t--t~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+.-....+..+++|||+- +.+..+...+ .+.+..+.+.+ ++++||+.
T Consensus 96 ~~~~~~il~~~~~~~lvllDE~~~---gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 96 MSETAYILDYADGDSLVLIDELGR---GTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHhcCCCcEEEeccccC---CCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 0 000000112346789999999 8877665544 44566776666 99999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=76.02 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=33.7
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
+.|++|+|-. +|.+..+-++...+.++.+.| +|++||.
T Consensus 148 GiYiLDEPEa---~LSp~RQlella~l~~la~sGaQ~IiATHS 187 (233)
T COG3910 148 GIYILDEPEA---ALSPSRQLELLAILRDLADSGAQIIIATHS 187 (233)
T ss_pred ceEEecCccc---cCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3389999999 899888888999999999987 9999995
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=68.84 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|++|+|||||+|.+.+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.2e-07 Score=89.02 Aligned_cols=122 Identities=21% Similarity=0.144 Sum_probs=77.5
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec-ccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~~~~vs~ 214 (276)
+.+.+.-.. ..-++++++.+ +|+.+.+.|+||||||||+++|+|. ++.-+|+|.+. +.++--++.
T Consensus 396 ~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL------------WP~g~G~I~~P~~~~~lflpQ 463 (604)
T COG4178 396 ENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL------------WPWGSGRISMPADSALLFLPQ 463 (604)
T ss_pred eeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc------------CccCCCceecCCCCceEEecC
Confidence 444444333 23467777777 8999999999999999999999994 46666666544 222222332
Q ss_pred ccCCCCceeeeEEEEecCC----------------------------------------------------CcEEEecCC
Q 023887 215 KSGRGKHTTRHVSLLPLSG----------------------------------------------------GGYLADTPG 242 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~----------------------------------------------------~~~iiDtPg 242 (276)
++-....+-+..-.||... +..++||-+
T Consensus 464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 2222222223222333222 227999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhc-ceEEEeee
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAV-GLLYMIHM 274 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~-~ii~~~H~ 274 (276)
. .+|...+..+.+.+++-... .+|-+.|-
T Consensus 544 s---ALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 544 S---ALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred h---ccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 9 99988888888877774333 38888884
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=75.00 Aligned_cols=43 Identities=5% Similarity=-0.069 Sum_probs=35.3
Q ss_pred cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc---c--eEEEeeeCC
Q 023887 231 LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV---G--LLYMIHMLH 276 (276)
Q Consensus 231 ~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~---~--ii~~~H~~~ 276 (276)
..+..+++|||.. ++|......+.+.+.++... + +++++|+++
T Consensus 130 ~~p~illlDEP~~---glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 130 MESPFRCLDEFDV---FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred cCCCEEEecCccc---ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 3567799999999 99999999999999887542 2 888889874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=83.82 Aligned_cols=26 Identities=46% Similarity=0.556 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|-+++++|++|||||||+|.|.+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~ 227 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD 227 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999999853
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-07 Score=81.64 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.0
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcC
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
....+.++|+|+||+|||||++.+.+
T Consensus 27 ~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 27 DPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred cCCceEEEEECCCCCChHHHHHHHHH
Confidence 33447899999999999999999854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=70.44 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHcCCC
Q 023887 163 VIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 163 ~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|.+|||||||+|.|.+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~ 21 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR 21 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc
Confidence 579999999999999999843
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-07 Score=72.51 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=37.7
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++++++.+ +|+.++|+|+||+|||||++++. +|++.++|.++...+.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------------------~G~i~~~g~di~~~~~ 52 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI------------------KRKHRLVGDDNVEIRE 52 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------------------CCeEEEeeEeHHHhhh
Confidence 44555556 67999999999999999999986 2678888888877654
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.5e-06 Score=80.76 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|+|.+..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~ 213 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD 213 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 679999999999999999999843
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-06 Score=83.23 Aligned_cols=80 Identities=31% Similarity=0.347 Sum_probs=48.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE--EecC-CC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLS-GG 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~--~~~~-~~ 234 (276)
.|-+++++|.+|||||||+|.|.+... ..++..++ +|+.... +... ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-------------------------a~v~~~~g----tT~d~~~~~i~~~g~~ 264 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-------------------------AIVTDIAG----TTRDVIEEHINLDGIP 264 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------cccCCCCC----cccccEEEEEEECCeE
Confidence 356899999999999999999998531 11222233 4433221 2222 24
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
..++||||++.+. +..+...+...+..+....
T Consensus 265 i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD 296 (449)
T PRK05291 265 LRLIDTAGIRETD-DEVEKIGIERSREAIEEAD 296 (449)
T ss_pred EEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCC
Confidence 5789999996432 2333344555666666554
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=81.66 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=38.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eEEEEecCC--CcE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HVSLLPLSG--GGY 236 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~~~~~~~~--~~~ 236 (276)
-|+|||.||||||||||+|.+.. . .++..++ ||+ ...++.... ...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-------------------------~-~vs~~p~----TT~~p~~Giv~~~~~~~i~ 210 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-------------------------P-KVADYPF----TTLVPNLGVVRVDDERSFV 210 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-------------------------c-cccCCCC----CccCcEEEEEEeCCCcEEE
Confidence 59999999999999999999843 1 2343444 553 334444432 368
Q ss_pred EEecCCCCC
Q 023887 237 LADTPGFNQ 245 (276)
Q Consensus 237 iiDtPg~~~ 245 (276)
++||||+..
T Consensus 211 ~vDtPGi~~ 219 (390)
T PRK12298 211 VADIPGLIE 219 (390)
T ss_pred EEeCCCccc
Confidence 999999954
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-07 Score=88.54 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=39.9
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-ceeeccccccccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEVS 213 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~~~~vs 213 (276)
++++++.+ +|+.++|+|+||+||||||+ .+.. .|++| +|.++|.++...+
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~------------~~~sGg~I~ldg~~~~~~~ 73 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR------------KFSEGYEFFLDATHSFSPN 73 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC------------CCCCCCEEEECCEECCCCC
Confidence 45555555 79999999999999999999 5544 67777 6999998886643
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=74.71 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++..+++|||+. ++|..+...+ ...+..+.+. + ++++||+.
T Consensus 78 ~~~llllDEp~~---g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 78 ENSLVLLDELGR---GTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred CCeEEEEecCCC---CCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 346799999999 9998766665 4556777663 5 89999975
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.9e-06 Score=71.32 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=35.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.+ +|++||+.
T Consensus 116 ~p~llilDEp~~---~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 116 PSPFYVLDEIDA---ALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 346689999999 999989999999999987765 99999985
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=72.37 Aligned_cols=22 Identities=50% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEEecCCCChhHHHHHHcCCC
Q 023887 162 TVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|+|+|..++|||||||+|+|..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 6899999999999999999965
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=83.49 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=82.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.+.++++.+ +|++++|.|--|+|+|=|+++|.|.. ++.+|+|.++|+++.--++... ....+.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~------------~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR------------PASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC------------cCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 367788877 89999999999999999999999955 7889999999987654332211 111122
Q ss_pred EEecCC--------------------------------------------------------------------------
Q 023887 228 LLPLSG-------------------------------------------------------------------------- 233 (276)
Q Consensus 228 ~~~~~~-------------------------------------------------------------------------- 233 (276)
+++-+.
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 222111
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|+|+- ++|--.+.++.+++.++.++| |+++|-++
T Consensus 418 ~~p~vLilDEPTR---GIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 418 TDPKVLILDEPTR---GIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred cCCCEEEECCCCc---CcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 1179999999 999889999999999999998 77777654
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.6e-06 Score=74.06 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=41.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC------C
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS------G 233 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~------~ 233 (276)
..++++|+.++|||||||.|.|... +..++.-. ..+|+.+-+.... .
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~---------------------~f~~~~~~------~~~T~gi~~~~~~~~~~~~~ 60 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLS---------------------GFDVMDTS------QQTTKGIWMWSVPFKLGKEH 60 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC---------------------CeEecCCC------CCCccceEEEeccccCCCcc
Confidence 4789999999999999999999521 12222111 2266655544332 3
Q ss_pred CcEEEecCCCCCCCCC
Q 023887 234 GGYLADTPGFNQPSLL 249 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~ 249 (276)
..+++||||+......
T Consensus 61 ~v~~lDteG~~~~~~~ 76 (224)
T cd01851 61 AVLLLDTEGTDGRERG 76 (224)
T ss_pred eEEEEecCCcCccccC
Confidence 5689999999655543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-06 Score=70.55 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++|.+|||||||+|.|.+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-06 Score=71.48 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|+|.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999843
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=75.80 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc--------ccccccccccCCCCce
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------QRVGEVSTKSGRGKHT 222 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------~~~~~vs~~~g~gk~t 222 (276)
++++.+ +|++++|.|+||+||||+++.+.+.. +.+..|...... +-...+...+......
T Consensus 23 ~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-----------~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~ 91 (222)
T cd03287 23 DIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-----------IMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGM 91 (222)
T ss_pred eEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-----------HHHhCCCEEEcCceEEeccceEEEEecCcccccccc
Confidence 333334 57899999999999999999998832 144555432221 0000010000000000
Q ss_pred eeeE-------EEEe--cCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 223 TRHV-------SLLP--LSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 223 t~~~-------~~~~--~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+.. .++. .....+|+||||- +.+..+...+ ...+..+.+. + ++++||+.
T Consensus 92 StF~~e~~~~~~il~~~~~~sLvllDE~~~---gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 92 STFMVELSETSHILSNCTSRSLVILDELGR---GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEccCCC---CCChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 0000 0000 0134589999998 6655444443 4566666665 4 89999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-06 Score=80.39 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|+|.+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~ 221 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEAR 221 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999854
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.6e-07 Score=86.73 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=39.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+..++.....+.+..+.+ +|++++++|+||+||||+|+++.+..
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 355667777667777777776 89999999999999999999999976
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-06 Score=79.42 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+..++|+|.||||||||+|+|.+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~ 45 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ 45 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc
Confidence 56789999999999999999998854
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-06 Score=80.95 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.|.+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~ 23 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR 23 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-06 Score=75.90 Aligned_cols=94 Identities=23% Similarity=0.230 Sum_probs=49.4
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecC
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtP 241 (276)
++|+|.||||||||+|+|.+... .+..+.-+..+|..|.+.+.+.+...+....+- ...++ ....++|+|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~-------~k~~~--~~i~lvD~p 70 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKP-------KKIVP--ATIEFVDIA 70 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCC-------ceeee--eEEEEEECC
Confidence 58999999999999999999652 122222233355556655554433222211110 00010 124678999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 242 GFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 242 g~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
|+.... .. ...--.+.+..++...
T Consensus 71 Gl~~~a-~~-~~glg~~fL~~i~~~D 94 (274)
T cd01900 71 GLVKGA-SK-GEGLGNKFLSHIREVD 94 (274)
T ss_pred CcCCCC-ch-hhHHHHHHHHHHHhCC
Confidence 995322 11 2222234555566554
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.3e-06 Score=76.49 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=42.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE--EEecCC-Cc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLSG-GG 235 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--~~~~~~-~~ 235 (276)
..++.+.|+||||||||++.|.+.. -+++ +.+- ||..+. .+...+ ..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-----------------------pEvA---~YPF----TTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-----------------------PEVA---PYPF----TTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-----------------------CccC---CCCc----cccceeEeeeecCCceE
Confidence 4689999999999999999999964 2233 2332 665443 443333 45
Q ss_pred EEEecCCCCCCCCCh
Q 023887 236 YLADTPGFNQPSLLK 250 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~ 250 (276)
.++||||+-.-.++.
T Consensus 218 QvIDTPGlLDRPl~E 232 (346)
T COG1084 218 QVIDTPGLLDRPLEE 232 (346)
T ss_pred EEecCCcccCCChHH
Confidence 799999995555543
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-06 Score=75.66 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|+|||||+|.|.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.4e-06 Score=79.63 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=77.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc---cCCCCcee
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK---SGRGKHTT 223 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~---~g~gk~tt 223 (276)
..++.+ +.+ +|++++|+|+||+|||||+++|.+.. +|+.|.|.+.|++-.++.+. .-......
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~------------~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~ 213 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT------------SADLNVIALIGERGREVREFIERDLGPEGLK 213 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEEecCCccHHHHHHhhcChhhhc
Confidence 346666 444 89999999999999999999999955 88999999876655443311 00111134
Q ss_pred eeEEEEecCCCc--------------------------EEEe-----------------c-CCCCCCCCChhhHHHHHHH
Q 023887 224 RHVSLLPLSGGG--------------------------YLAD-----------------T-PGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 224 ~~~~~~~~~~~~--------------------------~iiD-----------------t-Pg~~~~~l~~~~~~~l~~~ 259 (276)
+.+.++.....- +++| + |+. .++++.....+.++
T Consensus 214 r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~--~G~dp~~~~~l~~l 291 (438)
T PRK07721 214 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTT--KGYTPSVFAILPKL 291 (438)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCcc--ccCCHHHHHHHHHH
Confidence 455555543221 5667 3 333 36777778888899
Q ss_pred HHHHhh--cc-------eEEEeeeCC
Q 023887 260 FPEVCA--VG-------LLYMIHMLH 276 (276)
Q Consensus 260 f~ei~~--~~-------ii~~~H~~~ 276 (276)
+.++.. .| +++.+||++
T Consensus 292 ler~~~~~~GsIT~~~TVlv~~hdm~ 317 (438)
T PRK07721 292 LERTGTNASGSITAFYTVLVDGDDMN 317 (438)
T ss_pred HHHhcCCCCCCeeeEEEEEEECCCCC
Confidence 988873 34 588899874
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=84.63 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.8
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|++|+|.. .||-...-...+.++++.+.+ ++++.|||
T Consensus 235 Y~FDEpsS---yLDi~qRl~~ar~Irel~~~~k~ViVVEHDL 273 (591)
T COG1245 235 YFFDEPSS---YLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273 (591)
T ss_pred EEEcCCcc---cccHHHHHHHHHHHHHHhccCCeEEEEechH
Confidence 89999998 898777778889999999864 99999997
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.7e-06 Score=76.94 Aligned_cols=96 Identities=24% Similarity=0.225 Sum_probs=51.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
.+++|+|.||||||||+|+|.+.. ..+..+..+.-+|..|.+.+.+.+...++.... +. ..++ ....++|
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~--p~-----~~~~--a~i~lvD 72 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK--PK-----KIVP--ATIEFVD 72 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcC--Cc-----cccC--ceEEEEE
Confidence 579999999999999999999965 222222333335555555555433222221110 00 0000 1346889
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||+.... . ....--.+.+..+++..
T Consensus 73 ~pGL~~~a-~-~g~glg~~fL~~i~~aD 98 (364)
T PRK09601 73 IAGLVKGA-S-KGEGLGNQFLANIREVD 98 (364)
T ss_pred CCCCCCCC-C-hHHHHHHHHHHHHHhCC
Confidence 99995322 1 12222245566666655
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=69.10 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|++|||||||+|.|.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999984
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-06 Score=70.88 Aligned_cols=20 Identities=50% Similarity=0.773 Sum_probs=18.1
Q ss_pred EEecCCCChhHHHHHHcCCC
Q 023887 164 IVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~ 183 (276)
|+|++|||||||+|+|.+..
T Consensus 1 iiG~~~~GKStll~~l~~~~ 20 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK 20 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC
Confidence 58999999999999999853
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.2e-05 Score=66.40 Aligned_cols=23 Identities=52% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.|.+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-06 Score=67.74 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=0.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
+.++++|.+|||||||+|.|.|... .......+...... ++|
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~-------------------------------------~~~~~~~v~~~~~~-~iD 43 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT-------------------------------------LARKTQAVEFNDKG-DID 43 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc-------------------------------------cCccceEEEECCCC-ccc
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
|||. .... .+.....+..+.... ++++
T Consensus 44 tpG~---~~~~--~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 44 TPGE---YFSH--PRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred CCcc---ccCC--HHHHHHHHHHHhcCCEEEEE
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.5e-06 Score=67.32 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++++|||++|||||||+++|.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999999854
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=74.37 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|+|||||||.|.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999965
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=98.07 E-value=9e-06 Score=66.21 Aligned_cols=19 Identities=47% Similarity=0.796 Sum_probs=17.5
Q ss_pred EEecCCCChhHHHHHHcCC
Q 023887 164 IVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~ 182 (276)
|+|.+|||||||+|.+.+.
T Consensus 1 l~G~~~~GKssl~~~~~~~ 19 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA 19 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC
Confidence 5899999999999999984
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.4e-06 Score=67.04 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.|.+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 6899999999999999999974
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=81.95 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=35.4
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
||+|||+- +|...+.+.|.+.+..+...| ++++.|+|+
T Consensus 847 YiLDEPTT---GLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd 886 (935)
T COG0178 847 YILDEPTT---GLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886 (935)
T ss_pred EEeCCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 79999999 998888999999999999998 999999985
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.05 E-value=5e-06 Score=71.44 Aligned_cols=46 Identities=28% Similarity=0.303 Sum_probs=37.0
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.+-|.+.+ +|+.++|+|++|+|||||+++|++.. +|+.|.+.+++.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i------------~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI------------PPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEECCc
Confidence 33444444 78999999999999999999999965 788888887654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=77.45 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~ 62 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRR 62 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcC
Confidence 479999999999999999999843
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=76.42 Aligned_cols=64 Identities=36% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC--CCcE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGY 236 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~--~~~~ 236 (276)
.-.+|++|.||+|||||||+|.|.... ++.+ -+++.+ +||....-|+-+ ++..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~----------d~~a-------A~tGv~--------etT~~~~~Y~~p~~pnv~ 89 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHE----------DEGA-------APTGVV--------ETTMEPTPYPHPKFPNVT 89 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TT----------STTS---------SSSH--------SCCTS-EEEE-SS-TTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCC----------CcCc-------CCCCCC--------cCCCCCeeCCCCCCCCCe
Confidence 357999999999999999999996420 1110 111111 255555555554 4778
Q ss_pred EEecCCCCCCC
Q 023887 237 LADTPGFNQPS 247 (276)
Q Consensus 237 iiDtPg~~~~~ 247 (276)
+-|-||+..+.
T Consensus 90 lWDlPG~gt~~ 100 (376)
T PF05049_consen 90 LWDLPGIGTPN 100 (376)
T ss_dssp EEEE--GGGSS
T ss_pred EEeCCCCCCCC
Confidence 88999995443
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.2e-05 Score=63.40 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|.+|+|||||+|.|.+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~ 26 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEE 26 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 368999999999999999999853
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=69.14 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|+||||+|++|+|..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 479999999999999999999964
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=68.66 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=35.1
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c---eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G---LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~---ii~~~H~~ 275 (276)
++..+++|||.. ++|......+.+.+.++.+. + ++++||++
T Consensus 148 ~p~llllDEP~~---~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~ 192 (213)
T cd03277 148 RCPFRVVDEINQ---GMDPTNERKVFDMLVETACKEGTSQYFLITPKL 192 (213)
T ss_pred CCCEEEEecccc---cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh
Confidence 456799999999 99999999999999998765 3 79999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=66.29 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=55.4
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHHH----HHHHHhhh---cCceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLN----TWKSRLHT---WGYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~~~~----~~~~~~~~---~~~~~~~~s 143 (276)
..++++|.+++|+|+..|...... .+.+..+...+. |+++|+||+|+.+++... .+...+.. .+++++.+|
T Consensus 102 ~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS 180 (203)
T cd01888 102 SGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPIS 180 (203)
T ss_pred HhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 357899999999999865433222 234444454555 578899999998754332 22222222 245678889
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.|...+
T Consensus 181 A~~g~gi~~L~~~l 194 (203)
T cd01888 181 AQLKYNIDVLLEYI 194 (203)
T ss_pred CCCCCCHHHHHHHH
Confidence 88888888877655
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=62.23 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEecCCCChhHHHHHHcCCC
Q 023887 164 IVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|++|+|||||+|.|.+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~ 20 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE 20 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc
Confidence 58999999999999999854
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=72.92 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...+.++|.+|+|||||+|+|.+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~ 63 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGE 63 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcc
Confidence 34567799999999999999999643
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-06 Score=73.62 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE---
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--- 226 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~--- 226 (276)
+++++.. +++.++|.|+|++||||+++.+...... +-..-+-+..+.++.+...-...+...+.......+..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l---a~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~ 97 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM---AQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVEL 97 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH---HHcCCccCccccEeccccEEEEecCcccccccCcchHHHHH
Confidence 3444444 4789999999999999999988764210 00000112222222221111111111100000000000
Q ss_pred ----EEE--ecCCCcEEEecCCCCCCCCChhhHHHHHHH-HHHHhhc-c--eEEEeeeC
Q 023887 227 ----SLL--PLSGGGYLADTPGFNQPSLLKVTKQSLAQT-FPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 227 ----~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~-f~ei~~~-~--ii~~~H~~ 275 (276)
.++ ...+..+++||||- +.+..+...+... +..+.+. + ++++||++
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~---Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 98 SETANILRHATPDSLVILDELGR---GTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccC---CCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 000 01235689999999 8877776777666 6777764 5 89999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.3e-05 Score=71.71 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 153 l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
|...+ .|+.++|+|++|+|||||+|+|++.. +|..|.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~------------~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI------------PKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC------------CccccEEEEc
Confidence 34444 68899999999999999999999965 6777766664
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.2e-06 Score=80.44 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-cccc-------------------cccccCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGE-------------------VSTKSGR 218 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~-------------------vs~~~g~ 218 (276)
..+++++|++|.||||+++.+.+.. .|..|-+.++.. +++. ....+|+
T Consensus 390 ~sRi~~vg~ng~gkst~lKi~~~~l------------~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 390 DSRISRVGENGDGKSTLLKILKGDL------------TPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhheeccCchhHHHHHHHHhccC------------CcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 4689999999999999999999977 677776644321 1110 0001111
Q ss_pred -----------------------------CCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceE
Q 023887 219 -----------------------------GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLL 269 (276)
Q Consensus 219 -----------------------------gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii 269 (276)
+|..-....+..+.+..+++|||+. .||-.+.+.|.+.+..|.- ||+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN---hLD~dsl~AL~~Al~~F~G-GVv 533 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN---HLDRDSLGALAKALKNFNG-GVV 533 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc---cccHHHHHHHHHHHHhcCC-cEE
Confidence 1111111111222334489999999 8887777777777666542 499
Q ss_pred EEeeeC
Q 023887 270 YMIHML 275 (276)
Q Consensus 270 ~~~H~~ 275 (276)
++|||.
T Consensus 534 ~VSHd~ 539 (582)
T KOG0062|consen 534 LVSHDE 539 (582)
T ss_pred EEECcH
Confidence 999985
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=3e-06 Score=82.12 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=63.5
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
..++.+....+|++++|+|+||+|||||+|+|.+.. .++.+.+...|++ ++|++..+.
T Consensus 146 ~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~------------~~~v~vi~~iGer----------grev~e~~~ 203 (434)
T PRK08472 146 KSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC------------LAPIKVVALIGER----------GREIPEFIE 203 (434)
T ss_pred HHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc------------CCCEEEEEeeCcc----------chhHHHHHH
Confidence 356666323389999999999999999999999855 4444444444443 333332211
Q ss_pred EEecCC---CcEEE-----ecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeee
Q 023887 228 LLPLSG---GGYLA-----DTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHM 274 (276)
Q Consensus 228 ~~~~~~---~~~ii-----DtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~ 274 (276)
..+.. +..++ |+|+.+..... ....+.++|++- ...++++.-+
T Consensus 204 -~~l~~~l~~tvvV~atsddsp~~R~~~~~--~a~~iAEyFrd~-G~~Vll~~Ds 254 (434)
T PRK08472 204 -KNLGGDLENTVIVVATSDDSPLMRKYGAF--CAMSVAEYFKNQ-GLDVLFIMDS 254 (434)
T ss_pred -HHhcCcccceEEEEECCCCCHHHhhHHHH--HHHHHHHHHHHc-CCCEEEeccc
Confidence 11121 55677 88999766644 367788888873 2336655433
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.8e-06 Score=72.76 Aligned_cols=23 Identities=52% Similarity=0.767 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++||+||.|||||+|.|....
T Consensus 48 NIMVVgqSglgkstlinTlf~s~ 70 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSH 70 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHH
Confidence 68999999999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 276 | ||||
| 1t9h_A | 307 | The Crystal Structure Of Yloq, A Circularly Permute | 9e-33 | ||
| 1u0l_A | 301 | Crystal Structure Of Yjeq From Thermotoga Maritima | 5e-27 | ||
| 2yv5_A | 302 | Crystal Structure Of Yjeq From Aquifex Aeolicus Len | 1e-19 | ||
| 2rcn_A | 358 | Crystal Structure Of The Ribosomal Interacting Gtpa | 1e-17 | ||
| 2ykr_W | 350 | 30s Ribosomal Subunit With Rsga Bound In The Presen | 1e-17 | ||
| 4a2i_V | 277 | Cryo-Electron Microscopy Structure Of The 30s Subun | 1e-12 |
| >pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted Gtpase Length = 307 | Back alignment and structure |
|
| >pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima Length = 301 | Back alignment and structure |
|
| >pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus Length = 302 | Back alignment and structure |
|
| >pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq From The Enterobacterial Species Salmonella Typhimurium Length = 358 | Back alignment and structure |
|
| >pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of Gmppnp Length = 350 | Back alignment and structure |
|
| >pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In Complex With The Yjeq Biogenesis Factor Length = 277 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 2e-85
Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 26/247 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++TG +LC +R + ++ VGD+V + G+IENV R + P VANV
Sbjct: 28 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANV 85
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT--W 135
D ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L +
Sbjct: 86 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSG 145
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 146 LYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NPGL---------- 193
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 194 ----------KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243
Query: 256 LAQTFPE 262
L F E
Sbjct: 244 LKHYFKE 250
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 6e-84
Identities = 81/252 (32%), Positives = 127/252 (50%), Gaps = 29/252 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ + + C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+
Sbjct: 27 DESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPI 84
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS 130
NVD +L+FS QP L RFLV E+ I + + K++L++++ + +
Sbjct: 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+ SP
Sbjct: 145 DYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI--SPEL----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
R E+S GRGKHTTRHV L+ GG +ADTPGF+
Sbjct: 198 ---------------GLRTNEISEHLGRGKHTTRHVELIHT-SGGLVADTPGFSSLEFTD 241
Query: 251 VTKQSLAQTFPE 262
+ ++ L TFP+
Sbjct: 242 IEEEELGYTFPD 253
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 7e-82
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 30/247 (12%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G + R + K K ++ GD V +D IE V +R ++ P VANVD
Sbjct: 26 DGKTYRGIPRGKVLK-KTKIYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVDR 82
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH---TWG 136
++++ ++ P+ + L LV E + + NK++L++EE + + G
Sbjct: 83 VIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S ++ G+D L+ L ++ GPSGVGKSS+++ L
Sbjct: 143 YDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRL----------------T 186
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQS 255
E+ R EVS K+ RG+HTT V L+P G ++ DTPGF++ V +
Sbjct: 187 G-------EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE 239
Query: 256 LAQTFPE 262
+ F E
Sbjct: 240 VRNYFRE 246
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 3e-67
Identities = 66/251 (26%), Positives = 122/251 (48%), Gaps = 37/251 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV----GSIDWVDRRGMIENVFQRSTEI--------LDPPV 74
V R +++ R ++ GD+VV + + V+ +G++E V +R++ + + P
Sbjct: 69 VHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHERTSVLTRPDFYDGVKPIA 128
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++++ ++ P+L + R+LV E+ + + LNK++L+D+E ++ ++
Sbjct: 129 ANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI 187
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY L S ++ GL L + L + ++ G SGVGKSSL+NAL ++
Sbjct: 188 YRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNAL--LGLQNEI--- 242
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+VS SG G+HTT L GG + D+PG + L +
Sbjct: 243 ----------------LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHL 286
Query: 252 TKQSLAQTFPE 262
+ + Q F E
Sbjct: 287 EPEQITQGFVE 297
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 5e-11
Identities = 37/167 (22%), Positives = 54/167 (32%), Gaps = 37/167 (22%)
Query: 109 PLTLALNKVELVDEEVLNTW-----KSRLHTWGYEP---LFCSVESKLGLDSLLQRLRDQ 160
+ L NK +L+ + V + + G +P S G+ L +
Sbjct: 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157
Query: 161 ----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + + E + V S
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRM-------------------IKEFSDETENVITTSHFP 198
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFP 261
G TT + +PL L DTPG V KQSL P
Sbjct: 199 G----TTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITP 241
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-10
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 47/161 (29%)
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++E P + LNK + D V WK G L + + GL+ ++ ++
Sbjct: 43 MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102
Query: 160 Q------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+I+G VGKS+LIN L
Sbjct: 103 ILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK------------------- 143
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
+ + + G T + + L DTPG
Sbjct: 144 ------NIAKTGDRPG----ITTSQQWVKVGKELELLDTPG 174
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 34/143 (23%)
Query: 109 PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL---RDQTTVIV 165
+ LNKV++ DE+ W G + LL++L R +IV
Sbjct: 48 ETIILLNKVDIADEKTTKKWVEFFKKQGKRVITTH--KGEPRKVLLKKLSFDRLARVLIV 105
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
G GKS++IN L+ +R V + G T+
Sbjct: 106 GVPNTGKSTIINKLKG-------------------------KRASSVGAQPG----ITKG 136
Query: 226 VSLLPLSGGGYLADTPGFNQPSL 248
+ L G + DTPG ++
Sbjct: 137 IQWFSLENGVKILDTPGILYKNI 159
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-09
Identities = 36/168 (21%), Positives = 55/168 (32%), Gaps = 38/168 (22%)
Query: 109 PLTLALNKVELVDEEV----LNTW-KSRLHTWGYEPL---FCSVESKLGLDSLLQRL--- 157
P+ L NK +L+ V L W + G P+ S +G+ +++ +
Sbjct: 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159
Query: 158 -RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+VG + VGKS+ IN + V S
Sbjct: 160 REGGDVYVVGCTNVGKSTFINRIIEEATGKG--------------------NVITTSYFP 199
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTFPE 262
G TT + +PL G L DTPG V + L P+
Sbjct: 200 G----TTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPK 243
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-08
Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 20/164 (12%)
Query: 33 KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST--EILDPPVANVDHLLLLFSM--DQ 88
K I + V + V + D D + M +++ + I+ V L LF +
Sbjct: 19 KDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSK 74
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWG--YEPLF- 141
+ + +F+ E ++ K E + + RL+ +
Sbjct: 75 QEE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 142 CSVESKLGLDSLLQRLRDQTTVIV-GPSGVGKSSL-INALRSSP 183
++ L L L LR V++ G G GK+ + ++ S
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 7/114 (6%)
Query: 53 VDRRGMIENVFQRSTEILDPPVANVDHL--LLLFSMDQPKLEPFALTRFLVEAES----- 105
+D G+++ EI + + +L L+++ D + F L + E
Sbjct: 219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278
Query: 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+P + +NK+++ DEE + + + G P+ S G+D + + +
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 38/134 (28%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L +L+ + T +++G GVGKSS +N+ ++G +
Sbjct: 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNS-------------------LIGEQVV 62
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY---LADTPGFNQPSLLKVTKQSLAQTFP 261
VS ++ + GG+ + DTPG + + L + F
Sbjct: 63 ------RVSPFQA----EGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112
Query: 262 EVCAVGL-LYMIHM 274
+ + LY+ +
Sbjct: 113 VNRTIDVLLYVDRL 126
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 29/102 (28%)
Query: 150 LDSLLQRLRDQTT--VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+ L+ + + G +G GKSS IN LR +
Sbjct: 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--------------------- 96
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGG--YLADTPGFNQPS 247
E + K+G T D PG +
Sbjct: 97 ---EGAAKTGVV-EVTMERHPYKHPNIPNVVFWDLPGIGSTN 134
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 36/122 (29%)
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
R V+VG +G GKS+ N+ ILG K F + T
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNS-------------------ILGRKVFHSGTAAKSIT 65
Query: 215 KS---GRGKHTTRHVSLLPLSGGGYLADTPGFNQPS-----LLKVTKQSLAQTFPEVCAV 266
K + ++ DTPG K + + T P A+
Sbjct: 66 KKCEKRSSSWKETELVVV---------DTPGIFDTEVPNAETSKEIIRCILLTSPGPHAL 116
Query: 267 GL 268
L
Sbjct: 117 LL 118
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 32/86 (37%)
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T +++G GVGKSS +N+ I+G + +
Sbjct: 41 TILVMGKGGVGKSSTVNS-------------------IIGERVV----------SISPFQ 71
Query: 221 HTTRHVSLLPLSGGG---YLADTPGF 243
++ S G + DTPG
Sbjct: 72 SEGPRPVMVSRSRAGFTLNIIDTPGL 97
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 38/105 (36%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+ G VGKSS +NAL +G Q V VS +G TT
Sbjct: 39 VAGRRNVGKSSFMNAL-------------------VG------QNVSIVSDYAG----TT 69
Query: 224 RHVSLLPLSGGGY----LADTPGFNQPSLL-----KVTKQSLAQT 259
+ L DTPG + L + ++ +
Sbjct: 70 TDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 158 RDQTTVIVGPSGVGKSSLINALRSS 182
+T V++G SGVG+S + NAL S
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQ 42
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 100.0 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 100.0 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 100.0 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.98 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.84 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.84 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.73 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.73 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.73 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.72 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.72 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.72 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.72 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.71 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.71 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.71 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.7 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.7 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.69 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.69 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.69 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.68 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.68 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.68 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.68 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.68 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.68 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.68 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.67 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.67 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.67 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.67 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.65 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.64 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.64 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.64 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.63 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.62 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.6 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.6 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.6 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.6 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.6 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.59 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.59 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.56 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.56 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.56 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.55 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.54 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.54 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.52 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.48 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.48 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.47 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.47 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.42 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.39 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.35 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.31 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.3 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.26 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.26 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.1 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.09 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.07 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.06 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.06 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.06 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.97 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.94 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.93 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.89 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.85 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.82 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.82 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.78 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.76 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.76 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 98.74 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.72 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.7 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 98.68 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.68 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 98.67 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 98.66 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.66 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.64 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.64 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 98.63 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.61 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.6 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.59 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.58 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.58 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 98.58 | |
| 1ah9_A | 71 | IF1, initiation factor 1; ribosome binding, protei | 98.56 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.56 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.56 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.52 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.51 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.47 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 98.47 | |
| 3i4o_A | 79 | Translation initiation factor IF-1; cytoplasm, pro | 98.46 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.46 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.46 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.45 | |
| 1hr0_W | 71 | Translation initiation factor; ribosomal subunit, | 98.43 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.43 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.43 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.42 | |
| 2oqk_A | 117 | Putative translation initiation factor EIF-1A; mal | 98.38 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.38 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.37 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 98.37 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.36 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.36 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.36 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 98.35 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.33 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 98.32 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.32 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 98.32 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.31 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 98.3 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.29 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.28 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 98.28 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.25 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 98.25 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.24 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.23 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.23 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.23 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.23 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 98.22 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 98.22 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 98.22 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.21 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 98.21 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 98.21 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.2 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 98.19 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 98.18 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.16 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.16 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.15 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 98.15 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 98.14 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 98.13 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.13 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.11 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.11 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.11 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.1 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 98.1 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 98.09 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.09 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.08 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 98.07 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.07 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 98.07 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.07 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.05 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.05 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 98.05 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 98.05 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.04 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.04 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 98.02 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 98.01 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 98.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.0 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.0 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.0 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 98.0 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.98 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.97 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 97.97 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 97.97 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.96 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.96 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.96 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.95 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.95 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.94 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.94 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.94 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.94 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.93 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 97.93 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.93 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.93 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.92 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.92 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.92 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.91 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.91 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.91 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 97.9 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.9 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.89 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.88 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 97.88 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.88 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.88 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.88 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.88 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.87 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.87 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.87 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.87 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.86 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.86 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 97.86 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.86 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.86 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.85 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.85 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.85 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.85 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.85 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.85 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 97.85 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.84 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.84 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.84 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 97.84 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.84 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.83 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 97.83 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.83 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.83 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.82 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.82 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.81 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.81 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.81 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 97.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.81 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 97.8 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 97.8 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 97.8 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.8 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 97.8 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.79 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.79 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.78 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.78 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.78 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 97.78 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 97.78 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.78 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.78 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.77 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 97.77 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.77 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 97.77 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.76 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.76 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 97.76 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 97.76 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 97.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.76 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.76 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.75 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.75 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.75 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 97.75 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 97.75 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 97.75 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 97.74 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 97.74 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 97.74 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.74 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 97.73 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.73 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 97.73 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.73 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.72 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.72 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 97.72 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.72 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 97.72 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.72 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.71 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.71 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.71 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 97.71 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.71 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.71 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.7 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.7 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.69 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.69 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 97.69 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.69 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.69 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.68 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 97.68 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 97.68 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.68 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.67 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 97.67 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.66 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.66 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.65 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 97.65 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.65 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.65 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 97.64 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.64 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 97.63 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 97.63 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.63 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.63 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 97.62 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.62 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 97.61 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 97.61 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.61 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.61 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.61 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.61 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.61 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 97.6 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 97.6 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.6 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 97.6 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 97.59 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.59 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 97.59 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 97.58 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 97.58 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 97.58 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.58 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 97.58 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.58 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 97.58 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 97.57 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.57 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.57 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.57 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 97.56 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 97.56 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 97.56 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 97.55 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.55 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 97.55 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.55 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.55 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 97.55 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 97.54 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.54 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.54 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.54 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 97.54 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 97.54 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 97.54 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 97.54 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 97.53 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.53 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.53 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 97.52 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 97.52 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.52 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 97.52 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 97.51 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 97.5 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.5 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 97.49 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 97.49 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 97.48 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.48 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.47 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 97.47 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.45 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 97.44 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.44 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.43 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.43 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.42 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 97.42 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.42 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.54 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 97.42 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.42 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 97.41 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.41 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.4 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.4 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.39 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.39 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 97.39 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 97.38 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 97.38 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 97.38 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 97.36 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.35 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.35 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 97.35 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 97.34 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.34 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.34 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 97.34 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.34 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 97.32 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 97.32 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 97.31 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.31 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.3 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.29 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.29 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 97.29 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.29 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 97.29 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.26 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.25 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 97.25 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.25 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 97.24 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 97.22 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.2 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.19 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.27 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.18 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 97.17 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.17 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 97.16 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.15 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 97.14 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.11 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.08 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 97.07 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 97.07 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 97.07 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.05 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 97.04 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.01 | |
| 1d7q_A | 143 | Translation initiation factor 1A; OB-fold, beta-ba | 97.0 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 97.0 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 97.0 | |
| 1jt8_A | 102 | EIF-1A, probable translation initiation factor 1A; | 96.99 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.98 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.98 | |
| 2dgy_A | 111 | MGC11102 protein; EIF-1A, structural genomics, NPP | 96.98 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 96.96 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.96 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.95 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.95 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.94 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 96.94 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 96.93 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 96.92 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 96.92 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.91 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.91 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.91 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 96.89 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 96.87 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 96.87 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 96.87 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.86 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.85 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.84 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.84 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 96.83 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.83 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.82 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.82 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.82 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 96.81 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 96.81 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 96.8 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.78 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.78 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.77 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 96.73 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.73 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.73 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.72 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 96.71 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.7 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 96.69 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 96.69 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.66 |
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=336.78 Aligned_cols=236 Identities=33% Similarity=0.545 Sum_probs=189.5
Q ss_pred eEEEecCCCCc-eeccCCC--CcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhccccE
Q 023887 3 VIVQQSEPSRT-SDCNDKT--GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (276)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~ 79 (276)
+.|.+. .|.| .|..+.+ |..+.|++||+|++++..|+|||||.++..+ ++.|+|++++||+|.+.|+++||+|+
T Consensus 13 g~vi~~-~~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~ 89 (307)
T 1t9h_A 13 GKIIKA-LSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQ 89 (307)
T ss_dssp EEEEEE-ETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCE
T ss_pred eEEEEE-ECCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCE
Confidence 678888 6777 7766532 7789999999999888889999999998643 45799999999999999999999999
Q ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH----HHHHHHHhhhcCceeEEEecCCccchHHHHh
Q 023887 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 80 vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (276)
+++|+|++.|.++..+++|||+.|+..+++++||+||+||.+++. .+.|...|+++||+++.+|+.++.+++.|..
T Consensus 90 v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 90 AVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 999999999999999999999999999999999999999998754 5788888888999999999988888888877
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
..+|++++|+|+||||||||||+|.|.. .|..|+|. ...+.|+|+|+...++... .+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~------------~~~~G~I~----------~~~~~G~~tt~~~~~~~~~-~g 226 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL------------GLRTNEIS----------EHLGRGKHTTRHVELIHTS-GG 226 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------CCCCCEEEET-TE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc------------ccccccee----------eecCCCcccccHHHHhhcC-CE
Confidence 7899999999999999999999999976 55555544 3345667777766666654 67
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
+++||||+..+++...+.+++...|+++.
T Consensus 227 ~v~dtpg~~~~~l~~lt~e~l~~~f~~~~ 255 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEEEELGYTFPDIR 255 (307)
T ss_dssp EEESSCSCSSCCCTTCCHHHHGGGSHHHH
T ss_pred EEecCCCccccccccCCHHHHHHHHHHHH
Confidence 99999999888876666677877788764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=318.75 Aligned_cols=235 Identities=28% Similarity=0.427 Sum_probs=190.0
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCe------eEEeeecccccccccc-
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDP- 72 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~------~~i~~i~~R~~~~~r~- 72 (276)
|.+.|.+. +|.| .|.++ +|..+.|.+||+++ .|+|||||.++..+ ++. |+|++++||+|.|.||
T Consensus 48 ~~g~Vi~~-~~~~~~v~~~-~g~~~~~~~r~~~~----~~~vGD~V~~~~~~--~~~~~~~~~~~I~~i~~R~~~l~R~~ 119 (358)
T 2rcn_A 48 AEGIVISR-FGMHADVESA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGK--AAAEGVNVKGIVEAVHERTSVLTRPD 119 (358)
T ss_dssp EEEEEEEE-ETTEEEEEET-TSCEEEEEECTTCC----CCCBTCEEEEECBC---------CCEEEEEECCCSCEEEEC-
T ss_pred ceEEEEEE-ECCEEEEEeC-CCcEEEEEecCCCC----CCCCCcEEEEEeCC--CccccccccceEeEEeCCcCcccCcc
Confidence 46788888 7777 77655 57789999999886 39999999998643 223 8999999999999996
Q ss_pred -------hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEE
Q 023887 73 -------PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 73 -------~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~ 142 (276)
++||+|++++|++. .|.++..+++|||+.|+..+++++||+||+||++++. .+.|...|+++||+++.+
T Consensus 120 ~~~~~~~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 120 FYDGVKPIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp ----CEEEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred hhhHHHHHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEE
Confidence 38999999988775 5999999999999999999999999999999998765 567888899999999999
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-ccccceeeccccccccccccCCCCc
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
|+.++.++++|++.++|++++|+|+||||||||||+|+|.. . |..|+|.++ .|+++|
T Consensus 199 Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~------------~~~~~G~I~~~----------~G~g~~ 256 (358)
T 2rcn_A 199 SSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ------------NEILTNDVSNV----------SGLGQH 256 (358)
T ss_dssp BTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCS------------SCCCCC---------------------
T ss_pred ecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhccc------------cccccCCcccc----------CCCCcc
Confidence 99999999999999999999999999999999999999966 6 777777654 234455
Q ss_pred eeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 222 TTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 222 tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+|+...+..+..+..++||||++++++.....+++.+.|+++.+.
T Consensus 257 tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~ 301 (358)
T 2rcn_A 257 TTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDY 301 (358)
T ss_dssp --CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHHHTSGGGGGG
T ss_pred ceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHHHHHHHHHHH
Confidence 666555555555778999999998888777777888888888764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=299.45 Aligned_cols=235 Identities=30% Similarity=0.458 Sum_probs=190.9
Q ss_pred CeeEEEecCCCCc--eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhcccc
Q 023887 1 MRVIVQQSEPSRT--SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (276)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD 78 (276)
|.+.|.+..-|.| .|. .+|..+.|++||++++.+. |+|||||.++..+ ++.|+|+++.+|.+.+.|+.++|+|
T Consensus 7 ~~g~v~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i~er~~~l~r~~~~naD 81 (302)
T 2yv5_A 7 KRGLVVDREAQMIGVYLF--EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVD 81 (302)
T ss_dssp EEEEEEEEETTEEEEEET--TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEECCCSCEEETTEEESCC
T ss_pred eeEEEEEeeCCeEEEEEe--cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEeeCChHHHHhHHHHHhcC
Confidence 3577888845555 444 4577899999999987656 9999999998653 4679999999999999999999999
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEEecCCccchHHHHh
Q 023887 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 79 ~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (276)
++++|+|+..|.++...++++|..++..++|+++|+||+||.++.. .+.+...+++++++++.+|+.++.+++.|..
T Consensus 82 ~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 82 RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh
Confidence 9999999998988988999999999989999999999999988752 5567777788899999999999999999999
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
.++|++++|+|+||||||||+|+|. .. .|.+|+|.+ ..+.|+|+|+....+.....+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g 218 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGS 218 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTE
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCc
Confidence 9999999999999999999999999 76 677777664 335667787776666665678
Q ss_pred EEEecCCCCCCCC-ChhhHHHHHHHHHHH
Q 023887 236 YLADTPGFNQPSL-LKVTKQSLAQTFPEV 263 (276)
Q Consensus 236 ~iiDtPg~~~~~l-~~~~~~~l~~~f~ei 263 (276)
+++||||+..+++ +..+.+++...|+++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~e~l~~~f~~~ 247 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKPREVRNYFREF 247 (302)
T ss_dssp EEESSCCCSSCCGGGTSCGGGGGGGCGGG
T ss_pred EEEECcCcCcCcccccCCHHHHHHHHHHH
Confidence 9999999987776 555456665566643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=244.09 Aligned_cols=236 Identities=29% Similarity=0.472 Sum_probs=185.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhccccE
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~ 79 (276)
|.+.|.+. .|.| .|....++..+.|.++|.|.+....|.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.
T Consensus 11 ~~g~v~~~-~~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~ 87 (301)
T 1u0l_A 11 RRGIVVSF-HSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQ 87 (301)
T ss_dssp EEEEEEEE-ETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCE
T ss_pred eeEEEEEe-eCCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCE
Confidence 36888888 5555 77644336789999999997556779999999876432 34678888899999999999999999
Q ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEEecCCccchHHHHhh
Q 023887 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 80 vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
+++|+|+..|.++...+++++..++..++|+++|+||+||.++.. .++|...+... ++++.+|+.++.+++++...
T Consensus 88 vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 88 VILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp EEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHH
Confidence 999999998887778899999888888999999999999987654 34454444444 78999999999999999988
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceee---ccccccccccccCCCCceeeeEEEEecCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~---~g~~~~~vs~~~g~gk~tt~~~~~~~~~~ 233 (276)
+.|++++++|+||||||||||+|.|.. .|++|+|.+ +|+. +|+....+....
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~------------~~~~G~i~~~~~~g~~-------------~t~~~~~~~~~~ 221 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL------------KLRVSEVSEKLQRGRH-------------TTTTAQLLKFDF 221 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC------------CCC--------------------------CCCSCCEEECTT
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc------------cccccceecccCCCCC-------------ceeeeEEEEcCC
Confidence 899999999999999999999999976 788888876 4443 443333444445
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~ 265 (276)
.++++|+||++.+++...+.+++..+|+++..
T Consensus 222 ~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~ 253 (301)
T 1u0l_A 222 GGYVVDTPGFANLEINDIEPEELKHYFKEFGD 253 (301)
T ss_dssp SCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS
T ss_pred CCEEEECcCCCccCCCcCCHHHHHHHHHhccc
Confidence 67999999999988887788888888888754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=171.44 Aligned_cols=144 Identities=24% Similarity=0.355 Sum_probs=108.9
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccch
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (276)
..++++|.++.|+|++.|..+. ..+++++ .++|.++|+||+||.+.+..+.|...+++.+++++.+|+.++.++
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 4689999999999999986553 4788876 589999999999999988888898888778899999999888877
Q ss_pred HHHHhhc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 151 DSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 151 ~~l~~~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|...+ .+.+++++|.||||||||+|.|.|.. ...+
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~-------------------------~~~~ 148 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------------------IAKT 148 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------------------CC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCc-------------------------eeec
Confidence 6655432 12379999999999999999999854 1223
Q ss_pred ccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCC
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~ 249 (276)
+..+| +|+..+.+....+..++||||+..+...
T Consensus 149 ~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 149 GDRPG----ITTSQQWVKVGKELELLDTPGILWPKFE 181 (282)
T ss_dssp --------------CCEEETTTEEEEECCCCCCSCCC
T ss_pred CCCCC----eeeeeEEEEeCCCEEEEECcCcCCCCCC
Confidence 33344 7777777777778899999999877654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=173.76 Aligned_cols=142 Identities=22% Similarity=0.321 Sum_probs=112.4
Q ss_pred ccchhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCcc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (276)
.+..++++|++++|+|++.|..+.. .++ ++ ++|+++|+||+||.+++..+.|...+++.|+++ .+|+.++.
T Consensus 15 ~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 15 IKDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEP 86 (262)
T ss_dssp HHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSC
T ss_pred HHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCc
Confidence 3457899999999999998865432 445 33 899999999999999888888988888888888 99999999
Q ss_pred chHHHHhhccCC--EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 149 GLDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 149 ~l~~l~~~l~g~--~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
+++.|...+... +++++|.||||||||+|.|.|... ..+ +..+| +|+..
T Consensus 87 gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~----------------------~~~---~~~~g----~T~~~ 137 (262)
T 3cnl_A 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA----------------------SSV---GAQPG----ITKGI 137 (262)
T ss_dssp HHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CCS
T ss_pred CHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc----------------------ccc---CCCCC----Cccce
Confidence 999999988774 999999999999999999998541 111 22223 66666
Q ss_pred EEEecCCCcEEEecCCCCCCCC
Q 023887 227 SLLPLSGGGYLADTPGFNQPSL 248 (276)
Q Consensus 227 ~~~~~~~~~~iiDtPg~~~~~l 248 (276)
..+....+..++||||+..+.+
T Consensus 138 ~~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 138 QWFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEECTTSCEEESSCEECCCCC
T ss_pred EEEEeCCCEEEEECCCcccCcC
Confidence 6777777889999999988876
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=151.28 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=96.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD------------APTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS------------CCSEEEEEETTEECCSSCHH
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999965 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.- .+...+.+++++|....
T Consensus 75 ~~-~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 75 EL-SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HH-HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HH-HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 00 00001346666654311
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 154 al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 154 ALANEPILLFADEPTG---NLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HTTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 79999999 999999999999999998666 99999985
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=160.23 Aligned_cols=160 Identities=23% Similarity=0.272 Sum_probs=114.1
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCH----HHHHHHHH-HhhhcCc---eeEEE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKS-RLHTWGY---EPLFC 142 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~----~~~~~~~~-~~~~~~~---~~~~~ 142 (276)
......|.++.|+|+.+|..+. ..+.+++ .++|+++|+||+||.++ +...+|.. .+++.|+ +++.+
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 141 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLV 141 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEEC
T ss_pred HhhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3456789999999998764321 2455554 38899999999999875 33455544 3566777 68899
Q ss_pred ecCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 143 SVESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 143 s~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
|+.++.+++.|...+ ++..++++|.+|+|||||+|+|.+... . .......+..+|
T Consensus 142 SA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~~------------~--------~~~~~~~~~~~g- 200 (369)
T 3ec1_A 142 SAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT------------G--------KGNVITTSYFPG- 200 (369)
T ss_dssp BTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHH------------H--------TTCCCEEEECTT-
T ss_pred ECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhcc------------C--------CccceeecCCCC-
Confidence 999999998888776 688999999999999999999998420 0 001122333334
Q ss_pred CCceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
||+....+....+..++||||+..+. ......+++...+
T Consensus 201 ---tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 201 ---TTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp ---SSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred ---eEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 88888888888889999999997665 2223344444443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-18 Score=155.71 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=97.2
Q ss_pred CceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.++.+.++|... ..++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++....
T Consensus 9 ~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~------------~p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 9 KVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL------------KPSSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCCSH
T ss_pred EEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeEEEECCEECCccc
Confidence 346778888654 4889999888 89999999999999999999999965 899999999999873100
Q ss_pred cccCCCCceeeeEEEEecCCC--c--------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG--G-------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~--~-------------------------------------------------------- 235 (276)
.. .+...+.+++++|.+. .
T Consensus 77 -~~--~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 77 -KG--IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp -HH--HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred -cc--HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 00 0012356777776431 0
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~~ 276 (276)
+|+|||+. ++|......+.+.+.++. +.| +|++|||++
T Consensus 154 iAraL~~~P~lLlLDEPts---~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTA---GLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHHTTCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 79999999 999999999999999997 556 999999974
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-18 Score=160.60 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=111.3
Q ss_pred cchhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHH----HHHHHHH-HhhhcCc---eeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~ 141 (276)
+....+.|.+++|+|+.+|..+. ..+.+++ .++|+++|+||+||.+++ ..++|.. .+++.|+ +++.
T Consensus 64 ~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 64 NGIGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp HHHHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 34556788999999997653111 1344443 489999999999998653 3455543 3566777 7889
Q ss_pred EecCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 142 CSVESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
+|+.++.+++.|...+ ++..++++|.+|+|||||+|+|.+... |.+ ......+.
T Consensus 139 iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~---------------~~~----~~~~~~~~--- 196 (368)
T 3h2y_A 139 ISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFS---------------DET----ENVITTSH--- 196 (368)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHT---------------TSC----SSCCEEEC---
T ss_pred EeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhc---------------ccc----ccceecCC---
Confidence 9999999999888776 688999999999999999999998421 000 01122333
Q ss_pred CCCceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
.++||+....+.+..+..++||||+..+. .+....+++...+
T Consensus 197 -~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 197 -FPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp -CC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred -CCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 34488888888888789999999997665 2234455555544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-18 Score=152.17 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=96.8
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCccH
Confidence 34567888887777899999888 89999999999999999999999965 899999999998764311
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.+++++|....
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 0 122345555554211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 158 AraL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTS---GLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHcCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999998666 99999986
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-18 Score=159.84 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=102.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|+....++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 5 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCCG
T ss_pred EEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC------------CCCCeEEEECCEECCCCCH
Confidence 3567888898888899999988 89999999999999999999999965 9999999999998876543
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. .+.+++++|+...
T Consensus 73 ~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 73 A-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (381)
T ss_dssp G-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred H-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHH
Confidence 2 2568898887533
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.++ | +|++|||+
T Consensus 146 rAL~~~P~lLLLDEPts---~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLS---NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999 99999999999999999764 6 99999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-18 Score=151.14 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=93.7
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|+. ...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|+++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEEccc
Confidence 3556777753 24688898888 89999999999999999999999965 9999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... ..+...+.+++++|.+..
T Consensus 72 ~~~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 72 LDDDE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CCHHH-HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CCHHH-HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 43211 000011235555543211
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+. ++|......+.+.+.++.+. | +|++|||+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts---~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTW---ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999986
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-18 Score=150.48 Aligned_cols=120 Identities=15% Similarity=0.267 Sum_probs=92.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCHH
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999965 89999999999776432110
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. ...+.+++++|...
T Consensus 77 ~----~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 77 V----INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp H----HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred H----HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 0 00111333332210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 153 aL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSL---GLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp HHTTCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 079999999 999999999999999998665 99999986
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-18 Score=152.23 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=94.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+..
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL------------SPSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS------------CCSSCEEEETTEETTTSCHH
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcCCHH
Confidence 456778888888899999988 89999999999999999999999965 89999999999877543221
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ..+.+++++|.
T Consensus 82 ~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 82 A-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp H-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred H-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1 11223333332
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||+. +||......+.+.+.++.+. + +|++|||+
T Consensus 157 ~~~~~~~~~p~lLllDEPts---~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTS---ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCS---SCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred hcccccCCCCCEEEEeCccc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 22259999999 99999999999999999765 4 89999986
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-18 Score=151.79 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|+++|+++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE------------DFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEECC-Cc
Confidence 34567888887777899999888 89999999999999999999999965 899999999998763 11
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
... .+...+.+++++|....
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 000 00012345555543211
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 170 lAraL~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTS---ALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999997766 99999986
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-18 Score=155.69 Aligned_cols=121 Identities=23% Similarity=0.375 Sum_probs=99.7
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. ....++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR------------FYDISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT------------SSCCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCcEEEECCEEcccC
Confidence 44677888885 456789999888 899999999999999999999999 4599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|.+..
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 4322 34567777765422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts---~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATS---ALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSS---CCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 79999999 999999999999999987644 99999986
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-18 Score=157.70 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=101.2
Q ss_pred CceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|.++|+++.
T Consensus 26 ~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~------------~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 26 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECS
T ss_pred EEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC------------CCCceEEEECCEECC
Confidence 35667788854 24688999888 89999999999999999999999965 999999999999887
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+...- +..++.+++++|.+..
T Consensus 94 ~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 94 TLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp SCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred cCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 6543210 0123568888887533
Q ss_pred -------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||+. +||......+.+++.++.+. | ++++|||++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs---~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATS---ALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHHHHHhcCCCEEEEECCCc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 99999999999999999764 6 999999973
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=147.09 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=91.8
Q ss_pred CceeEEEec--CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++| .....++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++...
T Consensus 9 ~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 9 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY------------IPENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTS
T ss_pred eEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhC
Confidence 356778888 3456789999888 89999999999999999999999955 89999999999776432
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... ..+.+++++|.+
T Consensus 77 ~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 77 DPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp CHHH-----HHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred CHHH-----HHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 1100 111222222211
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||.. ++|......+.+.+.++.+ + +|++||+++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~ 205 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATS---ALDYESEHVIMRNMHKICK-GRTVIIIAHRLS 205 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCS---CCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH
Confidence 1279999999 9999999999999999954 5 999999863
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=154.83 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=98.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~- 72 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDDVLVNDIPP- 72 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG-
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECCEECCCCCh-
Confidence 456778887777889999888 89999999999999999999999965 8999999999998765432
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|....
T Consensus 73 ------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 73 ------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp ------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 12467777775322
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 147 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLS---NLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp HHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999985
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-17 Score=154.91 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=98.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+||||||||||+|+|+|.. +|++|+|.++|+++.....
T Consensus 6 ~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE------------QPDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEESSSC
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEECccccc
Confidence 3567888898888899999988 89999999999999999999999966 9999999999998743211
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. -+...+.+++++|+...
T Consensus 74 ~---~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 74 N---LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp B---CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred c---cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 1 01133568888886432
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.+ .| +|++|||+
T Consensus 151 rAL~~~P~lLLLDEPts---~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 151 RALAPDPELILLDEPFS---ALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp HHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 9999999999887777654 46 99999986
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=154.48 Aligned_cols=117 Identities=18% Similarity=0.296 Sum_probs=97.5
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| ++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE------------RPTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCCG
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECCcCCh
Confidence 45677888 6666788888888 89999999999999999999999965 8999999999988765332
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 85 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 85 -------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp -------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 23567777775322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 158 rAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFA---AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp HHHTTCCSEEEEESTTC---CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 99999999999999999764 5 99999986
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=154.53 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=98.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|+++|+++......
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGGGT
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECCEECcccccc
Confidence 456778887777888999888 89999999999999999999999965 89999999999987651100
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..... ..+.+++++|....
T Consensus 74 ~~~~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 74 IFVPP-KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp EECCG-GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred ccCCH-hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 00001 23568888876422
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 153 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLS---NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHTCCSEEEEECTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHhcCCCEEEECCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 99999999999999999764 5 99999986
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-17 Score=154.65 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=96.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 13 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCCCCh
Confidence 3456788887777889999888 89999999999999999999999965 8999999999988765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 81 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 81 -------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp -------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 12456777665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 154 rAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLS---NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=154.74 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=98.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~- 72 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDEKDVTELPP- 72 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG-
T ss_pred EEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH-
Confidence 456788887777889999888 89999999999999999999999965 8999999999998765432
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|+...
T Consensus 73 ------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 73 ------KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp ------GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred ------hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence 12467788775422
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.+. | +|++|||+
T Consensus 147 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLS---NLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp HHTTCCSEEEEESGGG---GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 79999999 99999999999999999754 5 99999986
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-17 Score=141.92 Aligned_cols=126 Identities=14% Similarity=0.245 Sum_probs=91.1
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc---
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--- 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~--- 210 (276)
+.++.+.++|++ ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 77 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPITKVK 77 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGGGG
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEhhhhc
Confidence 345677888877 7899999888 89999999999999999999999965 899999999987642
Q ss_pred ----ccccccCCCCcee------------------e-------eEEEEe-------c----------------CCCcEEE
Q 023887 211 ----EVSTKSGRGKHTT------------------R-------HVSLLP-------L----------------SGGGYLA 238 (276)
Q Consensus 211 ----~vs~~~g~gk~tt------------------~-------~~~~~~-------~----------------~~~~~ii 238 (276)
-+...+..-...| . ...+-. + ++..+++
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 1111110000000 0 000000 0 0011899
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 158 DEPts---~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 158 DDPVV---AIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp ESTTT---TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred ECCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999 999999999999999997655 999999974
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-17 Score=146.56 Aligned_cols=126 Identities=23% Similarity=0.294 Sum_probs=91.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 9 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 3456778887777899999988 89999999999999999999999965 8999999999976532110
Q ss_pred -------------ccCCCCcee--eeEEE--------------------------------E---ec-------------
Q 023887 215 -------------KSGRGKHTT--RHVSL--------------------------------L---PL------------- 231 (276)
Q Consensus 215 -------------~~g~gk~tt--~~~~~--------------------------------~---~~------------- 231 (276)
.+..-.+.| .++.+ + .+
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH
Confidence 000000000 00000 0 00
Q ss_pred --------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 --------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 --------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
++..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIA---GVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 000179999999 999999999999999998766 999999974
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-17 Score=147.44 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=94.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc---
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--- 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~--- 211 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++..
T Consensus 8 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 8 HVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEEC
T ss_pred EEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccccc
Confidence 3466788887777899999888 89999999999999999999999965 8999999999977641
Q ss_pred -------cccccCCCCceeeeEEEEecCCCc-------------------------------------------------
Q 023887 212 -------VSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------- 235 (276)
Q Consensus 212 -------vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------- 235 (276)
.+... . +...+.+++++|....
T Consensus 76 ~~~~~~~~~~~~-~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 76 KDGQLKVADKNQ-L-RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TTSSEEESCHHH-H-HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccccccccChhh-H-HHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 11000 0 0011234444332110
Q ss_pred ---------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTS---ALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 999999999999999998766 99999986
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-17 Score=150.00 Aligned_cols=121 Identities=18% Similarity=0.290 Sum_probs=91.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc--cc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--EV 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~--~v 212 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|.++. ..
T Consensus 23 ~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 23 QLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE------------PATSGTVNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTBCCC---C
T ss_pred EEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCeEEEECCEEcccccC
Confidence 3566788887777899999888 89999999999999999999999965 899999999997654 11
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
+... ..+.+++++|.
T Consensus 91 ~~~~-----~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 91 SAET-----VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTG 165 (279)
T ss_dssp CHHH-----HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred CHHH-----HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHH
Confidence 1000 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--e--EEEeeeCC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--L--LYMIHMLH 276 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--i--i~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| + |++|||++
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts---~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAA---GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 00079999999 999999999999999997655 8 99999963
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-17 Score=153.87 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=98.1
Q ss_pred ceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|++.. .++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++....
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASNG 73 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEETT
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECcccc
Confidence 456778887666 788888888 89999999999999999999999965 999999999998875421
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ... +...+.+++++|....
T Consensus 74 ~-~~~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 74 K-LIV-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp E-ESS-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred c-ccC-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 0 000 1123568888876422
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 152 AraL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 152 ARALVKDPSLLLLDEPFS---NLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp HHHHTTCCSEEEEESTTT---TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999754 5 99999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-17 Score=146.63 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=88.5
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| ++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY------------QPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS------------CCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhCCH
Confidence 35567778 4556788888888 89999999999999999999999955 8999999999977643221
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ..+.+++++|.
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 146 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHH
Confidence 00 00001111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||+. ++|....+.+.+.+.++. .+ +|++||++
T Consensus 147 rv~lAral~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 198 (243)
T 1mv5_A 147 RLAIARAFLRNPKILMLDEATA---SLDSESESMVQKALDSLM-KGRTTLVIAHRL 198 (243)
T ss_dssp HHHHHHHHHHCCSEEEEECCSC---SSCSSSCCHHHHHHHHHH-TTSEEEEECCSH
T ss_pred HHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh
Confidence 11279999999 999999999999999987 45 99999986
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=147.06 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=90.4
Q ss_pred CceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.++.+.++|++ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 18 ~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 18 KFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY------------QPTGGKVLLDGEPLVQ 85 (271)
T ss_dssp EEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGG
T ss_pred EEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEccc
Confidence 35667788865 46788888888 89999999999999999999999955 8999999999977643
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
.+... ..+.+++++|.
T Consensus 86 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 160 (271)
T 2ixe_A 86 YDHHY-----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160 (271)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHH
T ss_pred CCHHH-----HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHH
Confidence 21100 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+..+|+|||.. +||......+.+.+.++.+ .+ +|++||++
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATS---ALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 01179999999 9999999999999999865 35 99999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-17 Score=152.04 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=94.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++. .++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++.....
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECCEECCCCch-
Confidence 35677888766 888888888 89999999999999999999999965 9999999999987654221
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|....
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 12345555554211
Q ss_pred -----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+.+.+.+.++.+. | +|++|||+
T Consensus 144 ~~P~lLLLDEP~s---~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLS---ALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSST---TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999985
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-17 Score=142.91 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|+. .++++++.+ + ++++|+|+||||||||+++|+|.. +|++|+|.++|.++.....
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCch-
Confidence 3456677754 478888887 7 999999999999999999999965 8999999999987643211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
..+.+++++|...
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 0112233332210
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||+. ++|....+.+.+.+.++.+. | +|++||++
T Consensus 142 ~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 142 VIQPRLLLLDEPLS---AVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp TTCCSSBEEESTTS---SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred HcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999753 5 99999986
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-17 Score=145.27 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~----------~~~p~~G~I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP----------EYTVERGEILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT----------TCEEEEEEEEETTEECTTSCHH
T ss_pred EEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCceEEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999962 14899999999987653211
Q ss_pred -----------cccCCCCcee-----------------------eeE-------EE-E--------e-cCC---------
Q 023887 214 -----------TKSGRGKHTT-----------------------RHV-------SL-L--------P-LSG--------- 233 (276)
Q Consensus 214 -----------~~~g~gk~tt-----------------------~~~-------~~-~--------~-~~~--------- 233 (276)
..+..-.+.| ..+ .+ - . ++.
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 0000000000 000 00 0 0 111
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.+.+ +|++|||++
T Consensus 156 raL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDS---GLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHHCCSEEEEECGGG---TTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 1289999999 999999999999999997665 999999863
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=144.11 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=92.2
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. .++|++|+|.++|.++...+
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~----------~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE----------DYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT----------TCEEEEEEEEETTEEGGGSC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCCeEEEECCEECCcCC
Confidence 34567788887777899999888 89999999999999999999999963 13799999999987653211
Q ss_pred c-------------ccCCCCce----------------------e-----eeE-------EEEe----------c-----
Q 023887 214 T-------------KSGRGKHT----------------------T-----RHV-------SLLP----------L----- 231 (276)
Q Consensus 214 ~-------------~~g~gk~t----------------------t-----~~~-------~~~~----------~----- 231 (276)
. .+..-... . ..+ .+-. +
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 0 00000000 0 000 0000 0
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts---~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDS---GLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTT---TCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 001189999999 999999999999999997666 999999863
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=140.99 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=89.0
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY------------DA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CC-CeEEEECCEEhh
Confidence 3456778888652 4788888888 89999999999999999999999954 66 799999997764
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... ..+.+++++|.
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 85 KYNRNS-----IRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp GBCHHH-----HHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred hcCHHH-----HhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 321100 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||+++
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATS---SLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCC---TTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 11179999999 999999999999999987522 999999863
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=140.40 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=88.9
Q ss_pred ceeEEEecC--C---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~--~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|+ + ...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI------------EPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEECc
Confidence 356677786 3 35788888888 89999999999999999999999965 899999999986542
Q ss_pred ---------cccccc---------------CCCCceee------------eEEEE--ec---------------------
Q 023887 211 ---------EVSTKS---------------GRGKHTTR------------HVSLL--PL--------------------- 231 (276)
Q Consensus 211 ---------~vs~~~---------------g~gk~tt~------------~~~~~--~~--------------------- 231 (276)
-+...+ +...+... ...+- ..
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAra 152 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHH
Confidence 111110 00000000 00000 00
Q ss_pred ---CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 ---SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 ---~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
++..+|+|||+. ++|....+.+.+.+.++.+.| +|++||+++
T Consensus 153 L~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 153 IVHEPDILILDEPLV---GLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp HTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred HHcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 001189999999 999999999999999997656 999999974
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-16 Score=151.91 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=93.9
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|++ ...++++++.+ +|++++++|+||+|||||+|+|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF------------YDVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCCEEEECCEEhhh
Confidence 445678888864 56899999988 8999999999999999999999994 59999999999987754
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.+... .++.+++++|++
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 32111 122233333321
Q ss_pred ---------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||+. ++|..+.+.+.+.+.++.+ + +|++||++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATS---ALDTESERAIQAALDELQK-NKTVLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 0179999999 9999999999999999875 5 99999986
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-16 Score=139.06 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=82.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+|+|+|.. +|+ |+|.++|.++...+... ..+.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~-G~i~~~g~~~~~~~~~~-----~~~~i 75 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------------SGK-GSIQFAGQPLEAWSATK-----LALHR 75 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCE-EEEEETTEEGGGSCHHH-----HHHHE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCC-eEEEECCEECCcCCHHH-----HhceE
Confidence 4677777777 89999999999999999999999965 899 99999997654321100 01112
Q ss_pred EEEec---------------------------------------------------------------CCC-------cE
Q 023887 227 SLLPL---------------------------------------------------------------SGG-------GY 236 (276)
Q Consensus 227 ~~~~~---------------------------------------------------------------~~~-------~~ 236 (276)
++++| .+. .+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 22222 123 47
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 156 lLDEPts---~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 156 LLDEPMN---SLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EESSTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEECCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999 999999999999999997656 99999986
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-16 Score=153.38 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|.|. |+|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF------------YDVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS------------SCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCcEEEECCEEhhh
Confidence 345677888864 35789999888 8999999999999999999999994 59999999999998876
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 54322 34556666665322
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. ++++||+++
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATS---ALDLESESIIQEALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTT---TCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 999999999999998886544 999999874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-16 Score=153.48 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=98.1
Q ss_pred cCceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|. ....++++++.+ +|++++++|+||+|||||+|+|.|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~------------~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL------------IDPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS------------SCCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCcEEEECCEEccc
Confidence 34567788884 346789999888 8999999999999999999999994 59999999999999877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 65322 34556666665322
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 485 rQrv~lARal~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 538 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTS---SVDPITEKRILDGLKRYTKGCTTFIITQKI 538 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCT---TSCHHHHHHHHHHHHHHSTTCEEEEEESCH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHhCCCCEEEEEecCh
Confidence 79999999 999999999999999886432 99999986
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-16 Score=152.89 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=98.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+|+|+|. |+|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF------------YDVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS------------SCCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------cCCCCeEEEECCEEhhhC
Confidence 345667778854 45789998888 8999999999999999999999994 599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 4322 34556666665321
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+...+.+.+.++.+.. +|++||+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATS---NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCT---TCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred HHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 999999999999999986532 999999974
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=136.00 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=85.5
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|+ +...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.+. ..++-+..
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~-~~i~~v~q 73 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH------------RPIQGKIEVY-QSIGFVPQ 73 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS------------CCSEEEEEEC-SCEEEECS
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEe-ccEEEEcC
Confidence 456778887 667888898888 89999999999999999999999965 8888988532 11211111
Q ss_pred ccCCCCcee------------------------eeE-------EE------------------------EecCCCcEEEe
Q 023887 215 KSGRGKHTT------------------------RHV-------SL------------------------LPLSGGGYLAD 239 (276)
Q Consensus 215 ~~g~gk~tt------------------------~~~-------~~------------------------~~~~~~~~iiD 239 (276)
.+..-.+.| ..+ .+ +...+..+|+|
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 110000000 000 00 00001128999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
||.. ++|....+.+.+.+.++.+. | +|++|||+
T Consensus 154 EPts---~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 154 EPTS---ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp SSST---TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred CCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9999 99999999999999999875 5 99999986
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-16 Score=151.50 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=94.7
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|++ ...++++++.+ +|++++++|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~------------~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF------------YDIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT------------TCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc------------cCCCCCeEEECCEEccc
Confidence 345677888863 46788999888 8999999999999999999999994 49999999999987755
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+... .++.+++++|++.
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 33211 2223444443210
Q ss_pred ----------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 235 ----------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 235 ----------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.+++|||+. ++|..+.+.+.+.+.++.+.. ++++||+++
T Consensus 485 q~qrl~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATS---ALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTS---SCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred HHHHHHHHHHHHhCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 179999999 999999999999999987622 999999863
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-15 Score=135.51 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=87.4
Q ss_pred ceeEEEecCC----ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.. ...++++++.++|++++|+|+||+|||||+++|+| ++ |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G------------l~-p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG------------LL-PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT------------SS-CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC------------CC-CCCcEEEECCEECcch
Confidence 3456677765 56788888887899999999999999999999999 56 8999999999765321
Q ss_pred ccccCCCCceeeeEE-EEecCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVS-LLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~-~~~~~~---------------------------------------------------------- 233 (276)
.. .+.++ +++|.+
T Consensus 71 -~~-------~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 71 -RN-------YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp -SC-------CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred -HH-------hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 00 01111 111110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeCC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHMLH 276 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~~ 276 (276)
..+++|||+. ++|....+.+.+.+.++.+ .+|++||+++
T Consensus 143 L~~~p~lllLDEPts---~LD~~~~~~l~~~L~~~~~-tviivtHd~~ 186 (263)
T 2pjz_A 143 LASQPEIVGLDEPFE---NVDAARRHVISRYIKEYGK-EGILVTHELD 186 (263)
T ss_dssp HHTCCSEEEEECTTT---TCCHHHHHHHHHHHHHSCS-EEEEEESCGG
T ss_pred HHhCCCEEEEECCcc---ccCHHHHHHHHHHHHHhcC-cEEEEEcCHH
Confidence 1179999999 9999999999999999876 7999999963
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-15 Score=132.25 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|+ +...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|. ++-+.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~-i~~v~ 72 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVAIKGS-VAYVP 72 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS------------EEEEEEEEECSC-EEEEC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCE-EEEEc
Confidence 456778886 356788888888 89999999999999999999999965 899999998873 22222
Q ss_pred cccCC-----------C----Cceeee----EEE--------------E-----ec----------------CCCcEEEe
Q 023887 214 TKSGR-----------G----KHTTRH----VSL--------------L-----PL----------------SGGGYLAD 239 (276)
Q Consensus 214 ~~~g~-----------g----k~tt~~----~~~--------------~-----~~----------------~~~~~iiD 239 (276)
..+.. + +..... ..+ + .+ ++..+++|
T Consensus 73 Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 73 QQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp SSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11100 0 000000 000 0 00 11228999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH---HHhhcc--eEEEeeeCC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFP---EVCAVG--LLYMIHMLH 276 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~---ei~~~~--ii~~~H~~~ 276 (276)
||.. ++|......+.+.+. ++.+ + +|++||+++
T Consensus 153 EPts---~LD~~~~~~i~~~l~~~~~~~~-~~tviivtH~~~ 190 (237)
T 2cbz_A 153 DPLS---AVDAHVGKHIFENVIGPKGMLK-NKTRILVTHSMS 190 (237)
T ss_dssp STTT---TSCHHHHHHHHHHTTSTTSTTT-TSEEEEECSCST
T ss_pred Cccc---ccCHHHHHHHHHHHHHHHhhcC-CCEEEEEecChH
Confidence 9999 999988888888874 3433 4 999999974
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-15 Score=144.22 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=94.4
Q ss_pred cCceeEEEec--CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++| ++...++++++.+ +|++++|+|+||||||||+++|+|.. + ++|+|.++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS------------E-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------C-CCeEEEECCEECCc
Confidence 3456788889 4566899999988 89999999999999999999999954 6 88999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+... ..+.+++++|.+.
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 44321 2234555554321
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.+|+|||.. +||......+.+.+.++.... +|++||+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts---~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSA---HLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHH---HSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 179999999 999988899998888865433 999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-15 Score=161.16 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=103.7
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.+. +.++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER------------FYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT------------SSCCSSSEEEETTEETT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc------------CccCCCCEEEECCEEhh
Confidence 4467788899643 4789999998 899999999999999999999999 67999999999999999
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
+++.+. .++++++++|++-.
T Consensus 1145 ~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1145 TLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred hCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 887654 67788999887532
Q ss_pred -------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTS---aLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATS---ALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCC---STTSHHHHHHHHHHTTTSSSSEEEEECSSSS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccc---cCCHHHHHHHHHHHHHHcCCCEEEEeccCHH
Confidence 69999999 999999888988888776543 999999764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-15 Score=131.21 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=50.0
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 69 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG 69 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEECS
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCccEEEECC
Confidence 456777784 346788888888 89999999999999999999999965 89999998887
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=139.06 Aligned_cols=110 Identities=24% Similarity=0.357 Sum_probs=78.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
.+....+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+.+.... ...+.++++ +++.+|+.
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l---~~~~~pvilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRAN---IYDFYSLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH---TTCCSCEEEEEECCCC-----C---CCSSGGGSSCCCEECBTT
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCccchhh---HHHHHHcCCCCeEEEeCc
Confidence 3444578899999999999765322 12233333 5678999999999999754211 122445677 78999999
Q ss_pred CccchHHHHhhc----c---------C-CEEEEEecCCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~---------g-~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++.+|...+ + + .+++++|.+|||||||+|.|.+..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 999988877653 2 1 379999999999999999999854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-14 Score=153.26 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=103.3
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~------------~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR------------YYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc------------ccccccCcccCCCccch
Confidence 345678888853 35789999888 899999999999999999999999 66999999999999998
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
+++... .+.++++++|++-.
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 887554 66788999887532
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|+|+. ++|..+...+.+.+.++.+.- +|++||.++
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tS---aLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATS---ALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTT---TSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred HHHHHHHHHHHccCCCEEEEecccc---cCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 79999999 999988888999998877543 999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=132.28 Aligned_cols=110 Identities=28% Similarity=0.393 Sum_probs=80.4
Q ss_pred ccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESK 147 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 147 (276)
....+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+.+... ......+.++++ +++.+|+.++
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFE-REVKPELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHH-HHTHHHHGGGSSCSCEECBTTTT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccH-HHHHHHHHhcCCCCEEEEeccCC
Confidence 34568999999999999765322 22344444 446899999999999854311 122133456788 7899999999
Q ss_pred cchHHHHhhc----c----C----------CEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL----R----D----------QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l----~----g----------~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|...+ + . .+++|+|+||||||||+|.|+|..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 9988876553 1 1 279999999999999999999965
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-14 Score=152.95 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=99.1
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g------------~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR------------LYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEHH
Confidence 4456788888642 4789999888 899999999999999999999999 55999999999999987
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+... .++.+++++|++..
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 765432 45567777776422
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 531 q~QriaiARal~~~p~iliLDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 585 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATS---ALDTESEAVVQAALDKAREGRTTIVIAHRL 585 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTC---SSCHHHHHHHHHHHHHHHTTSEEEEECSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 79999999 999988888888888776532 99999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-14 Score=151.28 Aligned_cols=120 Identities=17% Similarity=0.319 Sum_probs=95.8
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.++|.++...
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g------------~~~p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER------------FYDPMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT------------SSCCSEEEEESSSSCTTSS
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEcccC
Confidence 34567777543 4788999888 899999999999999999999999 5599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 1101 ~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgG 1175 (1284)
T 3g5u_A 1101 NVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175 (1284)
T ss_dssp CHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHH
T ss_pred CHHH-----HHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHH
Confidence 4322 34456666665311
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||+++
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs---~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATS---ALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSS---SCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 79999999 999999999999998865422 999999974
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=127.62 Aligned_cols=110 Identities=24% Similarity=0.340 Sum_probs=75.0
Q ss_pred ccccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
.+....+.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.... ...+.++++ .++.+|+.
T Consensus 94 ~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l---~~~~~pvilV~NK~D~~~~~~~---~~e~~~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 94 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRAN---IYDFYSLGFGEPYPISGT 167 (456)
T ss_dssp HHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHH---TTCCSCEEEEEECC------------CCSGGGSSSSEEECCTT
T ss_pred HHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHH---HHcCCCEEEEEECccchhhhhh---HHHHHHcCCCceEEeecc
Confidence 3344578899999999998754222 12333333 5679999999999999754211 123445666 57889999
Q ss_pred CccchHHHHhhc----c----------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~----------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++.+|...+ + ...++++|.+|||||||+|.|.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 998888876653 1 2478999999999999999999854
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-13 Score=125.75 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=42.9
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS------------CEEEEEEECCS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 45688888887 89999999999999999999999965 89999998876
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=130.97 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=81.9
Q ss_pred eEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce---------eeccc
Q 023887 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFEDQ 207 (276)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g~ 207 (276)
.+.++|+.. ..+.+++ .+ +|++++|+|+||+|||||+|+|+|.. +|++|++ .++|.
T Consensus 26 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~------------~p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL------------IPNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp CEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSHHHHHHHTTTS
T ss_pred CcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCccCcchhhhHHhhCCc
Confidence 567778654 3677777 66 89999999999999999999999965 7888885 34554
Q ss_pred ccccccc-----ccCCC---------Cc----e---------------------------eeeEE--------------E
Q 023887 208 RVGEVST-----KSGRG---------KH----T---------------------------TRHVS--------------L 228 (276)
Q Consensus 208 ~~~~vs~-----~~g~g---------k~----t---------------------------t~~~~--------------~ 228 (276)
.+..... ..+.+ .. + .+.+. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 3321100 00000 00 0 00000 0
Q ss_pred EecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+...+..+|+|||+. +||....+.+.+.+.++.+.| +|++|||+
T Consensus 173 L~~~P~lLlLDEPTs---~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 173 LLRNATFYFFDEPSS---YLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp HHSCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 000112289999999 999999999999999998766 99999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-13 Score=132.22 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=82.6
Q ss_pred eeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce---------eecc
Q 023887 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (276)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (276)
+.+.++|+.. ..+.+++ .+ +|++++|+|+||+|||||+|+|+|.. +|++|++ .++|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll------------~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL------------IPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS------------CCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC------------CCCCCccccccchhhheeCC
Confidence 3567777654 3677777 65 89999999999999999999999966 7888885 3455
Q ss_pred ccccccc-----cccCCC---------C----ce---------------------------eeeEE--------------
Q 023887 207 QRVGEVS-----TKSGRG---------K----HT---------------------------TRHVS-------------- 227 (276)
Q Consensus 207 ~~~~~vs-----~~~g~g---------k----~t---------------------------t~~~~-------------- 227 (276)
..+.... .....+ . .+ .+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAr 241 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAA 241 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHH
Confidence 4432210 000000 0 00 00000
Q ss_pred EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 228 ~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+...+..+|+|||+. +||......+.+.+.++.+.| +|++|||+
T Consensus 242 aL~~~P~lLlLDEPTs---~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl 288 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSS---YLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288 (607)
T ss_dssp HHHSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 0000112289999999 999999999999999998766 99999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=128.24 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=69.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee-------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR------------- 224 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~------------- 224 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+. ..++-+..........|.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 79999999999999999999999966 8888888652 222222211100000000
Q ss_pred --------------------eEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--
Q 023887 225 --------------------HVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG-- 267 (276)
Q Consensus 225 --------------------~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~-- 267 (276)
.+. .+..++..+|+|||+. +||......+.+.+.++.+ .|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA---YLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCE
Confidence 000 0000111289999999 9999999999999999964 44
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
+|++|||+
T Consensus 525 vi~vsHd~ 532 (607)
T 3bk7_A 525 ALVVEHDV 532 (607)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999996
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=126.38 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=69.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee--------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-------------- 223 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt-------------- 223 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+. ..++-+..........|
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 79999999999999999999999966 8888888652 22222221110000000
Q ss_pred -------------------eeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--
Q 023887 224 -------------------RHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG-- 267 (276)
Q Consensus 224 -------------------~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~-- 267 (276)
+.+. .+...+..+|+|||+. ++|......+.+.+.++.+ .|
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~---~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA---YLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0000 0000112289999999 9999999999999999974 44
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
+|++|||+
T Consensus 455 vi~vsHd~ 462 (538)
T 1yqt_A 455 ALVVEHDV 462 (538)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999996
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=127.24 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=33.1
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. +||......+.+.+.++.+ + +|++||++
T Consensus 160 lllDEPts---~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl 197 (538)
T 3ozx_A 160 YIFDQPSS---YLDVRERMNMAKAIRELLK-NKYVIVVDHDL 197 (538)
T ss_dssp EEEESTTT---TCCHHHHHHHHHHHHHHCT-TSEEEEECSCH
T ss_pred EEEECCcc---cCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh
Confidence 89999999 9999999999999999976 5 99999986
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-12 Score=125.54 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=74.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee--------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-------------- 223 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt-------------- 223 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+++..++.++.........|
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 360 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI------------TADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALS 360 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS------------CCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccc
Confidence 79999999999999999999999966 8999999888776654332211000000
Q ss_pred --------------------eeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c-
Q 023887 224 --------------------RHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G- 267 (276)
Q Consensus 224 --------------------~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~- 267 (276)
+.+. .+...+..+|+|||+. +||.....++.+.+.++.+. +
T Consensus 361 ~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~---gLD~~~~~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 361 TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS---YLDVEERYIVAKAIKRVTRERKA 437 (538)
T ss_dssp TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCC
Confidence 0000 0000111289999999 99999999999999999753 5
Q ss_pred -eEEEeeeCC
Q 023887 268 -LLYMIHMLH 276 (276)
Q Consensus 268 -ii~~~H~~~ 276 (276)
++++|||++
T Consensus 438 tvi~vsHdl~ 447 (538)
T 3ozx_A 438 VTFIIDHDLS 447 (538)
T ss_dssp EEEEECSCHH
T ss_pred EEEEEeCCHH
Confidence 899999963
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=128.30 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=34.4
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. +||......+.+.+.++.+.| +|++||++
T Consensus 243 lllDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 243 YMFDEPSS---YLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp EEEECTTT---TCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred EEEECccc---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 89999999 999999999999999998876 99999986
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.6e-13 Score=110.23 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=61.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc----ccCCCCceeeeEEE-----
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST----KSGRGKHTTRHVSL----- 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~----~~g~gk~tt~~~~~----- 228 (276)
+|++++++|+||||||||++++.+.......+..-.+..++.|.+.+.+........ ....+ .......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~s 85 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLG--KLTVVDATNVQE 85 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTT--CCEEEESCCCSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCC--CeEEEECCCCCH
Confidence 799999999999999999994332110000000000224555555554421111000 00000 0000000
Q ss_pred ------------EecCCCcEEEecCCCCCCCCChh----------------hHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 ------------LPLSGGGYLADTPGFNQPSLLKV----------------TKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ------------~~~~~~~~iiDtPg~~~~~l~~~----------------~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+-..+..+++|||.. ++|.. ....+.+.+.++.+.| +|++||++
T Consensus 86 ~g~~qrv~iAral~~~p~~lllDEPt~---~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 86 SARKPLIEMAKDYHCFPVAVVFNLPEK---VCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCHH---HHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeCCHH---HHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 001123489999998 88776 4477788888887667 99999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.9e-11 Score=116.45 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=33.8
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
.+|+|||+. +||.....++.+.+.++.. .| +|++|||+
T Consensus 488 lLlLDEPT~---gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 488 IYLIDEPSA---YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp EEEECCTTT---TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred EEEEECCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 389999999 9999999999999999864 45 99999996
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-12 Score=132.60 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=46.2
Q ss_pred EEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 140 LFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 140 ~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++
T Consensus 677 Ls~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll------------~P~sG~I~~~~ 734 (986)
T 2iw3_A 677 MEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL------------LPTSGEVYTHE 734 (986)
T ss_dssp EEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS------------CCSEEEEEECT
T ss_pred eEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEcC
Confidence 4555643 34688888887 89999999999999999999999966 89999999875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-11 Score=122.89 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+|+|||+. +||......+.+.+.++.+.| +|++|||++
T Consensus 225 lLlLDEPts---gLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 225 LYVLDEPSI---GLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp EEEEECTTT---TCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred EEEEECCcc---CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 589999999 999999999999999998776 999999963
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=103.79 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccccccccccCCCCceeeeE-
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVSTKSGRGKHTTRHV- 226 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~~~vs~~~g~gk~tt~~~- 226 (276)
.+++++ .-+|+.++|+|+||||||||+++|+| +++|+ +|+|.++|.++..+.... .+ .-.+.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g------------~~~~~~~G~I~~~g~~i~~~~~~~-~~--~v~q~~ 79 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPIEYVFKHK-KS--IVNQRE 79 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHH------------HHHHHCCCEEEEEESSCCSCCCCS-SS--EEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHH------------hCCCCCCCEEEEcCCcceeecCCc-ce--eeeHHH
Confidence 577777 33899999999999999999999999 45888 999999988765443110 00 00000
Q ss_pred -------------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 227 -------------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 227 -------------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+.+++..+++|||. |... +...+... ..| +++++|+.+
T Consensus 80 ~gl~~~~l~~~la~aL~~~p~illlDEp~------D~~~---~~~~l~~~-~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 80 VGEDTKSFADALRAALREDPDVIFVGEMR------DLET---VETALRAA-ETGHLVFGTLHTNT 134 (261)
T ss_dssp BTTTBSCHHHHHHHHHHHCCSEEEESCCC------SHHH---HHHHHHHH-HTTCEEEEEECCSS
T ss_pred hCCCHHHHHHHHHHHHhhCCCEEEeCCCC------CHHH---HHHHHHHH-ccCCEEEEEeCcch
Confidence 0001245668999997 3333 33344433 345 899999853
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-11 Score=103.78 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=34.7
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (276)
+|++...++++ -+|++++|+|+||+|||||+++|+| + +|++|+|.
T Consensus 9 ~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~G------------l-~p~~G~I~ 53 (208)
T 3b85_A 9 TLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAV------------Q-ALQSKQVS 53 (208)
T ss_dssp SHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHH------------H-HHHTTSCS
T ss_pred CHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhc------------C-CCcCCeee
Confidence 34444445554 3799999999999999999999999 4 67777764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=114.42 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=62.6
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccccccccCCCCceeeeEEEEec--------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL-------- 231 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~-------- 231 (276)
.++|+|+||||||||+|+|+|.. .| ++|.|+++|.++....... .+.....++++++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~------------~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~l~~~~ 112 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA------------LPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYEIEISDAS 112 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------------------CCCSCEEEEEEECSS--SSCCEEEESCC---CCCCCHH
T ss_pred eEEEECCCCChHHHHHHHHhCCC------------CCCCCCeEEEcCEEEEEecCCc--cccceeEEeeecccccCCCHH
Confidence 49999999999999999999965 67 7999999998753221110 0011222222221
Q ss_pred ---------------------------------CCCcEEEecCCCCC---CCCChhhHHHHHHHHHHHhhc--c--eEEE
Q 023887 232 ---------------------------------SGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEVCAV--G--LLYM 271 (276)
Q Consensus 232 ---------------------------------~~~~~iiDtPg~~~---~~l~~~~~~~l~~~f~ei~~~--~--ii~~ 271 (276)
.+..+++|+||+.. .++|......+.+++.++... + ++++
T Consensus 113 tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vv 192 (608)
T 3szr_A 113 EVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVV 192 (608)
T ss_dssp HHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 24568999998653 356777788889999886443 3 6788
Q ss_pred eeeCC
Q 023887 272 IHMLH 276 (276)
Q Consensus 272 ~H~~~ 276 (276)
+|+++
T Consensus 193 t~~~d 197 (608)
T 3szr_A 193 PSNVD 197 (608)
T ss_dssp ESSSC
T ss_pred eccch
Confidence 88764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=103.93 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=71.6
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...++.+++.+ +|+.++|+|+||+|||||+|+|+|. ++|++|.|.++|.+.-... . ....
T Consensus 158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~------------~~~~~g~i~i~~~~e~~~~--~-----~~~~ 218 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF------------IPKEERIISIEDTEEIVFK--H-----HKNY 218 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG------------SCTTSCEEEEESSCCCCCS--S-----CSSE
T ss_pred HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCcEEEECCeeccccc--c-----chhE
Confidence 34678888887 8999999999999999999999995 4899999999987522111 0 1223
Q ss_pred EEEEec---------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--ceEEEeeeCC
Q 023887 226 VSLLPL---------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--GLLYMIHMLH 276 (276)
Q Consensus 226 ~~~~~~---------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~ii~~~H~~~ 276 (276)
++++.. .+..+++|||.. . ++.+.+..+... ++++++|..+
T Consensus 219 i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~---~-------e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 219 TQLFFGGNITSADCLKSCLRMRPDRIILGELRS---S-------EAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp EEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS---T-------HHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh---H-------HHHHHHHHHhcCCCEEEEEEcccH
Confidence 444421 234489999986 1 234566666543 3899999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-11 Score=118.71 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=35.4
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||+. +||..+...+.+.+.++.+.| +|++|||+
T Consensus 567 llllDEPt~---~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 567 LYILDEPTT---GLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp EEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999 999999999999999998776 99999996
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-10 Score=101.35 Aligned_cols=65 Identities=29% Similarity=0.510 Sum_probs=37.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC----CcE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG----GGY 236 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~----~~~ 236 (276)
+++|+|+||+|||||||+|.|.. .|++|++.++|.++.... ..+.++++++.. ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~------------~~~~G~i~~~g~~i~~~~--------~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ------------VSRKASSWNREEKIPKTV--------EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------------C------------CCCCC--------SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------------CCCCCccccCCcccCcce--------eeeeeEEEeecCCCcCCce
Confidence 58999999999999999999955 899999999998752211 234677777754 458
Q ss_pred EEecCCCCC
Q 023887 237 LADTPGFNQ 245 (276)
Q Consensus 237 iiDtPg~~~ 245 (276)
+.|+|++..
T Consensus 64 v~d~~~~g~ 72 (270)
T 3sop_A 64 VIDTPGFGD 72 (270)
T ss_dssp EECCCC--C
T ss_pred EEechhhhh
Confidence 999999954
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-10 Score=112.16 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=81.2
Q ss_pred CccchHHHHh-hc-cCCEEEEEecCCCChhHHHHH--HcCCCCCCccccccCcccccccceeecccccccc----ccccC
Q 023887 146 SKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV----STKSG 217 (276)
Q Consensus 146 ~~~~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~--L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v----s~~~g 217 (276)
...+++++++ .+ +|++++|+|+||||||||+++ +.|.. +|.+|.+++++.+...- ....|
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~------------~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------------EFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------------HHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------------hCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 4568999999 77 899999999999999999999 67844 78899999988663210 00001
Q ss_pred CCC-cee--eeEEEEec-----------------------------CCCcEEEecCCCCCCC--CChhhHHHHHHHHHHH
Q 023887 218 RGK-HTT--RHVSLLPL-----------------------------SGGGYLADTPGFNQPS--LLKVTKQSLAQTFPEV 263 (276)
Q Consensus 218 ~gk-~tt--~~~~~~~~-----------------------------~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f~ei 263 (276)
.-- ... ..+..+.. ..+.+++|+|....+. +|....+.+.+++.++
T Consensus 92 ~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 92 WDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp CCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred CChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000 000 00111110 1123799999975544 4566778899999999
Q ss_pred hhcc--eEEEeeeCC
Q 023887 264 CAVG--LLYMIHMLH 276 (276)
Q Consensus 264 ~~~~--ii~~~H~~~ 276 (276)
++.| +|+++|+++
T Consensus 172 ~~~g~tvl~itH~~~ 186 (525)
T 1tf7_A 172 KQIGATTVMTTERIE 186 (525)
T ss_dssp HHHTCEEEEEEECSS
T ss_pred HHCCCEEEEEecCCC
Confidence 8877 899999874
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=102.91 Aligned_cols=71 Identities=24% Similarity=0.211 Sum_probs=53.2
Q ss_pred cchHHHHhhc-cCC--------------------EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 148 LGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 148 ~~l~~l~~~l-~g~--------------------~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
..++++++.+ +|+ +++|+|+||||||||||+|+|.. +|++|+|.+++
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~------------~p~~GsI~~~g 104 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG------------NEEEGAAKTGV 104 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC------------TTSTTSCCCCC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC------------CccCceEEECC
Confidence 4577888777 777 99999999999999999999965 89999999888
Q ss_pred ccccccccccCCCCceeeeEEEEecC---CCcEEEecCCCC
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS---GGGYLADTPGFN 244 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~~iiDtPg~~ 244 (276)
.++.. . .++++. +...+.|+||+.
T Consensus 105 ~~~t~-------------~-~~v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 105 VEVTM-------------E-RHPYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp ----C-------------C-CEEEECSSCTTEEEEECCCGG
T ss_pred eecce-------------e-EEeccccccCCeeehHhhccc
Confidence 75421 0 123332 366899999984
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-10 Score=105.93 Aligned_cols=61 Identities=23% Similarity=0.127 Sum_probs=49.4
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+..+|.....++++++.+ +|.+++|+|+||||||||+|+|.|.. .|++|+|.+.+.+....
T Consensus 35 ~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~------------~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 35 ADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL------------TAAGHKVAVLAVDPSST 96 (337)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEEEECGGGG
T ss_pred cccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh------------hhCCCEEEEEEEcCccc
Confidence 333444445688888877 78999999999999999999999944 88999999988877543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.6e-10 Score=105.33 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=84.5
Q ss_pred eeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc---ccccc
Q 023887 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (276)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~~~~v 212 (276)
+.+...|. ....++++ +.+ +|++++|+|+||+|||||+++|+|.. +|++|.|.++|+ ++...
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~------------~~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT------------RADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHHHH
T ss_pred eccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEeceecHHHHHH
Confidence 44455565 34578888 776 89999999999999999999999954 899999999998 44432
Q ss_pred ccccCCCCceeeeEEEEecCCCc--------------------------EEEec-----------------CCCCCCCCC
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------YLADT-----------------PGFNQPSLL 249 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------~iiDt-----------------Pg~~~~~l~ 249 (276)
....-......+.+.++++.... .++|. |-. ..++|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~-t~glD 280 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPA-TKGYP 280 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCC-SSSCC
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcc-cccCC
Confidence 21100000133456677663211 34443 211 33678
Q ss_pred hhhHHHHHHHHHHHhh---c-c-------eEEEeeeCC
Q 023887 250 KVTKQSLAQTFPEVCA---V-G-------LLYMIHMLH 276 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~---~-~-------ii~~~H~~~ 276 (276)
......+.+++.++.+ . | +++++||++
T Consensus 281 ~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 281 PSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp TTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 8888889999988876 2 4 677889874
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-09 Score=100.28 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=37.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|++ ++.|++|+|.+.+.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag------------ll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR------------YYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH------------HHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCEEEEEeecCCC
Confidence 588999999999999999999999 458999999999988754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-09 Score=111.06 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=37.2
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|
T Consensus 441 ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566777777888888888 899999999999999999999984
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.9e-10 Score=103.48 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=50.9
Q ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHhhhc--CceeEEEecCCccchHHHHh-------h------------------cc
Q 023887 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKLGLDSLLQ-------R------------------LR 158 (276)
Q Consensus 106 ~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~~l~~-------~------------------l~ 158 (276)
..++.++++||+|+.++...+.|..+++.+ +......+.....+...+.. . ..
T Consensus 87 ~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 87 DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 355677899999999988888888777653 33322222111111111111 0 13
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|+||||||||+|.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999853
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-09 Score=87.34 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=27.1
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++ +.+ +|.+++|+|+||||||||+|+|.|..
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555 333 78899999999999999999999854
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-09 Score=89.50 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=44.2
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
...++.+++.+ +|++++|+|+||+|||||+++|+| .. |++|+|.++|..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g------------~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ------------GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH------------HT-TCCSCCCCCTTTCE
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH------------hC-CCCCeEEECCEeee
Confidence 34677888887 899999999999999999999999 44 88999999988764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=97.27 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=50.7
Q ss_pred EEecCCccchHHHHhhc-cCCE--EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 141 FCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~--v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.++|+... ++++++.+ +|.+ ++|+|+||+|||||||+|+|.. ++|..+..... +
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------------------l~g~~~~~~~~--~ 78 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------------------FEGEPATHTQP--G 78 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------------------C-------CCS--S
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------------------ccCCcCCCCCc--c
Confidence 44555555 89999988 8999 9999999999999999999954 11222222111 1
Q ss_pred CCCceeeeEEEEecCC----CcEEEecCCCCC
Q 023887 218 RGKHTTRHVSLLPLSG----GGYLADTPGFNQ 245 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~----~~~iiDtPg~~~ 245 (276)
.+...++++++.. ...++|+|++..
T Consensus 79 ---~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 79 ---VQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp ---CEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred ---ceEeeEEEEeecCccccccchhhhhhhhh
Confidence 1345677777764 357999999943
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-09 Score=100.84 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-c-eeecc
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFED 206 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~-i~~~g 206 (276)
++++.+ +|++++|+|+||||||||+++|+|.. .|++| + |++++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~------------~p~~G~~pI~vdg 175 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA------------LKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT------------HHHHCCCCEEEEC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc------------cccCCceeEEEcC
Confidence 577776 89999999999999999999999965 88889 8 87776
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=83.77 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=58.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc--ceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
+|+.++|+|+||+|||||++++.+.. .+ +| .+++++.+.... .+......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~------------~~-~g~~~~~~~~~~~~~~---------------~~~~~~~l 86 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA------------LE-AGKNAAYIDAASMPLT---------------DAAFEAEY 86 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH------------HT-TTCCEEEEETTTSCCC---------------GGGGGCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH------------Hh-cCCcEEEEcHHHhhHH---------------HHHhCCCE
Confidence 79999999999999999999999854 33 35 455544432211 01123577
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEee
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIH 273 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H 273 (276)
+++|+|+. ++....+.+.+++.++.+.+ ++++||
T Consensus 87 LilDE~~~----~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 87 LAVDQVEK----LGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp EEEESTTC----CCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred EEEeCccc----cChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 89999987 44444778888888888765 455555
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-09 Score=92.19 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=31.5
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+...++++++.+ +|++++|+|+||||||||+++|+| ++ | |+|.+ +.++.
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g------------~~-p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN------------EF-P--NYFYF-SVSCT 58 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHH------------HS-T--TTEEE-CCCEE
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHh------------hC-C--CcEEE-eeccc
Confidence 345688999988 899999999999999999999999 33 4 88887 65543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-09 Score=92.72 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=31.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~ 208 (276)
+|+.++|+||||||||||+++|+|.. +| ..|.|.+.+.+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~------------~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ------------PLYDTQVSVSHTTRQ 55 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS------------CTTTEEECCCEECSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC------------CCCceEEEEEecCCC
Confidence 79999999999999999999999965 43 56777665543
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.6e-08 Score=80.65 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=46.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|++|||||||+|.|.+.. .....+...+ +|.....+..+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~l~ 74 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK------------------------NLARTSSKPG----KTQTLNFYIINDELHFV 74 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------------------------------CCEEEEEETTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC------------------------CccccCCCCC----ceeeEEEEEECCcEEEE
Confidence 4689999999999999999999843 0111222223 55556666666678999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHH
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPE 262 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~e 262 (276)
||||+..........+......+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred ECCCCCccccCHHHHHHHHHHHHH
Confidence 999986655544334444433333
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-09 Score=101.05 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=33.9
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+|+|+|.. +||....+.+.+.+.++.+.. +|++||++
T Consensus 317 ~~LlLDEpt~---~LD~~~~~~l~~~L~~l~~~~~vi~itH~~ 356 (415)
T 4aby_A 317 PSVVFDEVDA---GIGGAAAIAVAEQLSRLADTRQVLVVTHLA 356 (415)
T ss_dssp SEEEESSTTT---TCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4589999999 999999999999999997422 99999985
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-08 Score=83.01 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=47.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC----CC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS----GG 234 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~----~~ 234 (276)
..+++|+|.+|||||||+|.|.+... ....+...+ +|......... ..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~------------------------~~~~~~~~~----~t~~~~~~~~~~~~~~~ 80 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKR------------------------LAFASKTPG----RTQHINYFSVGPAAEPV 80 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSS------------------------SSCTTCCCC----SCCCEEEEEESCTTSCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc------------------------ceeecCCCC----cccceEEEEecCCCCCc
Confidence 45899999999999999999998531 112222233 55555555554 46
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHH
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTF 260 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f 260 (276)
..++||||+..........+.....+
T Consensus 81 ~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 81 AHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp EEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred EEEEcCCCCCcccCChhhHHHHHHHH
Confidence 78999999966655443333333333
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=77.61 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=48.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
.+++++|.+|||||||+|.|.+.. ....+...+ +|.............++|
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~----~t~~~~~~~~~~~~~i~D 74 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK-------------------------IAFVSKTPG----KTRSINFYLVNSKYYFVD 74 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC-------------------------CSCCCSSCC----CCCCEEEEEETTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc-------------------------cccccCCCC----CccCeEEEEECCcEEEEE
Confidence 479999999999999999999843 111222222 555566666667789999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ 261 (276)
|||+.....+....+......+
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCccccCChhhHHHHHHHHH
Confidence 9998555444433444444333
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-09 Score=111.05 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. +||..+.+.+.+.+.++.+.| +|+++||++
T Consensus 828 ~LLILDEPTs---GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 828 TLYILDEPTV---GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp EEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4689999999 999999999999999998876 999999973
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-08 Score=85.42 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
|++++|+|+||+|||||++.|+|.. + ++| +.++|..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~------------~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL------------K-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH------------H-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc------------c-cCC-EEEcCEec
Confidence 5789999999999999999999954 5 667 77666444
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-08 Score=85.97 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999843
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=86.77 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|.+|||||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999854
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-08 Score=93.67 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=37.6
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~ 209 (276)
.+.++. .-+|+.++|+|+||||||||+++|++ +++|. +|+|.+.+.++
T Consensus 127 ~l~~l~-~~~g~~i~ivG~~GsGKTTll~~l~~------------~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT-TSSSEEEEEECSSSSSHHHHHHHHHH------------HHHHHSCCEEEEEESSC
T ss_pred HHHHHh-hcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcCCCcEEEEecccH
Confidence 345443 22789999999999999999999999 44887 89997666544
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.1e-09 Score=88.88 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|+||+|||||+++|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999865
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-09 Score=108.76 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=35.7
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+.+.+.+.+.++.+.| +|++|||+
T Consensus 753 ~lLILDEPTs---GLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 753 TVYVLDEPTT---GLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp EEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4589999999 999999999999999998876 99999986
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-08 Score=102.97 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHH--------cCCCCCCccccccCcccccccc-eeeccccccccccccCCCC
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINAL--------RSSPHASDAADVDNWFEPILGS-KWFEDQRVGEVSTKSGRGK 220 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L--------~g~~~~~~~~~~~~~~~p~~G~-i~~~g~~~~~vs~~~g~gk 220 (276)
+++++.+ +|++++|+||||+||||||+++ .|.. .|.++. +.+...-... .|...
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~------------vpa~~~~~~~~d~i~~~----ig~~d 716 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF------------VPCESAEVSIVDCILAR----VGAGD 716 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC------------BSEEEEEEECCSEEEEE----CC---
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc------------cccccccchHHHHHHHh----cCchh
Confidence 3444444 5899999999999999999999 6633 333322 1111110000 01000
Q ss_pred ceeee-----------EEEE--ecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 221 HTTRH-----------VSLL--PLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 221 ~tt~~-----------~~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..... ...+ ...+..+|+||||. ++|..+...+ ...+..+.+. + ++++||+.
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~---GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGR---GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC---SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 00000 0011 12456799999999 9998877777 6677777763 5 99999985
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-09 Score=87.30 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=61.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc-e-eecccccc-ccccccCCCCceeeeEEEEecCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS-K-WFEDQRVG-EVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~-i-~~~g~~~~-~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
+|+.++|+|+||+|||||++++++.. .|.+|. + ++...... .+......+. ....... .....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 102 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI------------YEKKGIRGYFFDTKDLIFRLKHLMDEGK-DTKFLKT-VLNSP 102 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH------------HHHSCCCCCEEEHHHHHHHHHHHHHHTC-CSHHHHH-HHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH------------HHHcCCeEEEEEHHHHHHHHHHHhcCch-HHHHHHH-hcCCC
Confidence 58899999999999999999999854 445553 2 22211111 0000000000 0000000 11357
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|+|+.. +++....+.+.+.+.+..+.+ +|++||..
T Consensus 103 llilDE~~~~--~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 103 VLVLDDLGSE--RLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp EEEEETCSSS--CCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred EEEEeCCCCC--cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 7999999852 567777778888888887665 88888853
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-08 Score=82.73 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=65.7
Q ss_pred chHHHHh-hc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc--ccc---ccCCCC-
Q 023887 149 GLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--VST---KSGRGK- 220 (276)
Q Consensus 149 ~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~--vs~---~~g~gk- 220 (276)
.++++.. -+ +|+.++|+|+||+|||||++.|++.. .+..|.+.+.+.+... +.. ..+...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG------------LRDGDPCIYVTTEESRDSIIRQAKQFNWDFE 78 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH------------HHHTCCEEEEESSSCHHHHHHHHHHTTCCCG
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH------------HHCCCeEEEEEcccCHHHHHHHHHHhcchHH
Confidence 3455443 23 78999999999999999999999743 4555665544322110 000 000000
Q ss_pred -ceeeeEEE-----------------------------E-ecCCC--cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-c
Q 023887 221 -HTTRHVSL-----------------------------L-PLSGG--GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-V 266 (276)
Q Consensus 221 -~tt~~~~~-----------------------------~-~~~~~--~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~ 266 (276)
........ + ...+. .+++|+|.... ..+.....++.+.+.++.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~-~~d~~~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 79 EYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF-LDKPAMARKISYYLKRVLNKW 157 (235)
T ss_dssp GGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS-SSCGGGHHHHHHHHHHHHHHT
T ss_pred HHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh-cCCHHHHHHHHHHHHHHHHhC
Confidence 00000000 0 01346 89999999621 2366667778888888864 4
Q ss_pred c--eEEEeeeC
Q 023887 267 G--LLYMIHML 275 (276)
Q Consensus 267 ~--ii~~~H~~ 275 (276)
+ +++++|+.
T Consensus 158 ~~~vi~~~h~~ 168 (235)
T 2w0m_A 158 NFTIYATSQYA 168 (235)
T ss_dssp TEEEEEEEC--
T ss_pred CCeEEEEeccC
Confidence 5 89999986
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-07 Score=76.32 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||||||||+|.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999999853
|
| >1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=98.56 E-value=8.1e-08 Score=69.31 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=46.8
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|+++...+.|||+|.++..+.+..+|.|+
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELE-NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEET-TSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 6789999955366 77544 57899999999999888899999999998754345567665
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.8e-08 Score=90.13 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+| ++.|.+|+|.+.+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag------------~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN------------WLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHhcCCEEEEEeecccc
Confidence 689999999999999999999999 458999999999887754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=85.36 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++..+ +|+.++|+|+||+|||||++.|++..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888766 89999999999999999999999854
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-08 Score=104.01 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC--CCCce-----
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG--RGKHT----- 222 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g--~gk~t----- 222 (276)
+++++.+ +|++++|+||||+||||||+++.+.... .....+.+.....+.+...-...+..... .+..+
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~---aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em 740 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM---AQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEEL 740 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH---HHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH---hhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHH
Confidence 3444444 5899999999999999999998642100 00000111111111111100000000000 00000
Q ss_pred eeeEEEE--ecCCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhh-cc--eEEEeeeC
Q 023887 223 TRHVSLL--PLSGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 223 t~~~~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~-~~--ii~~~H~~ 275 (276)
.....+. ...+..+|+|||+. ++|..+...+. ..+..+.+ .| ++++||++
T Consensus 741 ~~~~~il~~a~~p~LlLLDEP~~---GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 741 TDTAEIIRKATSQSLVILDELGR---GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp HHHHHHHHHCCTTCEEEEESTTT---TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHhccCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 0000000 12356799999999 99998888876 67777765 45 99999986
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-08 Score=91.60 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccccccccccCCCCceeeeEE---------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVSTKSGRGKHTTRHVS--------- 227 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--------- 227 (276)
++..++|+|+||||||||+++|+|.. .|+ .|.|...+.++..... ... ..-.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~------------~~~~~~~i~t~ed~~e~~~~-~~~--~~v~q~~~~~~~~~~~ 186 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL------------NNTKYHHILTIEDPIEFVHE-SKK--CLVNQREVHRDTLGFS 186 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH------------HHHCCCEEEEEESSCCSCCC-CSS--SEEEEEEBTTTBSCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc------------cCCCCcEEEEccCcHHhhhh-ccc--cceeeeeeccccCCHH
Confidence 67799999999999999999999954 666 4565544333221110 000 0000110
Q ss_pred -----EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 228 -----LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 228 -----~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+.+++..+++|||. +.. ..+.+.+....| +++++|+.+
T Consensus 187 ~~La~aL~~~PdvillDEp~------d~e----~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMR------DLE----TIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCC------SHH----HHHHHHHHHHTTCEEEEEESCSS
T ss_pred HHHHHHhhhCcCEEecCCCC------CHH----HHHHHHHHHhcCCEEEEEEccCh
Confidence 112345669999997 222 233444445556 899999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.47 E-value=6.5e-08 Score=90.13 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=40.7
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
+.+++.+ +|+.++|+|+||+|||||+|+|++. ++|++|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~------------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE------------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT------------SCTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc------------CCCCceEEEECCc
Confidence 7788777 8999999999999999999999995 4899999999875
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-07 Score=82.13 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.||||||||+|.|.|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999854
|
| >3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=69.19 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=48.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-|+.| .|.-+ +|..+.|+++|++++++..+.+||+|.++..+.+..+|-|.
T Consensus 16 ~~G~Vik~l~n~~f~V~l~-nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE-NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEETTTEEEEEET-TSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 6789999976777 77655 78899999999999988999999999999876555556553
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-08 Score=104.23 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+...+.+.+.++.+.| +|++|||+
T Consensus 868 ~lLILDEPTs---GLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 908 (972)
T 2r6f_A 868 TLYILDEPTT---GLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908 (972)
T ss_dssp EEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4589999999 999999999999999998876 99999986
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-08 Score=88.95 Aligned_cols=77 Identities=23% Similarity=0.207 Sum_probs=29.5
Q ss_pred EecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc
Q 023887 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
.+|+....++++++. ++|+|+||||||||||+|.|.. ..|++| +.++|.++.... .
T Consensus 6 ~~~~~~~~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~~-----------~~~~~g-i~~~g~~~~~t~---~---- 61 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLTD-----------LYPERV-ISGAAEKIERTV---Q---- 61 (301)
T ss_dssp ------------CEE-----EEEEEETTSSHHHHHHHHHC----------------------------------------
T ss_pred ceECCEEEEcCCCEE-----EEEECCCCCCHHHHHHHHhCCC-----------ccCCCC-cccCCcccCCcc---e----
Confidence 344444455555543 5999999999999999999962 167778 776665543210 0
Q ss_pred eeeeEEEEecC----CCcEEEecCCC
Q 023887 222 TTRHVSLLPLS----GGGYLADTPGF 243 (276)
Q Consensus 222 tt~~~~~~~~~----~~~~iiDtPg~ 243 (276)
....++..+. ....+.||||+
T Consensus 62 -~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 62 -IEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp ----CEEEEC---CCEEEEEEEEC--
T ss_pred -EeeEEEEecCCCcccCcchhhhhhh
Confidence 1123333332 24579999998
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.9e-07 Score=83.11 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.1
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++..++ .++|+|.+|||||||+|+|.|..
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 35677776666 89999999999999999999954
|
| >1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W | Back alignment and structure |
|---|
Probab=98.43 E-value=7.2e-08 Score=69.60 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=46.7
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|++++..+.|||+|.++..+.+..+|.|+
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLD-SGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CEEECCCCCTTTBCCCEES-SSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 6789999956255 77544 57889999999999888999999999999764445566664
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.6e-07 Score=78.62 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|++|||||||+|+|+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999965
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-07 Score=95.96 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=58.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc-cceeeccccccccccccCCCCceeeeEEE--------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQRVGEVSTKSGRGKHTTRHVSL-------- 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~~~~vs~~~g~gk~tt~~~~~-------- 228 (276)
+|++++|+||||+||||||+++.|.... .... .+-|.. ..+.+..+-...+ +.........+.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~~---~q~G-~~vpa~~~~i~~~~~i~~~~----~~~d~l~~~~stf~~e~~~~ 677 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALM---AYIG-SYVPAQKVEIGPIDRIFTRV----GAADDLASGRSTFMVEMTET 677 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH---HTTT-CCBSSSEEEECCCCEEEEEE----C-----------CHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHH---HhcC-cccchhcccceeHHHHHhhC----CHHHHHHhhhhhhhHHHHHH
Confidence 5889999999999999999999874210 0000 011111 1111110100000 000000000000
Q ss_pred ---E--ecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 229 ---L--PLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 229 ---~--~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+ ...+..+|+||||. +++..+...+ .+.+..+.+. + ++++||+.
T Consensus 678 ~~il~~a~~psLlLLDEp~~---Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 678 ANILHNATEYSLVLMDEIGR---GTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp HHHHHHCCTTEEEEEESCCC---CSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHhccCCCEEEEECCCC---CCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 0 11345689999999 8887776665 6788888773 5 99999986
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-08 Score=95.65 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=45.4
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
..++++++.++.++++|+|+||||||||+++|+|.. +|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTAL------------IPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHH------------CCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEccceEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEEcccCc
Confidence 456677777733999999999999999999999955 899999999998876543
|
| >2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=73.19 Aligned_cols=65 Identities=26% Similarity=0.254 Sum_probs=53.9
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccccc
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~ 67 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|++ ...+.+||+|.+++.+++...|.|+.+++|..
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~-dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCF-DGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp EEEEEEEEEETTEEEEEET-TSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 5688999955366 77444 688999999999998 88899999999998755567899999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-07 Score=99.90 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=64.7
Q ss_pred ccchHHHHhhc-c-------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccC-ccccccc-ceeecccccccccccc
Q 023887 147 KLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN-WFEPILG-SKWFEDQRVGEVSTKS 216 (276)
Q Consensus 147 ~~~l~~l~~~l-~-------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~-~~~p~~G-~i~~~g~~~~~vs~~~ 216 (276)
...++++++.+ + |++++|+||||+||||||+++ |.... -++. .|-|.+. .+.+...-.. ..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----~aqiG~~Vpq~~~~l~v~d~I~~----ri 839 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----MAQMGCYVPAEVCRLTPIDRVFT----RL 839 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----HHTTTCCEESSEEEECCCSBEEE----EC
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----HhheeEEeccCcCCCCHHHHHHH----Hc
Confidence 34556666555 3 799999999999999999999 75310 0000 0122210 1111000000 00
Q ss_pred CCCCceeee-------------EEEEecCCCcEEEecCCCCCCCCChhhH-HHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 217 GRGKHTTRH-------------VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 217 g~gk~tt~~-------------~~~~~~~~~~~iiDtPg~~~~~l~~~~~-~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|........ +......+..+|+||||- +++..+. ..+.+.+..+.+. + +|++||++
T Consensus 840 g~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~---Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 840 GASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGR---GTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp C---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTT---TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred CCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCC---CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 100000000 000112346699999999 9988764 4467888888865 5 99999985
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-07 Score=88.48 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=46.8
Q ss_pred EEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 141 FCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 141 ~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
...|. ....++.+ +.+ +|++++|+|+||+|||||+++|+|.. .|+.|.+.+.|++..+
T Consensus 52 ~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~------------~~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 52 DQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA------------SADIIVLALIGERGRE 111 (347)
T ss_dssp CSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHH
T ss_pred ceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCEEEEEEecccHHH
Confidence 33444 34578888 666 89999999999999999999999965 8899999888876433
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.2e-08 Score=93.53 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=36.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+|.+++|+|+||||||||++.|+|. +.|.+|+|.+.+.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl------------l~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ------------FEQQGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH------------hhhcCCeEEEecCccc
Confidence 5789999999999999999999994 4899999999876654
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-07 Score=85.10 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=46.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eEEEEecCC-CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HVSLLPLSG-GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~~~~~~~~-~~~i 237 (276)
.++|||.||||||||+|+|.+.. ..++..++ ||+ ..+.+...+ ...+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~--------------------------~~v~~~pf----tT~~~~~g~~~~~~~~i~l 123 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE--------------------------SEAAEYEF----TTLVTVPGVIRYKGAKIQM 123 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC--------------------------CCGGGTCS----SCCCEEEEEEEETTEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCC--------------------------CcccCCCC----ceeeeeeEEEEeCCcEEEE
Confidence 79999999999999999999853 12233333 442 334455443 4579
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||||+...... ....-.+.+..++...
T Consensus 124 ~D~pGl~~~a~~--~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 124 LDLPGIIDGAKD--GRGRGKQVIAVARTCN 151 (376)
T ss_dssp EECGGGCCC-------CHHHHHHHHHHHCS
T ss_pred EeCCCccCCchh--hhHHHHHHHHHHHhcC
Confidence 999999543221 2223345566666655
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-07 Score=83.56 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++|+|+||||||||+|+|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999854
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=9e-07 Score=78.76 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-07 Score=86.94 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+|+|||.. +||....+.+.+.+.++.+.| ++++||++
T Consensus 303 ~p~~lllDEpt~---~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 303 RLDAFFIDEGFS---SLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp TCCEEEEESCCT---TSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred CCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 445699999999 999999999999999998776 99999986
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-07 Score=76.45 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=61.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+.+. .+.........++.++.+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEA 157 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEe
Confidence 34445688999999999997652 22234444444433 4678999999999954321 122334445667888999
Q ss_pred ecCCccchHHHHhhc-----cCCEEEEEecCCCChhH
Q 023887 143 SVESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-----~g~~v~lvG~sGvGKST 174 (276)
|+.++.+++.+...+ +.....--+.+++||||
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 999998887776653 11111122556999997
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.9e-08 Score=87.92 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=36.1
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+.++|. ...++++++.+ +|++++|+|+||+|||||+++|+|.
T Consensus 106 ~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 106 NIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3444454 45789999988 8999999999999999999999983
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.1e-06 Score=69.73 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|++|||||||+|.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.7e-07 Score=86.22 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=40.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|.+++|+|+||||||||+|+|.|.....+..+..+..+|+.|.+.+.+.++..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~ 72 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDW 72 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhh
Confidence 688999999999999999999999542122333444568899999888765443
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=76.23 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|++|||||||+|.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999954
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=89.26 Aligned_cols=44 Identities=34% Similarity=0.372 Sum_probs=30.7
Q ss_pred cCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++..+..+|.....++++++. ++|+|+||||||||||+|+|..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEecceeECCEEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCC
Confidence 3445555666655555555543 5999999999999999999975
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-07 Score=75.66 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|++++|+|+||||||||+++|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999984
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=75.73 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.+|||||||+|.|.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=86.73 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|++|||||||||.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999954
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-07 Score=75.81 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=62.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHH----HHHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l----~~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..+. +...+..++ ......++|+++|.||+|+.++. ..+........++.+.+.+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 3445677999999999997653 222233332 22223578999999999996431 1122334455678889999
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhH
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKST 174 (276)
|+.++.+++++...+.......-|+.++||||
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 99999988887776522112223788999986
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-07 Score=83.94 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=37.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+|. +.|++|+|.+.+.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH------------HHHcCCeEEEEeecccc
Confidence 6899999999999999999999994 48999999999877643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=82.71 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=33.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC---CCc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGG 235 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~ 235 (276)
-.+++|+|.+|||||||+|.|.|.. ...+...+| +|+...+.... ...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~-------------------------~~~v~~~~g----~t~~~~~~~~~~~~~~~ 73 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER-------------------------ISIVEDTPG----VTRDRIYSSAEWLNYDF 73 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE-------------------------EC---------------CEEEECTTCSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC-------------------------CcccCCCCC----cceeEEEEEEEECCceE
Confidence 4589999999999999999999843 222333334 55444444433 256
Q ss_pred EEEecCCCC
Q 023887 236 YLADTPGFN 244 (276)
Q Consensus 236 ~iiDtPg~~ 244 (276)
.++||||+.
T Consensus 74 ~liDT~G~~ 82 (456)
T 4dcu_A 74 NLIDTGGID 82 (456)
T ss_dssp EEECCCC--
T ss_pred EEEECCCCC
Confidence 899999984
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.5e-07 Score=82.25 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=33.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc----cc-eeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GS-KWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~----G~-i~~~g~~~ 209 (276)
+|++++|+|+||+|||||++.|++.. ..+|++ |. +++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~----------~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV----------QLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT----------TSCGGGTSCSCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------ccchhcCCCCCeEEEEeCCCC
Confidence 79999999999999999999999854 114565 56 78777543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=79.83 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc------------------cccc-cCCCC--
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE------------------VSTK-SGRGK-- 220 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~------------------vs~~-~g~gk-- 220 (276)
+.|.|+||+|||||+++|++.. +.|..|.+.+++..... +... .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l-----------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI-----------FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH-----------SCTTCCC------------------CCEECSSEEEECCC----CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----------cCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchH
Confidence 8999999999999999999832 26666776655533220 0000 00000
Q ss_pred ---c------eeeeE------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 221 ---H------TTRHV------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 221 ---~------tt~~~------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
. .+... +-+...+..+++|+|.. ++......+.+.+.+..+.. +|+++|+.+
T Consensus 108 ~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~----L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS----LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp HHHHHHHHHTTTTC------------CCEEEEEECTTS----SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred HHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc----cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 0 00000 00011345789999987 77777778888888865543 899999753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-07 Score=77.76 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+||||||||||+|+|.|.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999984
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=9.9e-07 Score=77.97 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=79.59 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=71.2
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHH
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
.+|+|..++ .++. +.++...+++++ ....|.+|++|.|..+++..+ ..++.+++++..+......+..|
T Consensus 53 ~Gn~E~~yL-~~L~-~e~~~~rler~l-----~~~~P~IIltrg~~~peelie----~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLLP-DEERKGRMRKLC-----RPETPAIIVTRDLEPPEELIE----AAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHSC-HHHHTTHHHHHC-----CTTCCCEEECTTCCCCHHHHH----HHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-HhcC-HHHHHHHHHHHh-----cCCCCEEEEeCCCCCCHHHHH----HHHHCCCeEEEECCchhHHHHHH
Confidence 455565544 3333 233444677776 367788899999998775443 34456889998888888888877
Q ss_pred Hhhc-c----------------CCEEEEEecCCCChhHHHHHHcCC
Q 023887 154 LQRL-R----------------DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 154 ~~~l-~----------------g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++ + |+.++|+|+||+|||||.+.|...
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 7665 2 788999999999999999999863
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.5e-06 Score=69.09 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999843
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=74.25 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.9
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccc
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (276)
++..|...+ +|+.++|+|+||+|||||++.|++.. ..+| ..|.+++++..
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~----------~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC----------QLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT----------TSCGGGTCCSSEEEEEESSS
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH----------hCchhcCCCCCeEEEEECCC
Confidence 344444443 78999999999999999999999842 1133 45677777654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=67.47 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+++|+|++|||||||+|.|.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.4e-06 Score=73.96 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5e-07 Score=92.00 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|++++|+||||+||||||+++.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999999843
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-06 Score=82.76 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.||||||||+|.|.+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-06 Score=80.82 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC---CCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~~ 236 (276)
-+++|+|.+|||||||+|.|.|.. ...++..+| +|+...+.... ....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~-------------------------~~~v~~~~g----~T~d~~~~~~~~~~~~~~ 54 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGER-------------------------ISIVEDTPG----VTRDRIYSSAEWLNYDFN 54 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEE-------------------------CC---------------CEEEECTTCSSCCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-------------------------ceeecCCCC----CccceEEEEEEECCceEE
Confidence 369999999999999999999843 122233334 55544444433 2468
Q ss_pred EEecCCCC
Q 023887 237 LADTPGFN 244 (276)
Q Consensus 237 iiDtPg~~ 244 (276)
++||||..
T Consensus 55 l~DT~G~~ 62 (436)
T 2hjg_A 55 LIDTGGID 62 (436)
T ss_dssp EEC-----
T ss_pred EEECCCCC
Confidence 99999983
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.2e-07 Score=82.66 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
+.+++|+|+||||||||+|.|.+.. .+..|++.+.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~------------~~~~~~v~V~~~d 111 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML------------TERGHKLSVLAVD 111 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEECC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh------------hhcCCeEEEEeec
Confidence 6789999999999999999999843 5556666555443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=77.12 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|+||||||||+|+|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999854
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-06 Score=76.86 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|+|||||+|.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=98.15 E-value=5.8e-06 Score=73.24 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.+|||||||+|.|.|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.9e-06 Score=73.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.||||||||+|.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.9e-06 Score=72.35 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++|+|++|||||||+|.|++..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999854
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9.3e-07 Score=75.28 Aligned_cols=26 Identities=38% Similarity=0.647 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+|+|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999999999865
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-06 Score=84.89 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=39.4
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+++.+ +|+.++|+|+||||||||+|+|+|.. +|++|.|.+++..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i------------~~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI------------PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS------------CTTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC------------CCCCCEEEEcCcc
Confidence 44555555 78889999999999999999999955 8999999988764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.5e-07 Score=83.18 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=37.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+|. +.|++|+|.+.+.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCCCSC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh------------ccccCCEEEEecccccc
Confidence 6899999999999999999999994 48999999999877643
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8.8e-07 Score=77.45 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+....++++++.+ +|.+++|+|+||||||||+++|.+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999988 7889999999999999999999884
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=98.10 E-value=9.1e-06 Score=72.94 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
--.++|+|.+|||||||+|+|+|..
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999965
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.7e-06 Score=67.89 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999854
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-07 Score=89.03 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=63.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc--eeecccccc-cccc---ccCCC--Cceee-eEEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS--KWFEDQRVG-EVST---KSGRG--KHTTR-HVSL 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~--i~~~g~~~~-~vs~---~~g~g--k~tt~-~~~~ 228 (276)
+|++++|+|+||+|||||++.+++.. .|. |+ +++..++.. .+.. ..+.. +.... ...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~------------~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~ 346 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA------------CAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKI 346 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH------------HTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH------------HhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEE
Confidence 79999999999999999999999854 443 54 344333211 0000 00100 00000 0111
Q ss_pred E---------------------ecCCCcEEEecCCCCCCCCChh-----hHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 L---------------------PLSGGGYLADTPGFNQPSLLKV-----TKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~---------------------~~~~~~~iiDtPg~~~~~l~~~-----~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+..+++| |.. ++|.. ..+.+.+++..+++.| +++++|+.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~---~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLS---ALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHH---HHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChH---HHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1 1123458999 988 77766 6778888888888877 89999986
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-07 Score=85.76 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=39.8
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++++ ..-+|..++|+|+||+|||||+++|++.. .|.+|+|.+.+.++
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l------------~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL------------NSSERNILTVEDPI 205 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH------------CCTTSCEEEEESSC
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEEecccc
Confidence 45555 23478899999999999999999999954 78899999888766
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-06 Score=70.00 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|.+|||||||+|.|.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999843
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-06 Score=80.13 Aligned_cols=78 Identities=22% Similarity=0.144 Sum_probs=41.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~i 237 (276)
.+.+++|+|.||||||||+|+|.+... ....+..+..+|..|.+.+.+.++..+..... .... ......+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~-------p~~~--~~~~i~l 90 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHK-------PASK--IPAFLNV 90 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHC-------CSEE--ECCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccC-------cccc--cccccEE
Confidence 567899999999999999999998631 11111222246667777666554433221100 0000 1123578
Q ss_pred EecCCCCC
Q 023887 238 ADTPGFNQ 245 (276)
Q Consensus 238 iDtPg~~~ 245 (276)
+||||+..
T Consensus 91 vDtpGl~~ 98 (396)
T 2ohf_A 91 VDIAGLVK 98 (396)
T ss_dssp EECCC---
T ss_pred EECCCccc
Confidence 89999854
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-06 Score=84.88 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-.++|+|++|||||||+|.|.+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999999853
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-06 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=20.5
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHc-CCC
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-SSP 183 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~-g~~ 183 (276)
....+++.+ +|++++|+|+||||||||+++|. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345666666 79999999999999999999999 854
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-06 Score=75.05 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~ 208 (276)
+|++++|+|+||||||||+++|.+.. .| ..|.|.+++..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~------------~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL------------SAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH------------HHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------hhcCCceEEEecCCCc
Confidence 58899999999999999999999954 43 46677766644
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.4e-07 Score=75.49 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeecccccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEV 212 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~~~v 212 (276)
++++|+|+||+|||||+++|.+ +|+|. .|.|.+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~------------~~~~~g~~~G~I~~dg~~i~~~ 46 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP------------ILRERGLRVAVVKRHAHGDFEI 46 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH------------HHHHTTCCEEEEEC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHH------------HhhhcCCceEEEEEcCcccccC
Confidence 5799999999999999999999 55888 89999999876554
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.3e-06 Score=66.50 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999999854
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-06 Score=66.43 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.4e-06 Score=79.07 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=33.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceee---cccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWF---EDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~---~g~~ 208 (276)
+|.+++|+|+||||||||+++|.+.. . |++|+|.+ ++..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l------------~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL------------SRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH------------TTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH------------hhCCCCCeEEEEecCCcc
Confidence 57899999999999999999999954 5 78888887 6644
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-06 Score=78.73 Aligned_cols=76 Identities=26% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
+.+++|+|.||||||||+|+|.+.. ..+..+..+...|..|.+.+.+.++..+...... .... .....++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~-------~~~~--~~~i~lv 71 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP-------ERIL--PTTMEFV 71 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCC-------SEEE--CCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecc-------ccee--eeEEEEE
Confidence 4579999999999999999999843 1112222234466777776665543333211110 0011 1235688
Q ss_pred ecCCCC
Q 023887 239 DTPGFN 244 (276)
Q Consensus 239 DtPg~~ 244 (276)
||||..
T Consensus 72 DtpGl~ 77 (363)
T 1jal_A 72 DIAGLV 77 (363)
T ss_dssp ECCSCC
T ss_pred ECCCCc
Confidence 999984
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.8e-06 Score=66.16 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999854
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.9e-06 Score=65.71 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.5e-06 Score=66.67 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.5e-06 Score=76.69 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=25.8
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHc
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++..|...+ +|++++|+|+||+|||||++.|+
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 455565554 78999999999999999999553
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=67.84 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=26.4
Q ss_pred chHHHHh-hc-cCCEEEEEecCCCChhHHHHHHcC
Q 023887 149 GLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 149 ~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++.+.. -+ +|+.++|+|+||+|||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444443 23 789999999999999999999986
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-06 Score=78.77 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=28.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++++++.. ++.+++++|++|+|||||+|.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455666655 6789999999999999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-06 Score=68.83 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=59.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
+....+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+... .+........++++++.+|
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 159 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEEC
T ss_pred hHHHHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 3344678999999999997642 2223344443333 23789999999999975421 1222334455678899999
Q ss_pred cCCccchHHHHhhc----cCCEEEEEecCCCChhH
Q 023887 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKST 174 (276)
+.++.+++++...+ ....----..+|++||+
T Consensus 160 a~~g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 99999888776654 11111122456777776
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-06 Score=71.76 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999853
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=64.16 Aligned_cols=90 Identities=9% Similarity=0.096 Sum_probs=60.6
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEeCCCCCCHHHHHHHHHHh---
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEEVLNTWKSRL--- 132 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~-----------~~~~~ivlnK~Dl~~~~~~~~~~~~~--- 132 (276)
..+.+..+.++|.+++|+|+..+. +...+..++...... ++|+++|+||+|+.+....+.+...+
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 155 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHL-RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT 155 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHH-HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch
Confidence 344445678999999999998653 233444444443332 88999999999998652222221211
Q ss_pred ---hhcCceeEEEecCCccchHHHHhhc
Q 023887 133 ---HTWGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 133 ---~~~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
...++.++.+|+.++.+++++...+
T Consensus 156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 156 TLMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp HHHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hhccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 3456788999999999988877654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-06 Score=84.57 Aligned_cols=25 Identities=44% Similarity=0.593 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-.++|+|.+|||||||+|.|.+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC
Confidence 4689999999999999999999843
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.2e-05 Score=67.86 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|.+|||||||+|+|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999965
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-06 Score=65.42 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 368999999999999999999754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.7e-06 Score=65.40 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998743
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=70.74 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.3
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|+.++|+|+||||||||+|+|.+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999854
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-06 Score=75.15 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=30.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHc---CCCCCCccccccCcccccccceeecc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~---g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++++++|+|+||||||||+++|+ |.. .|+.|++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~------------~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ------------HLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC------------CEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe------------EecHHHHHHHH
Confidence 56899999999999999999999 865 56667665543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=9.8e-06 Score=64.77 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999974
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.95 E-value=9.2e-06 Score=64.60 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|++|||||||+|.+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-05 Score=62.79 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=60.5
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGY 137 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~ 137 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.+....+.+...+ ...++
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 157 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 157 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce
Confidence 344455788999999999998763 3444444444433 2678999999999997632222222222 23456
Q ss_pred eeEEEecCCccchHHHHhhc
Q 023887 138 EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l 157 (276)
.++.+|+.++.+++++...+
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHH
Confidence 78899999999998887654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-05 Score=70.88 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=32.6
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+|+|+|.. +||....+.+.+.+.++.+.. +|++||+.
T Consensus 244 ~lllDEp~~---~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~ 282 (322)
T 1e69_A 244 FYVLDEVDS---PLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 489999999 999999999999999985422 99999985
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=67.12 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998743
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=7.4e-06 Score=68.76 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.0
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++.+++..+...++++|++|||||||+|.+.+..
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666655666689999999999999999999743
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-06 Score=70.00 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|+||||||||+|.|.+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=8.9e-06 Score=65.14 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999999843
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=70.28 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
--.++|+|.+|||||||+|+|.|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999964
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.93 E-value=8.7e-06 Score=65.21 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999999743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=65.35 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.92 E-value=7e-07 Score=78.25 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
.+++|+||||||||||+++|+|.. .|++|.|.++|.++.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~------------~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL------------IPDLTLLHFRNTTEA 66 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH------------SCCTTTC--------
T ss_pred cEEEEECCCCCCHHHHHHHHhccc------------ccCCCeEEECCEEcc
Confidence 567899999999999999999955 899999999998873
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-05 Score=68.11 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|++++|+|+||+|||||++.+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999998863
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.2e-05 Score=64.47 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999743
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=64.78 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=65.09 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998744
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=64.83 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|+|.+|||||||+|.|.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999985
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=66.34 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999999843
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-06 Score=82.37 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.|-.++|+|++|||||||+|.|.+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-06 Score=76.63 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=35.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.+++|+|+||||||||||.|.+..... .=-...|+.|+|.++|..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~----~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGY----KIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCC----CEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCC----cEEEEEecCcccCccHHHHhC
Confidence 478999999999999999999853100 000126789999999887654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=8.7e-06 Score=77.36 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++.+ .+..++|+|+||||||||||+|++..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3444445 57899999999999999999999854
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=67.41 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++...+..+++++|++|||||||+|.+.+..
T Consensus 14 l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 14 LASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp ----------CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHhhccCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455555556689999999999999999999743
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.9e-05 Score=62.74 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (276)
|...+.+..+.++|.+++|+|+..|.. ...+. .++..... .++|+++|.||+|+.+.... +.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPAS-FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 334455567889999999999976532 22332 44444443 38899999999999764211 12
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ ..+.+|+.++.+++++...+
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 2233344566 78889999888888876654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-05 Score=65.83 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|++|||||||+|.|.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999999743
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=62.98 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=60.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+....+.+... +...+++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE
Confidence 34445678999999999998763 34455555544433 57899999999999763222222222 2334667
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp EEECBTTTTBTHHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHHH
Confidence 8899999998888877654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=63.44 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999743
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-05 Score=65.91 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999999854
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-05 Score=65.14 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999999844
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.8e-06 Score=70.92 Aligned_cols=27 Identities=44% Similarity=0.614 Sum_probs=24.6
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+|+.++|+||||||||||+|+|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 379999999999999999999999754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=62.43 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-06 Score=69.79 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
|++++|+|+||||||||++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56899999999999999999986
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=65.08 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-05 Score=65.39 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|.+|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-05 Score=64.74 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=59.9
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHH----------HHHHHHHh
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV----------LNTWKSRL 132 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~----------~~~~~~~~ 132 (276)
+-..+.+..+.++|.+++|+|+..|.......+.++...+. .++|+++|.||+|+.++.. .+......
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 33344455788999999999997653222222244444443 3889999999999965432 22223334
Q ss_pred hhcCc-eeEEEecCCccchHHHHhhc
Q 023887 133 HTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 133 ~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
..+++ +.+.+|+.++.+++++...+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 149 KQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHcCCceEEEccCCCCCCHHHHHHHH
Confidence 55675 78889999888888776653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-05 Score=63.64 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=58.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.++. ..+.........+++++.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999997653 22334445444332 578999999999997532 11222233445678889999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 155 a~~~~gi~~l~~~l 168 (180)
T 2g6b_A 155 AKTGLNVDLAFTAI 168 (180)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99998888876654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=2.2e-06 Score=79.46 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc----cceeec
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~----G~i~~~ 205 (276)
|++++|+|+||+|||||+++|+|.. .|++ |+++++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~------------~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF------------NTTSAWEYGREFVF 208 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT------------TCEEECCTTHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh------------CCCcchhhHHHHHH
Confidence 8999999999999999999999954 7777 887763
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=62.55 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=61.0
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........+++++.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQA-SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMET 154 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEE
Confidence 34445678999999999987652 22345555544443 367899999999996532 1223334445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 155 Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 155 SAKTATNVKEIFYEI 169 (181)
T ss_dssp CSSSCTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999998888877654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=9e-06 Score=65.30 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998743
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=65.62 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|++|||||||+|.|.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999843
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=65.87 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.1e-06 Score=73.78 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=34.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHc---CCCCCCccccccCccccccccee--------eccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~---g~~~~~~~~~~~~~~~p~~G~i~--------~~g~~~ 209 (276)
+|.+++|+|+|||||||++++|+ | ++.|++|.++ .+|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg------------~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN------------WRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT------------CEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------------CCcCCCCceehHhHHHHHHcCCCc
Confidence 68899999999999999999999 7 4488999998 677655
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.7e-05 Score=65.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998643
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-05 Score=63.53 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCCHHHHHHHHHHh--h---hc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEVLNTWKSRL--H---TW 135 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~~~~~~~~~~~~--~---~~ 135 (276)
..+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+....+.+...+ . ..
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCC
Confidence 344455788999999999997642 22233344433322 478999999999997642222232322 1 23
Q ss_pred CceeEEEecCCccchHHHHhhc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l 157 (276)
++.++.+|+.++.+++++...+
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHH
T ss_pred ceEEEEccCCCCcCHHHHHHHH
Confidence 5678999999999988877654
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=64.29 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=65.91 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.+|||||||+|.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998744
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=6.5e-06 Score=68.85 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|||||||+|.|.|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=64.87 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|++|||||||+|.|.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998743
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.8e-05 Score=64.52 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999743
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.8e-05 Score=64.08 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=61.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.++.. .+........++++++.+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 34455788999999999997652 22334445444443 4789999999999965321 122233445567899999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 165 Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 165 SAKENINVKQVFERL 179 (189)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999999988877654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.8e-05 Score=66.72 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999743
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.83 E-value=2.1e-05 Score=62.21 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998743
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6.6e-05 Score=60.13 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=59.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+....+.+... +...+++
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE
Confidence 34455678999999999998764 33344444433322 57899999999999764222222222 2234567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHHH
Confidence 8889999998888876654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=64.97 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999743
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=66.23 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|++|||||||+|.|.+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999999743
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.8e-05 Score=63.49 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999743
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-05 Score=65.27 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=58.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+........++++++.+|
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 162 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 162 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 34455688999999999987652 22334444443332 3689999999999953221 1122233345678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.+...+
T Consensus 163 a~~~~gi~~l~~~l 176 (213)
T 3cph_A 163 AKNDDNVNEIFFTL 176 (213)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988887766543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.3e-06 Score=69.56 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|+||||||||+++|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999999873
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.8e-06 Score=66.87 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++++|++|||||||+|.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999853
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-06 Score=70.12 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce--eeccccc
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRV 209 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i--~~~g~~~ 209 (276)
+...... +|++++|+|+||||||||.++|.+.. . ..|.+ ++++..+
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l------------~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML------------Y-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH------------H-HTTCCEEEEEHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH------------H-hcCceEEEecCchh
Confidence 3334333 78999999999999999999999854 3 55776 6666554
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.7e-05 Score=77.78 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999965
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.8e-07 Score=88.86 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=59.6
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~ 228 (276)
.++.|....+|++++|+|+||+|||||+|.|.+.. . .....++...+.|+|+++...+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~------------~----------~~~~~i~V~~~iGerttev~el 198 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI------------A----------QEHGGISVFAGVGERTREGNDL 198 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH------------H----------HHTCCCEEEEEESSCHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh------------h----------hccCcEEEEeeeccCchHHHHH
Confidence 56666666699999999999999999999998743 0 1122334444666667654443
Q ss_pred Ee-cC-CC---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEee
Q 023887 229 LP-LS-GG---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIH 273 (276)
Q Consensus 229 ~~-~~-~~---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H 273 (276)
+. +. .+ .+..|+|+++.. .....-.+.++|++.....+++..-
T Consensus 199 ~~~l~~~~~l~~tvvv~~~~~d~pg~r~~--~~~~~ltiAEyFrd~~G~~VLl~~D 252 (473)
T 1sky_E 199 YHEMKDSGVISKTAMVFGQMNEPPGARMR--VALTGLTMAEYFRDEQGQDGLLFID 252 (473)
T ss_dssp HHHHHHTSGGGGEEEEEECTTSCHHHHHH--HHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHhhhcCCcceeEEEEEcCCCCHHHHHH--HHHHHHHHHHHHHHhcCCcEEEEec
Confidence 32 10 00 134577877321 1222336777787743333555443
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.6e-05 Score=78.53 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++-.++|+|.+|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999999965
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=64.68 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998743
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5e-05 Score=62.16 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=59.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.+....+.+...+. ..+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE
Confidence 34455678999999999997663 23344444433322 4789999999999976432233323222 33567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHH
Confidence 8889999998888876654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.3e-05 Score=65.60 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 479999999999999999999743
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.3e-06 Score=76.64 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|+|||||+|.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=65.20 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999999743
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.4e-05 Score=62.32 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999974
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=4.1e-05 Score=63.46 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=62.8
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+....+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.++. ..+........++++++.
T Consensus 86 ~~~~~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 86 HSLAPMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred HhhhHHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 334445688999999999997653 33345555544433 378999999999996421 123334445667888999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 165 ~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 165 TSAKNAINIEELFQGI 180 (192)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHH
Confidence 9999999988887765
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.2e-05 Score=63.49 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999974
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=64.78 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred cccchhccccEEEEEEEcCCCCC-----CHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAE--STGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~-----~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~ 140 (276)
+.+..+.++|.+++|+|+..|.. +...+.+++...+ ..++|+++|.||+|+.+....+.....+...++ .++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 33456789999999999974421 1123334443321 257899999999999765434444556667788 899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 170 ~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEV 186 (198)
T ss_dssp ECBGGGTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHH
Confidence 99999999988876654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=63.39 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-.++++|.+|||||||+|.|.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=64.75 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999998743
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=8e-06 Score=72.39 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=32.5
Q ss_pred eeE-EEec-CCccchHHHHhhc-c---CCEEEEEecCCCChhHHHHHHcCC
Q 023887 138 EPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 138 ~~~-~~s~-~~~~~l~~l~~~l-~---g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.+ .++| .....++++++.+ + |++++|+|+||+||||+.++|.+.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -----------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344 5666 5566899999987 5 999999999999999999999873
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=6.1e-05 Score=60.01 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=58.2
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .+.|+++|.||+|+.+....+.+...+ ...++++
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRE-RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE
Confidence 3344678999999999997663 23344444443332 378999999999997642222222222 1234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWL 156 (164)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEcccCCCcCHHHHHHHH
Confidence 889999999988877654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.8e-05 Score=62.68 Aligned_cols=90 Identities=9% Similarity=0.207 Sum_probs=60.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
..+....+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.++.. .+.........+++++.
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 155 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEE
Confidence 334455688999999999997652 2223334433322 34789999999999965321 22233444556788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 156 ~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 156 TSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EBTTTTBSHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999999988877654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.6e-05 Score=62.77 Aligned_cols=89 Identities=11% Similarity=0.169 Sum_probs=55.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|.||+|+.+.. ..+.........+++++.+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 150 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEE
Confidence 33455678999999999997653 23345555544443 478999999999997521 1122233445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 151 SAKANINVENAFFTL 165 (183)
T ss_dssp CC---CCHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999988888776654
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.9e-05 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.+++|+|.+|||||||+|.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3579999999999999999999743
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.5e-06 Score=75.69 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 68999999999999999999999854
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-05 Score=64.87 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+++++|.+|||||||+|.|.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=7.6e-05 Score=62.79 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999999843
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.4e-05 Score=73.09 Aligned_cols=22 Identities=50% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.||||||||+|+|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.9e-06 Score=68.76 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999864
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-05 Score=62.92 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=59.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.++. ..+.........++.++.+|
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHhccCCEEEEEEeCcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999997652 2233444443333 2578899999999996432 11233344556788899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 159 a~~~~gi~~l~~~l 172 (179)
T 1z0f_A 159 AKTGENVEDAFLEA 172 (179)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999888876553
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.2e-05 Score=65.45 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998743
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.1e-05 Score=63.19 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=58.7
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.++. ..+.........+++++.+
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 3445678999999999997652 22233344433332 578999999999996531 1122233444567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 165 Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 165 SAANGTNISHAIEML 179 (195)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999988888776554
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.2e-05 Score=63.50 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++++|.+|||||||+|.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35689999999999999999999854
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=97.75 E-value=3.4e-05 Score=64.54 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHHHH--------------HHH
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWK 129 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~--------------~~~ 129 (276)
..+.+..+.++|.+++|+|+..+. +...+ +.++..... .++|+++|+||+|+.+..... ...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 344455678999999999997652 22233 344444433 388999999999997653211 122
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ .++.+|+.++.+++++...+
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHHH
Confidence 23344566 78888998888888876654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.1e-05 Score=63.39 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999974
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=9e-05 Score=61.49 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=58.8
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHH--hcCCCEEEEEeCCCCCCHHH--------------HHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEV--------------LNT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~--~~~~~~~ivlnK~Dl~~~~~--------------~~~ 127 (276)
+...+.+..+.++|.+++|+|+..|.. ...+. .++.... ..++|+++|.||+|+.+... .+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSS-FQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 444455567889999999999976532 22222 3433333 24889999999999965311 111
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ .++.+|+.++.+++.+...+
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHHHH
Confidence 2223344566 78889998888888776553
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.74 E-value=2e-05 Score=74.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.+|||||||+|+|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=60.40 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+....+++...+ ...+++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWT 159 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceE
Confidence 33445678999999999998764 33344444433322 478999999999997642222222222 223457
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 160 IVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEccCCCccCHHHHHHHH
Confidence 8889999988888876654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.74 E-value=3.6e-05 Score=63.59 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999999999743
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.3e-05 Score=63.51 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.|.+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3479999999999999999998743
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=64.46 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=57.3
Q ss_pred cccEEEEEEEcCCC-CCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhhh-cCceeEEEecCCccc
Q 023887 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (276)
Q Consensus 76 nvD~vl~v~~~~~p-~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 149 (276)
++|.+++|+|+..| ..+...+.+++.... ..++|+++|.||+||.++...+........ .++..+.+|+.++.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 79999999999765 234455666554433 357899999999999776544433333333 367889999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 242 v~elf~~l 249 (255)
T 3c5h_A 242 VDLAFSTL 249 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.73 E-value=5.4e-05 Score=63.80 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++|+|++|||||||+|.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999854
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=1.9e-05 Score=66.99 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++++|.+|||||||+|.+..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999543
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.73 E-value=4.4e-05 Score=61.00 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=59.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........+++++.+|
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEE
Confidence 34455678999999999997653 22334445443332 478999999999995422 11222233455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 146 a~~~~gv~~l~~~l 159 (170)
T 1g16_A 146 AKNDDNVNEIFFTL 159 (170)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99998888876654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4e-05 Score=61.33 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.++. ..+.........+++.+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 3444678999999999987653 2334444443332 3578999999999996531 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 150 a~~~~gi~~l~~~l 163 (170)
T 1z08_A 150 AKQNKGIEELFLDL 163 (170)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988877654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=5.4e-05 Score=62.96 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=60.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 150 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEEC
T ss_pred chHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEE
Confidence 34455678999999999997653 22344455444433 478999999999997532 1122233345567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 151 SAKDNINVKQTFERL 165 (203)
T ss_dssp BTTTTBSSHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999988888776654
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.4e-05 Score=60.41 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=57.0
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEec
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (276)
+...+++|.+++|+++..|. +...+.+++..... .++|+++|.||+|+.+... .+........++++++.+|+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 34567899999999997653 23344455443333 3789999999999975321 11222333456788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 151 ~~g~gi~~l~~~l 163 (175)
T 2nzj_A 151 TLQHNVAELFEGV 163 (175)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999988877654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=63.58 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|++|||||||+|.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999985
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=97.72 E-value=3e-05 Score=62.93 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=60.3
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH------------HHHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWK 129 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~------------~~~~ 129 (276)
+...+.+..+.++|.+++|+|+..|.. ...+. .++..... .++|+++|.||+|+.+.... +...
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 68 DYNRLRPLSYRGADVFILAFSLISKAS-YENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TTTTTGGGGGTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhHHhhccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 333445567889999999999976532 22232 34433333 37899999999999654321 2222
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ +.+.+|+.++.+++++...+
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 147 ELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 33345576 78899999999888876654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=2.8e-05 Score=63.32 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+++++|++|||||||+|.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999963
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00012 Score=59.49 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=58.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..+ .+...+..++.... ..++|+++|+||+|+.+....+.+...+. ..++++
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 344567899999999999765 33344444444333 35789999999999976422222223222 234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWL 174 (183)
T ss_dssp EEEBGGGTBTHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHH
Confidence 899999998888876654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=7e-05 Score=60.41 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=60.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
.+....+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.........+++++.+|
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAE-SFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 34445688999999999997652 2334445554443 2358899999999986532 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 152 a~~~~gi~~l~~~l 165 (181)
T 3tw8_B 152 AKENVNVEEMFNCI 165 (181)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988876654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.71 E-value=7.5e-06 Score=75.07 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=34.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++++++|+|++|+||||++..|++. +.+..|++.+.+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~------------l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY------------YAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH------------HHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH------------HHHCCCeEEEEeCCCc
Confidence 5789999999999999999999984 3778888887776653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.1e-05 Score=63.30 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4579999999999999999999854
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.71 E-value=4.2e-05 Score=64.58 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999874
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=75.52 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..|+|+|++++|||||||.|.|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 46899999999999999999974
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=3.9e-05 Score=61.18 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=59.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++. ..+.........+++++.+|
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 34455678999999999997653 2223333333222 2588999999999996532 12223344456688899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 148 a~~~~~i~~l~~~l 161 (168)
T 1z2a_A 148 VKEDLNVSEVFKYL 161 (168)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 99999888876654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-05 Score=60.48 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHH----HHHHHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhc-CceeEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTR----FLVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLF 141 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r----~l~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~ 141 (276)
+.+....++|.+++|+++..|. +...+.. ++......++|+++|+||+|+.++.. .+........+ +++++.
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 3345678999999999997652 1122222 22222235889999999999965321 12222334445 678899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDL 161 (167)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 9999999998887654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=66.60 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+.++|+|+||||||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999865
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7.8e-05 Score=60.72 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHH----HHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~----~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+++..+. +...+..++. .....++|+++|.||+|+.+.. ..+........++.+++.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 81 AMREQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp SSHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEE
Confidence 34445688999999999997652 1222333322 2234678999999999996521 112223344556788999
Q ss_pred EecC-CccchHHHHhhc
Q 023887 142 CSVE-SKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~-~~~~l~~l~~~l 157 (276)
+|+. ++.+++++...+
T Consensus 160 ~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp EBCSSSCBSHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHH
Confidence 9999 888888876553
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.5e-05 Score=61.78 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=58.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|.||+|+.+....+++...+. ..++++
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 3445678999999999997663 33344454443332 4789999999999976422222322221 234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 168 ~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWL 185 (192)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EECcCCCcCCHHHHHHHH
Confidence 889999998888877654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=8.1e-05 Score=59.41 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCcee
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEP 139 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~ 139 (276)
+...+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|.||+|+.++.. .+.........++++
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 67 RFRALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIF 145 (170)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEE
T ss_pred hhhcccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEE
Confidence 33444455778999999999997653 2233444444333 34567889999999975321 122223345567889
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 146 ~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 146 VETSAKNAININELFIEI 163 (170)
T ss_dssp EECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHH
Confidence 999999999988877654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.8e-05 Score=61.25 Aligned_cols=89 Identities=9% Similarity=0.145 Sum_probs=60.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...++.++..... .+.|+++|.||+|+.++. ..+.........+++++.+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 34445678999999999997653 23345555544432 367888899999996431 1122233445567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 149 Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAI 163 (170)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999988877664
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=5.3e-05 Score=62.62 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+.........++.++.+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 163 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 163 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEE
Confidence 33455688999999999997642 22334445444432 4789999999999964211 122223345567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 164 Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 164 SAKTACNVEEAFINT 178 (191)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888876654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.7e-05 Score=62.74 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++|+|.+|||||||+|.|.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999984
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=64.76 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 479999999999999999998743
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.8e-05 Score=65.14 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
+|+.++|+|+||+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999965554
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.67 E-value=7.2e-05 Score=59.10 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.+.+. .+.........+++++.+|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEec
Confidence 3345678999999999987542 2223333333222 23789999999999976321 1222233455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 146 a~~~~gi~~l~~~l 159 (166)
T 2ce2_X 146 AKTRQGVEDAFYTL 159 (166)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999888877654
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=5.5e-05 Score=62.44 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=57.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+....+++...+. ..++.+
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICC 161 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeE
Confidence 3445678999999999997653 2333444443332 25789999999999975422222222221 234567
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 162 ~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWL 179 (188)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999888888877654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=58.54 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..|. +...+..++..... .++|+++|.||+|+.++.. .+.........+.+++.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp --------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEe
Confidence 3344578999999999998653 23344444443332 4789999999999975321 112223344567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 144 Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 144 SAALHHNVQALFEGV 158 (166)
T ss_dssp BGGGTBSHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 999999988876654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.8e-05 Score=67.41 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+.++|+||||||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999865
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.5e-05 Score=62.47 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.|.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999843
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=5e-05 Score=64.60 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=5.3e-05 Score=61.73 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999999743
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00012 Score=61.07 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|+||+|+.+.. ..+.........+++++.
T Consensus 71 ~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 71 RTITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 149 (206)
T ss_dssp TCCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 334455788999999999997653 2334445544433 2468899999999997532 112222334456788899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++.+...+
T Consensus 150 ~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTM 165 (206)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888877664
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=5.2e-05 Score=62.70 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=60.4
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHH--hcCCCEEEEEeCCCCCCH----HHHHHHHHHhhhcCc
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDE----EVLNTWKSRLHTWGY 137 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~--~~~~~~~ivlnK~Dl~~~----~~~~~~~~~~~~~~~ 137 (276)
+...+.+..+.++|.+++|+|+..+.. ...+ ..++...+ ..++|+++|.||+|+.++ ...+........+++
T Consensus 83 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 83 EYDRLRPLSYADSDVVLLCFAVNNRTS-FDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHhHhhccCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 333444557889999999999976522 2222 33333333 347899999999999642 112223344455677
Q ss_pred e-eEEEecCCccchHHHHhhc
Q 023887 138 E-PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~-~~~~s~~~~~~l~~l~~~l 157 (276)
. ++.+|+.++.+++++...+
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHH
T ss_pred CEEEEeecCCCCCHHHHHHHH
Confidence 6 8899999999988876654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.7e-05 Score=61.83 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|.+|||||||+|.|.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999854
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=64.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.9e-05 Score=63.34 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=9.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.2e-05 Score=67.89 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|.|++|||||||+++|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999983
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=63.23 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=59.2
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHH----HHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~----a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..+. +...+..++.. +...++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 160 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 3445678999999999997653 22223332222 222478999999999996531 1233344556678889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 161 Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 161 SAKTRANVDKVFFDL 175 (187)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 999998888876654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00024 Score=66.57 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=58.5
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHHHHHHHh----hhc---CceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTG-IPLTLALNKVELVDEEVLNTWKSRL----HTW---GYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~-~~~~ivlnK~Dl~~~~~~~~~~~~~----~~~---~~~~~~~s 143 (276)
..++++|.+++|+|+..+.... ...+++..++..+ +|+++|+||+|+.+.+........+ ... +++++.+|
T Consensus 94 ~~~~~~D~~ilVvda~~~~~~~-qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 94 SGAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp HHHTTCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred HHHhhCCEEEEEEECCCCCCcH-HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 3578999999999998764343 3344444555445 4889999999999876443333222 222 45789999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.|...+
T Consensus 173 A~~g~gi~~L~~~l 186 (403)
T 3sjy_A 173 ALHKINIDSLIEGI 186 (403)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCcChHHHHHHH
Confidence 99999888776654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.6e-05 Score=60.52 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=58.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.........+++++.+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET 146 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 3445678999999999997653 2222333322222 2478999999999996531 1223334455667889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 147 Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 147 SAKTRANVDKVFFDL 161 (168)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 999999988876654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.6e-05 Score=66.26 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999844
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=7.1e-05 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|.+|||||||+|.|.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999743
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.7e-05 Score=70.43 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=34.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+|++++++|++|+||||++..|++.. .+..|++.+.+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~------------~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH------------HHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEecCCc
Confidence 78999999999999999999999843 77778888766554
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=60.42 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=56.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+++..+. +...+..++..... .++|+++|+||+|+.+.. ..+........++++++.+|
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp -----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999997653 22334444333322 478999999999997522 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 164 a~~~~gi~~l~~~l 177 (190)
T 3con_A 164 AKTRQGVEDAFYTL 177 (190)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.5e-05 Score=67.36 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.+++|+|+||+|||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=6.2e-05 Score=59.96 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=59.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH-----HHHHHHHHhhhcCcee
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE-----VLNTWKSRLHTWGYEP 139 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~-----~~~~~~~~~~~~~~~~ 139 (276)
.+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|+||+|+.++. ..+.........++++
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQ-SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhhhhccCcEEEEEEecCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEE
Confidence 34455678999999999997652 2233444443332 2478899999999996431 1111223334567888
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGI 163 (170)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 999999999988877664
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=60.09 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=59.7
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH-hcCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEecCC
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~-~~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
+.+..+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.....+...+++++.+|+.+
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKT 187 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCC
Confidence 3445678999999999997653 2234445544433 3568999999999943211 12333455566788999999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++...+
T Consensus 188 ~~~i~~l~~~l 198 (208)
T 3clv_A 188 GTNIKNIFYML 198 (208)
T ss_dssp CTTHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 98888876654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.6e-05 Score=61.71 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-.++++|.+|||||||+|.+.+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=97.60 E-value=6e-05 Score=60.04 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=59.63 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=55.7
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH----HHHHHhhh-------cCceeEEE
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN----TWKSRLHT-------WGYEPLFC 142 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~~~-------~~~~~~~~ 142 (276)
+..+|.+++|+++..+ ++.. -..++......++|+++|+||+|+.+..... .+...+.. .+.+++.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 4458999999999764 3322 2223334456789999999999998865432 22233333 34578999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 191 SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 191 SALKRTGLDDAHALI 205 (223)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCcCHHHHHHHH
Confidence 999999888877654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=97.60 E-value=4.7e-05 Score=61.87 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=57.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NTWKS 130 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~~~~ 130 (276)
.+.+..+.++|.+++|+|+..+. +...+. .++..... .++|+++|.||+|+.+.... +....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 44455678999999999997642 222332 33333332 38899999999999654221 11222
Q ss_pred HhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 131 RLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....++ +++.+|+.++.+++++...+
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 3344566 78888998888888776553
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=97.59 E-value=4.1e-05 Score=62.20 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=6.7e-05 Score=61.87 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=60.6
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........++.++.
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQ-TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLE 166 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence 344455688999999999997642 22334455544432 367899999999996531 112223344556788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++.+...+
T Consensus 167 ~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 167 TSALDSTNVELAFETV 182 (193)
T ss_dssp ECTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888876654
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.7e-05 Score=74.12 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.+|+|||||+|.|.+..
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~ 58 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQN 58 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999843
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.8e-05 Score=68.85 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.+++++|.+|||||||+|.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998875
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=7.8e-05 Score=60.19 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=57.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-----cCCC-EEEEEeCCCCCCHHH--HHHHHHHhhhcCceeE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-----~~~~-~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~ 140 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .+.| +++|.||+|+.+... .+.........+++++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred hhhHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 3445678999999999997653 22233344333322 2667 688999999965211 1222233455678899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 151 ~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99999998888876654
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=6e-05 Score=62.21 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|.+|||||||+|.|.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999999743
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.1e-05 Score=65.18 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++++.+ +++.++|+|+|||||||+.+.|+..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678888887 7899999999999999999999853
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=7.1e-05 Score=62.70 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=59.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCc-eeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGY-EPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~ 142 (276)
+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+.........++ .++.+
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 3345678999999999987652 22234444433332 568999999999996521 12223344556788 88999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 173 SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 173 SAKDSSNVEEAFLRV 187 (201)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999888876654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=58.80 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
+....++|.+++|+++..|. +...+..++..... .++|+++|.||+|+.+.. ..+.........+++.+.+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChH-HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 33567899999999997652 22233444333332 378999999999996431 112223344566788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 149 ~~~~~v~~l~~~l 161 (169)
T 3q85_A 149 ALHHNTRELFEGA 161 (169)
T ss_dssp TTTBSHHHHHHHH
T ss_pred ccCCCHHHHHHHH
Confidence 9999988876653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=97.58 E-value=5.9e-05 Score=62.52 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=51.0
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCC-HHH--HHHHHHHhhhcCceeE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~-~~~--~~~~~~~~~~~~~~~~ 140 (276)
.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.+ ... .+........++++++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 345678999999999997653 23344555544443 4789999999999976 211 1233344556778899
Q ss_pred EEecCC-ccchHHHHhhc
Q 023887 141 FCSVES-KLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~-~~~l~~l~~~l 157 (276)
.+|+.+ +.+++++...+
T Consensus 169 ~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSI 186 (208)
T ss_dssp ECCC-------CHHHHHH
T ss_pred EeccCCCCcCHHHHHHHH
Confidence 999988 88877766543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=60.93 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999854
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.57 E-value=6.6e-05 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++++|.+|||||||+|.|.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999743
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2.1e-05 Score=64.44 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|+|||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999863
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.5e-05 Score=61.84 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=23.6
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+.....+|+|+||+|||||+.+|.+..
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 33433489999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=6.7e-05 Score=62.74 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.2e-05 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999998854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=6.5e-05 Score=62.11 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999743
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=7e-05 Score=62.76 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.|.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.7e-05 Score=61.19 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=59.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 156 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEE
Confidence 3345678999999999997653 2223333332222 2378999999999996532 1223334455667889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 157 Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 157 SAKTRANVDKVFFDL 171 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888876654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.7e-05 Score=62.49 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=57.52 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=54.2
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEeCCCCCCHHH---HHHHHHHhh-hcCce
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV---LNTWKSRLH-TWGYE 138 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-------~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~-~~~~~ 138 (276)
....+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+... .+....... ..+.+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred hHHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence 344578999999999997653 22233333322221 5789999999999954321 111122222 23567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 8999999999888876654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.5e-05 Score=61.06 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=58.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHH----HHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~----~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+++..+. +...+..++. .....++|+++|+||+|+.+... .+.........++.++.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQ-SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEE
Confidence 34445678999999999997642 2223333332 22345789999999999965321 12222333456788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 151 ~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQL 166 (181)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 9999999888877654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=97.55 E-value=5.1e-05 Score=63.41 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|.+|||||||+|.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 479999999999999999999743
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=5e-05 Score=63.93 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=58.3
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.++.. .+........++++++.+|
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 344678999999999987642 22344445433222 5789999999999965311 1222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.+...+
T Consensus 180 a~~g~gi~~l~~~l 193 (217)
T 2f7s_A 180 AATGQNVEKAVETL 193 (217)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776554
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0003 Score=56.64 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=55.3
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCH--HHHHHHHHHhh----hcC--ceeEE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~--~~~~~~~~~~~----~~~--~~~~~ 141 (276)
....+.++|.+++|+|+..+.. ...+ +.+......++|+++|+||+|+.+. +........+. .++ ++++.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445789999999999876532 2222 2344445568999999999999763 22222111111 122 46888
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 150 ~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMI 165 (178)
T ss_dssp CCSSSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHH
Confidence 9999988888776653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00032 Score=58.12 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhhh----------
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT---------- 134 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~---------- 134 (276)
+.+....++|.+++|+|+..+. +...+..++.... ..++|+++|.||+|+.+....+++.+.+..
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred HHHHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence 3344568999999999997653 2333444443332 357899999999999752222223333321
Q ss_pred --cCceeEEEecCCccchHHHHhhc
Q 023887 135 --WGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 135 --~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
.+.+++.+|+.++.+++++...+
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred ccceEEEEEeECCcCCCHHHHHHHH
Confidence 23467889999999988877654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=7.6e-05 Score=62.66 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=59.6
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (276)
+...+.+..+.++|.+++|+|+..+.. ...+. .++..... .++|+++|.||+|+.+.... +.
T Consensus 90 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 90 DYDRLRPLSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhHHHHHHHhccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 334445557889999999999976532 22232 34433343 38999999999999764321 11
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ +++.+|+.++.+++++...+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 2223344555 58889999998888876654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.54 E-value=8.4e-05 Score=61.37 Aligned_cols=87 Identities=11% Similarity=0.200 Sum_probs=58.5
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........++++++.+|+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEE-SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASA 167 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHHccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEEC
Confidence 344678999999999997642 22234444444433 578999999999995431 112222334556788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 168 ~~~~gi~~l~~~l 180 (191)
T 3dz8_A 168 KENISVRQAFERL 180 (191)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999988876654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=97.54 E-value=3.8e-05 Score=62.35 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999743
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=97.54 E-value=3.4e-05 Score=63.96 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=5.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++|+|.+|||||||+|.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999985
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=7.2e-05 Score=63.46 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCH--------------HHHHHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDE--------------EVLNTW 128 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~--------------~~~~~~ 128 (276)
+-..+.+..+.++|.+++|+|+..+......+..++..... .+.|+++|.||+|+.++ ...+..
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 33344555788999999999998653222224455444443 37899999999999642 111122
Q ss_pred HHHhhhcCc-eeEEEecCCccc-hHHHHhhc
Q 023887 129 KSRLHTWGY-EPLFCSVESKLG-LDSLLQRL 157 (276)
Q Consensus 129 ~~~~~~~~~-~~~~~s~~~~~~-l~~l~~~l 157 (276)
......+++ ..+.+|+.++.+ ++++...+
T Consensus 167 ~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 167 CAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 233455677 788999998887 88776553
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00015 Score=60.34 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~ 140 (276)
..+....+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.++.. ..........++++++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 344455788999999999997652 2233444443333 24789999999999964321 1122233455678899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 165 ~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 165 ESSARENQLTQGIFTKV 181 (201)
T ss_dssp ECCTTCHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99999998888876654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.53 E-value=2.9e-05 Score=74.12 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.+++++|++||||||+++.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.53 E-value=4.4e-05 Score=60.57 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=57.2
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHH----HHHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l----~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
.+..+.++|.+++|+++..+. +...+..++ ......++|+++|+||+|+.++.. .+.........+++++.+|
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 344678999999999997653 222233222 222235789999999999864321 1222333445678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 147 a~~~~gi~~l~~~l 160 (167)
T 1kao_A 147 AKSKTMVDELFAEI 160 (167)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHH
Confidence 99998888876654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00011 Score=61.00 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++++|.+|||||||+|.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999999743
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00026 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHHHH--HHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 142 (276)
.+.+....++|.+++|+|+..+. +...+.+++... ...++|+++|+||+|+.+.... +.........+++++.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 34445678999999999997652 222333333332 2346899999999999765221 22233445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 155 Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 155 SAKTAHNFGLPFLHL 169 (218)
T ss_dssp BTTTTBTTTHHHHHH
T ss_pred ecCCCCCHHHHHHHH
Confidence 999999888877654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00016 Score=58.85 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+++..+. +...+..++... ...++|+++|+||+|+.+... .+........++++++.+
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIET 145 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 34445678999999999997652 222333333222 235789999999999975321 122223344567788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 146 Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTL 160 (189)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999988888776553
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=8.4e-05 Score=62.35 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=56.2
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHH--------------H
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNTW--------------K 129 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~--------------~ 129 (276)
..+.+..+.++|.+++|+|+..+. +...+ ..++..... .++|+++|+||+|+.+....... .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence 344455678999999999997652 22233 333333333 38999999999999754322111 1
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ .++.+|+.++.+++++...+
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 166 AMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 12223455 67778888888877766553
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=60.11 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-.++++|.+|||||||+|.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999974
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=97.50 E-value=4.6e-05 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00017 Score=59.80 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=57.9
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEeCCCCCCHHH-HHHHHHHhh-hcCc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGY 137 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-------~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~ 137 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+....... ..++
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI 149 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSC
T ss_pred HHhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCc
Confidence 344455678999999999997652 22223333322221 4789999999999974321 122222222 3466
Q ss_pred eeEEEecCCccchHHHHhhc
Q 023887 138 EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l 157 (276)
+++.+|+.++.+++.+...+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 150 PYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp CEEECBTTTTBSHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 88999999999888877664
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=8.1e-05 Score=63.30 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........++.++.
T Consensus 76 ~~~~~~~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 154 (223)
T 3cpj_B 76 RAITSAYYRGAVGALIVYDISKSS-SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTE 154 (223)
T ss_dssp TCCCGGGTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 344556788999999999987653 23345555544443 378899999999996431 112222334556778889
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 155 ~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 155 TSALNSENVDKAFEEL 170 (223)
T ss_dssp CCCC-CCCHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888876654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=97.49 E-value=4e-05 Score=64.97 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=57.9
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
.+.+....++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+..............++.++.+|+.
T Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 79 GLRDGYYIQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCC
Confidence 34445678999999999997642 22233344433332 4789999999999976432222222334457788889988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++.+...+
T Consensus 158 ~~~gi~~l~~~l 169 (221)
T 3gj0_A 158 SNYNFEKPFLWL 169 (221)
T ss_dssp GTBTTTHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888877765544
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.48 E-value=5.4e-05 Score=63.99 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=8.1e-05 Score=62.22 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=59.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.++.. ..+........++.++.+
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 33445688999999999997653 2223444443333 24789999999999964321 122334445567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 168 SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 168 SALTGENVEEAFLKC 182 (200)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888776654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0001 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|.+|||||||+|.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999863
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=8.6e-05 Score=61.92 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC---CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~~~i 237 (276)
+++++|.+|||||||+|.+.+.. ..+.......+ .+.....+..++ ...+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~-----------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 60 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH-----------------------DSMDSDXEVLG----EDTYERTLMVDGESATIIL 60 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----------------------CCC----GGGC----TTEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCc-----------------------CCcCccccccc----eeEEEEEEEECCeEEEEEE
Q ss_pred EecCC
Q 023887 238 ADTPG 242 (276)
Q Consensus 238 iDtPg 242 (276)
+||+|
T Consensus 61 ~Dt~~ 65 (192)
T 2cjw_A 61 LDMWE 65 (192)
T ss_dssp ECCCC
T ss_pred EEecc
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0005 Score=57.35 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=56.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCC---HHHHHHHHHHhh--------
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVD---EEVLNTWKSRLH-------- 133 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~---~~~~~~~~~~~~-------- 133 (276)
+.+....++|.+++|+|+..+. +...+..++.... ..++|+++|.||+|+.+ .++..++.....
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHE-RLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccc
Confidence 3444677999999999997653 2333444443332 25789999999999964 233322221110
Q ss_pred ------hcCceeEEEecCCccchHHHHhhc
Q 023887 134 ------TWGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 ------~~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
..+.+++.+|+.++.+++++...+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHH
Confidence 123467889999999988877654
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=60.21 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|++|||||||+|.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999874
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=1.3e-05 Score=73.26 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=41.3
Q ss_pred ecCCccchHHHHhhc-cC-------CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 143 SVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-~g-------~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+++...++.++..+ .| ..++|+||||+|||||+++|++.... -+.|.+|.+..++.++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQGDM 93 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCHHHH
Confidence 345556677777766 33 67999999999999999999985411 1245677766555443
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=64.98 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=59.6
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHhh-hcC--ceeEEEecCC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLH-TWG--YEPLFCSVES 146 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~-~~~~~~~~~~~~~-~~~--~~~~~~s~~~ 146 (276)
...+.++|.+++|+|+..+ .+......++......++|+++|+||+|+. +.+....+...+. .++ .+++.+|+.+
T Consensus 87 ~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 3467899999999999764 333333333444456789999999999998 5544443333333 333 4788999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++...+
T Consensus 166 g~gv~~L~~~l 176 (308)
T 3iev_A 166 GANLDELVKTI 176 (308)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888877654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.43 E-value=3.7e-05 Score=70.62 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=31.6
Q ss_pred EecCCccchHHHHhhc-cCC------EEEEEecCCCChhHHHHHHcCCC
Q 023887 142 CSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~------~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++....+..+...+ ++. +++|+|+||||||||+++|.+..
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445556677666665 332 89999999999999999998854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0001 Score=58.81 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=56.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
+.+..+.++|.+++|+++..|.. ...+..++..... .++|+++|+||+|+.+... ..........++++++.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQS-LEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHH-HHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcccCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 34456789999999999976521 1222222222221 4789999999999965321 11122333456778899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 146 TSAKLNHNVKELFQEL 161 (172)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHH
Confidence 9999999988877664
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.42 E-value=5.5e-05 Score=69.95 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++|+|.+|||||||||+|.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00012 Score=60.97 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=55.5
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--------HHHHHHHhhhcCce
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--------LNTWKSRLHTWGYE 138 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--------~~~~~~~~~~~~~~ 138 (276)
....+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+... .+.........+++
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~ 172 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEK-SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHhhCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence 344678999999999987642 2223444443333 24789999999999963211 11112333456778
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 173 ~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHH
Confidence 8899999998888776654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=2.1e-05 Score=65.77 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=55.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc--CCCEEEEEeCCCCCCHHHH--------------HHHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST--GIPLTLALNKVELVDEEVL--------------NTWKSR 131 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~--~~~~~ivlnK~Dl~~~~~~--------------~~~~~~ 131 (276)
.+.+..+.++|.+++|+|+..+.......+.++...... ++|+++|.||+|+.+.... +.....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 444456789999999999876532222222333333322 7899999999999764211 111222
Q ss_pred hhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 132 LHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 132 ~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
...+++ +++.+|+.++.+++++...+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 334455 67778888888877766554
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00017 Score=61.71 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.+.+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999743
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=60.92 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhc-CceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.+... .+........+ ++.++.+
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKE-TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 3445678999999999997653 2223444433333 24789999999999965321 11222233333 6788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 170 SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 170 SAKDNFNVDEIFLKL 184 (192)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999988877654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=59.72 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=56.9
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHH---HHHHH--hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAE--STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~--~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..|. +...+..+ +.... ..++|+++|+||+|+.+.+. .+........++++++.+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 150 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQ-SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMET 150 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEE
Confidence 3345678999999999997642 11222222 22222 14789999999999975321 122223345567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~gi~~l~~~l 165 (199)
T 2gf0_A 151 SAKMNYNVKELFQEL 165 (199)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCCCHHHHHHHH
Confidence 999988888876654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.41 E-value=7.5e-05 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999887643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=4.7e-05 Score=61.99 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++|+|+||||||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999854
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00099 Score=61.30 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=60.8
Q ss_pred hccccEEEEEEEcCCCC-CCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccch
Q 023887 74 VANVDHLLLLFSMDQPK-LEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (276)
..++|.+++|+|+..+. ++.....+++..... .++|+++|+||+|+.+....+.....+...+.+++.+|+..+.++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 34689999999986542 344444444443332 389999999999998876555455555566788999999999999
Q ss_pred HHHHhhc
Q 023887 151 DSLLQRL 157 (276)
Q Consensus 151 ~~l~~~l 157 (276)
+++...+
T Consensus 324 ~~l~~~i 330 (357)
T 2e87_A 324 DLVKEEI 330 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887664
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=8e-05 Score=74.61 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|++|+|||||++.|++..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 57889999999999999999999643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=3.4e-05 Score=68.86 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
...++++.+.++.. ++|+|+||+|||||+++|++.. .+ |.+.++|.++
T Consensus 33 ~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~------------~~--~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES------------GL--NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT------------TC--EEEEEETTTT
T ss_pred HHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc------------CC--CEEEEEcHHH
Confidence 34456666555322 9999999999999999999965 22 5677766554
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=60.97 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 357999999999999999999874
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=60.17 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999974
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00015 Score=60.76 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00021 Score=60.36 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=53.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHH--hcCCCEEEEEeCCCCCCHHHHH--------------HHHHHhh
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEVLN--------------TWKSRLH 133 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~--------------~~~~~~~ 133 (276)
+..+.++|.+++|+|+..+. +...+. .++.... ..++|+++|.||+|+.+..... +......
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPN-SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp -----CEEEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 34578999999999987652 222232 3433333 2478999999999997643221 1123344
Q ss_pred hcCc-eeEEEecCCccchHHHHhhc
Q 023887 134 TWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 ~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.+++ .++.+|+.++.+++++...+
T Consensus 179 ~~~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 179 SVGAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp HTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 5676 78899999888888876654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00059 Score=55.61 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=54.1
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH----HHHHHhhhcC-ceeEEEecCCcc
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN----TWKSRLHTWG-YEPLFCSVESKL 148 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~~~~~-~~~~~~s~~~~~ 148 (276)
+..+|.+++|+++..+. .... ...+......++|+++|+||+|+.+++..+ .....+...+ ++++.+|+.++.
T Consensus 102 ~~~~~~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPP-QDSD-LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp CTTEEEEEEEEETTSCC-CHHH-HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred CcCceEEEEEecCCCCC-CHHH-HHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 34569999999986542 2221 122333355689999999999998654332 2223333333 578999999999
Q ss_pred chHHHHhhc
Q 023887 149 GLDSLLQRL 157 (276)
Q Consensus 149 ~l~~l~~~l 157 (276)
+++++...+
T Consensus 180 gv~~l~~~l 188 (195)
T 3pqc_A 180 GISELLDLI 188 (195)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988877654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00016 Score=60.94 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|.||+|+.++.. .+.........++.++.+
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 33445678999999999987652 2223444444333 24678999999999964311 112223334557788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 169 Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 169 SAKESDNVEKLFLDL 183 (201)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888776654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00035 Score=55.18 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=55.6
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
....++|.+++|+++..+.... ..+.+++ +..++|+++|.||+|+.+... ....+.++++ +.+.+|+.++.+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 75 RALEDAEVVLFAVDGRAELTQADYEVAEYL---RRKGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp HHTTTCSEEEEEEESSSCCCHHHHHHHHHH---HHHTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBTTTTBS
T ss_pred HHHHhCCEEEEEEECCCcccHhHHHHHHHH---HhcCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEecccCCC
Confidence 3568999999999997653221 1233333 446899999999999976521 1123346677 789999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 149 v~~l~~~l 156 (161)
T 2dyk_A 149 LEELLEAI 156 (161)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88876653
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00045 Score=57.58 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=57.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........++++.+.+|+.
T Consensus 92 ~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 3467899999999997652 22234455444332 478999999999996531 1122223344567788999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
.+.+++++...+
T Consensus 171 ~~~~v~~lf~~l 182 (195)
T 3cbq_A 171 LHHNTRELFEGA 182 (195)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999888876653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00071 Score=54.61 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=54.3
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHH---HHHHHh---cCCCEEEEEeCCCCC-------CHHHHHHHHHHhhhc-Cce
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEAES---TGIPLTLALNKVELV-------DEEVLNTWKSRLHTW-GYE 138 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~~---~~~~~~ivlnK~Dl~-------~~~~~~~~~~~~~~~-~~~ 138 (276)
...++|.+++|+|+..|. +...+..+ +..... .++|+++|.||+|+. +.+..+ ...... +++
T Consensus 69 ~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~---~~~~~~~~~~ 144 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR---ALXADMKRCS 144 (178)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH---HHHHHHSSEE
T ss_pred HHHhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH---HHHHhhcCCe
Confidence 567899999999997653 33345543 333332 478999999999993 222222 223333 568
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
.+.+|+.++.+++++...+
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHH
Confidence 8999999998888876553
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=58.59 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=58.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+..++... ...++|+++|.||+|+.++. ...+........+++++.+|
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 3445678999999999997653 222333443322 23578999999999996431 11223344456678889999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 154 a~~~~gi~~l~~~l 167 (186)
T 2bme_A 154 ALTGENVEEAFVQC 167 (186)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776553
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.34 E-value=7.8e-05 Score=62.95 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|..++|+|+||||||||.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 78899999999999999999998643
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=59.53 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=57.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..|. +...+..++... ...++|+++|.||+|+.+.. ..+........++++++.+
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYEC 169 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred chhhhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEE
Confidence 3445678999999999997653 222233332222 23588999999999996531 1122223344567889999
Q ss_pred ecCCcc-chHHHHhhc
Q 023887 143 SVESKL-GLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~-~l~~l~~~l 157 (276)
|+.++. +++++...+
T Consensus 170 Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 170 SACTGEGNITEIFYEL 185 (196)
T ss_dssp CTTTCTTCHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHH
Confidence 999988 888876654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00044 Score=55.61 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=56.0
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---h----cCCCEEEEEeCCCCCCHHH-HHHHHHHhh-hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---S----TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~~~ 139 (276)
+......++|.+++|+++..+. +...+..++.... . .++|+++|+||+|+.+.+. .+....... ..+.++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQ-SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence 3445678999999999997653 2222333332222 1 5789999999999964221 122222223 345688
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 151 ~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEA 168 (177)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 999999998888776553
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00063 Score=65.51 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=57.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH----HHHHhhhc----CceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTW----GYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~----~~~~~~~~----~~~~~~~s~ 144 (276)
.++++|.+++|+|+..+ ...... +.+..++..++|.++|+||+|+.+++..+. +...+... +++++.+|+
T Consensus 93 ~~~~aD~~ilVvda~~g-~~~qt~-e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEG-PKTQTG-EHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp HTTSCCEEEEEEETTTC-SCHHHH-HHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HHhhCCEEEEEEecCCC-ccHHHH-HHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 57899999999999754 233222 334455677999999999999988654332 22333333 356889999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++.|...
T Consensus 171 ~~g~gI~~L~~~ 182 (482)
T 1wb1_A 171 KTGFGVDELKNL 182 (482)
T ss_dssp TTCTTHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 888888776654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=4.1e-05 Score=63.80 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=52.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc---CCCEEEEEeCCCCCCHHHH--HHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~---~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 142 (276)
.+....+.++|.+++|+|+..+. +...+..++...... ++|+++|+||+|+.+.... +........++++++.+
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 175 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCC
T ss_pred HHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEE
Confidence 33445678999999999997653 333455565544432 6899999999999754211 11122334567788888
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 176 SA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 176 SAKNATNVEQSFMTM 190 (199)
T ss_dssp CC---HHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 998888888877664
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=59.21 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........+++..+.+|
T Consensus 87 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999997653 22334444443332 588999999999995421 11222334455678889999
Q ss_pred c-CCccchHHHHhhc
Q 023887 144 V-ESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~-~~~~~l~~l~~~l 157 (276)
+ .++.+++++...+
T Consensus 166 a~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEA 180 (187)
T ss_dssp SSSCSHHHHHHHHHH
T ss_pred ecCccccHHHHHHHH
Confidence 9 7888888776543
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00075 Score=55.31 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=53.1
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH----HHHHhh-hcCceeEEEecCCccc
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLH-TWGYEPLFCSVESKLG 149 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~----~~~~~~-~~~~~~~~~s~~~~~~ 149 (276)
.++|.+++|+|+..+ .+.... .++......++|+++|+||+|+.++..... +.+.+. ..+.+++.+|+.++.+
T Consensus 104 ~~~~~~i~v~d~~~~-~~~~~~-~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 104 EELKAVVQIVDLRHA-PSNDDV-QMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181 (195)
T ss_dssp TTEEEEEEEEETTSC-CCHHHH-HHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCC-CCHHHH-HHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCC
Confidence 455999999998765 332221 122233457899999999999987653332 222232 1245788999999888
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 182 v~~l~~~l 189 (195)
T 1svi_A 182 KDEAWGAI 189 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.30 E-value=4e-05 Score=75.30 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=33.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-cee-eccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKW-FEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~-~~g~~~ 209 (276)
+|++++|+|+||||||||+++|++.. .|++| ++. +++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L------------~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL------------MEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH------------HTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh------------cccCCceEEEECCcHH
Confidence 68899999999999999999999955 67776 664 776554
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00035 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+|+..+.. ...+..++.... ..++|+++|+||+|+.+... .+.........+++++.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 163 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMAS-FHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFE 163 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred hhhHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEE
Confidence 334456789999999999976421 122333332222 35789999999999964311 12222333456778899
Q ss_pred EecCCc---cchHHHHhhc
Q 023887 142 CSVESK---LGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~---~~l~~l~~~l 157 (276)
+|+.++ .+++.+...+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHH
T ss_pred EeCCcCCcccCHHHHHHHH
Confidence 999888 6777666554
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00049 Score=56.40 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=55.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 141 (276)
+....++|.+++|+|+..+. +...+.+++.... ..++|+++|.||+|+.+....+.+...+ ...+++++.
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRK-RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHhCCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 34578999999999997653 2333444443321 2578999999999997643222222222 122456788
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 157 ~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWV 172 (181)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHH
Confidence 9999998888877654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=61.82 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=55.7
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHH----HHHHHHhhh---cCceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVL----NTWKSRLHT---WGYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~~~----~~~~~~~~~---~~~~~~~~s~ 144 (276)
.++.+|.+++|+|+..+.......+. +..++..+. |+++++||+|+.+.+.. +++...+.. .+++++.+|+
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTREH-LMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHHH-HHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred hhhhCCEEEEEEECCCCCCChhHHHH-HHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeC
Confidence 46788999999999865334433333 333444454 67888999999886532 233333333 2467899999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++.|...+
T Consensus 182 ~~g~gi~~L~~~l 194 (410)
T 1kk1_A 182 LHGANIDVLVKAI 194 (410)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9988888776653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.29 E-value=6.5e-05 Score=68.06 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=31.6
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++++++++|++|+||||+++.|++.. .+..+++.+.+.++
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~------------~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFY------------KKKGFKVGLVGADV 136 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHH------------HHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEecCC
Confidence 357899999999999999999999743 55566666555443
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=67.06 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+++|||||+|+|.|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999964
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0016 Score=55.40 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=55.5
Q ss_pred hhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhc--CCCEEEEEeCCCCCCHHH-----HHHHHHHhhhcC--ceeEEE
Q 023887 73 PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAEST--GIPLTLALNKVELVDEEV-----LNTWKSRLHTWG--YEPLFC 142 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~--~~~~~ivlnK~Dl~~~~~-----~~~~~~~~~~~~--~~~~~~ 142 (276)
....+|.+++|+|+..+. +.......++...... ++|+++|+||+|+.+... .+.........+ .+++.+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 456789999999997663 3323333444444443 889999999999976421 112222333445 678999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 185 SA~~g~gi~~l~~~l 199 (228)
T 2qu8_A 185 STLTGVGVEQAKITA 199 (228)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred ecccCCCHHHHHHHH
Confidence 999998888876654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0001 Score=66.73 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-ceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~ 208 (276)
+|++++|+|+||+||||+++.|++.. .+.+| ++.+-+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l------------~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS------------MLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH------------HHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH------------HHhcCCEEEEEecC
Confidence 58899999999999999999999843 66667 55544433
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=61.11 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++|+|.+|||||||+|.+.+..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998743
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00052 Score=68.02 Aligned_cols=107 Identities=22% Similarity=0.339 Sum_probs=72.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH---HHHHHHHHhhhcCc---eeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGY---EPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~---~~~~~~~~~~~~~~---~~~~~s~~ 145 (276)
..++.+|.+++|+|+..+. ....... +..+...++|+++|+||+|+.+.. ..+++.. .+++ +++.+|+.
T Consensus 90 ~~l~~aD~aILVVDa~~gv-~~qt~~~-~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~vSAk 164 (599)
T 3cb4_D 90 RSLAACEGALLVVDAGQGV-EAQTLAN-CYTAMEMDLEVVPVLNKIDLPAADPERVAEEIED---IVGIDATDAVRCSAK 164 (599)
T ss_dssp HHHHHCSEEEEEEETTTCC-CTHHHHH-HHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHH---HTCCCCTTCEEECTT
T ss_pred HHHHHCCEEEEEEECCCCC-CHHHHHH-HHHHHHCCCCEEEeeeccCcccccHHHHHHHHHH---HhCCCcceEEEeecc
Confidence 4678999999999997542 2222222 333456799999999999997532 2233332 2354 48999999
Q ss_pred CccchHHHHhhc----c---C-----CEEEEEec---CCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R---D-----QTTVIVGP---SGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~---g-----~~v~lvG~---sGvGKSTLiN~L~g~~ 183 (276)
++.+++.|...+ + + ....+... +++|+.++++.+.|..
T Consensus 165 tg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 165 TGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp TCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred cCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 999988876653 1 1 12333333 8999999999999976
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00062 Score=63.88 Aligned_cols=84 Identities=23% Similarity=0.314 Sum_probs=50.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHH----HHHHHHHHhhh---cCceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEE----VLNTWKSRLHT---WGYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~----~~~~~~~~~~~---~~~~~~~~s~ 144 (276)
.++++|.+++|+|+..+.......+. +..++..+. |+++++||+|+.+.+ ..+++...+.. .+++++.+|+
T Consensus 101 ~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPCPQPQTKEH-LMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp TCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC--
T ss_pred hHhhCCEEEEEEECCCCCCCchhHHH-HHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeC
Confidence 46789999999999876434443333 334454554 688999999997643 23333444433 2467889999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++.|...+
T Consensus 180 ~~g~gi~~L~~~l 192 (408)
T 1s0u_A 180 HHEANIDVLLKAI 192 (408)
T ss_dssp ----CHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888888776653
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00053 Score=62.62 Aligned_cols=86 Identities=15% Similarity=0.043 Sum_probs=56.7
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (276)
+..+.++|.+++|+|+..+.. ...+..++.... ..++|+++|.||+|+.+....+.+...+. ..++.++.
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRER-VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSS-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEE
T ss_pred HHHhccCCEEEEEEECCchHH-HHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEE
Confidence 345789999999999976533 333333333222 23789999999999976533333333332 12456888
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 306 vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 306 TCATSGDGLYEGLDWL 321 (329)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EECCCCcCHHHHHHHH
Confidence 9999999988877654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0001 Score=67.20 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=33.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++++++++|+||+||||++..|++. +.+..|++.+.+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~------------l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM------------FVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEEEECT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH------------HHhcCCEEEEEcccc
Confidence 5789999999999999999999984 477778887766544
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=67.81 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++++++.+ +|+.++|+|+||+|||||+++|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 466666666 7899999999999999999999973
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=5.5e-05 Score=63.17 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|.+|||||||+|.+.+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4457999999999999999999864
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00088 Score=55.18 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=55.7
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCH----HHHHHHHHHhhhcC-ceeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE----EVLNTWKSRLHTWG-YEPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~----~~~~~~~~~~~~~~-~~~~~~s 143 (276)
...++|.+++|+|+..+. +...+..++..... .+.|+++|.||+|+.+. ...+........++ ...+.+|
T Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEI-SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred eecCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 567899999999997653 23344455544443 46799999999999421 01112223344555 6789999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 161 a~~~~gv~~lf~~l 174 (184)
T 3ihw_A 161 ATYGLNVERVFQDV 174 (184)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988876653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00016 Score=66.82 Aligned_cols=62 Identities=29% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEe----------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP---------- 230 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~---------- 230 (276)
+++|+|++|||||||+|.|....... |.++.-+...++ .+...+.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~-------------------g~kV~vi~~Dp~----~~~~~g~~l~d~~~~~~~~ 137 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIER-------------------GHRVAVLAVDPS----STRTGGSILGDKTRMARLA 137 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-------------------TCCEEEEEEC--------------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-------------------CCceEEEecCCC----CCcccchhccchhhHHhhc
Q ss_pred --------------------------------cCCCcEEEecCCCCC
Q 023887 231 --------------------------------LSGGGYLADTPGFNQ 245 (276)
Q Consensus 231 --------------------------------~~~~~~iiDtPg~~~ 245 (276)
......|+||||++.
T Consensus 138 ~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~ 184 (355)
T 3p32_A 138 VHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ 184 (355)
T ss_dssp TCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS
T ss_pred cCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=60.50 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||+|||||.+.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999864
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00029 Score=66.09 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|++|+|||||+|.|.|..
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999853
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=8.1e-05 Score=64.74 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=33.4
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..++++++.+ +| ++|+|+||+|||||+++|.+.. ..|.+.+++.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~--------------~~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--------------RVPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT--------------TCCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh--------------CCCEEEeeHHHH
Confidence 3455555555 34 9999999999999999999854 256677666554
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00041 Score=63.32 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC
T ss_pred ceEEEECCCCccHHHHHHHHhCCC
Confidence 479999999999999999998743
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=60.96 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=28.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceee
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (276)
+.+++|+|+|||||||+.+.|.+... +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987431 22566676654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0035 Score=56.40 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=57.6
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHH-HHHHhcCCCEEEEEeCCCCCC-HHHHHHHHHHhh-hcCc-eeEEEecCC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL-VEAESTGIPLTLALNKVELVD-EEVLNTWKSRLH-TWGY-EPLFCSVES 146 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l-~~a~~~~~~~~ivlnK~Dl~~-~~~~~~~~~~~~-~~~~-~~~~~s~~~ 146 (276)
+..+..+|.+++|+++.. ++.. ++.+ ..+...++|.++++||+|+.. .+........+. .+++ .++.+|+.+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~--~~~~--~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR--WTPD--DEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp TSCCCCEEEEEEEEETTC--CCHH--HHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHHhcCCEEEEEEeCCC--CCHH--HHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 456789999999999864 5533 2232 233456899999999999987 444444444443 3566 678889888
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++.+...+
T Consensus 159 g~~v~~l~~~i 169 (301)
T 1ega_A 159 GLNVDTIAAIV 169 (301)
T ss_dssp TTTHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888877664
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0005 Score=61.34 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=56.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NTWKS 130 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~~~~ 130 (276)
.+.+..+.++|.+++|+|+..+.. ...+. .++..... .++|+++|.||+|+.+.... +....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPAS-FHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 344456789999999999976532 22222 23323232 38899999999999653211 11222
Q ss_pred HhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 131 RLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....++ +++.+|+.++.+++++...+
T Consensus 297 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 297 MAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 3344566 78889998888888776553
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00048 Score=65.53 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++|++|+|||||+|.|++.
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00021 Score=69.81 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHc------------------CCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 161 TTVIVGPSGVGKSSLINALR------------------SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~------------------g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
.++|+|++|||||||+|.|+ +.. -.+........| .
T Consensus 15 ~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~----------------------~~d~~~~e~~~G----i 68 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHA----------------------TSDWMELEKQRG----I 68 (528)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CC----------------------HHHHHHHHHHHC----C
T ss_pred EEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccce----------------------ecccchhhhcCC----e
Q ss_pred eeeEEEEecCCCc---EEEecCCCCCCC
Q 023887 223 TRHVSLLPLSGGG---YLADTPGFNQPS 247 (276)
Q Consensus 223 t~~~~~~~~~~~~---~iiDtPg~~~~~ 247 (276)
|..........+. .|+||||...+.
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~ 96 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFT 96 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCC
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHH
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00012 Score=64.87 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=33.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..++++++.+ +| ++|+|+||+|||||+++|.+.. ..|.+.+++.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~--------------~~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--------------RVPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT--------------TCCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc--------------CCCEEEecHHHH
Confidence 3455555555 34 8999999999999999999854 256777766554
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=65.63 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|++|+|||||+|+|.+..
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc
Confidence 3579999999999999999999853
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00097 Score=64.74 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred CCEEEEEecCCCChhHHHHHHc
Q 023887 159 DQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
..+++|+|++||||||+++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999999
|
| >1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=53.23 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=50.0
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..++|.++|+|++ ...+..||+|.+++.+++..+|-|...+.+
T Consensus 34 ~g~V~e~lgn~~f~V~l~-nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 34 YAQVIKMLGNGRLEAMCF-DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEEECSSSEEEEEET-TTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEEcCCCEEEEEeC-CCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 467888855555 66544 799999999999997 889999999999988776677888877654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=69.56 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-------------------------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK------------------------- 215 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~------------------------- 215 (276)
.++++|++|+|||||+|.|++.. ..+...
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~~--------------------------~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~ 222 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYDL--------------------------NIVNQSQLRKLQRESETMGKSSFKFAWIMDQ 222 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSCS--------------------------SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhc--------------------------CCccHHHHHHHHhhhhhccccccceeeeecc
Q ss_pred ------cCCCCceeeeEEEEecCCCc---EEEecCCC
Q 023887 216 ------SGRGKHTTRHVSLLPLSGGG---YLADTPGF 243 (276)
Q Consensus 216 ------~g~gk~tt~~~~~~~~~~~~---~iiDtPg~ 243 (276)
.| +|.......+.... .++||||.
T Consensus 223 ~~~e~~~G----iTid~~~~~~~~~~~~~~iiDTPG~ 255 (611)
T 3izq_1 223 TNEERERG----VTVSICTSHFSTHRANFTIVDAPGH 255 (611)
T ss_dssp HHHHHHTT----TCCSCSCCEEECSSCEEEEEECCSS
T ss_pred chhhhhCC----eeEeeeeEEEecCCceEEEEECCCC
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00018 Score=70.45 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++++|++|+|||||+|.|.+.
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~ 27 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKT 27 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
|
| >1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=52.79 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=49.4
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeeccc-CCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..+.|.++|+|++ +..+..||+|.+++.+++ ..+|-|...+.+
T Consensus 23 ~g~V~~~lgn~~~~V~l~-nG~~~la~i~GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 23 LGIIEQMLGASRVRVRCL-DGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp EEEEECSSCSSEEEEEEE-TTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred EEEEEEEcCCCEEEEEEC-CCCEEEEEEccccee-eEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 467888855555 66444 799999999999997 888999999999998776 567888877654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0017 Score=58.68 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=55.3
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHH-HHHHhc--CCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCc-eeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL-VEAEST--GIPLTLALNKVELVDEEV-LNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l-~~a~~~--~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
+..+.++|.+++|+|+..+ ++.. ++++ ...+.. ++|.++|+||+|+.+... .......+ .++ +++.+|+.
T Consensus 81 ~~~l~~ad~il~VvD~~~~-~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~ 155 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHP-PTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSAL 155 (301)
T ss_dssp HHHTSSCSEEEEEEETTSC-CCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCC-CChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCC
Confidence 3467899999999999765 3322 3333 233444 899999999999986544 33333333 333 67888988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++.+...+
T Consensus 156 ~g~gv~~l~~~l 167 (301)
T 1wf3_A 156 DERQVAELKADL 167 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888888777665
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0027 Score=52.52 Aligned_cols=85 Identities=9% Similarity=0.113 Sum_probs=55.6
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHH--HhcCCCEEEEEeCCCCCCHHHH----HHH----HHHh-h----h
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEA--ESTGIPLTLALNKVELVDEEVL----NTW----KSRL-H----T 134 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a--~~~~~~~~ivlnK~Dl~~~~~~----~~~----~~~~-~----~ 134 (276)
+....++|.+++|+|+..+... ...+.+++... ...+.|+++|.||+||.+++.. ..+ ...+ . .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 4567899999999999765211 22444555444 2457899999999999874321 111 1112 2 3
Q ss_pred cCceeEEEecCCccchHHHHhh
Q 023887 135 WGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
.+...+.+|+.+ .+++++-..
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHH
Confidence 566788999998 888876654
|
| >2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=50.37 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeeccc-CCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..+.|.++|+|++ ...+..||+|.+++.+.+ ...|.|...+..
T Consensus 18 ~g~V~~~lgn~~f~V~l~-nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~ 81 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETA-QGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCK 81 (111)
T ss_dssp EEEEEECCSSSEEEEECT-TSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCH
T ss_pred EEEEEEeCCCCEEEEEeC-CCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCH
Confidence 467888855555 66444 889999999999996 888999999999987655 456777776554
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00051 Score=64.48 Aligned_cols=25 Identities=32% Similarity=0.330 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++++|+.++|||||+|.|.|..
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999753
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00043 Score=68.35 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=33.9
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++...++.++..+ .|..++|+|+||+|||||+++|.+..
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34555677788776 78999999999999999999999965
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00037 Score=58.45 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00074 Score=55.20 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHH--hcCCCEEEEEeCCCCCCHHH--------------HHHHHHH
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEEV--------------LNTWKSR 131 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~--------------~~~~~~~ 131 (276)
+.+....++|.+++|+|+..+. +...+ ..++.... ..+.|+++|.||+|+.++.. .+.....
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 3344678999999999997653 22223 33333332 24789999999999964210 1112223
Q ss_pred hhhcC-ceeEEEecC-CccchHHHHhh
Q 023887 132 LHTWG-YEPLFCSVE-SKLGLDSLLQR 156 (276)
Q Consensus 132 ~~~~~-~~~~~~s~~-~~~~l~~l~~~ 156 (276)
...++ ...+.+|+. ++.+++++...
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 33455 578889987 57778776654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00037 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|++||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999873
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=61.02 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=53.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC--HHHH----HHHHHHhhhcC-----ceeE
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD--EEVL----NTWKSRLHTWG-----YEPL 140 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~--~~~~----~~~~~~~~~~~-----~~~~ 140 (276)
.++++|.+++|+|+..+. .. ...+++..+...+.+ +++|+||+|+.+ ++.. +++...+..++ ++++
T Consensus 124 ~~~~aD~~ilVvDa~~g~-~~-qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i 201 (434)
T 1zun_B 124 GASTCDLAIILVDARYGV-QT-QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV 201 (434)
T ss_dssp HHTTCSEEEEEEETTTCS-CH-HHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred HHhhCCEEEEEEECCCCC-cH-HHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEE
Confidence 578999999999997653 22 334445555666775 788999999986 3322 23344455667 5678
Q ss_pred EEecCCccchHH
Q 023887 141 FCSVESKLGLDS 152 (276)
Q Consensus 141 ~~s~~~~~~l~~ 152 (276)
.+|+.++.++++
T Consensus 202 ~vSA~~g~gi~~ 213 (434)
T 1zun_B 202 PMSALKGDNVVN 213 (434)
T ss_dssp ECCTTTCTTTSS
T ss_pred EEeccCCCCccc
Confidence 889887776654
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00034 Score=66.50 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=58.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchH
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 151 (276)
..+.++|.+++|+|+ .+ . ....+++..+...++|+++|+||+|+.+....+........++++++.+|+.++.+++
T Consensus 109 ~~l~~aD~vllVvD~-~~--~-~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 109 RVFYRADCGILVTDS-AP--T-PYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp HHHTSCSEEEEECSS-SC--C-HHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred HHHhcCCEEEEEEeC-CC--h-HHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 367889999999998 22 2 2445566666777999999999999976543322223334567788999999888877
Q ss_pred HHHhhc
Q 023887 152 SLLQRL 157 (276)
Q Consensus 152 ~l~~~l 157 (276)
++...+
T Consensus 185 eL~~~L 190 (423)
T 3qq5_A 185 DIGKTI 190 (423)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 766553
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00036 Score=58.34 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0019 Score=55.44 Aligned_cols=92 Identities=11% Similarity=0.221 Sum_probs=60.2
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCcee
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEP 139 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~ 139 (276)
|-..+.+....++|.+++|+|+..+. +...+.+++... ...+.|++||.||+||.+.. ..++......+++...
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~-Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVN-SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhHHHHHhccccEEEEEeecchhH-HHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCee
Confidence 33334444678999999999997652 222344443333 34577899999999996531 1122233445667888
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++-..+
T Consensus 153 ~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 153 IETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEBTTTTBSHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHH
Confidence 899999999988876654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00016 Score=61.34 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc--ceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~ 208 (276)
+|..++|+|++|+||||+.+.|.+.. .|..| .+.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l------------~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL------------VRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH------------HHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh------------ccccCCcEEEECChH
Confidence 68899999999999999999998743 45556 55665443
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00062 Score=63.42 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc---EE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~---~i 237 (276)
.++++|++++|||||+|.|.... .|..+.+....... .+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g--------------------------------------iTi~~~~~~~~~~~~~i~i 64 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG--------------------------------------TSSDITMYNNDKEGRNMVF 64 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE--------------------------------------EESSSEEEEECSSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--------------------------------------EEEEeeEEEEecCCeEEEE
Q ss_pred EecCCCCCC
Q 023887 238 ADTPGFNQP 246 (276)
Q Consensus 238 iDtPg~~~~ 246 (276)
+||||...+
T Consensus 65 iDtPGh~~f 73 (370)
T 2elf_A 65 VDAHSYPKT 73 (370)
T ss_dssp EECTTTTTC
T ss_pred EECCChHHH
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00037 Score=66.96 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-.++++|.+|+|||||+|.|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999864
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0031 Score=59.87 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=54.4
Q ss_pred hhccccEEEEEEEcCCCCCC-----HHHHHHHHHHHHhcCCC-EEEEEeCCCCCCH----HHH----HHHHHHhhhcCc-
Q 023887 73 PVANVDHLLLLFSMDQPKLE-----PFALTRFLVEAESTGIP-LTLALNKVELVDE----EVL----NTWKSRLHTWGY- 137 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~-----~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~~----~~~----~~~~~~~~~~~~- 137 (276)
.++++|.+++|+|+..+.+. ..+..+.+..+...++| +++++||+|+.+. +.. +++...+.++++
T Consensus 115 ~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~ 194 (439)
T 3j2k_7 115 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194 (439)
T ss_pred hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccc
Confidence 47889999999999765331 01333445556677888 8899999999642 112 222333445554
Q ss_pred -----eeEEEecCCccchHHHHh
Q 023887 138 -----EPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 138 -----~~~~~s~~~~~~l~~l~~ 155 (276)
+++.+|+.++.++.++..
T Consensus 195 ~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 195 PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccCCeeEEEeeccCCcccccccc
Confidence 478899988888776443
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0013 Score=63.05 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=50.8
Q ss_pred chhccccEEEEEEEcCCCCCC-----HHHHHHHHHHHHhcCC-CEEEEEeCCCCCC--HHHHHH----HHHHhhhcCc--
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-----PFALTRFLVEAESTGI-PLTLALNKVELVD--EEVLNT----WKSRLHTWGY-- 137 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-----~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~--~~~~~~----~~~~~~~~~~-- 137 (276)
..++++|.+++|+|+..+.+. .....+.+..+...+. ++++|+||+|+.+ ++..+. +...+..+++
T Consensus 130 ~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~ 209 (483)
T 3p26_A 130 MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFE 209 (483)
T ss_dssp HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCc
Confidence 357899999999999765332 1234445555666675 5888999999986 332222 2233334443
Q ss_pred ---eeEEEecCCccchHH
Q 023887 138 ---EPLFCSVESKLGLDS 152 (276)
Q Consensus 138 ---~~~~~s~~~~~~l~~ 152 (276)
+++.+|+.++.++++
T Consensus 210 ~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 210 DNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGEEEEECCSSSCTTSSS
T ss_pred ccceEEEEeeecCCCccc
Confidence 568888887776653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=54.53 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=53.8
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHHHHH----HHHHHh-hhcCce----eE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEVLN----TWKSRL-HTWGYE----PL 140 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~-~~~~~~----~~ 140 (276)
....++|.+++|+|+..+..+...+..++.... ..+.|+++|.||+|+.+..... .....+ ..+++. .+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 356789999999999765222334555554433 2478889999999998754332 111222 334654 67
Q ss_pred EEecCCcc-chHHHHhh
Q 023887 141 FCSVESKL-GLDSLLQR 156 (276)
Q Consensus 141 ~~s~~~~~-~l~~l~~~ 156 (276)
.+|+.++. +++.|...
T Consensus 155 ~~Sa~~~~~~~~~l~~~ 171 (184)
T 2zej_A 155 FVNATEESDALAKLRKT 171 (184)
T ss_dssp ECCTTSCCHHHHHHHHH
T ss_pred EEecccCchhHHHHHHH
Confidence 88888774 77766554
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00053 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++|+|.+|||||||++.+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 3799999999999999999875
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00047 Score=58.34 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-++|+||||||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999753
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00043 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++|+|+||+|||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00099 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..-.++++|.+|||||||+|.+.+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC
Confidence 3467999999999999999999863
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00077 Score=54.28 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH-HHHHHHhhhcCceeEEEecCCccchHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
+++|.+++|+|+..+ .....++......++|+++|.||+|+.+.... .........++.+++.+|+.++.+++++
T Consensus 80 ~~~~~~i~v~D~~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATAL----ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCH----HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCch----hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 489999999998642 23333444445568999999999998532110 0011222345678899999999998887
Q ss_pred Hhhc
Q 023887 154 LQRL 157 (276)
Q Consensus 154 ~~~l 157 (276)
...+
T Consensus 156 ~~~l 159 (165)
T 2wji_A 156 KKAI 159 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+..+.|+|+|||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998743
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0024 Score=54.49 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=53.5
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
..+++|.+++|+++..+. +...+..+..... ..++|+++|.||+||.+... .+........++++.+.+|+.+
T Consensus 108 ~~~~a~~~ilVydvt~~~-sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRA-SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHH-HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 456789999999997542 2223433333222 24789999999999964211 1111122234567888999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++-..+
T Consensus 187 g~~v~elf~~l 197 (211)
T 2g3y_A 187 QHNVKELFEGI 197 (211)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99988876654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=55.87 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|.|++||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999875
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0023 Score=59.01 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred hccccEEEEEEEcCCCC--CCHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEecC
Q 023887 74 VANVDHLLLLFSMDQPK--LEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~--~~~~~l~r~l~~a~~-----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+.++|.+++|+|+..+. .....++.++..... .++|.++|+||+|+.+..+ .+.+...+.. .++++.+|+.
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~ 312 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAV 312 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECC
Confidence 56799999999996521 122234444333333 4789999999999987542 2223222221 1567888988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.++++|...+
T Consensus 313 tg~gi~eL~~~l 324 (342)
T 1lnz_A 313 TREGLRELLFEV 324 (342)
T ss_dssp CSSTTHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 888888877654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00064 Score=63.62 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCC-------------CCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSS-------------PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~-------------~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++|++|+|||||+|.|.+. . .+........| .|....
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~-----------------------~d~~~~e~~~g----iTi~~~ 57 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE-----------------------IDNAPEERARG----ITINAA 57 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHH-----------------------HHSCCEEEETT----EEEECE
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhh-----------------------hhcCHHHHhcC----cEEEee
Q ss_pred EEecCCCc---EEEecCC
Q 023887 228 LLPLSGGG---YLADTPG 242 (276)
Q Consensus 228 ~~~~~~~~---~iiDtPg 242 (276)
.+...... .++||||
T Consensus 58 ~~~~~~~~~~~~iiDtpG 75 (397)
T 1d2e_A 58 HVEYSTAARHYAHTDCPG 75 (397)
T ss_dssp EEEEECSSCEEEEEECSS
T ss_pred eEEeccCCeEEEEEECCC
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00057 Score=66.66 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC---------------CCceeee
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR---------------GKHTTRH 225 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~---------------gk~tt~~ 225 (276)
.++++|++|+|||||+|.|++.. ..+.....-.+. .+..|..
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~-----------------------g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~ 71 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFG-----------------------QAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC-----------------------C-------------------------------CC
T ss_pred EEEEECCCCChHHHHHHHHHhhc-----------------------CCccccceeecCccccceeeccchhcccCCccee
Q ss_pred EEEEecCCCc---EEEecCCCCCCC
Q 023887 226 VSLLPLSGGG---YLADTPGFNQPS 247 (276)
Q Consensus 226 ~~~~~~~~~~---~iiDtPg~~~~~ 247 (276)
........+. .|+||||...+.
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~ 96 (529)
T 2h5e_A 72 TSVMQFPYHDCLVNLLDTPGHEDFS 96 (529)
T ss_dssp TTEEEEEETTEEEEEECCCCSTTCC
T ss_pred eeEEEEEECCeEEEEEECCCChhHH
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00051 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|+|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999973
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=55.68 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=53.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHH--------------HHHHHHH
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEV--------------LNTWKSR 131 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~--------------~~~~~~~ 131 (276)
+.+..+.++|.+++|+|+..+. +...+ ..++...+. .+.|+++|.||+|+.++.. .+.....
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 3344678999999999997652 22223 333333332 4789999999999964210 1112223
Q ss_pred hhhcC-ceeEEEecC-CccchHHHHhh
Q 023887 132 LHTWG-YEPLFCSVE-SKLGLDSLLQR 156 (276)
Q Consensus 132 ~~~~~-~~~~~~s~~-~~~~l~~l~~~ 156 (276)
...++ ...+.+|+. ++.+++++...
T Consensus 171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 171 AKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 33455 478888987 56777776654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00037 Score=68.06 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=36.2
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.+..++..++|..++|+|+||+|||||+++|.+.. .+..|.+.+.+.
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------------~~~~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------------GRKFVRISLGGV 144 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------------TCEEEEECCCC-
T ss_pred HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCeEEEEeccc
Confidence 34455555689999999999999999999999854 566677766653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0028 Score=59.31 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=50.9
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC-HHHHH----HHHHHhhhcC-----ceeE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD-EEVLN----TWKSRLHTWG-----YEPL 140 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~-~~~~~----~~~~~~~~~~-----~~~~ 140 (276)
..++++|.+++|+|+..+.. . ...+++..+...++| +++++||+|+.+ ++..+ ++...+..++ .+++
T Consensus 94 ~~~~~aD~~ilVvda~~g~~-~-qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 171 (405)
T 2c78_A 94 TGAAQMDGAILVVSAADGPM-P-QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 171 (405)
T ss_dssp HHHTTCSSEEEEEETTTCCC-H-HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHHHCCEEEEEEECCCCCc-H-HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEE
Confidence 35789999999999976532 2 344556666777898 789999999984 33222 2333445555 4578
Q ss_pred EEecCCccc
Q 023887 141 FCSVESKLG 149 (276)
Q Consensus 141 ~~s~~~~~~ 149 (276)
.+|+.++.+
T Consensus 172 ~~SA~~g~~ 180 (405)
T 2c78_A 172 RGSALLALE 180 (405)
T ss_dssp ECCHHHHHH
T ss_pred EccHHHhhh
Confidence 888766544
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00071 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.....+|+|+||+|||||+.+|.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34588999999999999999976
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00076 Score=53.94 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEecCCCChhHHHHHH
Q 023887 160 QTTVIVGPSGVGKSSLINAL 179 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L 179 (276)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00065 Score=56.87 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++|+|+|||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00054 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
...++++|++|+|||||+|.|.+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Confidence 45799999999999999999987
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00056 Score=61.63 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||||||||.+.|.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988754
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0008 Score=64.78 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++++|++|+|||||+|.|.+..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC
Confidence 4579999999999999999999843
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00075 Score=67.87 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..++|+|++|+|||||+|.|++
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0007 Score=59.65 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=55.5
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH-HHHHHhhhcCceeEEEecCCccchHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN-TWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
.++|.+++|+|+..+. ....+.......++|+++|+||+|+.+..... ........++++++.+|+.++.+++++
T Consensus 82 ~~~d~vi~VvDas~~~----~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 82 LEYDCIINVIDACHLE----RHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCCSEEEEEEEGGGHH----HHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEeeCCCch----hHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 7899999999987532 22222333346689999999999986542111 111222446889999999999999998
Q ss_pred Hhhcc
Q 023887 154 LQRLR 158 (276)
Q Consensus 154 ~~~l~ 158 (276)
...+.
T Consensus 158 ~~~i~ 162 (256)
T 3iby_A 158 QQSLL 162 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 276 | ||||
| d1u0la2 | 225 | c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C | 3e-41 | |
| d1t9ha2 | 231 | c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C | 3e-36 | |
| d1t9ha1 | 67 | b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-t | 2e-07 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 4e-05 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 2e-04 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-04 | |
| d1u0la1 | 66 | b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-t | 2e-04 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 2e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 2e-04 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 3e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-04 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 4e-04 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 6e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 7e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 0.001 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.001 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 0.002 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 0.002 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 0.002 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 0.002 | |
| d1e69a_ | 308 | c.37.1.12 (A:) Smc head domain {Thermotoga maritim | 0.002 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 0.003 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.004 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.004 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 0.004 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 0.004 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.004 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 139 bits (352), Expect = 3e-41
Identities = 59/200 (29%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT 127
+ P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L
Sbjct: 2 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK 61
Query: 128 WKSRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHA 185
+ + Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+
Sbjct: 62 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINP---- 117
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
RV EVS K RG+HTT LL GGY+ DTPGF
Sbjct: 118 ------------------GLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159
Query: 246 PSLLKVTKQSLAQTFPEVCA 265
+ + + L F E
Sbjct: 160 LEINDIEPEELKHYFKEFGD 179
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 127 bits (319), Expect = 3e-36
Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 27/202 (13%)
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---- 123
E++ PP+ NVD +L+FS QP L RFLV E+ I + + K++L++++
Sbjct: 2 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTED 61
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ + GY+ S + + L ++ +D+TTV G SGVGKSSL+NA+
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISP-- 119
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
R E+S GRGKHTTRHV L+ S GG +ADTPGF
Sbjct: 120 --------------------ELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGF 158
Query: 244 NQPSLLKVTKQSLAQTFPEVCA 265
+ + ++ L TFP++
Sbjct: 159 SSLEFTDIEEEELGYTFPDIRE 180
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 67 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 45.1 bits (107), Expect = 2e-07
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66
++ + + C R + +K K LVGD VV + + D+ G + + +R+
Sbjct: 20 SEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERT 67
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 4e-05
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
VI G GKSSL+NAL A + + + +
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 51
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V++G GVG+ + N L +
Sbjct: 7 VLLGAHGVGRRHIKNTLITK 26
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 149 GLDSLLQRLRDQTT-----VIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
GL S+L++L+ +++G GK++L+ L S + +
Sbjct: 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK 53
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (90), Expect = 2e-04
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222
IVG VGKS+L NA+ + A + +P+ + + ++ V T R K
Sbjct: 12 AIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 71
Query: 223 TRH 225
Sbjct: 72 VEP 74
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 66 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.7 bits (85), Expect = 2e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65
++TG +LC +R + ++ VGD+V + G+IENV R
Sbjct: 20 EETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHR 65
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
V+ GPSG GKS+L+ L
Sbjct: 4 VLSGPSGAGKSTLLKKLFQE 23
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
++ PSG GKSSLI AL +
Sbjct: 6 IVSAPSGAGKSSLIQALLKT 25
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 163 VIVGPSGVGKSSLINALRS 181
V+ GPS VGKS+++ LR
Sbjct: 6 VLSGPSAVGKSTVVRCLRE 24
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
VIVG VGKS+L+N L + A + I V T
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT 55
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
VI GPSG GKS+L+ L +
Sbjct: 5 VISGPSGTGKSTLLKKLFAE 24
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 38.6 bits (89), Expect = 4e-04
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 150 LDSLLQRLRDQ-----TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
L LL L+ + T +++G GVGKSS +N++ S + P++ S+
Sbjct: 18 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR 77
Query: 205 EDQRV 209
+
Sbjct: 78 AGFTL 82
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.8 bits (86), Expect = 6e-04
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 161 TTVIVGPSGVGKSSLINALRSS 182
T + G S VGKS+LI L
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGK 23
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.4 bits (85), Expect = 7e-04
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 161 TTVIVGPSGVGKSSLINALRSSPHA 185
T +IVG VGKS+L N L A
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKA 26
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (84), Expect = 0.001
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADV-DNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221
+ +G GK++L++ L++ A+ E +G+ F +G K
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD 63
Query: 222 TTRHV 226
V
Sbjct: 64 YFPEV 68
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 36.5 bits (83), Expect = 0.001
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+VG VGKS+L++ + S+ A P LG +D R
Sbjct: 6 LVGFPSVGKSTLLSVVSSA-KPKIADYHFTTLVPNLGMVETDDGR 49
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.1 bits (85), Expect = 0.002
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 150 LDSLLQRLRDQTT--VIVGPSGVGKSSLINALRSSPHASDAA 189
+ L+ + + G +G GKSS IN LR + + A
Sbjct: 45 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGA 86
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 36.3 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
IVG VGKS+L+N L A +
Sbjct: 9 AIVGKPNVGKSTLLNNLLG----VKVAPISPRP 37
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 36.3 bits (84), Expect = 0.002
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T VG SG GKS+LIN + +++ G + + + T S R
Sbjct: 45 ETVAFVGMSGGGKSTLINLI------------PRFYDVTSGQILIDGHNIKDFLTGSLRN 92
Query: 220 K 220
+
Sbjct: 93 Q 93
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.002
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 163 VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
++VG GK++++ L+ + + E +
Sbjct: 4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV 39
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 35.9 bits (81), Expect = 0.002
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 163 VIVGPSGVGKSSLINALRSS 182
IVG VGKS+L+N L
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ 28
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 157 LRDQTTVIVGPSGVGKSSLINALR 180
D+ T IVGP+G GKS++I+A++
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAIK 45
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 35.5 bits (80), Expect = 0.003
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 163 VIVGPSGVGKSSLINALR 180
+I+G G GK++++ L+
Sbjct: 9 LILGLDGAGKTTILYRLQ 26
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 35.9 bits (81), Expect = 0.004
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINAL 179
L+ LR T+++G GKSS+I
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIG 49
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.2 bits (82), Expect = 0.004
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 162 TVIVGPSGVGKSSLINALR 180
T I+GP+G GKS++++A+
Sbjct: 28 TSIIGPNGSGKSNMMDAIS 46
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 35.0 bits (79), Expect = 0.004
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 163 VIVGPSGVGKSSLINALR 180
+++G GK++++
Sbjct: 6 LMLGLDNAGKTTILKKFN 23
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 35.6 bits (82), Expect = 0.004
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 160 QTTVIVGPSGVGKSSLINAL 179
GPSG GKS++ + L
Sbjct: 29 SIIAFAGPSGGGKSTIFSLL 48
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 35.0 bits (79), Expect = 0.004
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+VG GKSSL+ A+ + H A P LG ++
Sbjct: 6 LVGYPNAGKSSLLAAMTRA-HPKIAPYPFTTLSPNLGVVEVSEEE 49
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 276 | |||
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 100.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 100.0 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.87 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.82 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.81 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.8 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.8 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.8 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.79 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.79 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.78 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.78 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.78 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.78 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.78 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.78 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.78 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.76 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.74 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.69 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.69 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.59 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.53 | |
| d1u0la1 | 66 | Probable GTPase EngC (YjeQ), N-terminal domain {Th | 99.44 | |
| d1t9ha1 | 67 | Probable GTPase EngC (YjeQ), N-terminal domain {Ba | 99.44 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.82 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.79 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 98.64 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 98.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 98.61 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.55 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 98.55 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 98.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 98.51 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 98.48 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.4 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 98.21 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 98.15 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 98.05 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 98.04 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.03 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.96 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.87 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.84 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.84 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.8 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.77 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 97.76 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.71 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.71 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.7 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 97.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 97.64 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.64 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 97.64 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 97.62 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 97.56 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.55 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.51 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 97.49 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.48 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.48 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.46 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 97.44 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.44 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 97.43 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.42 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.41 | |
| d1ah9a_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 97.4 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 97.4 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 97.36 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.34 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 97.33 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.32 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 97.31 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.29 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 97.28 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 97.27 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.25 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 97.24 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1hr0w_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 97.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.22 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 97.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.21 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.19 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 97.19 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 97.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.18 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.15 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.11 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.1 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 97.08 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 97.06 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 97.06 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 97.05 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.05 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 97.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.04 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.99 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.98 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.97 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.97 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 96.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.97 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.96 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.96 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.95 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.95 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.93 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.93 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.92 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.91 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.88 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 96.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.86 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.86 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.85 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.82 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 96.81 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.8 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.8 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.79 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.79 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.78 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.76 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.76 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.75 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.73 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.71 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 96.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.67 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.64 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.64 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 96.63 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.62 | |
| d1d7qa_ | 143 | Translation initiation factor-1a, eIF1a {Human (Ho | 96.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.59 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.59 | |
| d1jt8a_ | 102 | Archaeal initiation factor-1a, aIF1a {Archaeon Met | 96.56 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.55 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.54 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.51 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.5 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.5 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 96.49 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.49 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.48 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.47 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 96.46 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 96.46 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.46 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.46 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.46 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.44 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.43 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.41 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.37 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.34 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.33 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 96.32 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.3 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.3 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.3 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.3 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 96.28 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 96.25 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 96.24 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.23 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 96.2 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.19 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.18 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.18 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 96.18 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.14 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 96.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.1 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.08 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.04 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.03 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.01 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.01 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.0 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.0 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.99 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.96 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.95 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.89 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.86 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.85 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.83 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.79 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.79 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.76 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.71 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.7 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.69 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.68 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.66 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.57 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.52 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 95.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.45 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.42 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.38 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.38 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.33 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.22 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.08 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.06 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.05 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.03 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.97 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.91 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.82 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.81 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.81 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.75 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 94.75 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.74 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.62 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 94.54 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.42 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.4 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.33 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.32 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.16 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.15 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.15 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.15 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.07 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.89 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.86 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.69 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.64 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.59 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.44 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.31 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.25 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.17 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 93.04 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.01 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.82 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.82 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 92.78 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.09 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.84 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.82 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.57 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.35 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.32 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.77 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.65 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.94 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.57 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.54 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.13 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.13 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 88.89 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.71 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.36 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.19 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.07 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 88.05 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.02 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 87.41 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.3 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.15 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.85 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.73 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.41 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.63 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.14 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.57 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.5 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.84 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.33 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 81.06 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.72 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 80.71 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 80.61 |
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9e-43 Score=305.09 Aligned_cols=178 Identities=33% Similarity=0.530 Sum_probs=151.8
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHh--hhcCceeEEEec
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL--HTWGYEPLFCSV 144 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~--~~~~~~~~~~s~ 144 (276)
|.+.||.|||+|++++|+++..|.+++.+|||||+.|+.++++++||+||+||.+++..+.+...+ +..+|+++.+|+
T Consensus 1 N~l~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa 80 (225)
T d1u0la2 1 NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSA 80 (225)
T ss_dssp CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCT
T ss_pred CCcCCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecc
Confidence 678999999999999999999999999999999999999999999999999999887766555433 245789999999
Q ss_pred CCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 145 ~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
.++.+++.|...++|++++|+|+||||||||||+|.|.. .++++++|.+.++|||||+
T Consensus 81 ~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~----------------------~~~T~~vs~~~~rGrHTTt 138 (225)
T d1u0la2 81 KTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL----------------------KLRVSEVSEKLQRGRHTTT 138 (225)
T ss_dssp TTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTC----------------------CCC-------------CCC
T ss_pred ccchhHhhHHHHhcCCeEEEECCCCCCHHHHHHhhcchh----------------------hhhccCcccccCCCCcccc
Confidence 999999999999999999999999999999999999976 3789999999999999999
Q ss_pred eEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 225 HVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 225 ~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+..+++++.+++|+|||||++++++..+.+++...|+||.+.
T Consensus 139 ~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F~e~~~~ 180 (225)
T d1u0la2 139 TAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGDK 180 (225)
T ss_dssp SCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSSC
T ss_pred ceeEEEECCCcEEEeCCccccccccccCcchhhhhhhhHHhC
Confidence 999999999999999999999999999999999999999753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.9e-42 Score=304.02 Aligned_cols=177 Identities=37% Similarity=0.654 Sum_probs=146.1
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH----HHHHHHhhhcCceeEEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL----NTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~----~~~~~~~~~~~~~~~~~ 142 (276)
|.|.||+|||+|++++|+++..|.+++.+|||||+.|+.++++++||+||+||.++++. +.+.+.|..+||+++.+
T Consensus 1 N~l~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 80 (231)
T d1t9ha2 1 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 80 (231)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceee
Confidence 67899999999999999999889999999999999999999999999999999876543 34556678899999999
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|+.++.+++.|...++|++++|+|+||||||||||+|.|.. .++++++|.+.++||||
T Consensus 81 Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~----------------------~~~t~~vs~~~~rGrHT 138 (231)
T d1t9ha2 81 SSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPEL----------------------GLRTNEISEHLGRGKHT 138 (231)
T ss_dssp CHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------
T ss_pred ecCChhHHHHHHHhhccceEEEECCCCccHHHHHHhhccHh----------------------HhhhcccccccCCCcee
Confidence 99999999999999999999999999999999999999976 47899999999999999
Q ss_pred eeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 223 TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 223 t~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
|++..++.. .+++|+|||||++++++..++++|...|+||.+.
T Consensus 139 Tt~~~l~~~-~gg~iiDTPG~r~~~l~~~~~~~l~~~F~ei~~~ 181 (231)
T d1t9ha2 139 TRHVELIHT-SGGLVADTPGFSSLEFTDIEEEELGYTFPDIREK 181 (231)
T ss_dssp CCCCCEEEE-TTEEEESSCSCSSCCCTTCCHHHHGGGSHHHHHH
T ss_pred eeeEEEEec-CCCEEEECCccccccccccCcccchhhhhhHHHH
Confidence 999999986 4889999999999999999999999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=3.2e-22 Score=178.43 Aligned_cols=146 Identities=24% Similarity=0.351 Sum_probs=110.4
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
+..+.++|+|++|+|++.|..+ ...+++++ .++|.++|+||+||++.+..+.|.++|++.++..+++++.+..+
T Consensus 10 ~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~ 84 (273)
T d1puja_ 10 TEKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG 84 (273)
T ss_dssp HHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred HHHHHhCCEEEEEEECCCCCCCCCHHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence 3468999999999999999543 45778876 38999999999999999999999999988888888898877655
Q ss_pred hHHHHhhc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 150 LDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 150 l~~l~~~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
...+...+ .+-.++++|.||||||||+|+|.|.. ...
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~-------------------------~~~ 139 (273)
T d1puja_ 85 LNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------------------IAK 139 (273)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------------------CC-
T ss_pred ccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccc-------------------------eEE
Confidence 44332211 24579999999999999999999854 334
Q ss_pred cccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
++..+| +|++.+.+..+.+.+++||||+..|....
T Consensus 140 ~~~~pG----~Tr~~~~i~~~~~~~l~DTPGi~~p~~~~ 174 (273)
T d1puja_ 140 TGDRPG----ITTSQQWVKVGKELELLDTPGILWPKFED 174 (273)
T ss_dssp ---------------CCEEETTTEEEEECCCCCCSCCCC
T ss_pred ECCccc----ccccceEEECCCCeEEecCCCccccCCcc
Confidence 555667 88899999998899999999998887654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5.1e-21 Score=167.20 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=103.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|.|.. +|++|+|+++|+++...+.
T Consensus 3 v~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~------------~p~sG~I~i~g~~i~~~~~- 69 (232)
T d2awna2 3 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTPP- 69 (232)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEESSSCCTTSCG-
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCCEEEECCEECCCCch-
Confidence 457888999988999999998 89999999999999999999999965 9999999999999876653
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|++..
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 70 ------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 143 (232)
T ss_dssp ------GGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHH
T ss_pred ------hhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 23578999998644
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
+++|||+. ++|.....++.+.+.++.+ .| +|++|||++
T Consensus 144 aL~~~P~illlDEPts---~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~ 192 (232)
T d2awna2 144 TLVAEPSVFLLDEPLS---NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192 (232)
T ss_dssp HHHTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHhcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 69999999 9999999999999999965 46 899999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=7.1e-21 Score=166.89 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=102.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|.|.. +|++|+|+++|+++...++
T Consensus 8 ~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~------------~p~sG~I~i~g~~i~~~~~ 75 (239)
T d1v43a3 8 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLPP 75 (239)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCCEEEEcceecccCCc
Confidence 3567889999988999999998 89999999999999999999999965 9999999999999877653
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. .+.+++++|++..
T Consensus 76 ~-------~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 76 K-------DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp G-------GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred c-------cceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 2 3568999987644
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||+. ++|+....++.+.+.++.+. | ++++|||+
T Consensus 149 raL~~~P~iLllDEPts---~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~ 197 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLS---NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 197 (239)
T ss_dssp HHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred hhhccCCCceeecCCcc---cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999 99999999999999999764 6 99999997
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.80 E-value=2.2e-20 Score=163.93 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=106.3
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.++++|++...++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|+++|+++...+.
T Consensus 5 ~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~------------~p~sG~I~~~g~~i~~~~~ 72 (240)
T d1g2912 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPEK 72 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGGG
T ss_pred EEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCCEEEECCEEecccch
Confidence 3567889999888999999998 89999999999999999999999965 9999999999999877653
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
... -+...+.+++++|++..
T Consensus 73 ~~~-~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 73 GIF-VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp TEE-CCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hhh-cccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 221 11234679999998644
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. ++|.....++.+.+.++.++ | +|++|||++
T Consensus 152 raL~~~P~iLllDEPt~---~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLS---NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp HHHHTCCSEEEEECTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHhcCCCEEEecCCCc---ccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 69999999 99999999999999999765 6 999999973
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.80 E-value=1.4e-20 Score=165.21 Aligned_cols=122 Identities=15% Similarity=0.249 Sum_probs=103.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+||||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 8 ev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~------------~p~~G~I~~~G~~i~~~~~ 75 (240)
T d1ji0a_ 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEecccccccccH
Confidence 3567889999888999999998 89999999999999999999999965 9999999999998876543
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..- .+..+.++++....
T Consensus 76 ~~~----~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iA 151 (240)
T d1ji0a_ 76 HVI----NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp HHH----HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHH
T ss_pred HHH----HHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHH
Confidence 221 22346677665432
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||+. ++|+....++.+.+.+++++| ++++|||++
T Consensus 152 raL~~~P~lLllDEPt~---gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~ 200 (240)
T d1ji0a_ 152 RALMSRPKLLMMDEPSL---GLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp HHHTTCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred HHHHhCCCEeeecCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 999999999999999999887 999999863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=1.8e-20 Score=166.28 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=108.1
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|+++|+++...+
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~------------~p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVR 70 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEE
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc------------cCCCCCEEECCEEeccCC
Confidence 34567889999888999999998 89999999999999999999999965 999999999999988765
Q ss_pred cccCCC--------CceeeeEEEEecCCCc--------------------------------------------------
Q 023887 214 TKSGRG--------KHTTRHVSLLPLSGGG-------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~g--------k~tt~~~~~~~~~~~~-------------------------------------------------- 235 (276)
...... +..++.+++++|++..
T Consensus 71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~L 150 (258)
T d1b0ua_ 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150 (258)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccc
Confidence 443211 1234678888887543
Q ss_pred --------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 --------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 --------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||+. ++|.....++.+.+.+++++| ++++|||++
T Consensus 151 SGG~~QRv~iAraL~~~P~llilDEPT~---gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~ 210 (258)
T d1b0ua_ 151 SGGQQQRVSIARALAMEPDVLLFDEPTS---ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 210 (258)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred cHHHHHHHHHHHHHhcCCCEEEeccccc---cCCHHHHHHHHHhhhhhcccCCceEEEeCCHH
Confidence 69999999 999999999999999999887 999999973
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3.2e-20 Score=162.79 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=103.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+..+|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~------------~p~~G~i~i~G~~i~~~~~- 71 (238)
T d1vpla_ 5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEPH- 71 (238)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCHH-
T ss_pred EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECcEecccChH-
Confidence 467889999999999999998 89999999999999999999999965 9999999999998765332
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 72 -----~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 72 -----EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp -----HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHH
T ss_pred -----HHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHH
Confidence 144668888886533
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||+. ++|.....++.+++.++.++| ++++||+++
T Consensus 147 al~~~p~illLDEPt~---gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~ 194 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTS---GLDVLNAREVRKILKQASQEGLTILVSSHNML 194 (238)
T ss_dssp HHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred HHhcCCCEEEecCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 69999999 999999999999999999887 999999973
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=1.6e-20 Score=163.86 Aligned_cols=124 Identities=18% Similarity=0.273 Sum_probs=101.3
Q ss_pred ceeEEEecCCcc----chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~~----~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|..+. .++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|+++|+++..
T Consensus 4 i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~------------~p~sG~I~~~g~~i~~ 71 (230)
T d1l2ta_ 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (230)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC------------CCCcceeEECCEEcCc
Confidence 356677775432 588899888 89999999999999999999999965 9999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+++. +.+...+++++++|++..
T Consensus 72 ~~~~~-~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGq 150 (230)
T d1l2ta_ 72 LDDDE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (230)
T ss_dssp CCHHH-HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CChhh-cchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHH
Confidence 65432 111123568999987643
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. +||.....++.+++.++.+. | +|++|||++
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs---~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~ 207 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTG---ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred HHHHHHHhhhhcCCCEEEecCCcc---ccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH
Confidence 69999999 99999999999999999764 6 899999963
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=4e-20 Score=163.58 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=99.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|+....++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...++.
T Consensus 7 v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~------------~p~~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 7 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCHH
T ss_pred EEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC------------cCCCcEEEECCEeccchhHH
Confidence 467888999888999999998 89999999999999999999999965 99999999999987654432
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.- ....+++++|++.
T Consensus 75 ~~----~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (254)
T d1g6ha_ 75 EL----YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 150 (254)
T ss_dssp HH----HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HH----HHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhh
Confidence 11 1122444443321
Q ss_pred --------------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 --------------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 --------------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+|+|||+. ++|.....++.+.+.+++++| ++++|||++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~---gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~ 211 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIA---GVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 211 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CCcHHHHHHHHHHHHHhCcCchhhcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 079999999 999999999999999999887 899999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.78 E-value=2.2e-20 Score=164.21 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=101.6
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.++|+++..++.
T Consensus 4 ~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~~~~ 71 (242)
T d1mv5a_ 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER------------FYQPTAGEITIDGQPIDNISL 71 (242)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT------------SSCCSBSCEEETTEESTTTSC
T ss_pred EEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hhCCCCCEEEECCEEeccccH
Confidence 5678889954 46789999988 899999999999999999999999 459999999999999988764
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
.. .++.+++++|++..
T Consensus 72 ~~-----~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQ 146 (242)
T d1mv5a_ 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (242)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HH-----HHhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHH
Confidence 33 55678888887532
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 147 Rv~iARal~~~p~ililDEpts---~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 198 (242)
T d1mv5a_ 147 RLAIARAFLRNPKILMLDEATA---SLDSESESMVQKALDSLMKGRTTLVIAHRL 198 (242)
T ss_dssp HHHHHHHHHHCCSEEEEECCSC---SSCSSSCCHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHHHHhcCCCEEEecCCcc---ccCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 79999999 999999999999999987533 99999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.78 E-value=3.4e-20 Score=161.60 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=100.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++ ..++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 4 v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~------------~p~sG~I~~~G~~i~~~~~- 69 (229)
T d3d31a2 4 IESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (229)
T ss_dssp EEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCCEEEEccEeccccch-
Confidence 4567888876 4789999888 89999999999999999999999966 9999999999999876653
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|.+..
T Consensus 70 ------~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred ------hHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhh
Confidence 23578999987644
Q ss_pred -----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+. ++|+....++.+.+.++.+. | +|++|||+
T Consensus 144 ~~P~iLllDEPts---~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~ 188 (229)
T d3d31a2 144 TNPKILLLDEPLS---ALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (229)
T ss_dssp SCCSEEEEESSST---TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCceeecCCCc---CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH
Confidence 69999999 99999999999999999764 6 99999996
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=6.7e-20 Score=160.96 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=103.4
Q ss_pred CceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|. |+|++|+|.++|+++...
T Consensus 3 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i~~~ 70 (241)
T d2pmka1 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF------------YIPENGQVLIDGHDLALA 70 (241)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS------------SCCSEEEEEETTEETTTS
T ss_pred EEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------CCCCCCEEEECCEEeccc
Confidence 3567888884 345789999998 8999999999999999999999994 599999999999999887
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 71 ~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~ 145 (241)
T d2pmka1 71 DPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 145 (241)
T ss_dssp CHHH-----HHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHH
T ss_pred chhh-----hhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHH
Confidence 6543 56789999987533
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+...+.+.+.++.+.- +|++||+++
T Consensus 146 QRvalARal~~~p~ililDEpts---~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 199 (241)
T d2pmka1 146 QRIAIARALVNNPKILIFDEATS---ALDYESEHVIMRNMHKICKGRTVIIIAHRLS 199 (241)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCS---CCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred HHHhhhhhhhcccchhhhhCCcc---ccCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 79999999 999999999999999987633 999999874
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.78 E-value=5.6e-20 Score=161.37 Aligned_cols=124 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|+++|+++...
T Consensus 5 ~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~------------~p~~G~I~~~g~~i~~~ 72 (242)
T d1oxxk2 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASN 72 (242)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEET
T ss_pred EEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc------------CCCCceEEECCEEeecC
Confidence 34678888853 45688999888 89999999999999999999999965 99999999999998775
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .+..++++++++|++..
T Consensus 73 ~~~~--~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 73 GKLI--VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVA 150 (242)
T ss_dssp TEES--SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred chhh--cchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHH
Confidence 4322 12345689999997643
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|.....++.+.+.++.++ | +|++|||++
T Consensus 151 iARaL~~~P~llllDEPt~---~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~ 202 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFS---NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (242)
T ss_dssp HHHHHTTCCSEEEEESTTT---TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHhHHhhcccceeecCCcc---CCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 69999999 99999999999999999764 6 999999963
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2e-20 Score=164.20 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=102.3
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|..+ ..++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|.++|+++..
T Consensus 4 v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~------------~p~sG~I~~~g~~i~~ 71 (240)
T d3dhwc1 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQELTT 71 (240)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEECT
T ss_pred EEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc------------cccCCceEEcCeEeee
Confidence 45677777654 4588999888 89999999999999999999999966 9999999999999877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+.+.- +..++.+++++|++..
T Consensus 72 ~~~~~~--~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRv 149 (240)
T d3dhwc1 72 LSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRV 149 (240)
T ss_dssp TCHHHH--HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHH
T ss_pred CChhhh--hhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 654321 1133679999998654
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+. ++|.....++.+.+.++.++ | +|++|||+
T Consensus 150 aiAraL~~~P~lLllDEPt~---~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl 201 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATS---ALDPATTRSILELLKDINRRLGLTILLITHEM 201 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGG---SSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH
T ss_pred HHhhhhccCCCeEEeccccc---cCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH
Confidence 69999999 99999999999999999775 7 99999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6e-20 Score=162.19 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=103.5
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.+. ..++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|+++|+++.
T Consensus 12 I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~g------------l~~p~~G~I~i~g~~i~ 79 (251)
T d1jj7a_ 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN------------LYQPTGGQLLLDGKPLP 79 (251)
T ss_dssp EEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhc------------ccCCCcCEEEECCEecc
Confidence 4467788899653 3789999998 899999999999999999999999 45999999999999998
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+... .++.+++++|.+..
T Consensus 80 ~~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSG 154 (251)
T d1jj7a_ 80 QYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSG 154 (251)
T ss_dssp GBCHHH-----HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCH
T ss_pred hhhhHH-----HHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCCh
Confidence 876443 56788888887532
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+. ++|..+..++.+.+.++.+. + +|++||++
T Consensus 155 GqkQRvaiARal~~~p~ililDEpTs---~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l 212 (251)
T d1jj7a_ 155 GQRQAVALARALIRKPCVLILDDATS---ALDANSQLQVEQLLYESPERYSRSVLLITQHL 212 (251)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH
T ss_pred hHceEEEEeeccccCCcEEEecCcCc---ccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH
Confidence 79999999 99999999999999998764 5 99999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.76 E-value=2e-19 Score=159.00 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=102.5
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|... ..++++++.+ +|++++|+|+||||||||+++|+|. |+|++|+|.++|.++..
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF------------YDIDEGHILMDGHDLRE 81 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT------------TCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc------------cCCCccEEEECCcccch
Confidence 4467788888644 4789999988 8999999999999999999999994 59999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .+..+++++|++..
T Consensus 82 ~~~~~-----~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGG 156 (253)
T d3b60a1 82 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 156 (253)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred hhhhh-----hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHH
Confidence 66443 45667888876532
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||+++
T Consensus 157 qkQRvaiARal~~~p~ililDEpts---~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 212 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATS---ALDTESERAIQAALDELQKNRTSLVIAHRLS 212 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTS---SCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred HHHHHHHHHHHhcCCCEEEeccccc---cCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 79999999 999999999999999987643 999999874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.74 E-value=4.6e-19 Score=156.79 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.++|.++..
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~g~~i~~ 84 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR------------FYDVTSGQILIDGHNIKD 84 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT------------SSCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHh------------cCCccccccccCCEEccc
Confidence 456788888865 45789999998 899999999999999999999999 459999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|.+..
T Consensus 85 ~~~~~-----lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 159 (255)
T d2hyda1 85 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 159 (255)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHH
Confidence 76433 56788888886532
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||+++
T Consensus 160 ~QRi~iARal~~~p~ililDEpts---~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~ 214 (255)
T d2hyda1 160 KQRLSIARIFLNNPPILILDEATS---ALDLESESIIQEALDVLSKDRTTLIVAHRLS 214 (255)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTT---TCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 999999999999999987643 899999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=1e-17 Score=142.89 Aligned_cols=105 Identities=17% Similarity=0.314 Sum_probs=85.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.. ..++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++.....
T Consensus 4 ev~~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~------------~p~~G~I~~~g~~i~~~~~ 70 (200)
T d1sgwa_ 4 EIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPITKVKG 70 (200)
T ss_dssp EEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGGGGG
T ss_pred EEEEEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc------------ccCCCEEEECCEehhHhcC
Confidence 45678888854 6899999998 89999999999999999999999965 9999999999988765431
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
.+.++++...
T Consensus 71 ----------~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 71 ----------KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp ----------GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHT
T ss_pred ----------cEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHH
Confidence 2333333210
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
.+|+|||.. ++|...+..+.+.+.++.+.
T Consensus 141 ~~~~~llllDEPt~---gLD~~~~~~i~~~l~~~~~~ 174 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVV---AIDEDSKHKVLKSILEILKE 174 (200)
T ss_dssp TSCCSEEEEESTTT---TSCTTTHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEcCccc---ccCHHHHHHHHHHHHHHHhC
Confidence 079999999 99999999999999998765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=4.9e-18 Score=148.59 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=86.9
Q ss_pred HHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec
Q 023887 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (276)
Q Consensus 152 ~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~ 231 (276)
++++.+.+++++|+||||||||||+++|.|.. +|++|+|+++|+++...++. .+.+++++|
T Consensus 17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~------------~p~~G~I~~~G~~i~~~~~~-------~r~ig~v~Q 77 (240)
T d2onka1 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPPE-------RRGIGFVPQ 77 (240)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCTT-------TSCCBCCCS
T ss_pred EEEEEeCCEEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCcCCHH-------HcCceeecc
Confidence 35555666799999999999999999999966 99999999999999776532 346888888
Q ss_pred CCCc------------------------------------------------------------------EEEecCCCCC
Q 023887 232 SGGG------------------------------------------------------------------YLADTPGFNQ 245 (276)
Q Consensus 232 ~~~~------------------------------------------------------------------~iiDtPg~~~ 245 (276)
++.. +++|||+.
T Consensus 78 ~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts-- 155 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS-- 155 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS--
T ss_pred chhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccc--
Confidence 7533 69999999
Q ss_pred CCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++|.....++.+.+.++.+. + ++++|||+
T Consensus 156 -~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~ 187 (240)
T d2onka1 156 -AVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred -cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 99999999999999999765 5 99999986
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=2.4e-16 Score=137.16 Aligned_cols=107 Identities=26% Similarity=0.357 Sum_probs=82.5
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++++.+ +|++++|+|+||||||||+|+|.|. .|++|+|.++|+++...+... ......
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-------------~~~~G~I~~~g~~i~~~~~~~-----~~~~~~ 75 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-------------TSGKGSIQFAGQPLEAWSATK-----LALHRA 75 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-------------CCCSSEEEESSSBGGGSCHHH-----HHHHEE
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-------------CCCceEEEECCEECCcCCHHH-----HHhhce
Confidence 466777777 8999999999999999999999993 367899999998765532210 111111
Q ss_pred EEec----------------------------------------------------------------------CCCcEE
Q 023887 228 LLPL----------------------------------------------------------------------SGGGYL 237 (276)
Q Consensus 228 ~~~~----------------------------------------------------------------------~~~~~i 237 (276)
++++ .+..++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll 155 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 155 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE
Confidence 2211 123479
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|||.. ++|......+.+.+.++++.| ++++|||++
T Consensus 156 lDEPt~---gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~ 193 (231)
T d1l7vc_ 156 LDEPMN---SLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193 (231)
T ss_dssp ESSCST---TCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH
T ss_pred EcCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999 999999999999999999888 999999973
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=1.7e-15 Score=135.25 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=45.1
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
...+.++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~ 98 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL------------EASEGIIKHSGR 98 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEECCSC
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------cCCCcEEEECCE
Confidence 4456788888888 89999999999999999999999955 999999998874
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=7.1e-14 Score=98.33 Aligned_cols=63 Identities=30% Similarity=0.453 Sum_probs=56.6
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccc
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS 66 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~ 66 (276)
++|+|.++ .|.| .|.++++|..|.|++||+|++++..|+|||+|.+++.+ ++.|+|++|+||+
T Consensus 3 ~~G~Vi~~-~~~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~pRk 66 (66)
T d1u0la1 3 RRGIVVSF-HSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRK 66 (66)
T ss_dssp EEEEEEEE-ETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCS
T ss_pred eeEEEEEE-ECCEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcCCC
Confidence 47999999 8888 88887789999999999999888899999999999864 5689999999996
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.44 E-value=7.5e-14 Score=98.47 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=54.0
Q ss_pred CeeEEEecCCCCc-eeccC--CCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccc
Q 023887 1 MRVIVQQSEPSRT-SDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R 65 (276)
++|+|.+| +|+| .|..+ .+|..|.|++||+||+++..|+|||||.+++.+ +++|+|++|+||
T Consensus 2 ~~G~Vik~-~~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~pR 66 (67)
T d1t9ha1 2 PEGKIIKA-LSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKER 66 (67)
T ss_dssp CEEEEEEE-ETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCC
T ss_pred CCEEEEEE-ECCEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEecC
Confidence 47999999 9999 66543 468899999999999888889999999999864 678999999998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.91 E-value=4.7e-10 Score=90.53 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=31.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+++|+|+||+|||||++.|++.. +|..|.+...+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l------------~~~~g~~~~~~~~~ 38 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL------------GKRAIGFWTEEVRD 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------------GGGEEEEEEEEEC-
T ss_pred EEEEECCCCcHHHHHHHHHHhcC------------CCCcceEEECCcch
Confidence 68999999999999999999954 88888888766543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=2.4e-09 Score=86.77 Aligned_cols=55 Identities=33% Similarity=0.482 Sum_probs=39.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEec
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDt 240 (276)
+++|+|+||||||||+|+|.|.. + .++..+| +|+.+..+.. .+..++||
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~-------------------------~-~~~~~~g----~T~~~~~~~~-~~~~ivDt 50 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK-------------------------V-RRGKRPG----VTRKIIEIEW-KNHKIIDM 50 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC-------------------------C-SSSSSTT----CTTSCEEEEE-TTEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-------------------------c-eeeCCCC----Eeeccccccc-ccceeccc
Confidence 68999999999999999999843 1 1233344 6666555544 35678999
Q ss_pred CCCCCC
Q 023887 241 PGFNQP 246 (276)
Q Consensus 241 Pg~~~~ 246 (276)
||+...
T Consensus 51 pG~~~~ 56 (184)
T d2cxxa1 51 PGFGFM 56 (184)
T ss_dssp CCBSCC
T ss_pred CCceec
Confidence 998433
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.79 E-value=2.6e-09 Score=92.93 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|+|+|..
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999999954
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=5.2e-09 Score=82.95 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.+|||||||+|+|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=3.5e-08 Score=79.96 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+|+|.+|||||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=8.3e-08 Score=78.67 Aligned_cols=64 Identities=28% Similarity=0.449 Sum_probs=40.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEec
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDt 240 (276)
+++|+|++|||||||+|+|.|.. .+...+...+ +|.............++|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~~~d~ 76 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK------------------------NLARTSSKPG----KTQTLNFYIINDELHFVDV 76 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-----------------------------------------CCEEEEEETTTEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHhcCCC------------------------ceEEeecccc----eeeecccccccccceEEEE
Confidence 69999999999999999999853 1222222222 5555555555667788999
Q ss_pred CCCCCCCCChhh
Q 023887 241 PGFNQPSLLKVT 252 (276)
Q Consensus 241 Pg~~~~~l~~~~ 252 (276)
|+..........
T Consensus 77 ~~~~~~~~~~~~ 88 (195)
T d1svia_ 77 PGYGFAKVSKSE 88 (195)
T ss_dssp CCBCCCSSCHHH
T ss_pred Eeeccccccccc
Confidence 998666555433
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=6.1e-08 Score=89.41 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=40.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC--CCcE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGY 236 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~--~~~~ 236 (276)
.-.++|+|.+|||||||+|+|.|... ...... ..|. .+||+....+... ++..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~----------------------~~~~~~--~~g~-~~tT~~~~~~~~~~~~~~~ 110 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGN----------------------EEEGAA--KTGV-VEVTMERHPYKHPNIPNVV 110 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT----------------------TSTTSC--CCCC-----CCCEEEECSSCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc----------------------CCCccC--CCCC-CCCceeeeeeeccCCCeEE
Confidence 45699999999999999999999541 000110 1111 1255554445443 3568
Q ss_pred EEecCCCCCCCC
Q 023887 237 LADTPGFNQPSL 248 (276)
Q Consensus 237 iiDtPg~~~~~l 248 (276)
++||||+.....
T Consensus 111 l~DtPG~~~~~~ 122 (400)
T d1tq4a_ 111 FWDLPGIGSTNF 122 (400)
T ss_dssp EEECCCGGGSSC
T ss_pred EEeCCCcccccc
Confidence 999999965543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=1.7e-07 Score=74.00 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|-+++++|++|||||||+|+|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=98.54 E-value=2.9e-08 Score=80.51 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEecCCCChhHHHHHHcCCC
Q 023887 162 TVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|+|.+|||||||+|+|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.51 E-value=1.5e-08 Score=82.43 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.|+|+|++|||||||+|+|.|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999843
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=1.1e-07 Score=76.34 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|||||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=2.8e-07 Score=74.52 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-+++|+|.+|||||||+|+|+|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=9.8e-07 Score=70.49 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+|+|.+|||||||||+|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.05 E-value=3.7e-06 Score=68.55 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|||||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999843
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.04 E-value=8.2e-06 Score=65.87 Aligned_cols=83 Identities=12% Similarity=0.192 Sum_probs=58.4
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhh-------c-CceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-------W-GYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-------~-~~~~~~~s~ 144 (276)
.++.+|.+++|+++..+ .... -.+.+..+...++|+++|+||+|+.+.+..+.....++. + ..+++++|+
T Consensus 79 ~l~~~d~~ilv~d~~~g-~~~~-~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA 156 (179)
T d1wb1a4 79 AADIIDLALIVVDAKEG-PKTQ-TGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 156 (179)
T ss_dssp HTTSCCEEEEEEETTTC-SCHH-HHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred hhhhccccccccccccc-cchh-hhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 57789999999999754 3332 233445567789999999999999987654322222111 1 246788999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.++++|...+
T Consensus 157 ~~g~gi~eL~~~I 169 (179)
T d1wb1a4 157 KTGFGVDELKNLI 169 (179)
T ss_dssp TTCTTHHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 9999999887764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=4.3e-06 Score=66.39 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|.+|||||||+|+|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999853
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.96 E-value=2.6e-06 Score=74.82 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+..++|||.|+||||||+|+|++...+....+.-+.-+|.-|.+.+...+...++
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~ 64 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLC 64 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhh
Confidence 5689999999999999999999754222333444445777787776665544433
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=1.7e-05 Score=62.99 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=57.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccchH
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLGLD 151 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~ 151 (276)
.+.++|.++++.+.+.+ +.. ....++...+..++|+++|+||+|+.++... +....+.+.++ +++.+|+.++.+++
T Consensus 77 ~~~~ad~i~~~~~~~~~-~~~-~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 77 MIREADLVLFVVDGKRG-ITK-EDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYSLGFGEPIPVSAEHNINLD 153 (171)
T ss_dssp HHTTCSEEEEEEETTTC-CCH-HHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred ccccCcEEEEeeccccc-ccc-cccccccccccccccccccchhhhhhhhhhh-HHHHHHHhcCCCCeEEEecCCCCCHH
Confidence 57899999999998754 222 2233333446779999999999999754333 33334445555 67889999999998
Q ss_pred HHHhhc
Q 023887 152 SLLQRL 157 (276)
Q Consensus 152 ~l~~~l 157 (276)
.|...+
T Consensus 154 ~L~~~i 159 (171)
T d1mkya1 154 TMLETI 159 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.87 E-value=2.1e-06 Score=69.53 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++++|++|||||||+|+|++..
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhc
Confidence 4469999999999999999999854
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.85 E-value=7e-06 Score=72.26 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+||+|.||||||||+|+|.|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=7.7e-06 Score=63.05 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|||||||+|.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.84 E-value=6.5e-06 Score=71.46 Aligned_cols=54 Identities=31% Similarity=0.289 Sum_probs=37.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.+++|||.|+||||||+|+|++.. +....+.-+..+|.-|-+.+...+...++.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~-~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~ 56 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAE 56 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC-CccccCCCCCCCCceEEEecccHhHHHHHH
Confidence 579999999999999999999754 223344445567777888777666555543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=97.83 E-value=8e-06 Score=64.38 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|++|||||||+|.|.+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999998854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.83 E-value=7.4e-06 Score=63.39 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|++|||||||+|.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999873
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=3.2e-05 Score=62.63 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=57.8
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhh-----cCceeEEEecCCc
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-----WGYEPLFCSVESK 147 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~ 147 (276)
.+.++|.+++++|+..+ +.. .-..++..++..++|+++|+||+|+.++...++....+++ ...+++.+|+.++
T Consensus 102 ~~~~~~~vi~viD~~~~-~~~-~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~ 179 (195)
T d1svia_ 102 TREELKAVVQIVDLRHA-PSN-DDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETK 179 (195)
T ss_dssp HCTTEEEEEEEEETTSC-CCH-HHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred cccchhhhhhhhhcccc-ccc-cccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCC
Confidence 45678999999999765 332 2334455557789999999999999876544333222221 2346888999999
Q ss_pred cchHHHHhhc
Q 023887 148 LGLDSLLQRL 157 (276)
Q Consensus 148 ~~l~~l~~~l 157 (276)
.++++|...+
T Consensus 180 ~gi~el~~~i 189 (195)
T d1svia_ 180 KGKDEAWGAI 189 (195)
T ss_dssp TTHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9998887654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=1.3e-05 Score=63.62 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 5899999999999999998763
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.76 E-value=1.4e-05 Score=63.23 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=6.3e-05 Score=65.08 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|.-++|||||||+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999965
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.71 E-value=4.6e-05 Score=66.34 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|..++|||||||+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999966
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.70 E-value=3.7e-05 Score=61.37 Aligned_cols=82 Identities=18% Similarity=0.181 Sum_probs=53.5
Q ss_pred hhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhh-hcCc-eeEEEecCCccc
Q 023887 73 PVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGY-EPLFCSVESKLG 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~~ 149 (276)
.++++|.+++|+|+..+.... ..+.+.+.. ...++|+++|+||+|+.+..+. +...+. .++. +++.+|+.++.+
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~-~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~~~g 157 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKP-LVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 157 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGG-GTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred ccccccceeeeechhhhhcccccchhhheec-cccchhhhhhhcccccccCHHH--HHHHHHhhcccCceEEEecCCCCC
Confidence 578999999999998763221 233333321 1246799999999999764322 122222 2343 678889999888
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++.|...+
T Consensus 158 i~~L~~~i 165 (178)
T d1wf3a1 158 VAELKADL 165 (178)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.69 E-value=1.1e-05 Score=67.77 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++-+++|+|++++|||||+|+|++.
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhh
Confidence 3446999999999999999999874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=2.3e-05 Score=62.69 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=20.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++++|.+|||||||+|.+.+.
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999998863
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.64 E-value=5.6e-05 Score=61.57 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|+.++|||||+|+|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 58999999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.64 E-value=7e-05 Score=59.73 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=61.3
Q ss_pred hhccccEEEEEEEcCCCCCC-HHHHHHHHHH--HHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVE--AESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~--a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
.+..+|.++.+.++...... .......+.. ....++|+++|+||+|+.+++..+...+.+...+.+++.+|+.++.+
T Consensus 76 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 155 (180)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 46889999999997532111 1122222221 12357899999999999998877777777777788999999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
+++|...+
T Consensus 156 id~L~~~i 163 (180)
T d1udxa2 156 LPALKEAL 163 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=2.5e-05 Score=63.57 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 4899999999999999998863
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=3.4e-05 Score=63.01 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.|+|+|++|||||||+|.|.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999999743
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=3.5e-05 Score=61.13 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.56 E-value=0.00021 Score=58.55 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=56.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHHHHH----HHHhhhc---CceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTW----KSRLHTW---GYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~~~~~~----~~~~~~~---~~~~~~~s~ 144 (276)
.++.+|.+++|+++....... .-.+.+..+...++ ++++++||+|+.+....... ...+... .++++.+|+
T Consensus 106 ~~~~ad~ailvVda~~gi~~~-~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA 184 (205)
T d2qn6a3 106 GAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184 (205)
T ss_dssp TSSCCSEEEEEEETTSCSSCH-HHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ceeccccccccccccccccch-hHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeC
Confidence 468899999999998753343 33345556666787 56667999999887544322 2222222 246788999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.++++|...+
T Consensus 185 ~~g~nI~~L~e~i 197 (205)
T d2qn6a3 185 LHKINIDSLIEGI 197 (205)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCChHHHHHHH
Confidence 9999998887654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=4e-05 Score=60.87 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.+|||||||+|.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.55 E-value=1.8e-05 Score=62.33 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+..+++|+|.+|||||||+|.|.+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999999854
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=4.1e-05 Score=61.01 Aligned_cols=22 Identities=41% Similarity=0.757 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998763
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=4.8e-05 Score=60.25 Aligned_cols=21 Identities=38% Similarity=0.740 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.+|||||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998866
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.55 E-value=6e-06 Score=68.73 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++++|+.++|||||+++|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.51 E-value=0.00012 Score=58.43 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=56.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH--HHHH----HHHhhhcCc-eeEEEecC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV--LNTW----KSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~----~~~~~~~~~-~~~~~s~~ 145 (276)
.+.++|.+++|+++..+. . .....++..++..++|.++|+||+|+..... .... ...+...++ +++.+|+.
T Consensus 88 ~~~~~dvii~v~d~~~~~-~-~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~ 165 (186)
T d1mkya2 88 SIEKADVVVIVLDATQGI-T-RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 165 (186)
T ss_dssp HHHHCSEEEEEEETTTCC-C-HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred HHhcCCEEEEeecccccc-h-hhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence 578999999999997543 2 2334445556778999999999999865431 1122 222222333 68999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.++++|...+
T Consensus 166 ~g~gv~~L~~~i 177 (186)
T d1mkya2 166 KGWNIDRMIDAM 177 (186)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999998877654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=2.2e-05 Score=63.31 Aligned_cols=24 Identities=42% Similarity=0.764 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
|+.++|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999999753
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.49 E-value=5.1e-05 Score=59.70 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.+|||||||+|.+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998885
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=5.7e-05 Score=59.54 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.48 E-value=1.8e-05 Score=61.44 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.+.+..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=97.48 E-value=5.7e-05 Score=59.74 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|++|||||||+|.|.+..
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998743
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=97.48 E-value=5.2e-05 Score=59.75 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++|+|.+|||||||+|.|.+..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=6.9e-05 Score=58.74 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=2.4e-05 Score=61.08 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|+||||||||+|.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.44 E-value=6.3e-05 Score=59.55 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 5899999999999999998863
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=97.44 E-value=5.1e-05 Score=59.73 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|++|||||||+|.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=3.6e-05 Score=61.25 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=9.2
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998873
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.42 E-value=9.8e-05 Score=59.10 Aligned_cols=22 Identities=45% Similarity=0.753 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||+|.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.41 E-value=2.2e-05 Score=61.54 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+.++|+|++|||||||.+.|+...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998644
|
| >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00014 Score=50.46 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=45.7
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|-++|.+.-+ |.|.+.=+ +|.+..|.++|++++.+..+.+||.|.++..+++...|-|.
T Consensus 8 ~~G~V~e~lg~~~f~V~l~-ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi 67 (71)
T d1ah9a_ 8 MQGTVLETLPNTMFRVELE-NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEET-TSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEE
Confidence 4467777755 44577433 78999999999999888899999999999877666666553
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=97.40 E-value=5.4e-05 Score=65.63 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++++|+.|+|||||+.+|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999854
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00011 Score=57.84 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=56.7
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHH----HHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~----a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
......++|.+++|+|+..|. +...+.+++.. ....+.|+++|.||+|+..+.. .+.......+++...+.+|
T Consensus 69 ~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S 147 (167)
T d1xtqa1 69 PQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 147 (167)
T ss_dssp CGGGTSSCCEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred cchhhhhhhhhhhhcccchhh-hhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEe
Confidence 344678999999999998763 22334443322 2245689999999999854311 1222233455677888899
Q ss_pred cCCccchHHHHhh
Q 023887 144 VESKLGLDSLLQR 156 (276)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (276)
+.++.+++++-..
T Consensus 148 ak~~~~v~~~f~~ 160 (167)
T d1xtqa1 148 AKENQTAVDVFRR 160 (167)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH
Confidence 9999888877544
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=97.34 E-value=9e-05 Score=58.74 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.+.+..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4479999999999999999998643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=5.8e-05 Score=59.79 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999998854
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.33 E-value=0.00011 Score=57.79 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=59.0
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+....++|.+++|+|+..+.. ...+.+++.... ..++|+++|.||+|+.++.. .+......++++++.+.+|
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (164)
T d1z2aa1 66 AITKAYYRGAQACVLVFSTTDRES-FEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 144 (164)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred hhhhhhhccCceEEEEEeccchhh-hhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEec
Confidence 333456889999999999976532 223444443332 46889999999999965311 1122233455678889999
Q ss_pred cCCccchHHHHhh
Q 023887 144 VESKLGLDSLLQR 156 (276)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (276)
+.++.+++++-..
T Consensus 145 ak~g~~v~e~f~~ 157 (164)
T d1z2aa1 145 VKEDLNVSEVFKY 157 (164)
T ss_dssp TTTTBSSHHHHHH
T ss_pred cCCCcCHHHHHHH
Confidence 9999998887544
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00012 Score=58.16 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+...
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998863
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=4.8e-05 Score=63.21 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+||||||||||+|.|+..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999999753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=97.31 E-value=0.00013 Score=58.15 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=22.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++++|.+|||||||++.+.+..
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998743
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00019 Score=62.26 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+|+++|+.++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 368899999999999999999854
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=6.7e-05 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||||.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999998764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.28 E-value=0.00087 Score=54.14 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=57.8
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCCHHHHH----HHHHHhhhcC---ceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLN----TWKSRLHTWG---YEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~~~~~~----~~~~~~~~~~---~~~~~~s~ 144 (276)
.++.+|.+++|+++..+.... ...+.+..++..++| +++++||+|+.+..... .....+...+ ++++.+|+
T Consensus 98 ~~~~~d~~ilvvda~~g~~~~-~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA 176 (195)
T d1kk1a3 98 GASLMDGAILVIAANEPCPRP-QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 176 (195)
T ss_dssp CGGGCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred ccccccccccccchhhhhhhh-hhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEEC
Confidence 478899999999998654443 344455566777776 56679999999875332 2222333333 35788999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++.|...+
T Consensus 177 ~~G~ni~~Ll~~I 189 (195)
T d1kk1a3 177 LHGANIDVLVKAI 189 (195)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00015 Score=57.47 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|.+|||||||+|.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00016 Score=56.76 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|+|.+|||||||||.+.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHh
Confidence 35799999999999999999875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.25 E-value=6.9e-05 Score=58.66 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.|+.++|.|+|||||||+.+.|....
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.24 E-value=0.00018 Score=56.60 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.+...
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999999863
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00018 Score=56.79 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999999853
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00017 Score=57.18 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=59.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH--HhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA--ESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a--~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
.+.+....++|.+++|+|+..+.. ...+.+++... ...+.|+++|.||+||.+....++........+++.+.+|+.
T Consensus 67 ~~~~~~~~~~~~~ilv~d~~~~~S-f~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak 145 (170)
T d1i2ma_ 67 GLRDGYYIQAQCAIIMFDVTSRVT-YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 145 (170)
T ss_dssp SCGGGGTTTCCEEEEEEETTSGGG-GTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTT
T ss_pred eecchhcccccchhhccccccccc-cchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCC
Confidence 344456889999999999987632 22333333322 245789999999999976532222223445567788999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
.+.+++++-..
T Consensus 146 ~~~~v~e~f~~ 156 (170)
T d1i2ma_ 146 SNYNFEKPFLW 156 (170)
T ss_dssp TTBTTTHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99888776554
|
| >d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translational initiation factor 1, IF1 species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=6.7e-05 Score=52.19 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=45.1
Q ss_pred CeeEEEecCC-CCceeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEE
Q 023887 1 MRVIVQQSEP-SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59 (276)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i 59 (276)
|.|+|.+.-+ |+|.+.=+ +|.+..|.++|++++.+..+.+||.|.++..+++...|-|
T Consensus 9 ~~G~V~~~l~~~~f~V~l~-ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrI 67 (71)
T d1hr0w_ 9 TEGVVTEALPNATFRVKLD-SGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp CEEECCCCCTTTBCCCEES-SSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEEECCCCEEEEEEC-CCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEE
Confidence 4577777755 44566333 6888999999999988889999999999987766666655
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.22 E-value=7.4e-05 Score=58.63 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.|++||||||+.+.|..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.22 E-value=0.00052 Score=57.14 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=37.8
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCH
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~ 122 (276)
.++.+|.+++|+|+... ... .-.+.+..+...++|+++++||+|+.+.
T Consensus 90 ~~~~~D~~ilVvda~~g-~~~-~~~~~~~~~~~~~~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 90 GGALADLAILIVDINEG-FKP-QTQEALNILRMYRTPFVVAANKIDRIHG 137 (227)
T ss_dssp SSBSCSEEEEEEETTTC-CCH-HHHHHHHHHHHTTCCEEEEEECGGGSTT
T ss_pred cccccceEEEEEecccC-ccc-chhHHHHHhhcCCCeEEEEEECccCCCc
Confidence 57889999999999753 333 3455666677889999999999998753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=7.4e-05 Score=58.96 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++++|+|.+|||||||++.|...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999988764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00014 Score=57.48 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=55.9
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
.+.+....++|.+++|+|+..|. +...+..++.... ..+.|+++|.||+||.+... .....+....++.+.+.
T Consensus 63 ~~~~~~~~~~d~~ilv~d~t~~~-s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 141 (168)
T d2gjsa1 63 WLPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIE 141 (168)
T ss_dssp -CHHHHHTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEE
T ss_pred eecccchhhhhhhceeccccccc-cccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEE
Confidence 33445678999999999997652 2333444433322 24568999999999965311 11222334556778888
Q ss_pred EecCCccchHHHHhh
Q 023887 142 CSVESKLGLDSLLQR 156 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (276)
+|+.++.+++++-..
T Consensus 142 ~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 142 TSAALHHNVQALFEG 156 (168)
T ss_dssp CBTTTTBSHHHHHHH
T ss_pred EeCCCCcCHHHHHHH
Confidence 999999888876544
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.00022 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00026 Score=56.07 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|.+|||||||||.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00022 Score=56.09 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|.+|||||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=97.18 E-value=8.3e-05 Score=61.33 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-.++++|+.++|||||+|+|++
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHH
Confidence 3589999999999999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.15 E-value=0.0001 Score=57.64 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++..++|.|+|||||||+.+.|....
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998644
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.11 E-value=9.3e-05 Score=56.83 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.+.+.|+||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999998854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.10 E-value=0.0001 Score=57.41 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|.++.|+|.|||||||+-++|+..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999998853
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=97.08 E-value=0.0003 Score=55.96 Aligned_cols=86 Identities=12% Similarity=0.019 Sum_probs=54.1
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPL 140 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~ 140 (276)
.+....++|.+++|+|+.++.. .....+++... ...+.|+++|.||+|+.+....++....+ ...+++++
T Consensus 78 ~~~~~~~~~~ii~v~d~~d~~s-~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 156 (182)
T d1moza_ 78 WRCYYADTAAVIFVVDSTDKDR-MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV 156 (182)
T ss_dssp GGGTTTTEEEEEEEEETTCTTT-HHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred HHhhhccceeEEEEeeeccccc-chhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEE
Confidence 3446789999999999976532 22333333221 23467999999999996532122222221 22345678
Q ss_pred EEecCCccchHHHHhh
Q 023887 141 FCSVESKLGLDSLLQR 156 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (276)
.+|+.++.+++++..+
T Consensus 157 e~SA~~g~gv~e~~~~ 172 (182)
T d1moza_ 157 ASSAIKGEGITEGLDW 172 (182)
T ss_dssp EEBGGGTBTHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 9999999998876554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.06 E-value=0.00018 Score=62.50 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.7
Q ss_pred EEEEEecCCCChhHHHHHHc
Q 023887 161 TTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++++|+.|+|||||+.+|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 59999999999999999985
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=0.00077 Score=51.93 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=56.3
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHH
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~ 152 (276)
.+.++|.+++|+++..|..... ..+. ......++++++||.|+.+....+.....+. ...+++.+|+.++.+++.
T Consensus 77 ~~~~ad~ii~v~d~~~~~~~~~--~~~~--~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~-~~~~~~~vSA~~g~gi~~ 151 (160)
T d1xzpa2 77 EIEKADIVLFVLDASSPLDEED--RKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG-TDRHMVKISALKGEGLEK 151 (160)
T ss_dssp HHHHCSEEEEEEETTSCCCHHH--HHHH--HHHTTSSEEEEEEECSSCCCCCHHHHHHHHT-CSTTEEEEEGGGTCCHHH
T ss_pred HHHhCCEEEEEEeCCCCcchhh--hhhh--hhcccccceeeeeeccccchhhhHHHHHHhC-CCCcEEEEECCCCCCHHH
Confidence 5789999999999987643321 1111 1235678999999999987654444433332 345789999999999999
Q ss_pred HHhhc
Q 023887 153 LLQRL 157 (276)
Q Consensus 153 l~~~l 157 (276)
|...+
T Consensus 152 L~~~I 156 (160)
T d1xzpa2 152 LEESI 156 (160)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=97.06 E-value=0.00021 Score=56.28 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=54.5
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHH----HHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRF----LVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~----l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 141 (276)
+....++|.+++|+|+..+. +......+ +......++|+++|.||+|+.+........+.+ ..-.++++.
T Consensus 78 ~~~~~~~~~ii~v~d~~d~~-s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (176)
T d1fzqa_ 78 RSYFENTDILIYVIDSADRK-RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (176)
T ss_dssp HHHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHhhccceeEEeecccccc-chhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEE
Confidence 34678999999999987543 22222222 222223578999999999997643333222222 112346778
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++-.++
T Consensus 157 ~SA~tg~gv~e~~~~l 172 (176)
T d1fzqa_ 157 CSALTGEGVQDGMNWV 172 (176)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 8999999998876554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.05 E-value=0.00033 Score=58.50 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=15.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|+|++||||||.+=-|+-
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999876664
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.05 E-value=0.00019 Score=56.01 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.+|||||||+|.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999885
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.05 E-value=0.00012 Score=56.73 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.++|.|+|||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999998644
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00011 Score=57.88 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||||.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.04 E-value=0.00012 Score=60.35 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|++|||||||++.|+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00017 Score=57.27 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+++++|.+|||||||++.+...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36889999999999999998864
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00015 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|+|+|||||||+.+.|....
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999998744
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00016 Score=58.44 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.1
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.++|+||||||||||++.|+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00045 Score=54.34 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=56.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHH----HHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~----~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|...|.. ...+.+++. .......|.++|.||+|+.++. ..+...+..++++.+.+.+|+.
T Consensus 72 ~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 150 (171)
T d2erya1 72 QYMRTGEGFLLVFSVTDRGS-FEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAK 150 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTT
T ss_pred ccccccceEEEeeccccccc-hhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCC
Confidence 35789999999999987632 223333332 2224567889999999986431 1122334456678888899999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++++-..+
T Consensus 151 ~~~~i~e~f~~l 162 (171)
T d2erya1 151 IRMNVDQAFHEL 162 (171)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 999988776543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00013 Score=56.89 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.+.|.|++|+|||||++.+....
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999998743
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00017 Score=56.78 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00014 Score=56.48 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=53.7
Q ss_pred hhccccEEEEEEEcCCCCC-CHHHH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhh-cCceeEEEecCCccc
Q 023887 73 PVANVDHLLLLFSMDQPKL-EPFAL-TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~-~~~~l-~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 149 (276)
...++|.++++++...+.. ....+ ..++.. ...++|+++|+||+||.+++. .+.+ .+.+++.+|+.++.+
T Consensus 77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~Dl~~~~~------~~~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKADITGETL------GMSEVNGHALIRLSARTGEG 149 (161)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC------EEEEETTEEEEECCTTTCTT
T ss_pred HHHhccccceeeccccccchhhhhhhhhhhhh-cccccceeeccchhhhhhhHH------HHHHhCCCcEEEEECCCCCC
Confidence 5689999999999876643 32322 233322 235789999999999865421 1222 245889999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
+++|...+
T Consensus 150 i~~L~~~l 157 (161)
T d2gj8a1 150 VDVLRNHL 157 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.97 E-value=0.00038 Score=54.91 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=54.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHH----HHHHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRF----LVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~----l~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+|+..+.. ...+..+ .......+.|+++|.||+|+..... .++..+...+.+++.+.+
T Consensus 68 ~~~~~~~~~~~~llv~d~~d~~S-f~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~ 146 (169)
T d1x1ra1 68 MREQYMRTGDGFLIVYSVTDKAS-FEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 146 (169)
T ss_dssp SHHHHHHHCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred chhhhhhhccEEEEecccccchh-hhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEE
Confidence 33446789999999999976532 1123322 2222345789999999999865421 123334455677888999
Q ss_pred ecCCcc-chHHHHh
Q 023887 143 SVESKL-GLDSLLQ 155 (276)
Q Consensus 143 s~~~~~-~l~~l~~ 155 (276)
|+.++. +++++-.
T Consensus 147 Sak~~~~nV~~~F~ 160 (169)
T d1x1ra1 147 SAKDPPLNVDKTFH 160 (169)
T ss_dssp BCSSSCBSHHHHHH
T ss_pred cCCCCCcCHHHHHH
Confidence 987554 7776543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0006 Score=53.91 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecCC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
....++|.+++|+|+..|. +...+.+++.... ..+.|+++|.||+|+.+.. ..+.........+.+.+.+|+.+
T Consensus 72 ~~~~~~~~~i~v~d~~~~~-S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (175)
T d2f9la1 72 AYYRGAVGALLVYDIAKHL-TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALD 150 (175)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHhhccCeEEEEEECCCcc-cchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCC
Confidence 4578999999999998763 2223444443333 2457899999999996431 11222334455677889999999
Q ss_pred ccchHHHHhh
Q 023887 147 KLGLDSLLQR 156 (276)
Q Consensus 147 ~~~l~~l~~~ 156 (276)
+.+++++-..
T Consensus 151 g~~i~e~f~~ 160 (175)
T d2f9la1 151 STNVEEAFKN 160 (175)
T ss_dssp CTTHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 9988877443
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.96 E-value=0.00055 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|+-++|||||+|.|++..
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCC
T ss_pred eEEEEEEccCCcHHHHHHHHHhhh
Confidence 469999999999999999999854
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.96 E-value=0.00019 Score=55.74 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+.+.|.|+|||||||+.+.|....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5788999999999999999999865
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.0006 Score=53.35 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=56.3
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEecCCc
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVESK 147 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~~~ 147 (276)
...++|.+++|+++..+. +...+.+++.... ..++|+++|.||+|+.+... .+......+..+++.+.+|+.++
T Consensus 71 ~~~~~~~~iiv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 149 (166)
T d1ctqa_ 71 YMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTR 149 (166)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred hhhcccccceeecccccc-cHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCC
Confidence 578999999999997652 2223444433322 24679999999999965321 12222334556788899999999
Q ss_pred cchHHHHhh
Q 023887 148 LGLDSLLQR 156 (276)
Q Consensus 148 ~~l~~l~~~ 156 (276)
.+++++-..
T Consensus 150 ~gi~e~f~~ 158 (166)
T d1ctqa_ 150 QGVEDAFYT 158 (166)
T ss_dssp TTHHHHHHH
T ss_pred cCHHHHHHH
Confidence 999887654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00037 Score=55.16 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=56.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
.....++|.+++|+|+..+. +...+.+++... ...+.|.++|.||+|+.... ..+.......+.+.+.+.+|+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (173)
T d2fn4a1 72 EQYMRAGHGFLLVFAINDRQ-SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 150 (173)
T ss_dssp HHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred chhhccceeeeeeccccccc-ccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeC
Confidence 34678999999999997652 223344443322 23567999999999985431 112223344566788889999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++++-..
T Consensus 151 k~g~gv~e~f~~ 162 (173)
T d2fn4a1 151 KLRLNVDEAFEQ 162 (173)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 999998887654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.00015 Score=55.29 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.+.|+|++||||||+-+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.93 E-value=0.0004 Score=54.63 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=54.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecCC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
..+.++|.+++|+|+..|.. ...+.++.... .....|+++|.||+|+.+... .+......++++++.+.+|+.+
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 151 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEES-FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 151 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHhcCCEEEEEEECccchh-hhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCC
Confidence 35789999999999876521 22233333222 234567778889999854311 1222233456788999999999
Q ss_pred ccchHHHHhh
Q 023887 147 KLGLDSLLQR 156 (276)
Q Consensus 147 ~~~l~~l~~~ 156 (276)
+.+++++-..
T Consensus 152 g~gv~e~f~~ 161 (169)
T d3raba_ 152 NINVKQTFER 161 (169)
T ss_dssp TBSHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 9988887554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.93 E-value=0.00022 Score=56.31 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=56.3
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|+..+. +...+.+++... ...+.|+++|.||+|+.+.. ..+.......+++++.+.+|+.
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 149 (168)
T d1u8za_ 71 NYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred hcccccceeEEEeeccchh-hhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCC
Confidence 4577999999999997653 223334443222 24578999999999985431 1123334455667888999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 150 ~g~gv~e~f~~ 160 (168)
T d1u8za_ 150 TRANVDKVFFD 160 (168)
T ss_dssp TCTTHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 99998876543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00019 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.+|||||||+|.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.001 Score=51.74 Aligned_cols=86 Identities=10% Similarity=0.207 Sum_probs=58.1
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHH---HHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~---a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+....++|.+++|+|+..+. +...+.+++.. ....+.|.++|.||+|+.+.. ..+........++++.+.+|+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~-s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk 145 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNVN-SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 145 (164)
T ss_dssp HHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhhccceEEEeecccccc-chhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCC
Confidence 34688999999999997653 22233333332 233567888999999996431 1223334456677888999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++++-..+
T Consensus 146 ~g~~v~e~f~~i 157 (164)
T d1yzqa1 146 AGYNVKQLFRRV 157 (164)
T ss_dssp TCTTHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 999988876654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.91 E-value=0.00018 Score=55.82 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++|+|+|||||||+-+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.001 Score=52.52 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=53.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
...++|.+++|+|+..+. +...+.++..... ..++|+++|.||+||.+... .+........++++.+.+|+..
T Consensus 74 ~~~~~~~~ilvfd~t~~~-s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~ 152 (172)
T d2g3ya1 74 CMQVGDAYLIVYSITDRA-SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 152 (172)
T ss_dssp CCCCCSEEEEEEETTCHH-HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred cccccceeeeeecccccc-hhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCC
Confidence 467999999999997642 2223444432222 24689999999999854311 1111223345577888899999
Q ss_pred ccchHHHHhh
Q 023887 147 KLGLDSLLQR 156 (276)
Q Consensus 147 ~~~l~~l~~~ 156 (276)
+.+++++-..
T Consensus 153 g~~i~~~f~~ 162 (172)
T d2g3ya1 153 QHNVKELFEG 162 (172)
T ss_dssp TBSHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 9998876544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.00027 Score=56.90 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999998763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00023 Score=55.88 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00021 Score=63.46 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+..+++|.|+||||||||+|.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.00021 Score=57.71 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-++|+||||||||||++.|+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.85 E-value=0.00022 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.4
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++++|.|++||||||+.+.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999999975
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00012 Score=58.32 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|.++.|+|+|||||||+-+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999974
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.00066 Score=54.18 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+--+++++|.+|||||||++.+.+..
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999888743
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00088 Score=52.39 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=57.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+....++|.+++|+|+..|... ..+..++... ...+.|+++|.||+|+.++. ..+.......+++...+.+
T Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 146 (167)
T d1z0ja1 68 ALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 146 (167)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhhccceEEEeeechhhhh-hhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEE
Confidence 3334467899999999999765322 2334433222 24567888999999995431 1122233445667888999
Q ss_pred ecCCccchHHHHhh
Q 023887 143 SVESKLGLDSLLQR 156 (276)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (276)
|+..+.+++++-..
T Consensus 147 SAk~~~nV~e~f~~ 160 (167)
T d1z0ja1 147 SAKNAININELFIE 160 (167)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999998886554
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00076 Score=52.42 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
...++|.+++|+|+..|. +...+.+++.... ..+.|+++|.||+||.++. ..+...+...+++.+.+.+|+.+
T Consensus 72 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt 150 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMA-SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 150 (165)
T ss_dssp HHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred eecCCCceEEEEEeehhh-hhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEeccc
Confidence 568999999999997763 2222333333222 3467999999999985431 11222334456778888889865
Q ss_pred cc
Q 023887 147 KL 148 (276)
Q Consensus 147 ~~ 148 (276)
+.
T Consensus 151 ~~ 152 (165)
T d1z06a1 151 PN 152 (165)
T ss_dssp GG
T ss_pred CC
Confidence 44
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00029 Score=55.50 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||||.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998763
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.79 E-value=0.00029 Score=55.82 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|.|++|||||||.+.|..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.79 E-value=0.00054 Score=53.30 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=54.2
Q ss_pred cccchhccccEEEEEEEcCCCCCCHH---HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH--hhhc---CceeE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPF---ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR--LHTW---GYEPL 140 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~---~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~--~~~~---~~~~~ 140 (276)
..+....++|.+++++++..+..... .+.+.+......++|+++|.||+|+.+.......... +..+ .+.++
T Consensus 62 ~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T d1ksha_ 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 141 (165)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEE
Confidence 34556789999999999865322111 2223332223467899999999999643211211122 1122 34678
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++..++
T Consensus 142 ~~Sa~~g~gv~e~~~~l 158 (165)
T d1ksha_ 142 GCSAVTGEDLLPGIDWL 158 (165)
T ss_dssp ECCTTTCTTHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 89999999988766543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00029 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||||.+...
T Consensus 6 iKivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999998863
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.77 E-value=0.0011 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|+|++||||||.+--|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999987764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.76 E-value=0.0017 Score=50.79 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=53.0
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcC-ceeE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-------STGIPLTLALNKVELVDEEV---LNTWKSRLHTWG-YEPL 140 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~-------~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~-~~~~ 140 (276)
.....+|.+++|+|+..+. +...+..++.... ..++|+++|.||+|+.+... .+...+...+++ ++.+
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 149 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLF 149 (175)
T ss_dssp CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEE
T ss_pred HHhhccceEEEEeeccccc-ccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEE
Confidence 3567899999999997653 2223333332221 13679999999999865321 112222334454 4678
Q ss_pred EEecCCccchHHHHhh
Q 023887 141 FCSVESKLGLDSLLQR 156 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~ 156 (276)
.+|+.++.+++++-..
T Consensus 150 e~SA~~g~gv~e~f~~ 165 (175)
T d1ky3a_ 150 LTSAKNAINVDTAFEE 165 (175)
T ss_dssp EEBTTTTBSHHHHHHH
T ss_pred EEeCCCCcCHHHHHHH
Confidence 8999999998886543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.76 E-value=0.00031 Score=56.41 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+++|+|+|||||||+.+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00033 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.+|||||||+|.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998743
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.74 E-value=0.0017 Score=51.01 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=51.1
Q ss_pred chhccccEEEEEEEcCCCC----------CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcC----
Q 023887 72 PPVANVDHLLLLFSMDQPK----------LEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWG---- 136 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~----------~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~---- 136 (276)
....++|.+++|+|+..+. ..... ..++..++..++|+++|+||+|+.++.+ ............
T Consensus 77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d-~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T d2cxxa1 77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPID-VEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI 155 (184)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHH-HHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred hcccccchheeeeeccccchhhhhhhhccccHHH-HHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhccccccc
Confidence 3567899999999975321 11110 1223334567999999999999875432 222211111122
Q ss_pred -ceeEEEecCCccchHHHHhhc
Q 023887 137 -YEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 137 -~~~~~~s~~~~~~l~~l~~~l 157 (276)
..++.+|+.++.++++|...+
T Consensus 156 ~~~~~~vSA~~g~gi~~L~~~i 177 (184)
T d2cxxa1 156 DKVFIPISAKFGDNIERLKNRI 177 (184)
T ss_dssp HHHEEECCTTTCTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 236778888888888877653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00085 Score=52.54 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=52.6
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHH---HHHH--HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEA--ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a--~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
...++|.+++|+|+..|... ..+..+ +... ...++|+++|.||+|+.++. ..+...+..++++.+.+.+|+.
T Consensus 70 ~~~~a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak 148 (171)
T d2erxa1 70 SISKGHAFILVYSITSRQSL-EELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 148 (171)
T ss_dssp HHHHCSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred cccceeEEEEEeecccccch-hcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCC
Confidence 57899999999999765321 122222 2222 23567999999999995431 1112223345567788899999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 149 ~~~~v~e~f~~ 159 (171)
T d2erxa1 149 LNHNVKELFQE 159 (171)
T ss_dssp TTBSHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 99998887554
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.00065 Score=53.45 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=57.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+....++|.+++|+|+..+. +...+..++... ...+.|+++|.||+|+.+... .+.......+.+++.+.+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~ 147 (174)
T d2bmea1 69 SVTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLET 147 (174)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHhhhCCEEEEEEecccch-hHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEe
Confidence 33445688999999999997653 222333333332 235789999999999854321 112223344567788999
Q ss_pred ecCCccchHHHHhh
Q 023887 143 SVESKLGLDSLLQR 156 (276)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (276)
|+.++.+++++-..
T Consensus 148 Sak~~~gi~e~f~~ 161 (174)
T d2bmea1 148 SALTGENVEEAFVQ 161 (174)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCcCHHHHHHH
Confidence 99999998887543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.002 Score=50.94 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=50.3
Q ss_pred hccccEEEEEEEcCCCC-CCHHH---HHHHHHHHH---hcCCCEEEEEeCCCCCCHHHH-HHHHHHhhhcCceeEEEecC
Q 023887 74 VANVDHLLLLFSMDQPK-LEPFA---LTRFLVEAE---STGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~-~~~~~---l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~ 145 (276)
+.++|.++.+++..... ..... .......+. ..++|.++|+||+|+.+.... +.+...+ ..+++++.+|+.
T Consensus 77 ~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~v~~iSA~ 155 (185)
T d1lnza2 77 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL-TDDYPVFPISAV 155 (185)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC-CSCCCBCCCSSC
T ss_pred HHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh-ccCCcEEEEECC
Confidence 56788888888765432 22221 111111111 136789999999999876533 2222222 235678889999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.++++|...+
T Consensus 156 ~g~Gi~~L~~~i 167 (185)
T d1lnza2 156 TREGLRELLFEV 167 (185)
T ss_dssp CSSTTHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 998888876553
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0018 Score=50.94 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=54.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHH--HHHhcCCCEEEEEeCCCCCCHHHHH--------------HHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV--EAESTGIPLTLALNKVELVDEEVLN--------------TWKSR 131 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~--~a~~~~~~~~ivlnK~Dl~~~~~~~--------------~~~~~ 131 (276)
.+.+....++|.+++|+|+..|.........++. .....+.|++||.||+|+.+..... +....
T Consensus 65 ~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~ 144 (177)
T d1kmqa_ 65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 144 (177)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred ccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHH
Confidence 3344467899999999999765422222222222 2223578999999999997543211 11222
Q ss_pred hhhcC-ceeEEEecCCccchHHHHhh
Q 023887 132 LHTWG-YEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 132 ~~~~~-~~~~~~s~~~~~~l~~l~~~ 156 (276)
.++++ .+.+.+|+.++.+++++-..
T Consensus 145 a~~~~~~~~~E~SAkt~~gi~e~F~~ 170 (177)
T d1kmqa_ 145 ANRIGAFGYMECSAKTKDGVREVFEM 170 (177)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred HHHcCCcEEEEecCCCCcCHHHHHHH
Confidence 23444 36678899999998886543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.69 E-value=0.00036 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++++|.||||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.67 E-value=0.00043 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|+|+|||||||+-+.|+.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999999984
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0011 Score=51.71 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=56.0
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHH---HHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~---a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
.+....++|.+++|+|+..|.. ...+..++.. ......++++|.||+|+.++. ..++.....++.+++.+.+|+
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~S-f~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sa 147 (167)
T d1z08a1 69 GPIYYRDSNGAILVYDITDEDS-FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 147 (167)
T ss_dssp -CCSSTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred chhhccCCceeEEEEeCCchhH-HHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEec
Confidence 3446789999999999976532 2233333322 224566788889999985431 112223344566788899999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++++-..
T Consensus 148 k~~~~v~e~F~~ 159 (167)
T d1z08a1 148 KQNKGIEELFLD 159 (167)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 999998887544
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0012 Score=51.62 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=56.1
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
.....++|.+++|+++.++. +...+..++... .....|.+++.||+|+.+.. ..+......++.+.+.+.+|+.
T Consensus 71 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak 149 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 149 (166)
T ss_dssp HHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCCcEEEEEeccCchH-HHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCC
Confidence 34678999999999997652 222333333333 33456788888999985432 1122334455667888999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 150 tg~~v~e~f~~ 160 (166)
T d1z0fa1 150 TGENVEDAFLE 160 (166)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99998887544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.00037 Score=56.46 Aligned_cols=20 Identities=50% Similarity=0.833 Sum_probs=18.3
Q ss_pred EEEEecCCCChhHHHHHHcC
Q 023887 162 TVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g 181 (276)
++|+||||||||||++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0019 Score=51.45 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=52.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHH--HHhcCCCEEEEEeCCCCCCHHHHH--------------HHHHHhhh
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVE--AESTGIPLTLALNKVELVDEEVLN--------------TWKSRLHT 134 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~--a~~~~~~~~ivlnK~Dl~~~~~~~--------------~~~~~~~~ 134 (276)
.....++|.+++|+|+..|.........++.. ....+.|.++|.||+||.++.... +..+..++
T Consensus 75 ~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~ 154 (185)
T d2atxa1 75 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 154 (185)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred hhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHH
Confidence 34577899999999998764322222222222 234578999999999997643211 11122233
Q ss_pred cC-ceeEEEecCCccchHHHHh
Q 023887 135 WG-YEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 135 ~~-~~~~~~s~~~~~~l~~l~~ 155 (276)
++ ...+.+|+.++.+++++-.
T Consensus 155 ~~~~~~~E~SAk~~~gv~e~F~ 176 (185)
T d2atxa1 155 IGACCYVECSALTQKGLKTVFD 176 (185)
T ss_dssp HTCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEecCCCCcCHHHHHH
Confidence 44 3567789999988887644
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.62 E-value=0.0011 Score=51.61 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=53.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHH---HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeEEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPF---ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLFC 142 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~---~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~ 142 (276)
.....++|.+++|+++..+..-.. .+.+++......++|+++|.||.|+.+........+.+ ...++.++.+
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~ 144 (164)
T d1zd9a1 65 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSI 144 (164)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred cccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345789999999999876532111 22223322234578999999999996432222222222 2234567889
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++-.++
T Consensus 145 Sa~~g~gv~e~~~~l 159 (164)
T d1zd9a1 145 SCKEKDNIDITLQWL 159 (164)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCcCCcCHHHHHHHH
Confidence 999998888765543
|
| >d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Translation initiation factor-1a, eIF1a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.002 Score=50.33 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=46.8
Q ss_pred eEEEecCCCC-ceeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccc
Q 023887 3 VIVQQSEPSR-TSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65 (276)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R 65 (276)
++|++.-.+. ++|.-. +|.+..|.+||+|++ +..+..||||.++..+|....+-|..++.+
T Consensus 35 a~V~k~lG~~~~~V~~~-dg~~rl~~irgk~r~-r~~i~~Gd~VlV~~rd~e~~K~DIl~~Y~~ 96 (143)
T d1d7qa_ 35 AQVIKMLGNGRLEAMCF-DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEECSSSEEEEEET-TTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEcCCCEEEEEEC-CCCEEEEEecCccee-EEEEeCCCEEEEeccCCcCcEEEEEEECCH
Confidence 5777774433 466444 689999999999984 678999999999998887766666666554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=96.59 E-value=0.0011 Score=54.41 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=37.4
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCE-EEEEeCCCCCCH
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPL-TLALNKVELVDE 122 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~-~ivlnK~Dl~~~ 122 (276)
..++.+|.+++|+|+... ... +-.+.+..|...|+|. ++++||+|+.+.
T Consensus 86 ~~~~~aD~avlVvda~~G-v~~-qt~~~~~~~~~~gi~~iiv~iNK~D~~~~ 135 (204)
T d2c78a3 86 TGAAQMDGAILVVSAADG-PMP-QTREHILLARQVGVPYIVVFMNKVDMVDD 135 (204)
T ss_dssp HHHTTCSSEEEEEETTTC-CCH-HHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred HHHHHCCEEEEEEECCCC-CcH-HHHHHHHHHHHcCCCeEEEEEEecccCCC
Confidence 368999999999999754 333 4456677788889875 566999999764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.59 E-value=0.00048 Score=54.27 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|.+|||||||+|.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Archaeal initiation factor-1a, aIF1a species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.56 E-value=0.00089 Score=49.49 Aligned_cols=60 Identities=20% Similarity=0.096 Sum_probs=45.2
Q ss_pred eEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccC-CeeEEeeecc
Q 023887 3 VIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD-RRGMIENVFQ 64 (276)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~-~~~~i~~i~~ 64 (276)
++|++.-.+.. +|.-. +|.++.|.+||+|++ +..+.+||+|.++..+|+. ..+-|..++.
T Consensus 24 ~~V~k~lG~~~~~V~c~-dg~~rl~~irGK~Rk-~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T d1jt8a_ 24 GIIEQMLGASRVRVRCL-DGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp EEEECSSCSSEEEEEEE-TTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred EEEEEEcCCCEEEEEEC-CCCEEEEEEcCCcce-eeEecCCCEEEEEeeecCCCcEEEEEEECC
Confidence 67888755554 77433 699999999999985 5789999999999988763 4565555544
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00052 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00068 Score=52.99 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=54.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|+..+.. ...+.++.... ...+.|+++|.||+|+.+.. ..+........++.+.+.+|+.
T Consensus 70 ~~~~~a~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak 148 (167)
T d1kaoa_ 70 LYIKNGQGFILVYSLVNQQS-FQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHH-HHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhhcccceeeeeeecchhh-hhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCC
Confidence 35689999999999976532 22333333222 22467899999999985431 1112223334567788899999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 149 ~g~~i~e~f~~ 159 (167)
T d1kaoa_ 149 SKTMVDELFAE 159 (167)
T ss_dssp CHHHHHHHHHH
T ss_pred CCcCHHHHHHH
Confidence 99988876544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.54 E-value=0.00045 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|+|||||||+-+.|+...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0009 Score=52.53 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=53.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+....++|.+++|+++..+. +...+.++.... ...+.|+++|.||+|+.+.. ..+.........+.+.+.+|+.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAk 150 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 150 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHhccceEEEeeecccch-hhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccC
Confidence 34568999999999987652 222233333322 23456888899999986432 1122223344557788899999
Q ss_pred CccchHHHHh
Q 023887 146 SKLGLDSLLQ 155 (276)
Q Consensus 146 ~~~~l~~l~~ 155 (276)
++.+++++-.
T Consensus 151 tg~gV~e~f~ 160 (171)
T d2ew1a1 151 ESDNVEKLFL 160 (171)
T ss_dssp TCTTHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999888743
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.51 E-value=0.00052 Score=60.76 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|.|+||||||||++.|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 45799999999999999999885
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.50 E-value=0.0037 Score=52.16 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=26.1
Q ss_pred cEEEecCCCCCCCCChhhHHHH-HHHHHHHhhcc--eEEEeee
Q 023887 235 GYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~~--ii~~~H~ 274 (276)
+.++||+|- +-+..+...+ ...+..|.+.+ .+++||+
T Consensus 117 LvliDE~~~---gT~~~eg~ala~aile~L~~~~~~~i~tTH~ 156 (224)
T d1ewqa2 117 LVLLDEVGR---GTSSLDGVAIATAVAEALHERRAYTLFATHY 156 (224)
T ss_dssp EEEEESTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred EEeeccccc---CcchhhhcchHHHHHHHHhhcCcceEEeeec
Confidence 479999999 7766554444 34556666655 8999996
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.00062 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|+|||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.00062 Score=54.43 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|.+|||||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999876
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.49 E-value=0.0027 Score=49.76 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=54.0
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~~~ 141 (276)
+....++|.+++|+|+..+. +...+..++... ...++|+++|.||+|+.+.......... +...++.++.
T Consensus 74 ~~~~~~~~~ii~v~D~s~~~-~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e 152 (173)
T d1e0sa_ 74 RHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 152 (173)
T ss_dssp GGGTTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HhhhcccceEEEEEecccch-hHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999999987543 222333333222 2346899999999999653222222222 1222445778
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++-.++
T Consensus 153 ~SA~tg~gv~e~~~~l 168 (173)
T d1e0sa_ 153 SCATSGDGLYEGLTWL 168 (173)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred eeCCCCcCHHHHHHHH
Confidence 8999999988866554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.48 E-value=0.00072 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++.|+|+|||||||+-+.|+...
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999998644
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.0012 Score=51.72 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=55.5
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHH---HHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~---~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+....++|.+++|+|...+.. ...+..+.. .....+.|+++|.||+|+.++. ..+.........+++.+.+|+.
T Consensus 73 ~~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk 151 (170)
T d1r2qa_ 73 PMYYRGAQAAIVVYDITNEES-FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHH-HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhhCcceEEEEeccchhhH-HHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCC
Confidence 345789999999999875432 222333322 2224567889999999985431 1122223345567888999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++++-..+
T Consensus 152 ~g~~V~e~f~~l 163 (170)
T d1r2qa_ 152 TSMNVNEIFMAI 163 (170)
T ss_dssp TCTTHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999888876543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00064 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998763
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=96.46 E-value=0.00068 Score=56.71 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|+.++|||||+++|+.
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999964
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.0021 Score=50.40 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=55.2
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+....++|.+++|+|+..|.. ...+.+++..+. ..++|+++|.||+|+.... ..+......+..+.+.+.+|+.
T Consensus 70 ~~~~~~~d~~ilv~d~~~~~s-f~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~ 148 (173)
T d2a5ja1 70 RSYYRGAAGALLVYDITRRET-FNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 148 (173)
T ss_dssp HHHHTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHhhccCEEEEEEeecChHH-HHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCC
Confidence 346789999999999987632 223444433332 3467889999999974321 1111223334567788999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 149 tg~~V~e~f~~ 159 (173)
T d2a5ja1 149 TACNVEEAFIN 159 (173)
T ss_dssp TCTTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99998876543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.001 Score=52.41 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.7
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcC
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++..|...+ +|+.+.|.|+||+|||||...++.
T Consensus 8 G~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 8 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444454444 789999999999999999877664
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.46 E-value=0.0024 Score=50.57 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=55.0
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----H---hcCCCEEEEEeCCCCCCHHHH-HHHHHHh-hhcCc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----E---STGIPLTLALNKVELVDEEVL-NTWKSRL-HTWGY 137 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~---~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~-~~~~~ 137 (276)
....+....++|.++++++...+.. ...+.+++... . ..+.|.++|.||+||.+.... +...... ...++
T Consensus 65 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (184)
T d1vg8a_ 65 QSLGVAFYRGADCCVLVFDVTAPNT-FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI 143 (184)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSC
T ss_pred cccccccccCccEEEEeecccchhh-hhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCC
Confidence 3344557889999999999865422 11233332211 1 235799999999998654211 1112222 23466
Q ss_pred eeEEEecCCccchHHHHhh
Q 023887 138 EPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~ 156 (276)
+.+.+|+.++.+++++-..
T Consensus 144 ~~~e~Sak~~~gI~e~f~~ 162 (184)
T d1vg8a_ 144 PYFETSAKEAINVEQAFQT 162 (184)
T ss_dssp CEEECBTTTTBSHHHHHHH
T ss_pred eEEEEcCCCCcCHHHHHHH
Confidence 7888999999988887554
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.43 E-value=0.0025 Score=51.10 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=56.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHH---HHHHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+......++|.+++|+|+..+... ..+.++ +......+.|+++|.||+|+.+.. ..+.........+...+.+|
T Consensus 71 ~~~~~~~~a~~~i~v~d~t~~~s~-~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (194)
T d2bcgy1 71 ITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 149 (194)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHhccCCEEEEEEeCcchhhh-hhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEe
Confidence 344567899999999998765322 222222 222334567899999999997632 11222233455677888999
Q ss_pred cCCccchHHHHhh
Q 023887 144 VESKLGLDSLLQR 156 (276)
Q Consensus 144 ~~~~~~l~~l~~~ 156 (276)
+.++.+++++-..
T Consensus 150 Ak~g~gi~e~f~~ 162 (194)
T d2bcgy1 150 ALDSTNVEDAFLT 162 (194)
T ss_dssp TTTCTTHHHHHHH
T ss_pred cCcCccHHHHHHH
Confidence 9999988876543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.42 E-value=0.00061 Score=58.23 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=31.3
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|+|-. ++++.....+.+.+.++.+.. +|++||..
T Consensus 245 ~~iDEpe~---~Lhp~~~~~l~~~l~~~~~~~QviitTHsp 282 (308)
T d1e69a_ 245 YVLDEVDS---PLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (308)
T ss_dssp EEEESCCS---SCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred hhhhhccc---cCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 68899998 888888888899998887654 99999974
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.00012 Score=57.57 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.7
Q ss_pred CEEEEEecCCCChhHHHHHHc
Q 023887 160 QTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.+++|+|+||+||||||.+|.
T Consensus 25 ~~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 25 LVTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHHSCCSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467888999999999999985
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.37 E-value=0.00081 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|+|||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998644
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.008 Score=46.49 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=54.3
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH----HHHHhhhcC--ceeEEEecCCc
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTWG--YEPLFCSVESK 147 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~----~~~~~~~~~--~~~~~~s~~~~ 147 (276)
+..++.++.+.+...+. . .....++......+.+.++++||+|+.+...... +.+.+..++ .+++.+|+.++
T Consensus 96 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g 173 (188)
T d1puia_ 96 RQSLQGLVVLMDIRHPL-K-DLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 173 (188)
T ss_dssp CTTEEEEEEEEETTSCC-C-HHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred hhheeEEEEeecccccc-h-hHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 45566666666665432 2 2334455555667889999999999988754432 233333333 36889999999
Q ss_pred cchHHHHhhc
Q 023887 148 LGLDSLLQRL 157 (276)
Q Consensus 148 ~~l~~l~~~l 157 (276)
.+++.|...+
T Consensus 174 ~Gid~L~~~i 183 (188)
T d1puia_ 174 QGVDKLRQKL 183 (188)
T ss_dssp BSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999988764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.33 E-value=0.0007 Score=53.39 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.+.|+|++||||||+-+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999997543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.002 Score=50.65 Aligned_cols=85 Identities=11% Similarity=0.156 Sum_probs=52.7
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHH---HHHHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
...+..+|.+++|+|+..|. +...+.++ +......+.|+++|.||.|+.+.. ..+.........+.+.+.+|+.
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (173)
T d2fu5c1 73 TAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 151 (173)
T ss_dssp CTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred HHhccCCCEEEEEEECCChh-hHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCC
Confidence 34578999999999997653 22334443 323335567899999999997531 1122234445678888999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
.+.+++++-..
T Consensus 152 ~g~gv~e~f~~ 162 (173)
T d2fu5c1 152 ANINVENAFFT 162 (173)
T ss_dssp --CCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 98888876554
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.30 E-value=0.001 Score=53.02 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
...+.++|.|||||||+.+.|+.
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.30 E-value=0.00075 Score=53.98 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|++||||||+.+.|+...
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999997644
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.30 E-value=0.00082 Score=52.68 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHcCCC
Q 023887 162 TVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|+|++||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999997654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0024 Score=50.57 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=54.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|+..+. +...+.+++.... ..+.|+++|.||+|+.+... .+...+...+++++.+.+|+.
T Consensus 83 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak 161 (186)
T d2f7sa1 83 AFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 161 (186)
T ss_dssp HHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCEEEEEEeccccc-cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999999986542 2234444442211 23456788999999954311 112234445677888999999
Q ss_pred CccchHHHHhh
Q 023887 146 SKLGLDSLLQR 156 (276)
Q Consensus 146 ~~~~l~~l~~~ 156 (276)
++.+++++-..
T Consensus 162 ~~~~i~e~f~~ 172 (186)
T d2f7sa1 162 TGQNVEKAVET 172 (186)
T ss_dssp TTBTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99988876654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.00095 Score=53.17 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G 200 (276)
+++++|.+|||||||++.+.-.. .+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~----------~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIH----------GQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----------SCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----------CCCCeee
Confidence 68999999999999999994322 3567776
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=96.25 E-value=0.01 Score=49.20 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=48.6
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCCH--HHHH----HHHHHhhhcCce-----eE
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDE--EVLN----TWKSRLHTWGYE-----PL 140 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~~--~~~~----~~~~~~~~~~~~-----~~ 140 (276)
.++-+|.+++|+++... ..+. -.+.+..+...|++ +++++||+|+.+. +... .+...+.++++. .+
T Consensus 109 g~~~aD~ailVvda~~G-~~~Q-t~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~I 186 (222)
T d1zunb3 109 GASTCDLAIILVDARYG-VQTQ-TRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV 186 (222)
T ss_dssp HHTTCSEEEEEEETTTC-SCHH-HHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred ccccCceEEEEeccccC-cccc-hHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEE
Confidence 57899999999999753 4443 34456677888965 7888999999862 2222 223334455552 24
Q ss_pred EEecCCccch
Q 023887 141 FCSVESKLGL 150 (276)
Q Consensus 141 ~~s~~~~~~l 150 (276)
.+|+.++.++
T Consensus 187 PiSA~~G~ni 196 (222)
T d1zunb3 187 PMSALKGDNV 196 (222)
T ss_dssp ECCTTTCTTT
T ss_pred EEEcccCccC
Confidence 5566555444
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.0011 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.+|||||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988763
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.007 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.6
Q ss_pred CCEEEEEecCCCChhHHHHHH
Q 023887 159 DQTTVIVGPSGVGKSSLINAL 179 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L 179 (276)
++...|.|||.+||||+|+.+
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHH
Confidence 467889999999999999875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0049 Score=48.17 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=53.3
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHH----HHHH---hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhc-CceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAE---STGIPLTLALNKVELVDEEV-LNTWKSRLHTW-GYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l----~~a~---~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~-~~~~~~ 141 (276)
.....++|.+++++|...+. +...+..++ .... ..+.|+++|.||+|+.+.+. .++......+. .++.+.
T Consensus 73 ~~~~~~~~~~i~~~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e 151 (174)
T d1wmsa_ 73 TPFYRGSDCCLLTFSVDDSQ-SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE 151 (174)
T ss_dssp GGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred hhhhhccceEEEEEeeeccc-ccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEE
Confidence 34678999999999987652 222233332 2211 23578999999999965321 11122233333 357788
Q ss_pred EecCCccchHHHHhh
Q 023887 142 CSVESKLGLDSLLQR 156 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~ 156 (276)
+|+.++.+++++-..
T Consensus 152 ~Sak~~~gI~e~f~~ 166 (174)
T d1wmsa_ 152 TSAKDATNVAAAFEE 166 (174)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred EcCCCCcCHHHHHHH
Confidence 999999998887543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.001 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++||.|++|||||||-+.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988553
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.0011 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999998763
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.0011 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.+++|+|+|||||||+-..|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0012 Score=52.11 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|+|||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0013 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|+.++|-|..||||||+++.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999874
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.003 Score=54.29 Aligned_cols=33 Identities=36% Similarity=0.620 Sum_probs=24.6
Q ss_pred hHHHHhhc---cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 150 LDSLLQRL---RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 150 l~~l~~~l---~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.+...+ ....+.+||+||||||+++..|+..
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 44444433 3356899999999999999999863
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0029 Score=50.10 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=51.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHH-HHHH--HHhcCCCEEEEEeCCCCCCHHHH-H-------------HHHHHhhh
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTR-FLVE--AESTGIPLTLALNKVELVDEEVL-N-------------TWKSRLHT 134 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r-~l~~--a~~~~~~~~ivlnK~Dl~~~~~~-~-------------~~~~~~~~ 134 (276)
....++|.+++|+|+..+... ..+.. ++.. ....+.|++||.||+|+.++... + ......++
T Consensus 72 ~~~~~~~~~ilv~d~~~~~sf-~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 150 (183)
T d1mh1a_ 72 LSYPQTDVSLICFSLVSPASF-ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (183)
T ss_dssp GGCTTCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hcccccceeeeeeccchHHHH-HHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHH
Confidence 456899999999999765322 12221 2222 23457899999999998654321 1 11112233
Q ss_pred cC-ceeEEEecCCccchHHHHh
Q 023887 135 WG-YEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 135 ~~-~~~~~~s~~~~~~l~~l~~ 155 (276)
++ ...+.+|+.++.+++++-.
T Consensus 151 ~~~~~~~E~SAk~~~~V~e~F~ 172 (183)
T d1mh1a_ 151 IGAVKYLECSALTQRGLKTVFD 172 (183)
T ss_dssp TTCSEEEECCTTTCTTHHHHHH
T ss_pred cCCceEEEcCCCCCcCHHHHHH
Confidence 44 4677889999888887644
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.16 E-value=0.001 Score=53.16 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++|-|..||||||+++.|....
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998755
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.14 E-value=0.00089 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+.+.|.||||+|||||.++|++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0026 Score=49.55 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=53.4
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhh-cCceeEEEec
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV--LNTWKSRLHT-WGYEPLFCSV 144 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~s~ 144 (276)
....++|.+++|+|+..|. +...+..++... ...+.|.++|.||+|+..... .+.......+ .+++.+.+|+
T Consensus 70 ~~~~~~~~~ilv~d~~~~~-sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (167)
T d1c1ya_ 70 LYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred ccccccceeEEeeeccchh-hhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence 3578999999999997652 222344333322 234678999999999964311 1111122233 3567888999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++++-..
T Consensus 149 k~g~gv~e~F~~ 160 (167)
T d1c1ya_ 149 KSKINVNEIFYD 160 (167)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 999998886543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.001 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++.++|-|+.||||||+++.|....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0013 Score=52.40 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=20.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+++|+|+|||||||.-+.|+..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0023 Score=51.93 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=25.9
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcC
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++..|...+ +|+.+.|.|+||+|||||...++-
T Consensus 19 Gi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 19 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445555544 789999999999999999977654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.03 E-value=0.002 Score=52.84 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=25.4
Q ss_pred cchHHHHhhc---cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 148 LGLDSLLQRL---RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 148 ~~l~~l~~~l---~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++.|...+ +-..+.|.||+|+||||++++|+..
T Consensus 31 ~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 31 HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3444444444 2235889999999999999999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.01 E-value=0.0016 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++|+|+|||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.01 E-value=0.0023 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+..++|.|++|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0021 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+.|.||||+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999865
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.00 E-value=0.0017 Score=57.22 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++.+.+.|++|+|||||+|+|++..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEeeccccchHHHHHHhhhc
Confidence 46679999999999999999999855
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0016 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+++|+|++||||||+.+.|+-.
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0018 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|-|+.||||||+++.|..
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998888765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=95.99 E-value=0.013 Score=47.50 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=34.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCCH
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDE 122 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~~ 122 (276)
.+..+|.+++|+|+... ... +=.+.+..|...+++ +++++||+|+.++
T Consensus 86 ~~~~aD~allVVda~~G-~~~-QT~~~~~~a~~~~~~~iIv~iNK~D~~~~ 134 (196)
T d1d2ea3 86 GTAPLDGCILVVAANDG-PMP-QTREHLLLARQIGVEHVVVYVNKADAVQD 134 (196)
T ss_dssp TSSCCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCCEEEEEECGGGCSC
T ss_pred HHhhcCeEEEEEEcCCC-Cch-hHHHHHHHHHHhcCCcEEEEEeccccccc
Confidence 57889999999999753 333 334556666776764 5667999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.96 E-value=0.0018 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++|+|+|||||||+-..|+-..
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0017 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=19.6
Q ss_pred CCEEEEEecCCCChhHHHHHHc
Q 023887 159 DQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
+...+|+|+||+||||+|.+|.
T Consensus 25 ~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5578999999999999999973
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0064 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+.|.||+|+||||++++++..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0084 Score=47.63 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=52.9
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHH-HHH--HHHhcCCCEEEEEeCCCCCCHHHHH--------------HHH
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTR-FLV--EAESTGIPLTLALNKVELVDEEVLN--------------TWK 129 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r-~l~--~a~~~~~~~~ivlnK~Dl~~~~~~~--------------~~~ 129 (276)
..+.+....++|.+++|+|+..+.. ...+.. ++. .....+.|.++|.||+||.+..... ...
T Consensus 65 ~~~~~~~~~~~~~~ilv~d~~~~~S-f~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T d2ngra_ 65 DRLRPLSYPQTDVFLVCFSVVSPSS-FENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAE 143 (191)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhhhhcccccceeecccccchHHH-HHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHH
Confidence 3444456779999999999987642 222322 222 1223578999999999986432110 001
Q ss_pred HHhhhc-CceeEEEecCCccchHHHHh
Q 023887 130 SRLHTW-GYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 130 ~~~~~~-~~~~~~~s~~~~~~l~~l~~ 155 (276)
....++ +...+.+|+.++.+++++-.
T Consensus 144 ~~~~~~~~~~~~e~SAk~~~~V~e~f~ 170 (191)
T d2ngra_ 144 KLARDLKAVKYVECSALTQKGLKNVFD 170 (191)
T ss_dssp HHHHHTTCSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHcCCCeEEEEeCCCCcCHHHHHH
Confidence 112232 34667789888888887644
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.006 Score=47.45 Aligned_cols=86 Identities=20% Similarity=0.239 Sum_probs=55.8
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHH---HHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLV---EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~---~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~ 145 (276)
.....++|.+++|+|+..+. +...+..+.. .......|+++|.||.|+.+... .+.........+++.+.+|+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak 152 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 152 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhcCCceeEEEecCCccc-chhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCC
Confidence 34567999999999987653 2223333322 22234678888999999876411 122223345567889999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++++-..+
T Consensus 153 ~g~gi~e~f~~l 164 (170)
T d2g6ba1 153 TGLNVDLAFTAI 164 (170)
T ss_dssp TCTTHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 999988875543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.89 E-value=0.0018 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|.++-|.|.||||||||-+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999863
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.86 E-value=0.0014 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+.|.||||+||||+.+++++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.85 E-value=0.0068 Score=46.90 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=52.7
Q ss_pred hhccccEEEEEEEcCCCCCCHHH---HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFA---LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~---l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~s~ 144 (276)
.....+.++++++.......... ...+.......+.|+++|.||+|+............+ ..-+.+++.+|+
T Consensus 79 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 158 (177)
T d1zj6a1 79 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 158 (177)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred hhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeC
Confidence 56788999999998754332221 1122222234678999999999986443222222222 112346888999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++-.++
T Consensus 159 ~tg~Gi~e~~~~L 171 (177)
T d1zj6a1 159 LTGEGLCQGLEWM 171 (177)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999999876553
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.003 Score=51.58 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=26.9
Q ss_pred ccchHHHHhhccC---CEEEEEecCCCChhHHHHHHcCC
Q 023887 147 KLGLDSLLQRLRD---QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 147 ~~~l~~l~~~l~g---~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++.|...+++ ..+.|.||+|+||||++++++..
T Consensus 18 ~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 18 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence 4456666666522 23789999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.0023 Score=50.99 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.7
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|.|.+||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.79 E-value=0.0024 Score=55.64 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=23.1
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+.+.+.|+||||||||+|.++|+...
T Consensus 47 ~~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 47 VTPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHhhcc
Confidence 356778899999999999999998753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0055 Score=47.75 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=51.5
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHH---HHH-HHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVE-AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~-a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
...++|.+++|+|+..|. +...+.++ ... ....+.|+++|.||+||.++. ..+.......+++++.+.+|+..
T Consensus 69 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Sakt 147 (168)
T d2atva1 69 HMRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT 147 (168)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred hhcccccceeecccCCcc-chhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEcccc
Confidence 467899999999997652 22223332 212 234578999999999985421 11222333456678888899887
Q ss_pred ccc-hHHHHh
Q 023887 147 KLG-LDSLLQ 155 (276)
Q Consensus 147 ~~~-l~~l~~ 155 (276)
+.+ ++++-.
T Consensus 148 g~gnV~e~F~ 157 (168)
T d2atva1 148 GEGNITEIFY 157 (168)
T ss_dssp CTTCHHHHHH
T ss_pred CCcCHHHHHH
Confidence 764 665543
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.76 E-value=0.0023 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++++|..|||||||++.+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0082 Score=46.37 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=56.9
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHH---HHHHHHhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEec
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTR---FLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r---~l~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~ 144 (276)
+......++|.+++|+|+..|.. ...+.. ..........+++++.||.|+.+... .+...+.....+++.+.+|+
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T d1g16a_ 67 ITTAYYRGAMGIILVYDITDERT-FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 145 (166)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred HHHHHHhcCCEEEEEEECCCccC-HHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECC
Confidence 33446789999999999987632 122332 23222344567888999999865421 12223334556788999999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++++-..
T Consensus 146 ~~~~~v~e~f~~ 157 (166)
T d1g16a_ 146 KNDDNVNEIFFT 157 (166)
T ss_dssp TTTBSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999998887554
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.022 Score=43.96 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=53.1
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH-HHHH-HHHHhhhcCc-eeEEEecCCccc
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE-VLNT-WKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~-~~~~-~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
..+.+|.++++.+...... ..+.+.........|.++|+||+|..... .... .......+++ +++.+|+.++.+
T Consensus 82 ~~~~~~~~l~~~d~~~~~~---~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRWTP---DDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp CCCCEEEEEEEEETTCCCH---HHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred chhhcceeEEEEecCccch---hHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence 4567888888888764322 22223333356778999999999987653 2222 2223344554 788999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++.|...+
T Consensus 159 i~~L~~~i 166 (179)
T d1egaa1 159 VDTIAAIV 166 (179)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0029 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+.++|-|..||||||+++.|...+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999999987543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.68 E-value=0.0025 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.5
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++++|.+|||||||++.+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0028 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||++.+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999753
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.62 E-value=0.0031 Score=52.16 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=20.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++++++|+|++||||||.+=-|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999866654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.009 Score=46.78 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=58.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+....++|.+++|+++..+. +...+.+++.... ....+++++.||.|..+.+. .....+..+..++..+.+
T Consensus 71 ~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~ 149 (177)
T d1x3sa1 71 TLTPSYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEA 149 (177)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCcc-ccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEE
Confidence 33445688999999999987542 2223444444332 33467789999999865432 122334456678889999
Q ss_pred ecCCccchHHHHhh
Q 023887 143 SVESKLGLDSLLQR 156 (276)
Q Consensus 143 s~~~~~~l~~l~~~ 156 (276)
|+..+.+++++-..
T Consensus 150 Sa~tg~gv~e~f~~ 163 (177)
T d1x3sa1 150 SAKTCDGVQCAFEE 163 (177)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 99999998887654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.0027 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+.|.||||+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhcc
Confidence 47899999999999999998754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.005 Score=47.88 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=56.4
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH-----HHHHHHHHhhhcCceeEE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE-----VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~-----~~~~~~~~~~~~~~~~~~ 141 (276)
.+....++|.+++|+|+..|... ..+..+.... .....+.++|.||+|+.++. ..+...+..++.+++.+.
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e 147 (170)
T d1ek0a_ 69 APMYYRNAQAALVVYDVTKPQSF-IKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhccceEEEEEeCCcccch-hhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEE
Confidence 33468899999999999765322 2333333222 23456889999999985321 111222344556788899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++-..+
T Consensus 148 ~Sak~g~gV~e~F~~i 163 (170)
T d1ek0a_ 148 TSAKTGENVNDVFLGI 163 (170)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHH
Confidence 9999999988875543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.004 Score=55.26 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHc
Q 023887 161 TTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++|+|+.++|||||+.+|+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 49999999999999999996
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.45 E-value=0.0044 Score=49.86 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=23.3
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHH
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINA 178 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~ 178 (276)
++..|...+ +|+.+.|.|+||+|||+|.-.
T Consensus 11 Gi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 11 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 445555443 789999999999999999743
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.42 E-value=0.0038 Score=52.45 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=23.9
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++.+..=+ +|+.++|.|+||+|||||+..|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455443212 89999999999999999976654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.42 E-value=0.0049 Score=49.73 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=25.1
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHc
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++..|...+ +|+.+.|.|+||+|||||...++
T Consensus 19 G~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 19 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455555543 68999999999999999987665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.38 E-value=0.004 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+.|.|++|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999853
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0042 Score=50.60 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=25.0
Q ss_pred cchHHHHhhc-cCC--EEEEEecCCCChhHHHHHHcCC
Q 023887 148 LGLDSLLQRL-RDQ--TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 148 ~~l~~l~~~l-~g~--~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++.|...+ .+. .+.|.||+|+||||++.+|+..
T Consensus 21 ~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 21 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHH
Confidence 3445555554 222 2779999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.33 E-value=0.0051 Score=50.27 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=25.5
Q ss_pred cchHHHHhhc-----cCCEEEEEecCCCChhHHHHHHc
Q 023887 148 LGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 148 ~~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++..|...+ +|..+.|.|+||+|||||.-.++
T Consensus 20 TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 20 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 3556666554 78899999999999999976543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.31 E-value=0.0064 Score=49.71 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=25.7
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcC
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++..|...+ +|..+.|.|+||+|||||...++-
T Consensus 11 G~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 11 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 455555554 789999999999999999866654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0044 Score=49.73 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|.|||||||||+-..|+...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78899999999999999998755
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.08 E-value=0.0058 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|-|||||||||+-..|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999999999999755
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.06 E-value=0.0066 Score=49.47 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=25.6
Q ss_pred ccchHHHHhhcc-C--CEEEEEecCCCChhHHHHHHcCC
Q 023887 147 KLGLDSLLQRLR-D--QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 147 ~~~l~~l~~~l~-g--~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++.|...++ + .-+.|.||+|+||||+.++|+..
T Consensus 21 ~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 21 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHH
Confidence 344555655552 2 13778999999999999988764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.05 E-value=0.015 Score=43.77 Aligned_cols=86 Identities=20% Similarity=0.110 Sum_probs=54.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHH---HHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH-----HhhhcCceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALT---RFLVEAESTGIPLTLALNKVELVDEEVLNTWKS-----RLHTWGYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~---r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~s 143 (276)
....++|.++++++...+........ +.+........|++++.||.|+.+.....+... .....++.++.+|
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC 142 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECB
T ss_pred hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeE
Confidence 35688999999999976543222211 222212234678889999999875432222211 1223456788899
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++-.++
T Consensus 143 Aktg~gi~e~~~~l 156 (160)
T d1r8sa_ 143 ATSGDGLYEGLDWL 156 (160)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999887664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=0.019 Score=45.11 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHH--HHHHhcCCCEEEEEeCCCCCCHHHH--------------HHHHHHhh
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFL--VEAESTGIPLTLALNKVELVDEEVL--------------NTWKSRLH 133 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l--~~a~~~~~~~~ivlnK~Dl~~~~~~--------------~~~~~~~~ 133 (276)
.+....++|.+++|+|+..+.......+.+. ......+.|+++|.||+|+.+.... +++....+
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~ 146 (179)
T d1m7ba_ 67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK 146 (179)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred ccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH
Confidence 3346789999999999976642111122222 2223467899999999998542111 11122223
Q ss_pred hcCc-eeEEEecCCcc-chHHHHh
Q 023887 134 TWGY-EPLFCSVESKL-GLDSLLQ 155 (276)
Q Consensus 134 ~~~~-~~~~~s~~~~~-~l~~l~~ 155 (276)
+.+. ..+.+|+.++. +++++-.
T Consensus 147 ~~~~~~y~E~SAk~~~n~i~~~F~ 170 (179)
T d1m7ba_ 147 QIGAATYIECSALQSENSVRDIFH 170 (179)
T ss_dssp HHTCSEEEECBTTTBHHHHHHHHH
T ss_pred HhCCCeEEEEeCCCCCcCHHHHHH
Confidence 3443 56678888775 4666543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.97 E-value=0.0058 Score=48.89 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.91 E-value=0.0032 Score=52.04 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.1
Q ss_pred EEEEecCCCChhHHHHHHcCC
Q 023887 162 TVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.|.|+||+||||++++++..
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 455699999999999999864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.88 E-value=0.14 Score=38.19 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=55.6
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCcee
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYEP 139 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~~ 139 (276)
...+.....++.++.+++...+.........+.... .....+++++.||.|+.+......+... .....+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 143 (169)
T d1upta_ 64 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI 143 (169)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEE
T ss_pred ccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEE
Confidence 333456788999999999875443333333332222 2345678899999999764322222222 12234578
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 144 ~~~SA~~g~gv~e~~~~l 161 (169)
T d1upta_ 144 FKTSATKGTGLDEAMEWL 161 (169)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 899999999998876654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.87 E-value=0.0064 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
++||.|.+||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.0065 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|+|++||||||.+--|+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999977764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0091 Score=48.54 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=26.5
Q ss_pred cchHHHHhhc-----cCCEEEEEecCCCChhHHHHHHc
Q 023887 148 LGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 148 ~~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++..|...+ +|..+.|.|+||+|||||.-.++
T Consensus 21 TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 21 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 3566666664 78899999999999999986664
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0068 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.4
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++|.|++||||||+-+.|..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcHHHHHHHH
Confidence 3899999999999999888764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.75 E-value=0.0069 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|+|++||||||.+=-|+-
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999866663
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.0031 Score=53.06 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEEEEecCCCChhHHHHHHc
Q 023887 161 TTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++++|+.++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999998885
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0073 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|.+||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.66 E-value=0.0068 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+.|.||||+|||+|.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 458899999999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0085 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+-+.|.||||+|||+|.++|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3568899999999999999999754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.013 Score=47.77 Aligned_cols=32 Identities=28% Similarity=0.617 Sum_probs=24.0
Q ss_pred hHHHHhhc---cCCEEEEEecCCCChhHHHHHHcC
Q 023887 150 LDSLLQRL---RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 150 l~~l~~~l---~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++.+...+ ....+.+||+||||||+++..|+.
T Consensus 31 i~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence 44444433 234689999999999999999886
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.42 E-value=0.052 Score=46.36 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=48.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEec
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~ 144 (276)
..++-+|.+++|+++... ... .-++....|+..++|.++++||+|....+-.+-+.+.-.+++..++.+.+
T Consensus 90 ~~l~~~D~avlVvda~~G-v~~-~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~~~ 160 (276)
T d2bv3a2 90 RSMRVLDGAIVVFDSSQG-VEP-QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQL 160 (276)
T ss_dssp HHHHHCCEEEEEEETTTS-SCH-HHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEE
T ss_pred HHHHhhhheEEeccccCC-cch-hHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEEEe
Confidence 468899999999998653 222 44556667788999999999999986543222222333456666655554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.40 E-value=0.0055 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=16.4
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++|.|.|||||||+.+.|..
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999998754
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.33 E-value=0.009 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.724 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-+.|.||||+|||+|.++|+...
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc
Confidence 458999999999999999999855
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.32 E-value=0.011 Score=47.66 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.3
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.|+-+.|.|+||+|||||.-.|...
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 36788999999999999999887753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.16 E-value=0.023 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.789 Sum_probs=18.7
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+.+||+||||||+|+..|+.
T Consensus 45 n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHH
Confidence 478999999999999988775
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.01 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-+.|.||||+|||+|+++++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 458899999999999999999855
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.013 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.8
Q ss_pred ccCCEEEEEecCCCChhHHHHHHc
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++|..+.|.|++|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 479999999999999999986554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.15 E-value=0.011 Score=47.46 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.6
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.|+-++|.|+||+|||||.-.|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3678899999999999999887665
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.012 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.++|=|.-||||||+++.|....
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999998644
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.89 E-value=0.013 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+-+.|.||||+|||+|.++|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 4568899999999999999999865
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.88 E-value=0.017 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...+.|.||+|+||||++.+++...
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhh
Confidence 56689999999999999999988743
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.015 Score=50.36 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=26.0
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHcC
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++.+...-+|++.+|+|++|+|||||+..+..
T Consensus 34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eeecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 44444334899999999999999999988875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.69 E-value=0.016 Score=46.12 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.1
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.|+-+.|.|+||+|||||.-.|..
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3688899999999999999866654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.015 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.|.|.-|||||||||.|+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5788899999999999999864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.24 Score=38.41 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=49.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHH---H---hcCCCEEEEEeCCCCCCH-------HHHHHHHHHhhhcCcee
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEA---E---STGIPLTLALNKVELVDE-------EVLNTWKSRLHTWGYEP 139 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~---~~~~~~~ivlnK~Dl~~~-------~~~~~~~~~~~~~~~~~ 139 (276)
...++|.+++|+|+..+. +...+..+.... + ....|+++|.||.|+... ++.+.+.. ...+++.
T Consensus 67 ~~~~ad~~ilVfd~~~~~-Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~--~~~~~~~ 143 (175)
T d2bmja1 67 FSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA--DMKRCSY 143 (175)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH--TSTTEEE
T ss_pred cccccceeEEEeecccch-hhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH--HhCCCeE
Confidence 456899999999997653 222344333222 2 234578889999887432 22222221 1235677
Q ss_pred EEEecCCccchHHHHh
Q 023887 140 LFCSVESKLGLDSLLQ 155 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~ 155 (276)
+.+|+.++.+++++-.
T Consensus 144 ~e~SAk~~~~v~~~F~ 159 (175)
T d2bmja1 144 YETCATYGLNVDRVFQ 159 (175)
T ss_dssp EEEBTTTTBTHHHHHH
T ss_pred EEeCCCCCcCHHHHHH
Confidence 8889999988877644
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.44 E-value=0.062 Score=45.61 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=37.3
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~ 120 (276)
.++..+|.+++|+|+... ... .-++.+..++..++|.++++||+|..
T Consensus 86 ~al~~~D~avlvvda~~G-v~~-~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 86 GALEAADAALVAVSAEAG-VQV-GTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHCSEEEEEEETTTC-SCH-HHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hhhcccCceEEEeeccCC-ccc-hhHHHHHhhhhccccccccccccccc
Confidence 368899999999999753 222 45566667788999999999999974
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.31 E-value=0.024 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+.|+||||||||.|.+.|+...
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 78899999999999999988643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.02 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.2
Q ss_pred CEEEEEecCCCChhHHHHHHc
Q 023887 160 QTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~ 180 (276)
-+++|.|++|||||||-+.|.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHH
Confidence 378999999999999987764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.25 E-value=0.021 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++..+.|.||||+||||+.++|++..
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998755
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.18 E-value=0.02 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.8
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
++++|.|..||||||..|.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999954
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.17 E-value=0.067 Score=42.96 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=47.8
Q ss_pred cccEEEEEEEcCCCCCCHHH-----HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----------------
Q 023887 76 NVDHLLLLFSMDQPKLEPFA-----LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH----------------- 133 (276)
Q Consensus 76 nvD~vl~v~~~~~p~~~~~~-----l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~----------------- 133 (276)
..+.++.+.++.. ...+.. +.+.. .....+.|.++|+||+|+.+.+....+.....
T Consensus 123 ~~~~~v~vvd~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (244)
T d1yrba1 123 PYPLVVYISDPEI-LKKPNDYCFVRFFALL-IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQG 200 (244)
T ss_dssp SSCEEEEEECGGG-CCSHHHHHHHHHHHHH-HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHH
T ss_pred cCceEEEEecccc-ccCchhHhhHHHHHHH-HHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5667778888742 233332 11211 22345789999999999998765433321110
Q ss_pred -----------h--cCceeEEEecCCccchHHHHhhc
Q 023887 134 -----------T--WGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 -----------~--~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
. ..++++.+|+.++.++++|...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l 237 (244)
T d1yrba1 201 LMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237 (244)
T ss_dssp HHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 0 12467788888888888876543
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.04 E-value=0.05 Score=45.27 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=35.6
Q ss_pred hhccccEEEEEEEcCCCCC----C-HHHHHHHHHHHHhcCCCE-EEEEeCCCCCC
Q 023887 73 PVANVDHLLLLFSMDQPKL----E-PFALTRFLVEAESTGIPL-TLALNKVELVD 121 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~----~-~~~l~r~l~~a~~~~~~~-~ivlnK~Dl~~ 121 (276)
.++.+|.+++|+++....+ . ..+-.+.+..|+..|++. ++++||+|+.+
T Consensus 104 g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~ 158 (239)
T d1f60a3 104 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK 158 (239)
T ss_dssp SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 5789999999999864211 1 124556677788889985 56799999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.01 E-value=0.029 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+++|.|+.|+|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999988764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.82 E-value=0.43 Score=34.85 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=51.7
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHHHHHHHHHhh------------h
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEVLNTWKSRLH------------T 134 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~------------~ 134 (276)
+....+++.++++++...+........ ..... ...+.|++++.||.|+.......++...+. .
T Consensus 62 ~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 140 (166)
T d2qtvb1 62 KDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ 140 (166)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSS
T ss_pred hhhhhheeeeeeeccccchhhhhhhhH-HHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhccc
Confidence 345678899999999876533222222 22222 235678999999999865321222222211 1
Q ss_pred cCceeEEEecCCccchHHHHhhc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
.+..++.+|+.++.+++++-.++
T Consensus 141 ~~~~~~~~SA~tg~Gv~e~~~~l 163 (166)
T d2qtvb1 141 RPVEVFMCSVVMRNGYLEAFQWL 163 (166)
T ss_dssp CCEEEEEEBTTTTBSHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHH
Confidence 12357888999999999877654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.82 E-value=0.022 Score=46.55 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=49.2
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-cccccCCCCceeeeEEEEecCCCcEEEec
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VSTKSGRGKHTTRHVSLLPLSGGGYLADT 240 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-vs~~~g~gk~tt~~~~~~~~~~~~~iiDt 240 (276)
+.|.|++|+|||-|++++..... ......+++....... ...... ................+++|.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dll~iDD 105 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK-----------KRGYRVIYSSADDFAQAMVEHLK--KGTINEFRNMYKSVDLLLLDD 105 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH-----------HTTCCEEEEEHHHHHHHHHHHHH--HTCHHHHHHHHHTCSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHhc-----------cCccceEEechHHHHHHHHHHHH--ccchhhHHHHHhhccchhhhh
Confidence 78999999999999999986431 1111111111111000 000000 000000000001235688888
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEee
Q 023887 241 PGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIH 273 (276)
Q Consensus 241 Pg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H 273 (276)
-..- .-.....+.+..++..+.+.+ +++++.
T Consensus 106 i~~i--~~~~~~~~~lf~lin~~~~~~~~iiits~ 138 (213)
T d1l8qa2 106 VQFL--SGKERTQIEFFHIFNTLYLLEKQIILASD 138 (213)
T ss_dssp GGGG--TTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hhhh--cCchHHHHHHHHHHHHHhhccceEEEecC
Confidence 7661 123445677889999988876 666654
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.78 E-value=0.054 Score=45.19 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=49.4
Q ss_pred hhccccEEEEEEEcCCCC----CCHH-HHHHHHHHHHhcCCC-EEEEEeCCCCCC----HHHHHHH----HHHhhhc-C-
Q 023887 73 PVANVDHLLLLFSMDQPK----LEPF-ALTRFLVEAESTGIP-LTLALNKVELVD----EEVLNTW----KSRLHTW-G- 136 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~----~~~~-~l~r~l~~a~~~~~~-~~ivlnK~Dl~~----~~~~~~~----~~~~~~~-~- 136 (276)
.++-+|.+++|+++.... +... +....+..+...+++ +++++||+|+.+ ++..+.+ ...+.++ +
T Consensus 122 g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~ 201 (245)
T d1r5ba3 122 GASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201 (245)
T ss_dssp -TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCc
Confidence 478899999999996421 1111 233445556667876 668889999863 2222222 2223333 2
Q ss_pred -----ceeEEEecCCccchHHHH
Q 023887 137 -----YEPLFCSVESKLGLDSLL 154 (276)
Q Consensus 137 -----~~~~~~s~~~~~~l~~l~ 154 (276)
++.+.+|+.++.++.++.
T Consensus 202 ~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 202 NSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp CHHHHEEEEECBTTTTBTTSSCC
T ss_pred CcccCCEEEEeeccCCCCcccch
Confidence 246788888888776653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.09 E-value=0.021 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+.|+|++|+|||||.+.|.+.+
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCeEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999999999999987643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.84 E-value=0.07 Score=42.28 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=31.0
Q ss_pred cchhccccEEEEEEEcCCCCCCHH----HHHHHHHHHH--hcCCCEEEEEeCCCCCC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPF----ALTRFLVEAE--STGIPLTLALNKVELVD 121 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~----~l~r~l~~a~--~~~~~~~ivlnK~Dl~~ 121 (276)
+....++|.+++|+|+........ .+...+.... ..++|+++|.||+|+.+
T Consensus 66 ~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~ 122 (207)
T d2fh5b1 66 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122 (207)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred hhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence 345689999999999864322111 2223333222 23457778889999965
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.82 E-value=0.062 Score=45.94 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=24.9
Q ss_pred chHHHHhh---ccCCEEEEEecCCCChhHHHHHHc
Q 023887 149 GLDSLLQR---LRDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 149 ~l~~l~~~---l~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++..+... -+|++++++|.+|+|||||+-.+.
T Consensus 55 GIraID~l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 55 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CceeeeeeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 34444443 499999999999999999976664
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.06 Score=44.16 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.8
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..+.|.|++|+||||+.++++.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHH
Confidence 3477889999999999998764
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.67 E-value=0.16 Score=41.17 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=34.5
Q ss_pred hhccccEEEEEEEcCCCCC-----CHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC
Q 023887 73 PVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAESTGIP-LTLALNKVELVD 121 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~-----~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~ 121 (276)
.++-+|.+++|+++.+... ...+..+.+..++..+.+ +++++||+|+..
T Consensus 101 g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~ 155 (224)
T d1jnya3 101 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 155 (224)
T ss_dssp TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred HHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCC
Confidence 5678899999999965311 112455666677777775 666799999974
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.50 E-value=0.04 Score=50.21 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=24.1
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+..+.+.++||||||||-|.++|++..
T Consensus 46 ei~ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 46 EVTPKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccccccEEEECCCCCCHHHHHHHHHHHh
Confidence 3456679999999999999999999855
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.35 E-value=0.044 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=19.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+-+.|+|+||+|||++++.|..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHHH
Confidence 45589999999999999976653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.32 E-value=0.067 Score=43.16 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=24.0
Q ss_pred hHHHHhhc-c---CCEEEEEecCCCChhHHHHHHcCC
Q 023887 150 LDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 150 l~~l~~~l-~---g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.|...+ . ...+.|.|++|+||||+.+.++..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHh
Confidence 44454443 2 345899999999999999987653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=0.081 Score=46.47 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl 119 (276)
++.-+|.+++|+|+.+. .. ..-++.+..|...++|+++++||+|.
T Consensus 116 al~~~D~allVVda~eG-v~-~qT~~~~~~a~~~~~p~i~viNKiDr 160 (341)
T d1n0ua2 116 ALRVTDGALVVVDTIEG-VC-VQTETVLRQALGERIKPVVVINKVDR 160 (341)
T ss_dssp HHHTCSEEEEEEETTTB-SC-HHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHhhcCceEEEEecccC-cc-hhHHHHHHHHHHcCCCeEEEEECccc
Confidence 57789999999999653 22 24566677778899999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.65 E-value=0.23 Score=38.70 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=31.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHH----HHHHH---HHHHhcCCCEEEEEeCCCCCCH
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFA----LTRFL---VEAESTGIPLTLALNKVELVDE 122 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~----l~r~l---~~a~~~~~~~~ivlnK~Dl~~~ 122 (276)
.+..+|.++.+.++.....+... +...+ ..+...++|+++|+||+|+.+.
T Consensus 70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 46677888888886532222122 22222 2333468899999999999754
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.94 E-value=0.087 Score=43.04 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+..+++|.||+++|||++.++|+...
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHHh
Confidence 44689999999999999998877643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.57 E-value=0.6 Score=34.93 Aligned_cols=86 Identities=10% Similarity=0.141 Sum_probs=51.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHH---HHhcCCCEEEEEeCCCCCCHHHHHHHHHHhh---------------
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVE---AESTGIPLTLALNKVELVDEEVLNTWKSRLH--------------- 133 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~---a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~--------------- 133 (276)
......+.+++++++..+.........+... ....++|.+++.||.|+........+...+.
T Consensus 76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (186)
T d1f6ba_ 76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 155 (186)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence 4567889999999987654333222222111 1235789999999999854221122222221
Q ss_pred --hcCceeEEEecCCccchHHHHhhc
Q 023887 134 --TWGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 --~~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
..++.++.+|+.++.+++++-.++
T Consensus 156 ~~~~~~~~~~~SA~tg~Gi~e~~~~l 181 (186)
T d1f6ba_ 156 LNARPLEVFMCSVLKRQGYGEGFRWM 181 (186)
T ss_dssp CCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred hhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 112457788999999998866554
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.54 E-value=0.091 Score=41.15 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|-++++-|.=|||||||.+.++...
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhc
Confidence 57789999999999999999988754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.13 E-value=0.069 Score=46.57 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...+.+.|+||+|||.|.++|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 34456668999999999999999853
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.13 E-value=0.085 Score=46.63 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-..+.|+||+|||||-|.++|+...
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcceeeeCCCCccHHHHHHHHHhhc
Confidence 44568999999999999999997643
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.89 E-value=0.076 Score=45.55 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=23.8
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHc
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++.+....+|++++++|.+|+|||+|+-.+.
T Consensus 59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred EecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 4444444499999999999999999975544
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.71 E-value=0.11 Score=42.17 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++++|+-++|||||+-.|+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.36 E-value=0.13 Score=43.44 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++.|.|+++.|||||+++|....
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999988744
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.19 E-value=0.11 Score=45.41 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|=|.-||||||++|.|....
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.17 Score=44.41 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=21.1
Q ss_pred HHHhhccCCEEEEEecCCCChhHHHHH
Q 023887 152 SLLQRLRDQTTVIVGPSGVGKSSLINA 178 (276)
Q Consensus 152 ~l~~~l~g~~v~lvG~sGvGKSTLiN~ 178 (276)
.+...+.+..+.|.|++|+||||++..
T Consensus 156 A~~~al~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 156 AAAVALTRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp HHHHHHTBSEEEEECCTTSTHHHHHHH
T ss_pred HHHHHHcCCeEEEEcCCCCCceehHHH
Confidence 344445788999999999999998743
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.05 E-value=0.087 Score=43.83 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHHHc
Q 023887 161 TTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~ 180 (276)
.++++|+-++|||||+..|+
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.02 E-value=0.12 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|.|=|.-|+||||+++.|....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGG
T ss_pred EEEEECCccCCHHHHHHHHHHHh
Confidence 67888999999999999999754
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.41 E-value=0.12 Score=38.70 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|-++.+.|-+|+|||||-|+|.-
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHH
Confidence 466888999999999999999854
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.17 Score=42.66 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|.++.|.|+||+|||||.=.++.
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHHH
Confidence 578999999999999999755543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.15 E-value=0.12 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+|=|.-||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 57888999999999999998643
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.85 E-value=0.13 Score=44.40 Aligned_cols=22 Identities=36% Similarity=0.783 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+.|+||+|+|||.|.+.|+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHH
Confidence 6788899999999999998853
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.73 E-value=0.11 Score=43.18 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.7
Q ss_pred CEEEEEecCCCChhHHH
Q 023887 160 QTTVIVGPSGVGKSSLI 176 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLi 176 (276)
.-+.|+|++|+||||.+
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEeeCCccHHHHH
Confidence 34678899999999754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.41 E-value=0.15 Score=42.82 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=13.8
Q ss_pred CEEEEEecCCCChhHHH
Q 023887 160 QTTVIVGPSGVGKSSLI 176 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLi 176 (276)
..+.|.|++|+||||.+
T Consensus 25 g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SCEEEEECTTSCHHHHH
T ss_pred CCEEEEecCCccHHHHH
Confidence 34778899999999765
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.63 E-value=0.089 Score=44.87 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.4
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHH
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L 179 (276)
++.+...-+|++++|+|.+|+|||+|+-.+
T Consensus 58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~ 87 (276)
T d1fx0a3 58 IDAMIPVGRGQRELIIGDRQTGKTAVATDT 87 (276)
T ss_dssp TTTTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred EeccccccCCceEeeccCCCCChHHHHHHH
Confidence 444444448999999999999999998643
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.14 E-value=0.28 Score=42.39 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=16.7
Q ss_pred cCCEEEEEecCCCChhHHH
Q 023887 158 RDQTTVIVGPSGVGKSSLI 176 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLi 176 (276)
.|.+.+|.|-||.|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 3778899999999999975
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.57 E-value=0.31 Score=42.18 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=16.7
Q ss_pred cCCEEEEEecCCCChhHHH
Q 023887 158 RDQTTVIVGPSGVGKSSLI 176 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLi 176 (276)
.|.+..|.|-||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 3678899999999999974
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.50 E-value=0.18 Score=36.41 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.7
Q ss_pred cCCEEEEEecCCCChhHH
Q 023887 158 RDQTTVIVGPSGVGKSSL 175 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTL 175 (276)
+|+.+.+.+++|+|||..
T Consensus 6 ~~~~~il~~~tGsGKT~~ 23 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRR 23 (140)
T ss_dssp TTCEEEECCCTTSSTTTT
T ss_pred cCCcEEEEcCCCCChhHH
Confidence 688999999999999943
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.84 E-value=0.43 Score=40.12 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.|.++-|.|++|+|||||.-.++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHH
Confidence 578999999999999999877665
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.33 E-value=0.31 Score=35.68 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.1
Q ss_pred CCEEEEEecCCCChhHHHHHHc
Q 023887 159 DQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.+...|.+++|+|||+++-.++
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 3567789999999999885443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.06 E-value=0.45 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.|.++.|.|++|+|||||.-.++
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHH
Confidence 58999999999999999964433
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.72 E-value=0.38 Score=41.67 Aligned_cols=19 Identities=42% Similarity=0.660 Sum_probs=17.0
Q ss_pred cCCEEEEEecCCCChhHHH
Q 023887 158 RDQTTVIVGPSGVGKSSLI 176 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLi 176 (276)
.|.+..|.|-||.|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 4778899999999999996
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=80.71 E-value=1.1 Score=38.46 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=45.1
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----------hcCceeEE
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-----------TWGYEPLF 141 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----------~~~~~~~~ 141 (276)
+..-+|.+++|......+ ....+-+.+. +- +=++|+||+|+............+. .|..+++.
T Consensus 164 i~~~aD~~l~v~~P~~Gd-~iq~~k~gi~--e~---aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~ 237 (327)
T d2p67a1 164 VARMVDCFISLQIAGGGD-DLQGIKKGLM--EV---ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLT 237 (327)
T ss_dssp HHTTCSEEEEEECC-------CCCCHHHH--HH---CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEE
T ss_pred hhhccceEEEEecCCCch-hhhhhchhhh--cc---ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEE
Confidence 356788888877643211 1111122221 11 2378899999987554332222221 24457899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.++++|-..+
T Consensus 238 ~SA~~g~Gi~eL~~~I 253 (327)
T d2p67a1 238 CSALEKRGIDEIWHAI 253 (327)
T ss_dssp CBGGGTBSHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHH
Confidence 9999999998887765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.61 E-value=0.64 Score=39.84 Aligned_cols=39 Identities=10% Similarity=-0.038 Sum_probs=32.5
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|+|.. ++|+.....+.+.+.++...+ +|++||+.
T Consensus 356 pililDE~d~---~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~ 396 (427)
T d1w1wa_ 356 PFFVLDEVDA---ALDITNVQRIAAYIRRHRNPDLQFIVISLKN 396 (427)
T ss_dssp SEEEESSTTT---TCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 3578899999 999988889999998886443 99999973
|