Citrus Sinensis ID: 023913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccccEEEEEccccccccccccccccccHHHHHHccccccEEEEEEcccEEEEccccccccEEEEEEEccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEcccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccccHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHccEEEEEEEccccccccccccccccHccEEEEEcccccHHccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mashdhhthdhahhhhhdndhdhtheknhgdstatswvgsdgrvyhshdglaphshepiyspgyfsrrappilsrnfneraftvgiggpvgtGKTALMLALCKFLRDKYslaavtndiftkedgeflmrngalpeeriravetggcphaairedisinlgpleelsnlFKADLLLcesggdnlaaNFSRELADYIIYIIDVsggdkiprkggpgitqadlLVINKTDLASAIGADLAVMERDalrmrdggpfifAQVGWVIGIIFTLSITHYIVS
Flexible Loop (DISEMBL)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTndiftkedgefLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Low Complexity Region (SEG)
MAShdhhthdhahhhhhdndhdhthEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Disordered region (IsUnstruct)
**********************************************************IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIV*
Disordered Region (DISOPRED)
******************************************************SHEPIYSPGYFS***P***SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Disordered Region (DISEMBL)
*********************************ATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Disordered Region (DISPRO)
************************************WVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q96WV0	286	Uncharacterized urease ac	yes	no	0.763	0.734	0.672	4e-77
A9GP90	302	Urease accessory protein	yes	no	0.730	0.665	0.702	3e-75
Q11VN1	244	Urease accessory protein	yes	no	0.738	0.831	0.666	2e-72
A7HHN3	236	Urease accessory protein	yes	no	0.756	0.881	0.682	1e-71
B1M3X4	205	Urease accessory protein	yes	no	0.64	0.858	0.661	8e-63
B8IJ81	204	Urease accessory protein	yes	no	0.64	0.862	0.672	1e-62
B0UBI3	204	Urease accessory protein	yes	no	0.64	0.862	0.666	3e-62
A4VQW0	204	Urease accessory protein	yes	no	0.650	0.877	0.644	4e-62
A4XQ16	204	Urease accessory protein	yes	no	0.650	0.877	0.633	4e-62
Q8DMQ4	200	Urease accessory protein	yes	no	0.672	0.925	0.612	6e-62

>sp|Q96WV0|UREG_SCHPO Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB16A4.05c PE=3 SV=1

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 142/211 (67%), Positives = 176/211 (83%), Gaps = 1/211 (0%)

Query: 54  HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
           HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct: 58  HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query: 113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
            VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct: 118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query: 173 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAI 232
           LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +
Sbjct: 178 LLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLV 237

Query: 233 GADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           GADL+VM+RDA ++R+ GP +FAQV   +G+
Sbjct: 238 GADLSVMDRDAKKIRENGPIVFAQVKNQVGM 268

Probably facilitates nickel incorporation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A9GP90|UREG_SORC5 Urease accessory protein UreG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 161/202 (79%), Gaps = 1/202 (0%)

Query: 62  PGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTK 121
           PG FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+
Sbjct: 80  PGLFSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQ 138

Query: 122 EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 181
           ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L +     LL+ ESGGD
Sbjct: 139 EDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGD 198

Query: 182 NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMER 241
           NLAA +SREL DY IY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA  +GADL VMER
Sbjct: 199 NLAAQYSRELVDYTIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAPHVGADLGVMER 258

Query: 242 DALRMRDGGPFIFAQVGWVIGI 263
           DA RMR  GPF+FAQ     G+
Sbjct: 259 DARRMRGDGPFLFAQCNRSQGV 280

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Sorangium cellulosum (strain So ce56) (taxid: 448385)

>sp|Q11VN1|UREG_CYTH3 Urease accessory protein UreG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/204 (66%), Positives = 159/204 (77%), Gaps = 1/204 (0%)

Query: 61  SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           SPG+F  R      RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT
Sbjct: 15  SPGHFHHRELIHEKRNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFT 74

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESG 179
            ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL   F   +LL  ESG
Sbjct: 75  SEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESG 134

Query: 180 GDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 239
           GDNLAA+FS+EL DY +Y+IDVSGGDKIPRKGGPGITQADLLVINK DLA  + ADL+VM
Sbjct: 135 GDNLAAHFSKELVDYSVYVIDVSGGDKIPRKGGPGITQADLLVINKIDLAHLVNADLSVM 194

Query: 240 ERDALRMRDGGPFIFAQVGWVIGI 263
           ERD+ +MR  GPF+FA+     GI
Sbjct: 195 ERDSKKMRGDGPFLFARAKDCFGI 218

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|A7HHN3|UREG_ANADF Urease accessory protein UreG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 142/208 (68%), Positives = 166/208 (79%)

Query: 56  HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT 115
           H+    PG F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VT
Sbjct: 10  HDHGLGPGSFHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVT 69

Query: 116 NDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLL 175
           NDIFT+ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L 
Sbjct: 70  NDIFTREDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILF 129

Query: 176 CESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 235
           CESGGDNLAA+FSRELADY IY+IDV+GGDK+PRKGGPGITQADLLV+NKTDLA+A+GAD
Sbjct: 130 CESGGDNLAAHFSRELADYTIYVIDVAGGDKVPRKGGPGITQADLLVVNKTDLATAVGAD 189

Query: 236 LAVMERDALRMRDGGPFIFAQVGWVIGI 263
           L VM RDA RMR  GP +FAQV   +G+
Sbjct: 190 LDVMARDAARMRGDGPVVFAQVTRGVGV 217

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Anaeromyxobacter sp. (strain Fw109-5) (taxid: 404589)

>sp|B1M3X4|UREG1_METRJ Urease accessory protein UreG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1

 Score =  240 bits (613), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 138/177 (77%), Gaps = 1/177 (0%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141
             VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  V
Sbjct: 8   LRVGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGV 67

Query: 142 ETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIID 200
           ETGGCPH AIRED SINL  + E+S  F K DL+L ESGGDNLAA FS ELAD  +Y+ID
Sbjct: 68  ETGGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNLAATFSPELADITLYVID 127

Query: 201 VSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
           V+GG+KIPRKGGPGIT++DLL++NKTDLA  +GADL+VME D  RMR   P++FA +
Sbjct: 128 VAGGEKIPRKGGPGITRSDLLIVNKTDLAPLVGADLSVMESDTQRMRGTRPYVFASL 184

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) (taxid: 426355)

>sp|B8IJ81|UREG_METNO Urease accessory protein UreG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ureG PE=3 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 136/177 (76%), Gaps = 1/177 (0%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141
             VGIGGPVG+GKTALM  LCK LR +Y L A+TNDI+TKED   L   GALPEERI  V
Sbjct: 9   LRVGIGGPVGSGKTALMEGLCKALRARYDLCAITNDIYTKEDARLLTVAGALPEERIMGV 68

Query: 142 ETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIID 200
           ETGGCPH AIRED SINL  + E+   F A DL+L ESGGDNLAA FS ELAD  +Y+ID
Sbjct: 69  ETGGCPHTAIREDASINLAAVAEMRRRFPALDLILIESGGDNLAATFSPELADLTLYVID 128

Query: 201 VSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
           V+GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR   P++F  +
Sbjct: 129 VAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTRRMRGSRPYVFTSL 185

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)

>sp|B0UBI3|UREG_METS4 Urease accessory protein UreG OS=Methylobacterium sp. (strain 4-46) GN=ureG PE=3 SV=1

 Score =  238 bits (607), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 137/177 (77%), Gaps = 1/177 (0%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV 141
             VGIGGPVG+GKTALM  LCK LR ++ L A+TNDI+TKED   L   GALPEERI  V
Sbjct: 9   LRVGIGGPVGSGKTALMEGLCKALRGRFDLCAITNDIYTKEDARLLTVAGALPEERIMGV 68

Query: 142 ETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIID 200
           ETGGCPH AIRED SINL  + E+   F + DL+L ESGGDNLAA FS ELAD  +Y+ID
Sbjct: 69  ETGGCPHTAIREDASINLAAVAEMRRRFPSLDLILIESGGDNLAATFSPELADLTLYVID 128

Query: 201 VSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
           V+GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR G P++F  +
Sbjct: 129 VAGGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTQRMRGGRPYVFTSL 185

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|A4VQW0|UREG_PSEU5 Urease accessory protein UreG OS=Pseudomonas stutzeri (strain A1501) GN=ureG PE=3 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 141/180 (78%), Gaps = 1/180 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LRD+Y+LA VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNTQPLRVGIGGPVGSGKTALTLALCQALRDRYNLAVVTNDIYTQEDAQFLVRNEALAPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYI 195
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGGDNL+A FS EL+D  
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLT 120

Query: 196 IYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 255
           IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L VM+RDA +MR   PF+F+
Sbjct: 121 IYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPMVGASLEVMDRDARKMRGERPFVFS 180

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

>sp|A4XQ16|UREG_PSEMY Urease accessory protein UreG OS=Pseudomonas mendocina (strain ymp) GN=ureG PE=3 SV=1

 Score =  238 bits (606), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/180 (63%), Positives = 141/180 (78%), Gaps = 1/180 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LR++Y++A VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNSQPLRVGIGGPVGSGKTALTLALCRALRERYNIAVVTNDIYTQEDAQFLVRNEALEPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYI 195
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGGDNL+A FS EL+D  
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLT 120

Query: 196 IYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 255
           +Y+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L VMERD L+MR   PF+F+
Sbjct: 121 LYVIDVSAGDKLPRKGGPGICKSDLLVINKVDLAPMVGASLEVMERDTLKMRGDKPFVFS 180

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

>sp|Q8DMQ4|UREG_THEEB Urease accessory protein UreG OS=Thermosynechococcus elongatus (strain BP-1) GN=ureG PE=3 SV=1

 Score =  237 bits (605), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 114/186 (61%), Positives = 141/186 (75%), Gaps = 1/186 (0%)

Query: 79  ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
           E    VG+ GPVG+GKTAL+ ALCK LRD+Y LA VTNDI+T+ED +FL+R+ ALP ERI
Sbjct: 2   ETVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQEDAQFLVRSQALPPERI 61

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIY 197
             VETGGCPH AIRED S+NL  +++L   F+  DL+  ESGGDNLAA FS EL D  IY
Sbjct: 62  LGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVESGGDNLAATFSPELVDLTIY 121

Query: 198 IIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
           +IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GADL VM+RD L+MR   P++   +
Sbjct: 122 VIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPYVGADLEVMKRDTLKMRGDRPYVMTNL 181

Query: 258 GWVIGI 263
              +G+
Sbjct: 182 KTGLGL 187

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
222143562	279	urease accessory protein ureG [Morus alb	0.850	0.838	0.905	1e-121
297740673	521	unnamed protein product [Vitis vinifera]	0.945	0.499	0.825	1e-121
297826907	278	predicted protein [Arabidopsis lyrata su	0.861	0.852	0.890	1e-121
255557339	275	Urease accessory protein ureG, putative	0.832	0.832	0.908	1e-120
15226754	275	urease accessory protein [Arabidopsis th	0.861	0.861	0.886	1e-120
79324312	276	urease accessory protein [Arabidopsis th	0.861	0.858	0.886	1e-120
449500609	287	PREDICTED: uncharacterized urease access	0.854	0.818	0.886	1e-120
449459358	277	PREDICTED: uncharacterized urease access	0.854	0.848	0.886	1e-120
225463462	369	PREDICTED: uncharacterized urease access	0.909	0.677	0.856	1e-120
147811197	369	hypothetical protein VITISV_030019 [Viti	0.909	0.677	0.856	1e-120

>gi|222143562|dbj|BAH19310.1| urease accessory protein ureG [Morus alba]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/234 (90%), Positives = 224/234 (95%)

Query: 30  GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGP 89
           GDS   +WVG DGRVYHSHDGLAPHSHEPIYSPG FS+RAPP+L+R+FNERAFT+GIGGP
Sbjct: 26  GDSRTGAWVGPDGRVYHSHDGLAPHSHEPIYSPGSFSKRAPPLLTRDFNERAFTIGIGGP 85

Query: 90  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149
           VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHA
Sbjct: 86  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGCPHA 145

Query: 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR 209
           AIREDISINLGPLEELSNLFKAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPR
Sbjct: 146 AIREDISINLGPLEELSNLFKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPR 205

Query: 210 KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           KGGPGITQADLLVINKTDLA A+GADLAVMERDALRMRDGGPF+FAQV   +GI
Sbjct: 206 KGGPGITQADLLVINKTDLAPAVGADLAVMERDALRMRDGGPFVFAQVKHGVGI 259

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740673|emb|CBI30855.3| unnamed protein product [Vitis vinifera]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/263 (82%), Positives = 235/263 (89%), Gaps = 3/263 (1%)

Query: 4   HDHHTHDHA---HHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIY 60
           +D H  D+     HHH  +D    H   H D  A SWVG DG++YHSHDGLAPH+HEPIY
Sbjct: 239 NDSHGEDYEPGNDHHHESSDDHKHHHHGHPDMKAESWVGPDGKLYHSHDGLAPHTHEPIY 298

Query: 61  SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           SPGYFSRRAPP+L+RNF+ERAFTVGIGGPVGTGKTALMLALC+ LR+KYSLAAVTNDIFT
Sbjct: 299 SPGYFSRRAPPLLTRNFHERAFTVGIGGPVGTGKTALMLALCQCLREKYSLAAVTNDIFT 358

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG 180
           KEDGEFL+++GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK D+LLCESGG
Sbjct: 359 KEDGEFLVKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKVDILLCESGG 418

Query: 181 DNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME 240
           DNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA A+GADLAVME
Sbjct: 419 DNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAVGADLAVME 478

Query: 241 RDALRMRDGGPFIFAQVGWVIGI 263
           RD+LRMRDGGPFIFAQV   +GI
Sbjct: 479 RDSLRMRDGGPFIFAQVRHGVGI 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826907|ref|XP_002881336.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327175|gb|EFH57595.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/237 (89%), Positives = 225/237 (94%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G    +SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 22  KSDGGEGKSSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTVGI 81

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 82  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 141

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
           PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct: 142 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 201

Query: 207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERDALRMRDGGPF+FAQV   +G+
Sbjct: 202 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDALRMRDGGPFVFAQVKHGLGV 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557339|ref|XP_002519700.1| Urease accessory protein ureG, putative [Ricinus communis] gi|223541117|gb|EEF42673.1| Urease accessory protein ureG, putative [Ricinus communis]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/229 (90%), Positives = 223/229 (97%)

Query: 35  TSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGK 94
           TSW+G+DGRVYHSHDGLAPHSHEPIYSPG+FSRRAPPIL+R+F+ERAFTVGIGGPVGTGK
Sbjct: 27  TSWLGADGRVYHSHDGLAPHSHEPIYSPGFFSRRAPPILTRDFSERAFTVGIGGPVGTGK 86

Query: 95  TALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154
           TALMLA+CKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHAAIRED
Sbjct: 87  TALMLAICKFLRDKYSLAAVTNDIFTKEDGEFLIKNGALPEERIRAVETGGCPHAAIRED 146

Query: 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG 214
           ISINLGPLEELS LFK D+LLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG
Sbjct: 147 ISINLGPLEELSKLFKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG 206

Query: 215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           ITQADLLVINKTDLASA+GADL VMERDA+RMRDGGPF+FAQV   +G+
Sbjct: 207 ITQADLLVINKTDLASAVGADLTVMERDAVRMRDGGPFVFAQVKHGVGV 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226754|ref|NP_180994.1| urease accessory protein [Arabidopsis thaliana] gi|3128220|gb|AAC26700.1| putative urease accessory protein [Arabidopsis thaliana] gi|20197163|gb|AAM14950.1| putative urease accessory protein [Arabidopsis thaliana] gi|21553947|gb|AAM63028.1| putative urease accessory protein [Arabidopsis thaliana] gi|26453270|dbj|BAC43708.1| putative urease accessory protein [Arabidopsis thaliana] gi|28950833|gb|AAO63340.1| At2g34470 [Arabidopsis thaliana] gi|330253884|gb|AEC08978.1| urease accessory protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 224/237 (94%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 19  KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 78

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 79  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 138

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
           PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct: 139 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 198

Query: 207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERD+LRMRDGGPF+FAQV   +G+
Sbjct: 199 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDSLRMRDGGPFVFAQVKHGLGV 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324312|ref|NP_001031481.1| urease accessory protein [Arabidopsis thaliana] gi|330253885|gb|AEC08979.1| urease accessory protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 224/237 (94%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 20  KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 79

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 80  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 139

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
           PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct: 140 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 199

Query: 207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERD+LRMRDGGPF+FAQV   +G+
Sbjct: 200 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDSLRMRDGGPFVFAQVKHGLGV 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500609|ref|XP_004161145.1| PREDICTED: uncharacterized urease accessory protein ureG-like [Cucumis sativus]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/238 (88%), Positives = 228/238 (95%), Gaps = 3/238 (1%)

Query: 26  EKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVG 85
           EK  GDS   S+VG+DGRVYHSHDGLAPHSHEPIYSPG+F+RRAPP+L+RNFNERAFTVG
Sbjct: 33  EKPKGDS---SFVGADGRVYHSHDGLAPHSHEPIYSPGFFTRRAPPLLTRNFNERAFTVG 89

Query: 86  IGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145
           IGGPVGTGKTALMLALC FLRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGG
Sbjct: 90  IGGPVGTGKTALMLALCTFLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGG 149

Query: 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGD 205
           CPHAAIREDISINLGPLEELSNL+K D+LLCESGGDNLAANFSRELADYIIYIIDVSGGD
Sbjct: 150 CPHAAIREDISINLGPLEELSNLYKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGD 209

Query: 206 KIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           KIPRKGGPGITQADLLVINKTDLA+A+GADLAVMERDAL+MRDGGPF+FAQV   +G+
Sbjct: 210 KIPRKGGPGITQADLLVINKTDLATAVGADLAVMERDALKMRDGGPFVFAQVKHGVGV 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459358|ref|XP_004147413.1| PREDICTED: uncharacterized urease accessory protein ureG-like [Cucumis sativus]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/238 (88%), Positives = 228/238 (95%), Gaps = 3/238 (1%)

Query: 26  EKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVG 85
           EK  GDS   S+VG+DGRVYHSHDGLAPHSHEPIYSPG+F+RRAPP+L+RNFNERAFTVG
Sbjct: 23  EKPKGDS---SFVGADGRVYHSHDGLAPHSHEPIYSPGFFTRRAPPLLTRNFNERAFTVG 79

Query: 86  IGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145
           IGGPVGTGKTALMLALC FLRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGG
Sbjct: 80  IGGPVGTGKTALMLALCTFLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGG 139

Query: 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGD 205
           CPHAAIREDISINLGPLEELSNL+K D+LLCESGGDNLAANFSRELADYIIYIIDVSGGD
Sbjct: 140 CPHAAIREDISINLGPLEELSNLYKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGD 199

Query: 206 KIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
           KIPRKGGPGITQADLLVINKTDLA+A+GADLAVMERDAL+MRDGGPF+FAQV   +G+
Sbjct: 200 KIPRKGGPGITQADLLVINKTDLATAVGADLAVMERDALKMRDGGPFVFAQVKHGVGV 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463462|ref|XP_002276305.1| PREDICTED: uncharacterized urease accessory protein ureG-like [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/250 (85%), Positives = 230/250 (92%)

Query: 14  HHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPIL 73
           HHH  +D    H   H D  A SWVG DG++YHSHDGLAPH+HEPIYSPGYFSRRAPP+L
Sbjct: 100 HHHESSDDHKHHHHGHPDMKAESWVGPDGKLYHSHDGLAPHTHEPIYSPGYFSRRAPPLL 159

Query: 74  SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
           +RNF+ERAFTVGIGGPVGTGKTALMLALC+ LR+KYSLAAVTNDIFTKEDGEFL+++GAL
Sbjct: 160 TRNFHERAFTVGIGGPVGTGKTALMLALCQCLREKYSLAAVTNDIFTKEDGEFLVKHGAL 219

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD 193
           PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK D+LLCESGGDNLAANFSRELAD
Sbjct: 220 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKVDILLCESGGDNLAANFSRELAD 279

Query: 194 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI 253
           YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA A+GADLAVMERD+LRMRDGGPFI
Sbjct: 280 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAVGADLAVMERDSLRMRDGGPFI 339

Query: 254 FAQVGWVIGI 263
           FAQV   +GI
Sbjct: 340 FAQVRHGVGI 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811197|emb|CAN70160.1| hypothetical protein VITISV_030019 [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/250 (85%), Positives = 230/250 (92%)

Query: 14  HHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPIL 73
           HHH  +D    H   H D  A SWVG DG++YHSHDGLAPH+HEPIYSPGYFSRRAPP+L
Sbjct: 100 HHHESSDDHKHHHHGHPDMKAESWVGPDGKLYHSHDGLAPHTHEPIYSPGYFSRRAPPLL 159

Query: 74  SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
           +RNF+ERAFTVGIGGPVGTGKTALMLALC+ LR+KYSLAAVTNDIFTKEDGEFL+++GAL
Sbjct: 160 TRNFHERAFTVGIGGPVGTGKTALMLALCQCLREKYSLAAVTNDIFTKEDGEFLVKHGAL 219

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD 193
           PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK D+LLCESGGDNLAANFSRELAD
Sbjct: 220 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKVDILLCESGGDNLAANFSRELAD 279

Query: 194 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI 253
           YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA A+GADLAVMERD+LRMRDGGPFI
Sbjct: 280 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAPAVGADLAVMERDSLRMRDGGPFI 339

Query: 254 FAQVGWVIGI 263
           FAQV   +GI
Sbjct: 340 FAQVRHGVGI 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2040894	276	UREG "AT2G34470" [Arabidopsis	0.861	0.858	0.886	1.4e-112
UNIPROTKB|G4NCH0	277	MGG_01086 "Uncharacterized pro	0.792	0.787	0.699	2.5e-83
POMBASE|SPCPB16A4.05c	286	SPCPB16A4.05c "urease accessor	0.763	0.734	0.672	4.1e-77
ASPGD|ASPL0000062920	266	ureD [Emericella nidulans (tax	0.770	0.796	0.688	5.5e-77
UNIPROTKB|Q48DC7	205	ureG "Urease accessory protein	0.647	0.868	0.631	2.5e-56
UNIPROTKB|P0A664	224	ureG "Urease accessory protein	0.705	0.866	0.545	1.1e-53
UNIPROTKB|P18319	205	ureG "Urease accessory protein	0.661	0.887	0.606	1e-52
TIGR_CMR|SPO_1717	215	SPO_1717 "urease accessory pro	0.632	0.809	0.6	3.5e-52
TIGR_CMR|CJE_0726	247	CJE_0726 "hydrogenase accessor	0.658	0.732	0.264	1.1e-06
TIGR_CMR|GSU_0305	254	GSU_0305 "hydrogenase accessor	0.705	0.763	0.285	6.7e-06

TAIR|locus:2040894 UREG "AT2G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 210/237 (88%), Positives = 224/237 (94%)

Query:    27 KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
             K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct:    20 KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 79

Query:    87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
             GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct:    80 GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 139

Query:   147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
             PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct:   140 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 199

Query:   207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
             IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERD+LRMRDGGPF+FAQV   +G+
Sbjct:   200 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDSLRMRDGGPFVFAQVKHGLGV 256

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|G4NCH0 MGG_01086 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 793 (284.2 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 158/226 (69%), Positives = 180/226 (79%)

Query:    46 HSHDGLA------PHSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALM 98
             HSHDG         HSHE +  PG Y  R  P +  R+F+ERAFT+GIGGPVG+GKTALM
Sbjct:    15 HSHDGSTFNAQEHGHSHEILTGPGSYLGREMPIVEGRDFSERAFTIGIGGPVGSGKTALM 74

Query:    99 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158
             LALC  LRD +SLAAVTNDIFT+ED EFL RN ALP  RIRA+ETGGCPHAA+REDIS N
Sbjct:    75 LALCLALRDTHSLAAVTNDIFTREDAEFLTRNKALPPSRIRAIETGGCPHAAVREDISAN 134

Query:   159 LGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQ 217
             L  LE+L   F   DLLL ESGGDNLAAN+SRELAD+IIY+IDVSGGDKIPRKGGPGITQ
Sbjct:   135 LACLEDLHRTFNGVDLLLIESGGDNLAANYSRELADFIIYVIDVSGGDKIPRKGGPGITQ 194

Query:   218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
             +DLLV+NKTDLA  +GADL VMERDA +MR+GGP +FAQV   +G+
Sbjct:   195 SDLLVVNKTDLAEIVGADLGVMERDARKMREGGPTVFAQVKKSVGV 240

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCPB16A4.05c SPCPB16A4.05c "urease accessory protein UREG (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 759 (272.2 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 142/211 (67%), Positives = 176/211 (83%)

Query:    54 HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
             HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct:    58 HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query:   113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
              VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct:   118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query:   173 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAI 232
             LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +
Sbjct:   178 LLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLV 237

Query:   233 GADLAVMERDALRMRDGGPFIFAQVGWVIGI 263
             GADL+VM+RDA ++R+ GP +FAQV   +G+
Sbjct:   238 GADLSVMDRDAKKIRENGPIVFAQVKNQVGM 268

GO:0003924 "GTPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0016530 "metallochaperone activity" evidence=IEA

GO:0019627 "urea metabolic process" evidence=ISM

GO:0042803 "protein homodimerization activity" evidence=IEA

ASPGD|ASPL0000062920 ureD [Emericella nidulans (taxid:162425)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 148/215 (68%), Positives = 180/215 (83%)

Query:    46 HSHDGLAPH--SHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALC 102
             HSHD +A H  SHE +  PG Y +R  P I  R++++RAFT+GIGGPVG+GKTALMLALC
Sbjct:     9 HSHDNIADHGHSHEILDGPGSYLNREQPLIEDRDWSDRAFTIGIGGPVGSGKTALMLALC 68

Query:   103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162
             + LRD+Y++AAVTNDIFT+ED EFL RN AL  +RIRA+ETGGCPHAA+REDIS NL  L
Sbjct:    69 RALRDEYNIAAVTNDIFTREDAEFLTRNKALSPDRIRAIETGGCPHAAVREDISANLLAL 128

Query:   163 EELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLV 222
             + L   F+ DLLL ESGGDNLAAN+SRELAD+IIY+IDV+GGDK+PRKGGPGIT +DLLV
Sbjct:   129 QNLHRQFQTDLLLIESGGDNLAANYSRELADFIIYVIDVAGGDKVPRKGGPGITGSDLLV 188

Query:   223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
             +NK DLA A+GAD++VMERDA +MR+GGP +FA V
Sbjct:   189 VNKIDLAEAVGADISVMERDAAKMREGGPTVFAVV 223

GO:0043419 "urea catabolic process" evidence=IMP

GO:0009039 "urease activity" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

UNIPROTKB|Q48DC7 ureG "Urease accessory protein UreG" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 113/179 (63%), Positives = 139/179 (77%)

Query:    78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
             N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ER
Sbjct:     2 NSQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNEALAPER 61

Query:   138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYII 196
             I  VETGGCPH AIRED SINL  +++L+  F+  DL++ ESGGDNL+A FS EL+D  I
Sbjct:    62 IIGVETGGCPHTAIREDASINLEAVDQLNRRFEGLDLIIVESGGDNLSATFSPELSDLTI 121

Query:   197 YIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 255
             Y+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L +M+ D  RMR   PF+F+
Sbjct:   122 YVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLEMMDSDTRRMRGEKPFVFS 180

GO:0016530 "metallochaperone activity" evidence=ISS

UNIPROTKB|P0A664 ureG "Urease accessory protein UreG" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 114/209 (54%), Positives = 145/209 (69%)

Query:    46 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105
             HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ L
Sbjct:     4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQL 49

Query:   106 RDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL 165
             R + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL
Sbjct:    50 RGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDEL 109

Query:   166 SNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVIN 224
                  A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+N
Sbjct:   110 MAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLLVVN 169

Query:   225 KTDLASAIGADLAVMERDALRMRDGGPFI 253
             KTDLA+ +GADLAVM RDA  +RDG P +
Sbjct:   170 KTDLAALVGADLAVMARDADAVRDGRPTV 198

GO:0003924 "GTPase activity" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|P18319 ureG "Urease accessory protein UreG" [Enterobacter aerogenes (taxid:548)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 111/183 (60%), Positives = 130/183 (71%)

Query:    76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE 135
             N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  
Sbjct:     2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAP 61

Query:   136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADY 194
             ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD 
Sbjct:    62 ERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADL 121

Query:   195 IIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254
              IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA  +GA L VM  D  RMR   P+ F
Sbjct:   122 TIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGASLEVMASDTQRMRGDRPWTF 181

Query:   255 AQV 257
               +
Sbjct:   182 TNL 184

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SPO_1717 SPO_1717 "urease accessory protein UreG" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 105/175 (60%), Positives = 132/175 (75%)

Query:    84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
             VGIGGPVG GKT L  AL + LRD +S+  +TNDI+T+ED E LMR   LP++RI  VET
Sbjct:    10 VGIGGPVGAGKTTLTAALSEALRDSHSIGVITNDIYTREDAEALMRLQILPQDRIIGVET 69

Query:   144 GGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVS 202
             GGCPH AIRED SINL  + E+       +++L ESGGDNL+A FS ELAD  +Y+IDV+
Sbjct:    70 GGCPHTAIREDASINLAAVAEMERRHPGIEIILIESGGDNLSATFSPELADVTLYVIDVA 129

Query:   203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
              G++IPRKGGP IT++D+L+INKTDLA  +GA L VMERDA RMR G PF+F+ +
Sbjct:   130 AGEEIPRKGGPAITKSDILIINKTDLAPHVGASLEVMERDAGRMRCGRPFVFSSL 184

GO:0019627 "urea metabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

TIGR_CMR|CJE_0726 CJE_0726 "hydrogenase accessory protein HypB" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 54/204 (26%), Positives = 89/204 (43%)

Query:    46 HSHDGLAPHSHE-PIYSPGYFSRRAPPILSRN----------FNE-RAFTVGIGGPVGTG 93
             H+H     H HE P    G        ILS+N          FNE     + +    G+G
Sbjct:    13 HTHGHHHDHHHENPSLKEGKTIEVISKILSKNDEEAKHNRAHFNEANTLCINLMSSPGSG 72

Query:    94 KTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE 153
             KT L+ +  K L+++  +A +  D+ T  D   +   GAL  +    + TG   H     
Sbjct:    73 KTTLLESTIKALKNELKIAVIEGDLETNNDALRVKNAGALAYQ----ITTGQSCHL---- 124

Query:   154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYI-IYIIDVSGGDKIPRKGG 212
             D  +    L  L+ +   DLL  E+ G NL    S +L +++ + ++ ++ G   P+K  
Sbjct:   125 DAFMVHEALHHLA-IDDVDLLFIENVG-NLVCPASYDLGEHLNVVLLSITEGSDKPQKYP 182

Query:   213 PGITQADLLVINKTDLASAIGADL 236
                 +AD+++I K DLA     D+
Sbjct:   183 VMFKKADIVLITKADLAHHFDFDI 206

GO:0000166 "nucleotide binding" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016530 "metallochaperone activity" evidence=ISS

TIGR_CMR|GSU_0305 GSU_0305 "hydrogenase accessory protein HypB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 63/221 (28%), Positives = 96/221 (43%)

Query:    45 YHSHDGLAPHSHEPIYSPGYFSRRAP---PILSRN--F--NERA-------FTVGIGGPV 90
             +H H     HSH   +     SR+      ILSRN  F  + RA       F + +    
Sbjct:    15 HHEHGHGHSHSHGHTHDDERESRKIAVETDILSRNNRFAADNRALFAKKGVFVLNLVSSP 74

Query:    91 GTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHA 149
             G+GKT  +      L D+Y  A +  D  T  D + +   G +P    R + TG GC H 
Sbjct:    75 GSGKTTTLERTLGDLSDRYRCAVIEGDQQTDNDAQRIAATG-VPA---RQINTGAGC-HL 129

Query:   150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYI-IYIIDVSGGDKIP 208
                 D  + +G   E  +L   DLLL E+ G NL    S +L ++  + ++ V+ G+  P
Sbjct:   130 ----DAHM-VGHAAEEFDLDALDLLLVENVG-NLVCPASFDLGEHHKVVVLSVTEGEDKP 183

Query:   209 RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG 249
              K       AD++++NK DL   +  D+      A R+  G
Sbjct:   184 LKYPNMFHAADVMLLNKIDLLPYVDFDVEKCLEMARRVSPG 224

GO:0000166 "nucleotide binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0016530 "metallochaperone activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02FC5	UREG_PSEAB	No assigned EC number	0.6388	0.6509	0.8774	yes	no
B1ZHN6	UREG1_METPB	No assigned EC number	0.6497	0.64	0.8627	yes	no
B8EPU6	UREG_METSB	No assigned EC number	0.6120	0.6618	0.8834	yes	no
Q6FD79	UREG_ACIAD	No assigned EC number	0.6229	0.6581	0.8872	yes	no
Q0I662	UREG_SYNS3	No assigned EC number	0.6440	0.64	0.88	yes	no
B0V9P2	UREG_ACIBY	No assigned EC number	0.6229	0.6581	0.8872	yes	no
Q0AC95	UREG_ALHEH	No assigned EC number	0.6404	0.6436	0.8388	yes	no
A3M3F5	UREG_ACIBT	No assigned EC number	0.6229	0.6581	0.8872	yes	no
Q4QN12	UREG_HAEI8	No assigned EC number	0.555	0.6872	0.84	yes	no
Q8DMQ4	UREG_THEEB	No assigned EC number	0.6129	0.6727	0.925	yes	no
A6SZ10	UREG_JANMA	No assigned EC number	0.6327	0.64	0.8341	yes	no
Q2SDP8	UREG_HAHCH	No assigned EC number	0.5989	0.6581	0.8872	yes	no
A9W6X0	UREG1_METEP	No assigned EC number	0.6497	0.64	0.8627	yes	no
Q7V3V8	UREG_PROMM	No assigned EC number	0.6327	0.64	0.8712	yes	no
Q0BHN8	UREG_BURCM	No assigned EC number	0.5454	0.72	0.9209	yes	no
B1JX26	UREG_BURCC	No assigned EC number	0.5765	0.7090	0.9069	yes	no
A4VQW0	UREG_PSEU5	No assigned EC number	0.6444	0.6509	0.8774	yes	no
Q96WV0	UREG_SCHPO	No assigned EC number	0.6729	0.7636	0.7342	yes	no
Q3AGD6	UREG_SYNSC	No assigned EC number	0.6384	0.64	0.8756	yes	no
P44396	UREG_HAEIN	No assigned EC number	0.56	0.6872	0.84	yes	no
Q11VN1	UREG_CYTH3	No assigned EC number	0.6666	0.7381	0.8319	yes	no
B8IJ81	UREG_METNO	No assigned EC number	0.6723	0.64	0.8627	yes	no
B2HVS4	UREG_ACIBC	No assigned EC number	0.6229	0.6581	0.8872	yes	no
Q9HUS0	UREG_PSEAE	No assigned EC number	0.6388	0.6509	0.8774	yes	no
B0VSB5	UREG_ACIBS	No assigned EC number	0.6229	0.6581	0.8872	yes	no
B3H2K9	UREG_ACTP7	No assigned EC number	0.5677	0.6581	0.8578	yes	no
A1KBB1	UREG_AZOSB	No assigned EC number	0.6353	0.6545	0.8695	yes	no
B0UBI3	UREG_METS4	No assigned EC number	0.6666	0.64	0.8627	yes	no
A7HHN3	UREG_ANADF	No assigned EC number	0.6826	0.7563	0.8813	yes	no
A2CDZ5	UREG_PROM3	No assigned EC number	0.6384	0.64	0.8669	yes	no
A3N2R0	UREG_ACTP2	No assigned EC number	0.5729	0.6581	0.8578	yes	no
A0K573	UREG_BURCH	No assigned EC number	0.5765	0.7090	0.9069	yes	no
A6UC29	UREG_SINMW	No assigned EC number	0.6440	0.64	0.8669	yes	no
Q3J773	UREG_NITOC	No assigned EC number	0.6043	0.6581	0.8916	yes	no
Q1BYH5	UREG_BURCA	No assigned EC number	0.5765	0.7090	0.9069	yes	no
A4XQ16	UREG_PSEMY	No assigned EC number	0.6333	0.6509	0.8774	yes	no
B1M3X4	UREG1_METRJ	No assigned EC number	0.6610	0.64	0.8585	yes	no
B7I8T8	UREG_ACIB5	No assigned EC number	0.6229	0.6581	0.8872	yes	no
B7GXU0	UREG_ACIB3	No assigned EC number	0.6229	0.6581	0.8872	yes	no
A9GP90	UREG_SORC5	No assigned EC number	0.7029	0.7309	0.6655	yes	no
B1YUF6	UREG_BURA4	No assigned EC number	0.5454	0.72	0.9209	yes	no
Q39IW6	UREG_BURS3	No assigned EC number	0.5765	0.7090	0.9069	yes	no
O54424	UREG_ACTPL	No assigned EC number	0.5677	0.6581	0.8578	yes	no
Q1H0F5	UREG_METFK	No assigned EC number	0.6571	0.6327	0.8571	yes	no
C1DMZ7	UREG_AZOVD	No assigned EC number	0.65	0.6509	0.8774	yes	no
A6VD02	UREG_PSEA7	No assigned EC number	0.6277	0.6509	0.8774	yes	no
B7V1V6	UREG_PSEA8	No assigned EC number	0.6388	0.6509	0.8774	yes	no
A4JC39	UREG_BURVG	No assigned EC number	0.5502	0.72	0.9209	yes	no
B0BRT8	UREG_ACTPJ	No assigned EC number	0.5729	0.6581	0.8578	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0004_1925	annotation not avaliable (278 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_201576.1	annotation not avaliable (837 aa)	•		•	•		•	•		0.992
	fgenesh2_kg.1__2374__AT1G21840.1	annotation not avaliable (240 aa)	•		•			•	•		0.971
	fgenesh2_kg.4__1529__AT2G35035.1	annotation not avaliable (293 aa)	•		•			•	•		0.964
	scaffold_601372.1	annotation not avaliable (1381 aa)							•		0.666
	fgenesh2_kg.4__1804__AT2G37500.1	annotation not avaliable (468 aa)				•			•		0.605
	fgenesh2_kg.1__3154__AT1G29900.1	annotation not avaliable (1183 aa)							•		0.583
	scaffold_701843.1	annotation not avaliable (495 aa)							•		0.561
	fgenesh2_kg.8__2775__AT5G66470.1	annotation not avaliable (427 aa)	•						•		0.561
	fgenesh2_kg.5__1206__AT3G48560.1	AT3G48560 (664 aa)							•		0.505
	fgenesh2_kg.5__2197__AT3G57560.1	annotation not avaliable (346 aa)							•		0.497

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
TIGR00101	199	TIGR00101, ureG, urease accessory protein UreG	1e-87
COG0378	202	COG0378, HypB, Ni2+-binding GTPase involved in reg	1e-70
pfam02492	178	pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin	4e-44
TIGR00073	208	TIGR00073, hypB, hydrogenase accessory protein Hyp	1e-14
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	2e-05
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	3e-05
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	1e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	4e-04
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	5e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	6e-04
pfam10986	161	pfam10986, DUF2796, Protein of unknown function (D	6e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	0.001
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	0.002
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.002
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	0.003
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.003
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	0.003
pfam03308	267	pfam03308, ArgK, ArgK protein	0.003

>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG

 Score =  259 bits (662), Expect = 1e-87
 Identities = 110/175 (62%), Positives = 135/175 (77%), Gaps = 1/175 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           +G+ GPVG+GKTAL+ AL + LR KY LA +TNDI+T+ED EFL++N ALP ERI  VET
Sbjct: 4   IGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVET 63

Query: 144 GGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVS 202
           GGCPH AIRED S+NL  + E+   F   +++  ESGGDNL+A FS ELAD  I++IDV+
Sbjct: 64  GGCPHTAIREDASMNLEAVAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVA 123

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
            GDKIPRKGGPGIT++DLLVINK DLA  +GADL VMERDA +MR   PFIF  +
Sbjct: 124 AGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNL 178

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel [Central intermediary metabolism, Nitrogen metabolism]. Length = 199

>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

 Score =  215 bits (551), Expect = 1e-70
 Identities = 90/180 (50%), Positives = 112/180 (62%), Gaps = 12/180 (6%)

Query: 78  NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
           N     +G+GGP G+GKTAL+    + L+D+Y +A +T DI+TKED + L +    P E 
Sbjct: 10  NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEP 66

Query: 138 IRAVETG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELAD-Y 194
           I  VETG GC H     D S+NL  +EEL   F   DLL  ES G NL   FS +L D  
Sbjct: 67  IIGVETGKGC-H----LDASMNLEAIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHL 120

Query: 195 IIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254
            + +IDV+ G+ IPRKGGPGI +ADLLVINKTDLA  +GADL VM RDA  +    P IF
Sbjct: 121 RVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIF 180

Length = 202

>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain

 Score =  147 bits (373), Expect = 4e-44
 Identities = 62/187 (33%), Positives = 85/187 (45%), Gaps = 23/187 (12%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRA 140
               + G +G+GKT L+  L +  R+   +A + ND   T  D E L   GAL    I  
Sbjct: 1   PVTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGETGIDAELLRETGAL----IVE 56

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANF-----------SR 189
           +  G       RED+S+ L  L EL    + DLL  E+ G                  S 
Sbjct: 57  LNNGCICCTL-REDLSMVLEALLELKE--RLDLLFIETTG-LACPAPVAQTFLSPELRSD 112

Query: 190 ELADYIIYIIDVSG--GDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR 247
              D ++ ++DV+   G+ IP K    I  ADL+VINKTDLA A+ ADL  +E D  R+ 
Sbjct: 113 LGLDGVVTVVDVAETEGEDIPEKAPDQIAFADLIVINKTDLAPAV-ADLEKLEADLRRLN 171

Query: 248 DGGPFIF 254
              P I 
Sbjct: 172 PEAPIIP 178

This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178

>gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 18/177 (10%)

Query: 75  RNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
              ++     +      G+GKT L+  L   L+D+  +A +  D+ TK D E L + GA 
Sbjct: 15  ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP 74

Query: 134 PEERIRAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL 191
                  + TG   H  A +          LE+L      DLL  E+ G NL      +L
Sbjct: 75  AI----QINTGKECHLDAHMVAHA------LEDLPLD-DIDLLFIENVG-NLVCPADFDL 122

Query: 192 -ADYIIYIIDVSGGDKIPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM 246
                + ++ V+ GD  P K  PG+ + ADL+VINK DLA A+G D+  M+ DA ++
Sbjct: 123 GEHMRVVLLSVTEGDDKPLKY-PGMFKEADLIVINKADLAEAVGFDVEKMKADAKKI 178

A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair]. Length = 208

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 6   HHTHDHAHHHHHDNDHDHTHEKNH-GDSTATSW 37
           HH HDH H H H++ HDH H  +H   +TA  +
Sbjct: 122 HHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEY 154

Length = 279

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTH 25
            DHH  DH H  H  +D DH H
Sbjct: 119 DDHHDDDHDHAGHEKSDEDHHH 140

Length = 311

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 1   MASHDHHTHDHAHHHHHDNDHDHTHEKNHGD 31
           M       HD  H H      D  H  +HG+
Sbjct: 114 MKGAHDDHHDDDHDHAGHEKSDEDH--HHGE 142

Length = 311

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHG 30
             +   + H H H HD+DHDH H  +HG
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHG 140

Length = 279

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDS 32
           H+HH H H+H  H  +DHDH H+  HG  
Sbjct: 169 HEHHGHSHSHSDHD-HDHDHDHDHVHGPG 196

Length = 206

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 4   HDH-HTHDHAHHHHHDNDHDHTH 25
           HDH H HDH HHH H + H H H
Sbjct: 125 HDHDHDHDHEHHHDHGHHHHHEH 147

Length = 279

>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796)

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 10/33 (30%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTAT 35
           S         H H H + HD      H D  A 
Sbjct: 79  SLFGDHDHDHHDHDHHDHHDDHEHAGHSDFHAE 111

This bacterial family of proteins has no known function. Length = 161

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 15/47 (31%)

Query: 11  HAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHE 57
           + HHH HD+DHDH HE +H                H H     H   
Sbjct: 119 NMHHHDHDHDHDHDHEHHHD---------------HGHHHHHEHGAT 150

Length = 279

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 3   SHDHHTHDHAHHHH---HDNDHDHTHEKNHG 30
            H  H+H H+ H H   HD+DH H     HG
Sbjct: 170 EHHGHSHSHSDHDHDHDHDHDHVHGPGCGHG 200

Length = 206

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 16/52 (30%)

Query: 4   HDHHT-HDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
            D  T  D A H  H++DH+H H ++ G               H   GL PH
Sbjct: 86  IDLKTLEDGASHGDHEHDHEHAHGEHDG---------------HEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 3   SHDHHTHDHAHHHHHDNDHD 22
            HDH  H+ +   HH  +++
Sbjct: 125 DHDHAGHEKSDEDHHHGEYN 144

Length = 311

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 2   ASHDHHTHDHAHHHHHDNDHDHTHEKNH 29
           ASH  H HDH H H   + H+      H
Sbjct: 95  ASHGDHEHDHEHAHGEHDGHEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 73  LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA 132
           L  N  +R F +GI G V  GK+     L   L        V  D+ T  DG F   N  
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKV--DLVTM-DG-FHYPNAV 129

Query: 133 LPEERIRA 140
           L E  + A
Sbjct: 130 LDERGLMA 137

Length = 283

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 27/181 (14%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
           RA  VGI G  G GK+ L+ AL   LR + + +A +  D  +   G      G++  +R 
Sbjct: 28  RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTG------GSILGDRT 81

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG------DNLAANFSR--- 189
           R       P A IR   S + G L  LS   +  +LL ++ G      + +    S    
Sbjct: 82  RMQRLAVDPGAFIRS--SPSRGALGGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDI 139

Query: 190 -ELADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADLAVME-RDALR 245
             +AD  + +    GGD +   + G   I  AD+ V+NK DL    GA+    E R AL 
Sbjct: 140 ANMADTFVLVTIPGGGDDLQGIKAGLMEI--ADIYVVNKADLP---GAERTARELRSALH 194

Query: 246 M 246
           +
Sbjct: 195 L 195

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.96
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.95
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.95
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.95
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.93
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.92
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.92
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.91
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.91
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.91
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.9
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.9
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.9
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.9
COG0523	323	Putative GTPases (G3E family) [General function pr	99.9
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.9
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.9
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.9
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.89
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.89
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.89
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.89
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.89
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.89
PRK10908	222	cell division protein FtsE; Provisional	99.89
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.89
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.89
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.89
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.89
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.89
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.89
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.89
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.89
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.89
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.88
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.88
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.88
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.88
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.88
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.88
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.88
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.88
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.88
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.88
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.88
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.88
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.88
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.88
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.88
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.88
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.87
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.87
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.87
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.87
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.87
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.87
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.87
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.87
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.87
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.87
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.87
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.87
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.87
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.87
COG4559	259	ABC-type hemin transport system, ATPase component	99.87
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.87
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.87
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.87
COG4988	559	CydD ABC-type transport system involved in cytochr	99.87
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.87
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.87
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.87
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.87
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.87
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.87
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.87
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.87
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.87
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.87
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.86
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.86
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	99.86
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.86
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.86
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.86
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.86
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.86
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.86
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.86
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.86
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.86
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.86
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.86
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.86
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.86
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.86
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.86
COG4987	573	CydC ABC-type transport system involved in cytochr	99.86
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.86
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.86
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.86
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.86
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.85
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.85
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.85
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.85
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.85
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.85
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.85
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.85
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.85
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.85
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.85
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.85
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.85
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.85
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.85
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.85
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.85
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.85
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.85
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.85
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.85
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.85
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.85
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.85
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.85
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.84
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.84
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.84
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.84
COG4181	228	Predicted ABC-type transport system involved in ly	99.84
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.84
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.84
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.84
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.84
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.84
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.84
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.84
cd03246	173	ABCC_Protease_Secretion This family represents the	99.84
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.84
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.84
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.84
PRK11537	318	putative GTP-binding protein YjiA; Provisional	99.84
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.84
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.84
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.84
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.84
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.84
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PLN03130	1622	ABC transporter C family member; Provisional	99.83
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	99.83
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.83
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.83
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.83
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.83
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.83
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.83
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.83
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.83
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	99.83
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.83
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.83
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.83
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.83
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.83
PLN03232	1495	ABC transporter C family member; Provisional	99.83
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.82
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.82
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.82
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.82
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.82
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.82
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.82
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.82
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.82
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.82
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.82
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.82
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.82
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.82
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.82
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.82
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.82
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.82
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.82
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.81
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.81
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.81
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.81
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.81
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.81
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.81
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.81
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.81
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.81
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.81
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.81
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.81
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK10938	490	putative molybdenum transport ATP-binding protein	99.81
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.81
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.8
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.8
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.8
PTZ00243	1560	ABC transporter; Provisional	99.8
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.79
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.79
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.79
COG1123	539	ATPase components of various ABC-type transport sy	99.79
COG1123	539	ATPase components of various ABC-type transport sy	99.78
PLN03211	659	ABC transporter G-25; Provisional	99.78
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.78
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.78
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.78
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.78
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.78
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.78
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.77
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.77
PRK13409	590	putative ATPase RIL; Provisional	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.77
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.77
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.77
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.77
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.77
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.76
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.76
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.76
COG4172	534	ABC-type uncharacterized transport system, duplica	99.76
PRK11147	635	ABC transporter ATPase component; Reviewed	99.76
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.76
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.76
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.76
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.75
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.75
PLN03073	718	ABC transporter F family; Provisional	99.75
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.75
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.75
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.74
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.73
COG0488	530	Uup ATPase components of ABC transporters with dup	99.73
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.73
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.73
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.72
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.72
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.72
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.71
PRK11147	635	ABC transporter ATPase component; Reviewed	99.71
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.69
PLN03232	1495	ABC transporter C family member; Provisional	99.69
PLN03140	1470	ABC transporter G family member; Provisional	99.68
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.68
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.68
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.67
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.67
COG4172	534	ABC-type uncharacterized transport system, duplica	99.66
PLN03130	1622	ABC transporter C family member; Provisional	99.66
PLN03073	718	ABC transporter F family; Provisional	99.66
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.65
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.64
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.64
cd03112	158	CobW_like The function of this protein family is u	99.64
PLN03140	1470	ABC transporter G family member; Provisional	99.64
PTZ00243	1560	ABC transporter; Provisional	99.63
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.61
COG0488	530	Uup ATPase components of ABC transporters with dup	99.61
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.59
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.56
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.54
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.5
PRK15494	339	era GTPase Era; Provisional	99.49
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.48
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.46
COG1159	298	Era GTPase [General function prediction only]	99.46
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.46
COG1160	444	Predicted GTPases [General function prediction onl	99.45
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.44
COG4178	604	ABC-type uncharacterized transport system, permeas	99.43
KOG0062	582	consensus ATPase component of ABC transporters wit	99.43
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.43
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.41
PRK00089	292	era GTPase Era; Reviewed	99.4
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.39
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.39
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.39
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.38
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.38
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.38
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.34
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.31
cd00881	189	GTP_translation_factor GTP translation factor fami	99.31
PRK10416	318	signal recognition particle-docking protein FtsY;	99.3
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.3
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.28
cd03114	148	ArgK-like The function of this protein family is u	99.27
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.26
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.25
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.23
COG0486	454	ThdF Predicted GTPase [General function prediction	99.22
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.22
PRK13768	253	GTPase; Provisional	99.22
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.22
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.2
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.2
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.19
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.18
PRK12298	390	obgE GTPase CgtA; Reviewed	99.18
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.18
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.16
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.16
PRK00093	435	GTP-binding protein Der; Reviewed	99.16
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.16
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.15
PRK12299	335	obgE GTPase CgtA; Reviewed	99.14
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.13
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.13
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.13
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.12
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.11
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.11
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.1
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.09
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.09
PRK14974	336	cell division protein FtsY; Provisional	99.09
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.08
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.08
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.07
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.07
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.07
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.06
PRK12296	500	obgE GTPase CgtA; Reviewed	99.06
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.06
PRK03003	472	GTP-binding protein Der; Reviewed	99.06
COG1160	444	Predicted GTPases [General function prediction onl	99.06
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.05
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.05
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.05
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.04
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.04
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.04
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.04
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.03
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.03
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.03
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.03
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.02
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.02
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.02
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.02
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.02
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.01
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.01
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.01
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.0
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	99.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.0
PRK12297	424	obgE GTPase CgtA; Reviewed	99.0
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.99
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.99
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.99
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.99
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.98
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.98
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.98
PRK04213	201	GTP-binding protein; Provisional	98.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.98
PRK09866	741	hypothetical protein; Provisional	98.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.97
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.97
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.94
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.94
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.94
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.94
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.94
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.94
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.93

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.96  E-value=9.6e-30  Score=223.94  Aligned_cols=145  Identities=26%  Similarity=0.272  Sum_probs=124.8

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |+++..+.+.++...+|++++|+||||||||||||+|+|+++|. |.|.+++.++.+....++.+.++|+||.+.     
T Consensus        12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~   91 (258)
T COG1120          12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL   91 (258)
T ss_pred             ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence            33466777777777889999999999999999999999999998 999999999999999999999999999852     


Q ss_pred             ---HHHHhcCCCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          139 ---RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 ---~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                         +.+.+|..++...     .++.+.+.++|+.+......++.+.+ ||||+||+.|||||+ +|+|++|| ||+.+|.
T Consensus        92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi  171 (258)
T COG1120          92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI  171 (258)
T ss_pred             EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence               5667787776543     34555677789988888888888888 999999999999999 89999999 9999986


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       172 ~~  173 (258)
T COG1120         172 AH  173 (258)
T ss_pred             HH
Confidence            43

>TIGR00101 ureG urease accessory protein UreG

Probab=99.95  E-value=2.7e-28  Score=209.27  Aligned_cols=189  Identities=58%  Similarity=0.942  Sum_probs=155.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L  162 (275)
                      .++|+||+|||||||++.+++.+.+..++.+..+++....+.++.++.++++|+....+..++|+||..+.++.....+|
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~L   82 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEAV   82 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHHH
Confidence            68999999999999999999988877668889999887777788888899888766555689999998877776556666


Q ss_pred             HHhhc-ccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHHHHHH
Q 023913          163 EELSN-LFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       163 ~~l~~-~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      ..+.. ....|.+++||.|..+...+...+.+..|+++|++++++.+.+...|+..||++++||+|+.+...++++.+.+
T Consensus        83 ~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~  162 (199)
T TIGR00101        83 AEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMER  162 (199)
T ss_pred             HHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHHH
Confidence            66542 34689999998885433333344457789999999998877665679999999999999998654467888999


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .++++||.++++++|+++|+|+++|+++..
T Consensus       163 ~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~  192 (199)
T TIGR00101       163 DAKKMRGEKPFIFTNLKTKEGLDTVIDWIE  192 (199)
T ss_pred             HHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.95  E-value=2e-28  Score=204.94  Aligned_cols=180  Identities=48%  Similarity=0.715  Sum_probs=153.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhc-CCCccchHHHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHAAIREDISINLG  160 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~-~~~~~~~~~~~~~~~~  160 (275)
                      ..+++.||+|||||||+..++..++...+++++.+|+.+..|+++.++.   +..+...++++ +| +    .+...+..
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~C-H----~da~m~~~   85 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGC-H----LDASMNLE   85 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCcc-C----CcHHHHHH
Confidence            5899999999999999999999888778999999999987777776662   34445556677 77 4    34455666


Q ss_pred             HHHHhhcccc-cccccccChhHHHHHHHHHHhcC-ceEEEEeCCCCCCcccc-ccccccccCEEEEecCCCCccchhhHH
Q 023913          161 PLEELSNLFK-ADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRK-GGPGITQADLLVINKTDLASAIGADLA  237 (275)
Q Consensus       161 ~L~~l~~~~~-~d~~~~eS~G~~q~~~laral~~-~~vlllD~t~g~d~~~~-~~~~i~~adiivlNK~Dl~~~~~~~~~  237 (275)
                      +++++..+.. .|.+++||+| +..+.++..|.+ -.|+++|.+.|++.|.| ++.+++ ||++||||+||++..+++++
T Consensus        86 ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~-aDllVInK~DLa~~v~~dle  163 (202)
T COG0378          86 AIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK-ADLLVINKTDLAPYVGADLE  163 (202)
T ss_pred             HHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeE-eeEEEEehHHhHHHhCccHH
Confidence            7777766543 7999999999 777888888885 99999999999999999 555555 99999999999999889999


Q ss_pred             HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+.++++||.+||+++|.++|+|+++|+++..
T Consensus       164 vm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~  197 (202)
T COG0378         164 VMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE  197 (202)
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence            9999999999999999999999999999998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=2.2e-28  Score=207.51  Aligned_cols=145  Identities=21%  Similarity=0.146  Sum_probs=117.6

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-ChHHHHHhccccCchhHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRAV  141 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~~  141 (275)
                      +|++.+++.+.+....+|++++|+||+||||||||+||.++.+++ |+|.+.+.++... +...+++++|+|||.+..+.
T Consensus        11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP   90 (240)
T COG1126          11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP   90 (240)
T ss_pred             EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence            677888888888888999999999999999999999999999998 9999999766433 34567889999999875333


Q ss_pred             HhcCCCccch----------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          142 ETGGCPHAAI----------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       142 ~~~~~~~~~~----------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      .++...++..          .+....+.+.|+.+++.+..+.++.. ||||+||++|||||+ +|+++|+| ||+.+|+-
T Consensus        91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPE  170 (240)
T COG1126          91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE  170 (240)
T ss_pred             cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHH
Confidence            3222222221          22335567788899888888888888 999999999999999 99999999 88888863

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.6e-27  Score=209.06  Aligned_cols=148  Identities=19%  Similarity=0.192  Sum_probs=117.5

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|.+   . +++.+.++...+|++++|+||||||||||+|+|+|+++|. |+|.+.+.+.....+   ..+||||
T Consensus         8 ~nl~v~y~~---~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYV   80 (254)
T COG1121           8 ENLTVSYGN---R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYV   80 (254)
T ss_pred             eeeEEEECC---E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEc
Confidence            344555554   4 5666777778889999999999999999999999999998 999999877654322   3579999


Q ss_pred             Cchh----------HHHHHhcCCCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEER----------IRAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      ||..          .+++.++......+     +.+.+.+.++|++++.....++.+.+ ||||+||+.|||||+ +|++
T Consensus        81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l  160 (254)
T COG1121          81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL  160 (254)
T ss_pred             CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence            9964          14455554433321     34456778899999999899999999 999999999999999 8999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +||| |++|.|...
T Consensus       161 llLDEP~~gvD~~~  174 (254)
T COG1121         161 LLLDEPFTGVDVAG  174 (254)
T ss_pred             EEecCCcccCCHHH
Confidence            9999 899998654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.94  E-value=1.8e-26  Score=206.57  Aligned_cols=198  Identities=21%  Similarity=0.199  Sum_probs=156.5

Q ss_pred             ccCCCCCCCCCCccccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913           59 IYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      +...|   ++.+..++..|..+ +.+++|+|+|||||||||+.+++.+....++.++.+|+.+..|+++.+..|. +   
T Consensus        84 il~~n---~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~-p---  156 (290)
T PRK10463         84 VLDKN---NRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT-P---  156 (290)
T ss_pred             HHHHh---HHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC-c---
Confidence            44455   66777788888765 9999999999999999999999988777788899999987777777766553 1   


Q ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccc
Q 023913          138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGI  215 (275)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i  215 (275)
                      ... ..+||.||.....+..   ++..+. ....+.+++|+.|. .-+.  .+.+. ...++|++.+.|++.+.+++.||
T Consensus       157 vvq-i~tG~~Chl~a~mv~~---Al~~L~-~~~~d~liIEnvGnLvcPa--~fdlge~~~v~vlsV~eg~dkplKyp~~f  229 (290)
T PRK10463        157 AIQ-VNTGKGCHLDAQMIAD---AAPRLP-LDDNGILFIENVGNLVCPA--SFDLGEKHKVAVLSVTEGEDKPLKYPHMF  229 (290)
T ss_pred             EEE-ecCCCCCcCcHHHHHH---HHHHHh-hcCCcEEEEECCCCccCCC--ccchhhceeEEEEECccccccchhccchh
Confidence            111 2567888876655544   455543 34569999998884 1122  22344 56789999999999899999999


Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +.||++||||+|+++...++++.+.+.+++++|.++|+++|+++|+|+++|++++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L  284 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWL  284 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence            9999999999999986456788899999999999999999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.93  E-value=6.3e-26  Score=196.65  Aligned_cols=141  Identities=21%  Similarity=0.169  Sum_probs=115.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE  142 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~  142 (275)
                      +|++++++.+.++...+|++++|+||+||||||+|++|.+++.|+ |+|.+++.++.+.+..+++++|||+-|..     
T Consensus        10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqi-----   84 (309)
T COG1125          10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI-----   84 (309)
T ss_pred             hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhc-----
Confidence            566788888888888999999999999999999999999999999 99999999999999999999999998874     


Q ss_pred             hcCCCccchH--------------HH-HHHHHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          143 TGGCPHAAIR--------------ED-ISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       143 ~~~~~~~~~~--------------~~-~~~~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                       +.+|+.+..              +. ..++.+.|+.+++..  ..++++.| ||||+||+.+||||+ +|+|+|+| |.
T Consensus        85 -gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF  163 (309)
T COG1125          85 -GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF  163 (309)
T ss_pred             -ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence             223333221              11 233455666666643  57888888 999999999999999 99999999 66


Q ss_pred             CCCCcccc
Q 023913          203 GGDKIPRK  210 (275)
Q Consensus       203 ~g~d~~~~  210 (275)
                      ..+|+..+
T Consensus       164 gALDpI~R  171 (309)
T COG1125         164 GALDPITR  171 (309)
T ss_pred             cccChhhH
Confidence            77776543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=7.4e-26  Score=205.01  Aligned_cols=146  Identities=21%  Similarity=0.158  Sum_probs=112.7

Q ss_pred             CCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913           64 YFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV  141 (275)
Q Consensus        64 ~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~  141 (275)
                      +|+ +..++.+.++...+|++++|+||||||||||||+|+|+++|+ |+|.+.+.++... ..+.++++||+||++..+.
T Consensus        13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~   91 (293)
T COG1131          13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYP   91 (293)
T ss_pred             EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCc
Confidence            455 467777777788889999999999999999999999999999 9999999887654 5677889999999974222


Q ss_pred             HhcCCCccch---------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~---------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+++..+..+         ......+.+.++.+.+....+..+.. |+||+||+.||.+|+ +|.++||| |++|+|+..
T Consensus        92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~  171 (293)
T COG1131          92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES  171 (293)
T ss_pred             cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence            2222221111         11223455677777776544555666 999999999999999 99999999 999999765


Q ss_pred             c
Q 023913          210 K  210 (275)
Q Consensus       210 ~  210 (275)
                      .
T Consensus       172 ~  172 (293)
T COG1131         172 R  172 (293)
T ss_pred             H
Confidence            4

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=7.2e-26  Score=196.61  Aligned_cols=142  Identities=18%  Similarity=0.064  Sum_probs=111.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      .|+...++.+.++...+||+++|+||+|||||||||+|+|+.+|+ |+|.+.+..+...     ...++|+||+..    
T Consensus        12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW   86 (248)
T COG1116          12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPW   86 (248)
T ss_pred             EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccch
Confidence            345566777777778889999999999999999999999999999 9999998776322     246899999863    


Q ss_pred             ----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                          +|+.++.... ..-.+..+.+.+.|+.+++....+..+.+ ||||+||++|||||+ +|+|+++| |...+|...+
T Consensus        87 ~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR  166 (248)
T COG1116          87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR  166 (248)
T ss_pred             hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHH
Confidence                3333332221 12222334677789999888888888999 999999999999999 99999999 7777776543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=7.4e-26  Score=188.54  Aligned_cols=151  Identities=17%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRN  130 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~i  130 (275)
                      ++|+..|++   +.+++.+.++...+||++-|+||+|||||||||+|++..+|+ |+|.+.+.++.....   .-++++|
T Consensus         5 ~~V~k~Y~~---g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I   81 (223)
T COG2884           5 ENVSKAYPG---GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI   81 (223)
T ss_pred             hhhhhhcCC---CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence            467778888   766788888888899999999999999999999999999999 999999999987643   3477899


Q ss_pred             cccCchhH--------HHHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          131 GALPEERI--------RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       131 g~v~q~~~--------~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      |+|||+.-        +++.+....... -.+....+.+.|+.+++.++....+.+ |+|++||++||||++ +|.++|.
T Consensus        82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA  161 (223)
T COG2884          82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA  161 (223)
T ss_pred             eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence            99999963        233222211111 122234566688888888888888888 999999999999999 8999999


Q ss_pred             e-CCCCCCcc
Q 023913          200 D-VSGGDKIP  208 (275)
Q Consensus       200 D-~t~g~d~~  208 (275)
                      | ||..+|+.
T Consensus       162 DEPTGNLDp~  171 (223)
T COG2884         162 DEPTGNLDPD  171 (223)
T ss_pred             cCCCCCCChH
Confidence            9 66667754

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-25  Score=188.20  Aligned_cols=186  Identities=18%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913           64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV  141 (275)
Q Consensus        64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~  141 (275)
                      +|+... ++.++++..++|++++|+|+|||||||+|++|++++.|+ |+|.+++.|... .+...+++||+++.+...+.
T Consensus        10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~   88 (245)
T COG4555          10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYA   88 (245)
T ss_pred             hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhh
Confidence            455554 677777778889999999999999999999999999999 999999998754 45678889999986542222


Q ss_pred             HhcCCCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .++...+.         .-.+..+++.+..+.|.+....++.+.+ |.||+||+.|||||+ +|.++|+| |++|+|+..
T Consensus        89 RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~  168 (245)
T COG4555          89 RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT  168 (245)
T ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHH
Confidence            22221111         1111123334455666667778888888 999999999999999 89999999 999999754


Q ss_pred             cc-----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913          210 KG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF  254 (275)
Q Consensus       210 ~~-----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~  254 (275)
                      ..     ..|.+.....|+=    .++...+++.+.+.+--+..+-.++.
T Consensus       169 ~r~~~dfi~q~k~egr~viF----SSH~m~EvealCDrvivlh~Gevv~~  214 (245)
T COG4555         169 RRKFHDFIKQLKNEGRAVIF----SSHIMQEVEALCDRVIVLHKGEVVLE  214 (245)
T ss_pred             HHHHHHHHHHhhcCCcEEEE----ecccHHHHHHhhheEEEEecCcEEEc
Confidence            32     2334443433331    23433556666665555555444443

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.8e-25  Score=213.87  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=123.3

Q ss_pred             CCCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH
Q 023913           50 GLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE  125 (275)
Q Consensus        50 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~  125 (275)
                      ..+|.   .+|.|.||.+ ++.+++.+.++...+|++++|+||+|+||||+.++|..+|.|+ |+|.+++.|+.+.+...
T Consensus       461 ~~~G~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~  539 (716)
T KOG0058|consen  461 HLQGVIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY  539 (716)
T ss_pred             cccceEEEEEeeeecCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHH
Confidence            46666   9999999992 1223444555566779999999999999999999999999999 99999999999999999


Q ss_pred             HHHhccccCchhH------HHHHhcCCCccchHHHHHHH-HHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHh
Q 023913          126 FLMRNGALPEERI------RAVETGGCPHAAIREDISIN-LGPLEELS--NLFKADLLLCE-----SGGDNLAANFSREL  191 (275)
Q Consensus       126 ~~~~ig~v~q~~~------~~~~~~~~~~~~~~~~~~~~-~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral  191 (275)
                      ++++||+|.|+|.      ..+...|+..++..+....+ +....+|.  ...+++..++|     |||||||++|||||
T Consensus       540 lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL  619 (716)
T KOG0058|consen  540 LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL  619 (716)
T ss_pred             HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence            9999999999984      22334455565543322111 11122221  24578889998     99999999999999


Q ss_pred             c-CceEEEEe-CCCCCCcccc
Q 023913          192 A-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       192 ~-~~~vlllD-~t~g~d~~~~  210 (275)
                      + +|.|+||| +|+.+|....
T Consensus       620 lr~P~VLILDEATSALDaeSE  640 (716)
T KOG0058|consen  620 LRNPRVLILDEATSALDAESE  640 (716)
T ss_pred             hcCCCEEEEechhhhcchhhH
Confidence            9 99999999 7878886543

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.92  E-value=5.2e-25  Score=218.87  Aligned_cols=182  Identities=18%  Similarity=0.151  Sum_probs=137.3

Q ss_pred             cccCCCCCCC---ccccccCCCCCCCCCCccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           45 YHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        45 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      ....+..+|.   +++.|.|..   +.+.++++.++ .++|++++|+|++|||||||+|+|+|+++|+ |+|.+++.|+.
T Consensus       462 ~~~~~~~~g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~  538 (709)
T COG2274         462 LIHLPKLQGEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN  538 (709)
T ss_pred             cccccccCceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence            4556667777   888999988   65655555555 5669999999999999999999999999998 99999999999


Q ss_pred             CCChHHHHHhccccCchhH------HHHHhcCCCccchHHHH-HHHHHHHHHhh--ccccccccccc-----ChhHHHHH
Q 023913          120 TKEDGEFLMRNGALPEERI------RAVETGGCPHAAIREDI-SINLGPLEELS--NLFKADLLLCE-----SGGDNLAA  185 (275)
Q Consensus       120 ~~~~~~~~~~ig~v~q~~~------~~~~~~~~~~~~~~~~~-~~~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~  185 (275)
                      ..+...+++.+|||+|++.      +.+...+.+.++..+-. +.....+.++.  ...+++..+.|     |||||||+
T Consensus       539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl  618 (709)
T COG2274         539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL  618 (709)
T ss_pred             hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence            9999999999999999974      22223344555533322 12222333332  34578889988     99999999


Q ss_pred             HHHHHhc-CceEEEEe-CCCCCCccccc---------------------cccccccCEEEEecCCCC
Q 023913          186 NFSRELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLA  229 (275)
Q Consensus       186 ~laral~-~~~vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK~Dl~  229 (275)
                      +|||+++ +|+|+||| ||+.+|...+.                     ...++.||.|++.+--.+
T Consensus       619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gki  685 (709)
T COG2274         619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKI  685 (709)
T ss_pred             HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCce
Confidence            9999999 99999999 78888864431                     123567887776664444

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.3e-25  Score=190.42  Aligned_cols=151  Identities=20%  Similarity=0.138  Sum_probs=121.1

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhcc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNG  131 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig  131 (275)
                      ++.-.||+   +.+++.++++...+||+++|+|++||||||||++|.|+.+|+ |+|.+.+.++.....   ..+++++|
T Consensus         8 nl~k~yp~---~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG   84 (258)
T COG3638           8 NLSKTYPG---GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG   84 (258)
T ss_pred             eeeeecCC---CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence            44556776   788888888888999999999999999999999999999999 999999988877653   34567899


Q ss_pred             ccCchhH--------HHHHhcCCCccch---------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-
Q 023913          132 ALPEERI--------RAVETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-  192 (275)
Q Consensus       132 ~v~q~~~--------~~~~~~~~~~~~~---------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-  192 (275)
                      |++|.+.        +++..+...+.+.         +++...++++|++++..+..-..... ||||+||++|||+|+ 
T Consensus        85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q  164 (258)
T COG3638          85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ  164 (258)
T ss_pred             eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence            9999873        4555554433321         45556677888888776655544555 999999999999999 


Q ss_pred             CceEEEEe-CCCCCCccc
Q 023913          193 DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 ~~~vlllD-~t~g~d~~~  209 (275)
                      +|+|+|.| |.+.+|+..
T Consensus       165 ~pkiILADEPvasLDp~~  182 (258)
T COG3638         165 QPKIILADEPVASLDPES  182 (258)
T ss_pred             CCCEEecCCcccccChhh
Confidence            89999999 888998754

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3e-25  Score=191.13  Aligned_cols=146  Identities=24%  Similarity=0.189  Sum_probs=116.2

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR  139 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~  139 (275)
                      +|+++.+..+.++...+|++++|+|++|||||||||+|+|+++|+ |+|.+.+.++.+.+..   ++++++|++||....
T Consensus        17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL   96 (263)
T COG1127          17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL   96 (263)
T ss_pred             ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence            677888888888888999999999999999999999999999999 9999999998877543   456789999998642


Q ss_pred             --------HHHhcCCCccchHHHH--HHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          140 --------AVETGGCPHAAIREDI--SINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       140 --------~~~~~~~~~~~~~~~~--~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                              |+.+....+..+.+..  ..+...|+.+++... .++.+.| ||||++|++||||++ +|.++++| ||+|+
T Consensus        97 FssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGL  176 (263)
T COG1127          97 FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGL  176 (263)
T ss_pred             ccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence                    3322222222222221  334456677777766 7888899 999999999999999 99999999 99999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |+..
T Consensus       177 DPI~  180 (263)
T COG1127         177 DPIS  180 (263)
T ss_pred             Ccch
Confidence            9754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=8.1e-25  Score=189.30  Aligned_cols=140  Identities=19%  Similarity=0.074  Sum_probs=101.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI-----  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~-----  138 (275)
                      .++.+.++...+||+++|+||+||||||||++|.|+.+|+ |.+.+.+.++...+..+   + ++.+||+||+..     
T Consensus        19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l   98 (226)
T COG1136          19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL   98 (226)
T ss_pred             EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence            3555666667889999999999999999999999999999 99999998888765432   3 346999999862     


Q ss_pred             ---HHHHhcCCCccchH-HHHHHHHHHHHHhhcccccc-ccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ---RAVETGGCPHAAIR-EDISINLGPLEELSNLFKAD-LLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ---~~~~~~~~~~~~~~-~~~~~~~~~L~~l~~~~~~d-~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                         +++.+......... .........++.++..+... ..+.+ ||||+||++|||||+ +|.+++.| ||..+|..
T Consensus        99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~  176 (226)
T COG1136          99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK  176 (226)
T ss_pred             CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence               33332111100001 11223334555556654444 66777 999999999999999 89999999 77777754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=4.4e-25  Score=202.33  Aligned_cols=143  Identities=17%  Similarity=0.072  Sum_probs=115.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      .|++..++.+.++...+||+++|+||+||||||||++|+|+..|+ |+|.+.+.++....+.  .|.+|+|||+-.    
T Consensus        14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPH   91 (352)
T COG3842          14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPH   91 (352)
T ss_pred             ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCC
Confidence            677777888888888999999999999999999999999999999 9999999999876543  578999999852    


Q ss_pred             ----HHHHhcCCCccchH-H-HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ----RAVETGGCPHAAIR-E-DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ----~~~~~~~~~~~~~~-~-~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                          +|+.++........ + ...++.++|+.+.+....++.+.+ ||||+||+++||||+ +|.|+||| |.+.+|..
T Consensus        92 ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k  170 (352)
T COG3842          92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK  170 (352)
T ss_pred             CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence                44445444221111 2 224566778888777778888888 999999999999999 99999999 77777754

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1e-24  Score=193.80  Aligned_cols=141  Identities=18%  Similarity=0.060  Sum_probs=111.4

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~-----  139 (275)
                      .++.++++...+|+++||+|++|||||||++++.++.+|+ |+|.+++.++...+..   .++++||++||.+..     
T Consensus        20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT   99 (339)
T COG1135          20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT   99 (339)
T ss_pred             eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence            3555666777889999999999999999999999999999 9999999888877644   456789999999742     


Q ss_pred             ---HHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 ---AVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ---~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         ++.+....... -.+...++.+.|+.+++.++.+.++.+ ||||+||++|||||+ +|+|+|.| +|+.+|+..
T Consensus       100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T  176 (339)
T COG1135         100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET  176 (339)
T ss_pred             HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence               22221111111 122335567788888888888888888 999999999999999 99999999 788888643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.91  E-value=6.6e-24  Score=193.47  Aligned_cols=145  Identities=19%  Similarity=0.156  Sum_probs=107.7

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+||+||++.     
T Consensus        17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~~   95 (306)
T PRK13537         17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR-ARHARQRVGVVPQFDNLDPDF   95 (306)
T ss_pred             ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc-hHHHHhcEEEEeccCcCCCCC
Confidence            44455666777777889999999999999999999999999998 9999999887543 3456778999999863     


Q ss_pred             ---HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 ---RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ---~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                         +++.+ .........+....+.+.++.+......+..+.. |+||+||++||++|+ +|+++||| |++|+|+..+
T Consensus        96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~  174 (306)
T PRK13537         96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR  174 (306)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence               22221 1111111111122334566666666666777777 999999999999999 99999999 9999998654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.91  E-value=9.5e-25  Score=199.14  Aligned_cols=143  Identities=13%  Similarity=-0.001  Sum_probs=110.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE  142 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~  142 (275)
                      +|++..++.+.++...+||+++|+||+|||||||||+|+|+.+|+ |+|.+.+.++....+.  .|++++|||+...+..
T Consensus        12 ~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~iamVFQ~yALyPh   89 (338)
T COG3839          12 SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIAMVFQNYALYPH   89 (338)
T ss_pred             EcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEEEEeCCccccCC
Confidence            444444666677777889999999999999999999999999999 9999999999887664  3789999998643222


Q ss_pred             --------hcCCCccchHHH-HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          143 --------TGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       143 --------~~~~~~~~~~~~-~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                              ++.......++. .+++.+..+.+...+..++.+.+ ||||+||+++|||++ +|.++|+| |.+.+|..
T Consensus        90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~  167 (338)
T COG3839          90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK  167 (338)
T ss_pred             CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence                    222111111222 24455567777777788888888 999999999999999 99999999 77777754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.90  E-value=2.2e-24  Score=186.70  Aligned_cols=151  Identities=15%  Similarity=0.056  Sum_probs=106.0

Q ss_pred             cccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhc
Q 023913           56 HEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRN  130 (275)
Q Consensus        56 ~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~i  130 (275)
                      +..+.|++   .. .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.+
T Consensus         6 ~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   82 (216)
T TIGR00960         6 QVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHI   82 (216)
T ss_pred             EEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhc
Confidence            34455544   32 3555666666889999999999999999999999999998 9999988776543322   356789


Q ss_pred             cccCchhHHH--------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          131 GALPEERIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       131 g~v~q~~~~~--------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      +|++|++..+        +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+
T Consensus        83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll  162 (216)
T TIGR00960        83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA  162 (216)
T ss_pred             eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999986311        11110000 00111123345566776665555666666 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | |++++|...
T Consensus       163 DEPt~~LD~~~  173 (216)
T TIGR00960       163 DEPTGNLDPEL  173 (216)
T ss_pred             eCCCCcCCHHH
Confidence            9 899988654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.90  E-value=1.3e-23  Score=193.98  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=108.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      +|++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++... ....++.+||+||++.    
T Consensus        50 ~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~~~~~~  128 (340)
T PRK13536         50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFDNLDLE  128 (340)
T ss_pred             EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCccCCCC
Confidence            344556666777777889999999999999999999999999998 9999999887543 3456678999999852    


Q ss_pred             ----HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 ----RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ----~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                          +++.+ .........+......+.++.+......+..+.+ |+||+||+.||++|+ +|+++||| |++|+|+...
T Consensus       129 ~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r  208 (340)
T PRK13536        129 FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR  208 (340)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence                22221 1111111111122334456666666566777777 999999999999999 89999999 9999997653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=3.5e-24  Score=187.72  Aligned_cols=152  Identities=21%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC-CChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~-~~~~~~~~~ig~  132 (275)
                      .+..|.|++   +..++.+.++...+|+.++|+|+||||||||+++|+|+++|+ |.|.+.+.+... ....++++++||
T Consensus         7 ~~l~~~y~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~   83 (235)
T COG1122           7 ENLSFRYPG---RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGL   83 (235)
T ss_pred             EEEEEEcCC---CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEE
Confidence            345677777   434455555666779999999999999999999999999999 999888877663 456778899999


Q ss_pred             cCchhHH---------HHHhcCCCccch--HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          133 LPEERIR---------AVETGGCPHAAI--REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       133 v~q~~~~---------~~~~~~~~~~~~--~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      ++|++..         .+.++ +.+...  .+...++.++++.++.....++.+.+ |+||+||++||.+|+ +|.++|+
T Consensus        84 VfQnpd~q~~~~tV~~evafg-~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL  162 (235)
T COG1122          84 VFQNPDDQLFGPTVEDEVAFG-LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL  162 (235)
T ss_pred             EEECcccccccCcHHHHHhhc-hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence            9999842         22233 222222  22335566678888777667777777 999999999999999 9999999


Q ss_pred             e-CCCCCCcccc
Q 023913          200 D-VSGGDKIPRK  210 (275)
Q Consensus       200 D-~t~g~d~~~~  210 (275)
                      | ||+++|...+
T Consensus       163 DEPta~LD~~~~  174 (235)
T COG1122         163 DEPTAGLDPKGR  174 (235)
T ss_pred             cCCCCCCCHHHH
Confidence            9 8999997653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.90  E-value=7.5e-24  Score=185.72  Aligned_cols=143  Identities=24%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~-----  138 (275)
                      +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|++|++.     
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (235)
T cd03261          13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL   92 (235)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence            44566666667889999999999999999999999999998 999998887755432   345667999999852     


Q ss_pred             ---HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 ---RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ---~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                         +++.+....  .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...+
T Consensus        93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~  172 (235)
T cd03261          93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS  172 (235)
T ss_pred             cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence               122221111  111111123344566777665555666677 999999999999999 99999999 9999997643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.90  E-value=3.5e-24  Score=195.49  Aligned_cols=180  Identities=23%  Similarity=0.240  Sum_probs=141.3

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hH-HHHHhccccCchhHHHH-HhcCCCccchHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DG-EFLMRNGALPEERIRAV-ETGGCPHAAIREDISIN  158 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~-~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~~~  158 (275)
                      +++.|.|+.|||||||||.|+.... ..+++++.|++++.. |+ .+...      ...+.. ..+||.||+.+.++...
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~~~~l~~------~~e~~~El~nGCICCT~r~dl~~~   74 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDGGALLSD------TGEEVVELTNGCICCTVRDDLLPA   74 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccC-CCcEEEEEecCccccccCCCcccc------CCccEEEeCCceEEEeccchhHHH
Confidence            6899999999999999999998743 468999999999874 42 22221      112223 37899999999888665


Q ss_pred             HHHHHHhhcccccccccccChhHHHHHHHHHHhc-----------CceEEEEeCCCCCCc----cccccccccccCEEEE
Q 023913          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKI----PRKGGPGITQADLLVI  223 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-----------~~~vlllD~t~g~d~----~~~~~~~i~~adiivl  223 (275)
                      ...|..  .+..+|++++|+.|..-+..++.++.           ++.|.++|+.+....    ......|+.+||+||+
T Consensus        75 ~~~L~~--~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivl  152 (323)
T COG0523          75 LERLLR--RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVL  152 (323)
T ss_pred             HHHHHh--ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEE
Confidence            656655  34559999999999987777776642           568999998776542    3456789999999999


Q ss_pred             ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccccee
Q 023913          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYI  273 (275)
Q Consensus       224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~~  273 (275)
                      ||+|++++  +.++++++.++++||.++|+.++. ......++++...|.
T Consensus       153 NK~Dlv~~--~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~~~~~  199 (323)
T COG0523         153 NKTDLVDA--EELEALEARLRKLNPRARIIETSY-GDVDLAELLDEGLFD  199 (323)
T ss_pred             ecccCCCH--HHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcccccc
Confidence            99999998  568999999999999999999886 667777888776554

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.90  E-value=1.1e-23  Score=191.71  Aligned_cols=144  Identities=19%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.     
T Consensus         3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~   81 (302)
T TIGR01188         3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDL   81 (302)
T ss_pred             eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCC
Confidence            44555666666667889999999999999999999999999998 999999887754 33456678999999852     


Q ss_pred             ---HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.+... ......+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|+..
T Consensus        82 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  159 (302)
T TIGR01188        82 TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT  159 (302)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence               12211110 0011111122345567777666556777777 999999999999999 89999999 999998754

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1e-23  Score=180.91  Aligned_cols=142  Identities=19%  Similarity=0.150  Sum_probs=105.9

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~---  138 (275)
                      +|+..+++..+++...+|++++|+|+|||||||||++|+|+.++. |+|.+.+.|+....+.++.+ .++|+||.+.   
T Consensus        12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~   91 (237)
T COG0410          12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP   91 (237)
T ss_pred             cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence            677888888888889999999999999999999999999999997 99999999998887666554 6999999863   


Q ss_pred             -----HHHHhcCCCccc--hH-HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          139 -----RAVETGGCPHAA--IR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 -----~~~~~~~~~~~~--~~-~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                           +|+.++......  .. .+...+.+.+-.+  ....+..-.. |||++|.++|||||+ +|++++|| |+.|+.+
T Consensus        92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~L--ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP  169 (237)
T COG0410          92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRL--KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP  169 (237)
T ss_pred             hCcHHHHHhhhhhcccccccccccHHHHHHHChhH--HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCH
Confidence                 444444333321  11 1122222221111  2233444444 999999999999999 99999999 8888764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=9.5e-24  Score=178.95  Aligned_cols=147  Identities=17%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCc
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPE  135 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q  135 (275)
                      +|++.+++.+++.-..++.+++|+||+||||||||+++..+...      +|+|.+.+.++...  +..++|+++|+|||
T Consensus        16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ   95 (253)
T COG1117          16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ   95 (253)
T ss_pred             EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence            67778889899888899999999999999999999999997652      28999999998764  57789999999999


Q ss_pred             hhH-------HHHHhcCCCccchHHHH-HHHHHHHHHhhccc----ccccc-cccChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          136 ERI-------RAVETGGCPHAAIREDI-SINLGPLEELSNLF----KADLL-LCESGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       136 ~~~-------~~~~~~~~~~~~~~~~~-~~~~~~L~~l~~~~----~~d~~-~~eS~G~~q~~~laral~-~~~vlllD-  200 (275)
                      .+.       +++.++...+......+ ..+...|....++.    .++.- +.-||||+||++|||+|+ +|.|+|+| 
T Consensus        96 kPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDE  175 (253)
T COG1117          96 KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDE  175 (253)
T ss_pred             CCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecC
Confidence            873       44445433332221222 12222333222221    22221 222999999999999999 99999999 


Q ss_pred             CCCCCCcccc
Q 023913          201 VSGGDKIPRK  210 (275)
Q Consensus       201 ~t~g~d~~~~  210 (275)
                      |++.+|+.+.
T Consensus       176 PtSALDPIsT  185 (253)
T COG1117         176 PTSALDPIST  185 (253)
T ss_pred             cccccCchhH
Confidence            8888998653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=2e-23  Score=177.31  Aligned_cols=145  Identities=17%  Similarity=0.041  Sum_probs=102.6

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccccCchhH---
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~---  138 (275)
                      |++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...  ....+++.++|++|++.   
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL   81 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence            34555666666667889999999999999999999999999998 9999988776421  12345667999999852   


Q ss_pred             ------HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ------~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                            +++.+... ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus        82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  161 (190)
T TIGR01166        82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA  161 (190)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence                  11111100 0011111112334456666555556666777 999999999999999 89999999 88888864


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       162 ~  162 (190)
T TIGR01166       162 G  162 (190)
T ss_pred             H
Confidence            3

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.90  E-value=6.8e-24  Score=182.91  Aligned_cols=142  Identities=19%  Similarity=0.048  Sum_probs=101.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HHHhcC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AVETGG  145 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~~~~~  145 (275)
                      ..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.. ......
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~   93 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV   93 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence            34555555566789999999999999999999999999998 9999988877654445566789999998521 111110


Q ss_pred             CCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          146 CPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       146 ~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.         ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~  169 (211)
T cd03225          94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG  169 (211)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            0000         0111112334456666555455666667 999999999999999 89999999 899988654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.90  E-value=1.3e-23  Score=197.54  Aligned_cols=143  Identities=22%  Similarity=0.225  Sum_probs=111.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++......++++++||++|++.       
T Consensus        15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv   94 (402)
T PRK09536         15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV   94 (402)
T ss_pred             CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence            455666666677889999999999999999999999999998 999999988877666777888999999852       


Q ss_pred             -HHHHhcCCCcc---c--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~---~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++..++.   .  ...+...+.+.++.+......++.+.+ |+||+||+.|||+|+ +|+++||| |++++|...
T Consensus        95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~  174 (402)
T PRK09536         95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH  174 (402)
T ss_pred             HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence             33334332221   0  122334455677777766666777777 999999999999999 89999999 999998753

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.90  E-value=7.2e-24  Score=183.12  Aligned_cols=143  Identities=17%  Similarity=0.098  Sum_probs=101.9

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHHHHH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRAVE  142 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~~~  142 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++..+..
T Consensus        14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (214)
T TIGR02673        14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD   93 (214)
T ss_pred             CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence            344555666666889999999999999999999999999998 9999988877654322   345679999998632111


Q ss_pred             hcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 TGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 ~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .....+         .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~  172 (214)
T TIGR02673        94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL  172 (214)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence            110000         00111112334566666555555666666 999999999999999 89999999 888988654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=1.4e-24  Score=182.22  Aligned_cols=147  Identities=20%  Similarity=0.136  Sum_probs=112.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRAV  141 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~~  141 (275)
                      +|..++++.++++...+||+|+|+|||||||||.+.+++|+.+|+ |+|.+++.|+...+-..+. ..+||+||++..+-
T Consensus        13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr   92 (243)
T COG1137          13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR   92 (243)
T ss_pred             hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence            788899999999999999999999999999999999999999999 9999999999877644433 46999999974222


Q ss_pred             HhcCC--------Ccc-chH--HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          142 ETGGC--------PHA-AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       142 ~~~~~--------~~~-~~~--~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      .++..        ... ..+  +........|++|...+..+..-.. |||+++|+.|||+|+ +|..++|| |.+|.|+
T Consensus        93 ~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDP  172 (243)
T COG1137          93 KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP  172 (243)
T ss_pred             cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCc
Confidence            22111        111 111  1112233567777666555554444 999999999999999 99999999 8999987


Q ss_pred             ccc
Q 023913          208 PRK  210 (275)
Q Consensus       208 ~~~  210 (275)
                      .+.
T Consensus       173 iaV  175 (243)
T COG1137         173 IAV  175 (243)
T ss_pred             hhH
Confidence            653

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=1.8e-23  Score=193.06  Aligned_cols=141  Identities=17%  Similarity=0.059  Sum_probs=106.6

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhccccCchhH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~ig~v~q~~~------  138 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+   +++++||+||++.      
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t   98 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence            4555666667889999999999999999999999999998 99999999887655433   4568999999853      


Q ss_pred             --HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+... ......+....+.+.++.++.....+..+.+ |+||+||++|||||+ +|+++|+| |++++|...
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t  175 (343)
T TIGR02314        99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT  175 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence              22222110 0111112223455677777776677777888 999999999999999 99999999 899998654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.89  E-value=2.2e-23  Score=180.64  Aligned_cols=142  Identities=22%  Similarity=0.106  Sum_probs=100.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH----HHHhccccCchhH----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERI----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~----~~~~ig~v~q~~~----  138 (275)
                      +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+..    .++.++|++|++.    
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            34555565666789999999999999999999999999998 99999887765443222    2457999999852    


Q ss_pred             ----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  175 (218)
T cd03255          97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET  175 (218)
T ss_pred             CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence                1111111000 01111122344566666655555666666 999999999999999 99999999 888988654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.89  E-value=6.1e-24  Score=197.43  Aligned_cols=146  Identities=15%  Similarity=0.036  Sum_probs=110.9

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~  138 (275)
                      +|+...++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.++...++..+    ++.++|++|++.
T Consensus         2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~   81 (363)
T TIGR01186         2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA   81 (363)
T ss_pred             ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence            355666777777777889999999999999999999999999999 999999998877666555    568999999852


Q ss_pred             --------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 --------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                              +++.++.... ....+....+.+.++.+.+....+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus        82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD  161 (363)
T TIGR01186        82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD  161 (363)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence                    2222211000 01111223455667777666666777777 999999999999999 99999999 888988


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       162 ~~~  164 (363)
T TIGR01186       162 PLI  164 (363)
T ss_pred             HHH
Confidence            643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.89  E-value=2e-23  Score=203.14  Aligned_cols=147  Identities=20%  Similarity=0.180  Sum_probs=112.2

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +.+++.+.++..++|++++|+||+|||||||+++|+|+++|+ |+|.+++.++.+. ..++++.++|+
T Consensus       338 ~~vsf~Y~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V  413 (529)
T TIGR02868       338 RDLSFGYPG---SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVF  413 (529)
T ss_pred             EEEEEecCC---CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEE
Confidence            778888876   444555666667889999999999999999999999999998 9999999999988 88999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +|+.++ .+..+.. ++..+.+  .+.++.  ...+++..+.|     ||||+||++|||+++ +|+|
T Consensus       414 ~Q~~~lF~~TI~eNI~~g-~~~~~~e-~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       414 AQDAHLFDTTVRDNLRLG-RPDATDE-ELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             ccCcccccccHHHHHhcc-CCCCCHH-HHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99973       333333 3333222 2222111  233322  23467777776     999999999999999 8999


Q ss_pred             EEEe-CCCCCCc
Q 023913          197 YIID-VSGGDKI  207 (275)
Q Consensus       197 lllD-~t~g~d~  207 (275)
                      +|+| ||+.+|.
T Consensus       492 liLDE~TSaLD~  503 (529)
T TIGR02868       492 LLLDEPTEHLDA  503 (529)
T ss_pred             EEEeCCcccCCH
Confidence            9999 7877774

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.89  E-value=5.7e-23  Score=186.89  Aligned_cols=143  Identities=17%  Similarity=0.101  Sum_probs=106.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.       
T Consensus        14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv   92 (301)
T TIGR03522        14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYV   92 (301)
T ss_pred             CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcH
Confidence            445666666667889999999999999999999999999999 999999987754 33456678999999863       


Q ss_pred             -HHHHhcC-CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 -RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 -~~~~~~~-~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       +++.+.. .......+....+.+.++.+......++.+.+ |+||+||+.||++|+ +|+++|+| |++|+|...+
T Consensus        93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~  169 (301)
T TIGR03522        93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL  169 (301)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence             1111110 00001111123344566777666666777777 999999999999999 89999999 9999997653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.89  E-value=7.7e-24  Score=182.94  Aligned_cols=140  Identities=16%  Similarity=0.027  Sum_probs=100.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ...+.++|+||++..+      
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~   90 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQDYALFPHLTVA   90 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcCchhhccCCcHH
Confidence            44556666667889999999999999999999999999998 99999888765432  2345799999986311      


Q ss_pred             --HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 --VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 --~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~  165 (213)
T cd03259          91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL  165 (213)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence              11110000 00111112334566666655555666666 999999999999999 89999999 999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=1.5e-23  Score=180.25  Aligned_cols=139  Identities=14%  Similarity=0.026  Sum_probs=101.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HHHhcC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AVETGG  145 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~~~~~  145 (275)
                      ..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++..   ..+++.++|++|++.. ....+.
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv   89 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSV   89 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccH
Confidence            44555666666889999999999999999999999999998 999998876642   3455679999998521 111111


Q ss_pred             CCccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          146 CPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       146 ~~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+..+     ......+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  161 (205)
T cd03226          90 REELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN  161 (205)
T ss_pred             HHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence            111100     01112345567777666566777777 999999999999999 99999999 888988654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.5e-23  Score=179.75  Aligned_cols=139  Identities=18%  Similarity=0.130  Sum_probs=105.0

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-ChHHHHHhccccCchhHHH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA------  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~------  140 (275)
                      .++.++++...+||+++|+|++|||||||.++|+|+.+|+ |+|.+.+.+.... +...+.+.+.+|||++..-      
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            3666677777889999999999999999999999999999 9999999776543 3446777899999997310      


Q ss_pred             ----HHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          141 ----VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       141 ----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                          +.-..++ ..+.....++.+.|+.+++.. ..++.+.| ||||+||++|||||+ +|+++|+| |++.+|..
T Consensus       101 v~~~l~Epl~~-~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~s  175 (252)
T COG1124         101 VGRILSEPLRP-HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS  175 (252)
T ss_pred             HHHHHhhhhcc-CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHH
Confidence                0001111 011111122566777777654 56777888 999999999999999 99999999 88888863

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.89  E-value=1.1e-23  Score=182.97  Aligned_cols=143  Identities=20%  Similarity=0.107  Sum_probs=103.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------  139 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------  139 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++..      
T Consensus        12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv   90 (220)
T cd03265          12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTG   90 (220)
T ss_pred             CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcH
Confidence            344555666666789999999999999999999999999998 999998877653 234556679999998631      


Q ss_pred             --HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          140 --AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       140 --~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                        ++.+.... .....+....+.+.++.+......+..+.+ |+||+||++||++++ +|+++|+| |++++|....
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~  167 (220)
T cd03265          91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR  167 (220)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence              11111000 011111122345566777665555666777 999999999999999 99999999 9999997643

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.89  E-value=1.5e-23  Score=184.19  Aligned_cols=142  Identities=19%  Similarity=0.122  Sum_probs=102.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~-----  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....   ...+++.++|+||++.     
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL   93 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence            44555666666889999999999999999999999999998 99999888776543   2345667999999852     


Q ss_pred             ---HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ---~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                         +++.+.....         .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  173 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA  173 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence               1221111000         00011122334456666555555666666 999999999999999 99999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       174 ~LD~~~  179 (241)
T cd03256         174 SLDPAS  179 (241)
T ss_pred             cCCHHH
Confidence            999754

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.5e-23  Score=185.15  Aligned_cols=151  Identities=13%  Similarity=0.002  Sum_probs=109.7

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++   ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus         9 ~l~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   85 (274)
T PRK13647          9 DLHFRYKD---GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF   85 (274)
T ss_pred             EEEEEeCC---CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence            44555553   344566666667889999999999999999999999999998 99999998876555566677899999


Q ss_pred             chhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       135 q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      |++.         +++.++... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus        86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP  165 (274)
T PRK13647         86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP  165 (274)
T ss_pred             cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            9862         111111000 001111112344566666665556777777 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       166 t~~LD~~~  173 (274)
T PRK13647        166 MAYLDPRG  173 (274)
T ss_pred             CcCCCHHH
Confidence            99998654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.89  E-value=2.2e-23  Score=183.52  Aligned_cols=143  Identities=20%  Similarity=0.128  Sum_probs=102.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~----  138 (275)
                      ++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|++|++.    
T Consensus        14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   93 (243)
T TIGR02315        14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER   93 (243)
T ss_pred             CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence            345566666666889999999999999999999999999998 999998877654432   234667999999852    


Q ss_pred             ----HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ----RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ----~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                          +++.++....         .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  173 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI  173 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                1121111100         00011123344566666555555666666 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       174 ~~LD~~~  180 (243)
T TIGR02315       174 ASLDPKT  180 (243)
T ss_pred             ccCCHHH
Confidence            9998754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.89  E-value=1.7e-23  Score=181.94  Aligned_cols=150  Identities=16%  Similarity=0.085  Sum_probs=105.2

Q ss_pred             ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccc
Q 023913           57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGA  132 (275)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~  132 (275)
                      +.+.|++   .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|
T Consensus         7 l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   83 (222)
T PRK10908          7 VSKAYLG---GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGM   83 (222)
T ss_pred             eEEEecC---CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence            3445533   345566666667889999999999999999999999999998 9999988877654332   24568999


Q ss_pred             cCchhHH--------HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          133 LPEERIR--------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       133 v~q~~~~--------~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      ++|++..        ++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus        84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (222)
T PRK10908         84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE  163 (222)
T ss_pred             EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            9998631        11111000 011111112234456666555445666666 999999999999999 89999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       164 Pt~~LD~~~  172 (222)
T PRK10908        164 PTGNLDDAL  172 (222)
T ss_pred             CCCcCCHHH
Confidence            899998754

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.7e-23  Score=192.07  Aligned_cols=141  Identities=13%  Similarity=-0.024  Sum_probs=106.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||++.       
T Consensus        16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv   93 (356)
T PRK11650         16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSV   93 (356)
T ss_pred             CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCH
Confidence            445555666667789999999999999999999999999998 9999999888655432  368999999863       


Q ss_pred             -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~  169 (356)
T PRK11650         94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL  169 (356)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence             2222221111 11111223445567777766667777777 999999999999999 99999999 899998653

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.6e-23  Score=195.25  Aligned_cols=151  Identities=19%  Similarity=0.157  Sum_probs=119.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      .+++|.|+.   +++.+...++..++|+.++|+|+|||||||+||+|++++..+|+|.++|.|+.+.+...+|+.|||+|
T Consensus       355 ~dV~f~y~~---k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP  431 (591)
T KOG0057|consen  355 DDVHFSYGP---KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP  431 (591)
T ss_pred             EeeEEEeCC---CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence            778888876   55566566666677999999999999999999999999996699999999999999999999999999


Q ss_pred             chhH------HHHHhcCCCccchHHHHHHH-HHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEE
Q 023913          135 EERI------RAVETGGCPHAAIREDISIN-LGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       135 q~~~------~~~~~~~~~~~~~~~~~~~~-~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlll  199 (275)
                      |+..      ..+...||+..+..+-.+.. ...+.+..  ...+++..++|     ||||+||+++||+++ +|+|+++
T Consensus       432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~  511 (591)
T KOG0057|consen  432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL  511 (591)
T ss_pred             CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence            9974      23335688888765544322 12333322  23467788888     999999999999999 9999999


Q ss_pred             e-CCCCCCcc
Q 023913          200 D-VSGGDKIP  208 (275)
Q Consensus       200 D-~t~g~d~~  208 (275)
                      | ||+.+|..
T Consensus       512 DEaTS~LD~~  521 (591)
T KOG0057|consen  512 DEATSALDSE  521 (591)
T ss_pred             cCcccccchh
Confidence            9 78777754

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.1e-23  Score=183.39  Aligned_cols=143  Identities=16%  Similarity=0.044  Sum_probs=103.6

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec---cCCCCChHHHHHhccccCchhH-
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~---d~~~~~~~~~~~~ig~v~q~~~-  138 (275)
                      .|++..+..+.+.....||.++|+|||||||||||++|+|+..|+ |+|.+.+.   |...  .....++|||++|+.. 
T Consensus        11 ~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~--~~~~~R~VGfvFQ~YAL   88 (345)
T COG1118          11 RFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN--LAVRDRKVGFVFQHYAL   88 (345)
T ss_pred             hcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc--cchhhcceeEEEechhh
Confidence            455666666666666779999999999999999999999999999 99999887   4443  2334578999999863 


Q ss_pred             -------HHHHhcCCCc-cc--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 -------RAVETGGCPH-AA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 -------~~~~~~~~~~-~~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                             .++.+|.... +.  ..+....+.+.|..+.+....++.+.. ||||+||+++||||+ +|+|+||| |...+
T Consensus        89 F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL  168 (345)
T COG1118          89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL  168 (345)
T ss_pred             cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence                   3444443221 11  112223344455555555555565655 999999999999999 99999999 66666


Q ss_pred             Ccc
Q 023913          206 KIP  208 (275)
Q Consensus       206 d~~  208 (275)
                      |..
T Consensus       169 Da~  171 (345)
T COG1118         169 DAK  171 (345)
T ss_pred             hHH
Confidence            653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.89  E-value=2.3e-23  Score=179.92  Aligned_cols=150  Identities=19%  Similarity=0.063  Sum_probs=104.6

Q ss_pred             ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccc
Q 023913           57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGA  132 (275)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~  132 (275)
                      ..+.|++   ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|
T Consensus         6 l~~~~~~---~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~   82 (214)
T cd03292           6 VTKTYPN---GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV   82 (214)
T ss_pred             EEEEeCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence            3455544   334555666666889999999999999999999999999998 999998887755432   235567999


Q ss_pred             cCchhHHH--------HHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          133 LPEERIRA--------VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       133 v~q~~~~~--------~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      ++|++..+        +.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus        83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  162 (214)
T cd03292          83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE  162 (214)
T ss_pred             EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99986311        1111000 001111112334456666555445556666 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       163 Pt~~LD~~~  171 (214)
T cd03292         163 PTGNLDPDT  171 (214)
T ss_pred             CCCcCCHHH
Confidence            898988654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.89  E-value=1.8e-23  Score=181.56  Aligned_cols=141  Identities=16%  Similarity=0.088  Sum_probs=100.3

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-HhccccCchhH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI-----  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~-----  138 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......   ++ +.++|++|++.     
T Consensus        19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   98 (221)
T TIGR02211        19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF   98 (221)
T ss_pred             EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence            3455555566889999999999999999999999999998 99999888776544332   23 56999999852     


Q ss_pred             ---HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  176 (221)
T TIGR02211        99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN  176 (221)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence               111111000 001111122334566666555555666666 999999999999999 99999999 888998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7.2e-23  Score=184.32  Aligned_cols=153  Identities=12%  Similarity=-0.022  Sum_probs=110.3

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++. +...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus         9 ~l~~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~   87 (279)
T PRK13650          9 NLTFKYKED-QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVF   87 (279)
T ss_pred             eEEEEcCCC-CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEE
Confidence            445555430 0123555666667889999999999999999999999999998 99999998886555556777899999


Q ss_pred             chhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          135 EERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       135 q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      |++.         +++.++.... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus        88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP  167 (279)
T PRK13650         88 QNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA  167 (279)
T ss_pred             cChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            9862         1111111000 11111123345567777666666777777 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       168 t~~LD~~~  175 (279)
T PRK13650        168 TSMLDPEG  175 (279)
T ss_pred             cccCCHHH
Confidence            99998653

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=8.2e-23  Score=176.33  Aligned_cols=139  Identities=23%  Similarity=0.173  Sum_probs=111.7

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR---  139 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~---  139 (275)
                      +|++..++.+.++..++|++++++|+|||||||++++|+|++.|+ |+|.+.+.++..    ....+|||+|+++-.   
T Consensus        11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k   86 (300)
T COG4152          11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPK   86 (300)
T ss_pred             ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCcc
Confidence            788999999999999999999999999999999999999999998 999999988753    445689999998621   


Q ss_pred             -----HHH----hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          140 -----AVE----TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       140 -----~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                           .+.    +-|.+..   +........|+++.........+.+ |.|++|++.+..+++ .|.++||| |.+|+|+
T Consensus        87 ~tv~dql~yla~LkGm~~~---e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP  163 (300)
T COG4152          87 MTVEDQLKYLAELKGMPKA---EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP  163 (300)
T ss_pred             CcHHHHHHHHHHhcCCcHH---HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh
Confidence                 111    2233222   2223344577777776666677777 999999999999999 89999999 9999998


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       164 VN  165 (300)
T COG4152         164 VN  165 (300)
T ss_pred             hh
Confidence            65

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.89  E-value=4.8e-23  Score=187.53  Aligned_cols=143  Identities=19%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------  138 (275)
                      ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.+||+||++.      
T Consensus        15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~t   93 (303)
T TIGR01288        15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNLDPEFT   93 (303)
T ss_pred             CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccCCcCCc
Confidence            3445666666667889999999999999999999999999998 9999988876532 3455678999999852      


Q ss_pred             --HHHHh-cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+ .........+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|...
T Consensus        94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  170 (303)
T TIGR01288        94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA  170 (303)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence              11111 1000011111112233456666555556666777 999999999999999 89999999 999998754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.89  E-value=2.7e-23  Score=180.32  Aligned_cols=141  Identities=17%  Similarity=-0.015  Sum_probs=101.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (275)
                      +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++..       
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~   93 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDALFDELTVR   93 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCCccccCCHH
Confidence            44555666666889999999999999999999999999998 9999988776542 34556779999997521       


Q ss_pred             -HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       ++.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  168 (220)
T cd03263          94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS  168 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence             11111000 001111112334456666555455666666 999999999999999 99999999 899998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.89  E-value=2.6e-23  Score=178.56  Aligned_cols=141  Identities=16%  Similarity=0.066  Sum_probs=100.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhccccCchhHHH--
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRA--  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~--  140 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....    ..+++.++|++|++..+  
T Consensus        11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (206)
T TIGR03608        11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN   90 (206)
T ss_pred             EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence            45555666666889999999999999999999999999998 999998887543221    13456799999986321  


Q ss_pred             ------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          141 ------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       141 ------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                            +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus        91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~  168 (206)
T TIGR03608        91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK  168 (206)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence                  11110000 00111123344566666655556667777 999999999999999 99999999 88888754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.8e-23  Score=182.01  Aligned_cols=156  Identities=14%  Similarity=0.010  Sum_probs=107.0

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-Hh
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MR  129 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~  129 (275)
                      .++.+.|++.-....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......   ++ +.
T Consensus         9 ~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   88 (233)
T PRK11629          9 DNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK   88 (233)
T ss_pred             EeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhcc
Confidence            344555654100123455555566789999999999999999999999999998 99999988876554332   22 46


Q ss_pred             ccccCchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          130 NGALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       130 ig~v~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      ++|++|++.        +++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+|+|
T Consensus        89 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll  168 (233)
T PRK11629         89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL  168 (233)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999999852        122111100 001111123344566777665555666666 999999999999999 999999


Q ss_pred             Ee-CCCCCCcccc
Q 023913          199 ID-VSGGDKIPRK  210 (275)
Q Consensus       199 lD-~t~g~d~~~~  210 (275)
                      +| |++++|....
T Consensus       169 LDEPt~~LD~~~~  181 (233)
T PRK11629        169 ADEPTGNLDARNA  181 (233)
T ss_pred             EeCCCCCCCHHHH
Confidence            99 9999997653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=8.7e-23  Score=183.31  Aligned_cols=151  Identities=17%  Similarity=0.016  Sum_probs=108.5

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhcccc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGAL  133 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v  133 (275)
                      +..+.|++   +..++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.++.... ...+++.+||+
T Consensus         6 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v   82 (274)
T PRK13644          6 NVSYSYPD---GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIV   82 (274)
T ss_pred             EEEEEcCC---CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEE
Confidence            34455543   344566666667889999999999999999999999999998 99999988776543 24566789999


Q ss_pred             CchhHH---------HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          134 PEERIR---------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       134 ~q~~~~---------~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +|++..         ++.+.... ..........+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+|+|+| 
T Consensus        83 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  162 (274)
T PRK13644         83 FQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE  162 (274)
T ss_pred             EEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            998531         11111100 011111123344566666665556666777 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       163 Pt~gLD~~~  171 (274)
T PRK13644        163 VTSMLDPDS  171 (274)
T ss_pred             CcccCCHHH
Confidence            999998654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.88  E-value=1.2e-22  Score=200.15  Aligned_cols=150  Identities=18%  Similarity=0.120  Sum_probs=112.0

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +.+++.+.++..++|++++|+|++|||||||+++|+|++ |+ |+|.+++.++.+.+...+++.++|+
T Consensus       353 ~~vsf~~~~---~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v  428 (588)
T PRK11174        353 EDLEILSPD---GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV  428 (588)
T ss_pred             EeeEEeccC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence            556655544   445555666666889999999999999999999999999 77 9999999999988889999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      +|++.       +|+.+ +++..+..+-... ....+.++.  ...+++..+.|     ||||+||++||||++ +|+|+
T Consensus       429 ~Q~~~LF~~TI~eNI~~-g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il  507 (588)
T PRK11174        429 GQNPQLPHGTLRDNVLL-GNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL  507 (588)
T ss_pred             cCCCcCCCcCHHHHhhc-CCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99973       33333 4444433221111 111233332  23467777777     999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      ||| ||+.+|...
T Consensus       508 iLDE~TSaLD~~t  520 (588)
T PRK11174        508 LLDEPTASLDAHS  520 (588)
T ss_pred             EEeCCccCCCHHH
Confidence            999 888888643

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.88  E-value=8.6e-23  Score=178.96  Aligned_cols=143  Identities=22%  Similarity=0.114  Sum_probs=103.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|+||++.       
T Consensus        13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (236)
T cd03219          13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV   92 (236)
T ss_pred             EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence            34555666666789999999999999999999999999998 999999887765544443 346999999852       


Q ss_pred             -HHHHhcCCCc-c----------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 -RAVETGGCPH-A----------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 -~~~~~~~~~~-~----------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                       +++.+..... .          ........+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~  172 (236)
T cd03219          93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAA  172 (236)
T ss_pred             HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence             1221111000 0          0111123345567777665556666777 999999999999999 99999999 999


Q ss_pred             CCCcccc
Q 023913          204 GDKIPRK  210 (275)
Q Consensus       204 g~d~~~~  210 (275)
                      ++|...+
T Consensus       173 ~LD~~~~  179 (236)
T cd03219         173 GLNPEET  179 (236)
T ss_pred             cCCHHHH
Confidence            9997543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.1e-22  Score=183.77  Aligned_cols=154  Identities=17%  Similarity=0.054  Sum_probs=108.2

Q ss_pred             cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhcc
Q 023913           56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNG  131 (275)
Q Consensus        56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig  131 (275)
                      ++.+.|++.-+ .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ...+++.+|
T Consensus         7 ~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig   86 (287)
T PRK13637          7 NLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG   86 (287)
T ss_pred             EEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceE
Confidence            34555653111 134566666667889999999999999999999999999998 99999998876532  235667899


Q ss_pred             ccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc--ccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       132 ~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~--~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      |+||++.         +++.++... .....+....+.+.++.++..  ...+..+.+ |+||+||++|||+|+ +|+++
T Consensus        87 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ll  166 (287)
T PRK13637         87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKIL  166 (287)
T ss_pred             EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999852         111111000 011111223345567776664  345666667 999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| |++++|...
T Consensus       167 llDEPt~gLD~~~  179 (287)
T PRK13637        167 ILDEPTAGLDPKG  179 (287)
T ss_pred             EEECCccCCCHHH
Confidence            999 999998653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.88  E-value=1.1e-22  Score=176.62  Aligned_cols=141  Identities=19%  Similarity=0.101  Sum_probs=99.0

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------  138 (275)
                      ..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|+||++.       
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            44555666666889999999999999999999999999998 999999887765544443 456999999862       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.+....... ..........++.+ ......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        93 ~~~l~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  167 (222)
T cd03224          93 EENLLLGAYARRR-AKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI  167 (222)
T ss_pred             HHHHHHHhhhcCc-hhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHH
Confidence             111111110000 01111222334444 223345566666 999999999999999 89999999 999998754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.88  E-value=1.6e-22  Score=198.52  Aligned_cols=152  Identities=21%  Similarity=0.169  Sum_probs=118.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +.+++.+.++..++|+.++|+||+|||||||++.|+++++|+ |+|.+++.|+.+.+...+++.++++
T Consensus       332 ~~vsf~y~~---~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V  408 (567)
T COG1132         332 ENVSFSYPG---KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV  408 (567)
T ss_pred             EEEEEEcCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence            777888887   566666777778889999999999999999999999999997 9999999999999999999999999


Q ss_pred             CchhH------HHHHhcCCCccchHHHHHHHHH-HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEERI------RAVETGGCPHAAIREDISINLG-PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~-~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll  198 (275)
                      ||++.      ..+..-+++.++..+-...... .+.++..  ..+++..+.|     |+|||||++|||+++ +|+|+|
T Consensus       409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI  488 (567)
T COG1132         409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI  488 (567)
T ss_pred             cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99973      3333445555443222211111 1233222  3368888886     999999999999999 999999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      || ||+.+|...
T Consensus       489 LDEaTSalD~~t  500 (567)
T COG1132         489 LDEATSALDTET  500 (567)
T ss_pred             EeccccccCHHh
Confidence            99 888887643

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.88  E-value=1.2e-22  Score=175.31  Aligned_cols=142  Identities=18%  Similarity=0.099  Sum_probs=100.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhccccCchhHH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR-----  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~-----  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.++|++|++..     
T Consensus        13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (213)
T cd03262          13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT   92 (213)
T ss_pred             eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence            44555666666789999999999999999999999999998 999998877642  1233456789999998631     


Q ss_pred             ---HHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 ---AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ---~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         ++.+...  ......+....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  170 (213)
T cd03262          93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL  170 (213)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence               1111100  0001111122334456666555445666666 999999999999999 89999999 888988653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.88  E-value=2.8e-23  Score=179.15  Aligned_cols=140  Identities=21%  Similarity=0.138  Sum_probs=99.6

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (275)
                      +.++.+.++...+| +++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++..       
T Consensus        13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~   90 (211)
T cd03264          13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVR   90 (211)
T ss_pred             EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHH
Confidence            34555555556678 99999999999999999999999998 99999887765433 4566789999998621       


Q ss_pred             -HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       ++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~  165 (211)
T cd03264          91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE  165 (211)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence             11110000 000011112234456666555445666666 999999999999999 99999999 899998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=3.2e-23  Score=179.11  Aligned_cols=145  Identities=19%  Similarity=0.094  Sum_probs=116.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchh----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEER----  137 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~----  137 (275)
                      +|+.-.++.++++...+|++++|+||||||||||+|+|+|.++|+ |+|.+.+.++....+.++.+ .++-.||..    
T Consensus        13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~   92 (250)
T COG0411          13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP   92 (250)
T ss_pred             ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence            788888999999999999999999999999999999999999999 99999999998887766554 356667765    


Q ss_pred             ----HHHHHhcCCCc----------c---chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          138 ----IRAVETGGCPH----------A---AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       138 ----~~~~~~~~~~~----------~---~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                          .+++..+....          .   ...+....+.+.|+.+++....+....+ |.|+++++.|||||+ +|++++
T Consensus        93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLL  172 (250)
T COG0411          93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLL  172 (250)
T ss_pred             CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEE
Confidence                24444331111          0   1123335567788888888888888888 999999999999999 999999


Q ss_pred             Ee-CCCCCCcc
Q 023913          199 ID-VSGGDKIP  208 (275)
Q Consensus       199 lD-~t~g~d~~  208 (275)
                      || |.+|+...
T Consensus       173 LDEPaAGln~~  183 (250)
T COG0411         173 LDEPAAGLNPE  183 (250)
T ss_pred             ecCccCCCCHH
Confidence            99 88887643

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.88  E-value=1.1e-22  Score=175.83  Aligned_cols=137  Identities=23%  Similarity=0.180  Sum_probs=98.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.     .+++.++|++|++..       
T Consensus        12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~t   86 (213)
T cd03235          12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPIS   86 (213)
T ss_pred             EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCc
Confidence            44555666666789999999999999999999999999998 99998876542     355679999997521       


Q ss_pred             ---HHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          140 ---AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       140 ---~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                         ++.+......     ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus        87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~  166 (213)
T cd03235          87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK  166 (213)
T ss_pred             HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence               1111111100     0011122344456666555445666666 999999999999999 99999999 89999875


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       167 ~  167 (213)
T cd03235         167 T  167 (213)
T ss_pred             H
Confidence            4

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.88  E-value=4.9e-23  Score=180.25  Aligned_cols=142  Identities=19%  Similarity=0.070  Sum_probs=102.5

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~-----  139 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   ..++.++|+||++..     
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT   98 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence            4555655666789999999999999999999999999998 9999998887654332   235679999998521     


Q ss_pred             ---HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          140 ---AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       140 ---~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                         ++.+..... .........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|....
T Consensus        99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (233)
T cd03258          99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT  176 (233)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence               111110000 01111122344566666665555666666 999999999999999 99999999 8999997543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.7e-22  Score=181.88  Aligned_cols=152  Identities=16%  Similarity=-0.007  Sum_probs=109.3

Q ss_pred             ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.+.|++   . ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus         9 ~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13635          9 EHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM   85 (279)
T ss_pred             EEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence            344555543   2 23555655666789999999999999999999999999998 999999988866555566678999


Q ss_pred             cCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          133 LPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       133 v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      ++|++.         +++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|.++|+|
T Consensus        86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  165 (279)
T PRK13635         86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD  165 (279)
T ss_pred             EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999862         1111110000 11111123345566666666556666777 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       166 EPt~gLD~~~  175 (279)
T PRK13635        166 EATSMLDPRG  175 (279)
T ss_pred             CCcccCCHHH
Confidence             999998653

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.88  E-value=3.8e-23  Score=185.11  Aligned_cols=146  Identities=16%  Similarity=0.017  Sum_probs=104.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~  138 (275)
                      +|++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+    .+.++|++|++.
T Consensus        33 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~  112 (269)
T cd03294          33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA  112 (269)
T ss_pred             hcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence            344556666666777889999999999999999999999999998 999998877655433222    246999999852


Q ss_pred             H--------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 R--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 ~--------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                      .        ++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus       113 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD  192 (269)
T cd03294         113 LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD  192 (269)
T ss_pred             cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            1        111110000 00111122344566666655555666677 999999999999999 99999999 999999


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       193 ~~~  195 (269)
T cd03294         193 PLI  195 (269)
T ss_pred             HHH
Confidence            764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.88  E-value=4.7e-23  Score=178.51  Aligned_cols=140  Identities=18%  Similarity=0.051  Sum_probs=101.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++.        +
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e   97 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE   97 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence            3455555556789999999999999999999999999998 999998887753 34456678999999852        1


Q ss_pred             HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  171 (218)
T cd03266          98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA  171 (218)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence            111110000 01111123344566766655555666666 999999999999999 99999999 899998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.88  E-value=2.9e-23  Score=178.70  Aligned_cols=139  Identities=17%  Similarity=0.022  Sum_probs=100.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...  ..+++.++|++|++.       
T Consensus        12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv   89 (208)
T cd03268          12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTA   89 (208)
T ss_pred             CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcH
Confidence            345566666666889999999999999999999999999998 9999988766432  345667999999852       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       +++.+.......   ....+.+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...+
T Consensus        90 ~e~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~  162 (208)
T cd03268          90 RENLRLLARLLGI---RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI  162 (208)
T ss_pred             HHHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence             111111100000   112233455666555445666666 999999999999999 89999999 8999987543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.6e-22  Score=181.81  Aligned_cols=151  Identities=15%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++   ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++
T Consensus         8 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   84 (277)
T PRK13652          8 DLCYSYSG---SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVF   84 (277)
T ss_pred             EEEEEeCC---CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEe
Confidence            44455543   344566666667889999999999999999999999999998 99999988776544456677899999


Q ss_pred             chhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       135 q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      |++.         +++.+.... ..........+.+.++.+......++.+.+ |+||+||+.|||+|+ +|+++|+| |
T Consensus        85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP  164 (277)
T PRK13652         85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP  164 (277)
T ss_pred             cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9852         111111000 011111112334566666665556666777 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       165 t~gLD~~~  172 (277)
T PRK13652        165 TAGLDPQG  172 (277)
T ss_pred             cccCCHHH
Confidence            99998643

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.88  E-value=6.5e-23  Score=178.79  Aligned_cols=142  Identities=17%  Similarity=0.087  Sum_probs=100.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc-----CCC-CcEEEEeccCCCCC--hHHHHHhccccCchhHH
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIR  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l-----~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|++     +|+ |+|.+.+.++....  ...+++.++|++|++..
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   92 (227)
T cd03260          13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP   92 (227)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence            44555666666889999999999999999999999999     887 99999888765443  34456779999998632


Q ss_pred             H-------HHhcCCCcc-chHH-HHHHHHHHHHHhhcccccccc--ccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          140 A-------VETGGCPHA-AIRE-DISINLGPLEELSNLFKADLL--LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       140 ~-------~~~~~~~~~-~~~~-~~~~~~~~L~~l~~~~~~d~~--~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                      +       +.+...... .... ....+.+.++.+......+..  +.+ |+||+||++|||+|+ +|+++|+| |++++
T Consensus        93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L  172 (227)
T cd03260          93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL  172 (227)
T ss_pred             ccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            1       111100000 0001 122334456666554433444  355 999999999999999 89999999 89999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus       173 D~~~  176 (227)
T cd03260         173 DPIS  176 (227)
T ss_pred             CHHH
Confidence            8754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.4e-22  Score=187.58  Aligned_cols=141  Identities=17%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhccccCchhH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~ig~v~q~~~------  138 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+   +++.+||+||++.      
T Consensus        19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~t   98 (343)
T PRK11153         19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRT   98 (343)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCc
Confidence            4555666667889999999999999999999999999998 99999998876554332   3567999999852      


Q ss_pred             --HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+... ......+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~  175 (343)
T PRK11153         99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT  175 (343)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence              12221110 0011111123344566766665556666677 999999999999999 89999999 899998654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=8.8e-23  Score=189.18  Aligned_cols=141  Identities=14%  Similarity=0.020  Sum_probs=105.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  ..+++||++|+..       
T Consensus        18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~lfp~~tv   95 (351)
T PRK11432         18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYALFPHMSL   95 (351)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCCH
Confidence            445566666667889999999999999999999999999998 999999988765433  3468999999863       


Q ss_pred             -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~  171 (351)
T PRK11432         96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANL  171 (351)
T ss_pred             HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence             2222221111 11111223445566666666666777777 999999999999999 99999999 899988654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.88  E-value=5.1e-23  Score=181.28  Aligned_cols=142  Identities=17%  Similarity=0.050  Sum_probs=102.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      ..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.        
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE   93 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence            34555666666889999999999999999999999999998 999998887765444455667999999852        


Q ss_pred             HHHHhcCCC-ccchHHHHHHHHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCP-HAAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+.... ..........+.+.++.+....  ..+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  170 (242)
T cd03295          94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT  170 (242)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            111111000 0111111233445666665543  34555666 999999999999999 89999999 999999764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.88  E-value=1.4e-22  Score=188.08  Aligned_cols=141  Identities=18%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  ..+.+||++|++.       
T Consensus        14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv   91 (353)
T PRK10851         14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTV   91 (353)
T ss_pred             CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcH
Confidence            344555666667889999999999999999999999999998 999999988765432  3467999999852       


Q ss_pred             -HHHHhcCCC-----ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~-----~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++...     .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~  171 (353)
T PRK10851         92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV  171 (353)
T ss_pred             HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence             233332211     111122223455677777666667777777 999999999999999 99999999 899998654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=4.2e-23  Score=178.25  Aligned_cols=140  Identities=13%  Similarity=-0.037  Sum_probs=100.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  ..+.++|++|++..       
T Consensus        13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~   90 (213)
T cd03301          13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMVFQNYALYPHMTVY   90 (213)
T ss_pred             eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEEecChhhccCCCHH
Confidence            44556666666889999999999999999999999999998 999998887754322  13579999998631       


Q ss_pred             -HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       ++.+..... ....+....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  165 (213)
T cd03301          91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL  165 (213)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence             111110000 01111122334456666555555666666 999999999999999 89999999 899998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=1.8e-22  Score=182.04  Aligned_cols=152  Identities=14%  Similarity=-0.014  Sum_probs=109.5

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhcc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNG  131 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig  131 (275)
                      .++.+.|++   +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.+|
T Consensus         9 ~~l~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig   85 (283)
T PRK13636          9 EELNYNYSD---GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG   85 (283)
T ss_pred             EeEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence            344555543   345666666667889999999999999999999999999998 999999988742  22345667899


Q ss_pred             ccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          132 ALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       132 ~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      |+||++.         +++.++... .....+....+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+
T Consensus        86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLil  165 (283)
T PRK13636         86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL  165 (283)
T ss_pred             EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999862         111111000 011112223345566777666666777777 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | |++++|...
T Consensus       166 DEPt~gLD~~~  176 (283)
T PRK13636        166 DEPTAGLDPMG  176 (283)
T ss_pred             eCCccCCCHHH
Confidence            9 999998654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=7.7e-23  Score=189.77  Aligned_cols=142  Identities=15%  Similarity=0.038  Sum_probs=105.9

Q ss_pred             CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------  138 (275)
                      ++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  ..+.+||+||+..      
T Consensus        15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig~v~Q~~~lfp~~t   92 (353)
T TIGR03265        15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYGIVFQSYALFPNLT   92 (353)
T ss_pred             CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcccCCCCc
Confidence            3344555666666789999999999999999999999999998 999999988765443  3567999999863      


Q ss_pred             --HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~  169 (353)
T TIGR03265        93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARV  169 (353)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence              2222221110 01111223455677777776667777777 999999999999999 99999999 888988654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.88  E-value=1.4e-22  Score=177.07  Aligned_cols=143  Identities=19%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|++|++.       
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (232)
T cd03218          13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV   92 (232)
T ss_pred             EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence            44555666666889999999999999999999999999998 999998877655443333 346999999852       


Q ss_pred             -HHHHhcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 -RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 -~~~~~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       +++.+....... .......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  169 (232)
T cd03218          93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV  169 (232)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence             111111100101 111112334456666555555666666 999999999999999 99999999 9999997653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-22  Score=180.63  Aligned_cols=153  Identities=16%  Similarity=0.032  Sum_probs=107.5

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|++  +...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus        11 ~nl~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v   88 (271)
T PRK13632         11 ENVSFSYPN--SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII   88 (271)
T ss_pred             EeEEEEcCC--CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence            344555542  1234455555556789999999999999999999999999998 9999998887654445667789999


Q ss_pred             CchhH-HH--------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          134 PEERI-RA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       134 ~q~~~-~~--------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +|++. .+        +.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus        89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE  168 (271)
T PRK13632         89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE  168 (271)
T ss_pred             EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99862 11        11110000 01111112344566666655556666667 999999999999999 89999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       169 P~~gLD~~~  177 (271)
T PRK13632        169 STSMLDPKG  177 (271)
T ss_pred             CcccCCHHH
Confidence            999998754

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4e-23  Score=184.49  Aligned_cols=151  Identities=18%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++    +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus        15 ~~l~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v   90 (265)
T PRK10575         15 RNVSFRVPG----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL   90 (265)
T ss_pred             eeEEEEECC----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence            444455543    45566666667889999999999999999999999999998 9999988877655555666789999


Q ss_pred             CchhH--------HHHHhcCCCcc----ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEERI--------RAVETGGCPHA----AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~~~----~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      +|++.        +++.+..+...    .. ......+...++.+......+..+.+ |+||+||++|||+|+ +|+|+|
T Consensus        91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  170 (265)
T PRK10575         91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL  170 (265)
T ss_pred             ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99742        22222211100    00 11122334456666555555666667 999999999999999 999999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       171 LDEPt~~LD~~~  182 (265)
T PRK10575        171 LDEPTSALDIAH  182 (265)
T ss_pred             EcCCcccCCHHH
Confidence            99 999998754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.88  E-value=7.1e-23  Score=178.69  Aligned_cols=140  Identities=17%  Similarity=0.157  Sum_probs=100.2

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhH------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~------  138 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......   . .+.++|++|++.      
T Consensus        25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~t  104 (228)
T PRK10584         25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLN  104 (228)
T ss_pred             EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcC
Confidence            455555566789999999999999999999999999998 99999888776544332   2 246999998852      


Q ss_pred             --HHHHhcC-CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~-~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+.. ............+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus       105 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~  181 (228)
T PRK10584        105 ALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT  181 (228)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence              1111111 00011111223345566666655555666666 999999999999999 99999999 899998654

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=1.3e-22  Score=178.48  Aligned_cols=141  Identities=18%  Similarity=0.061  Sum_probs=100.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++.        
T Consensus        15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~   92 (239)
T cd03296          15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVF   92 (239)
T ss_pred             EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHH
Confidence            44555666667889999999999999999999999999998 999998877654322  2357999999852        


Q ss_pred             HHHHhcCCCc-c----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 RAVETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ~~~~~~~~~~-~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      +++.+..... .    ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus        93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~  172 (239)
T cd03296          93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR  172 (239)
T ss_pred             HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            1121111000 0    1111112334456666555445666666 999999999999999 89999999 9999997543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.6e-22  Score=178.75  Aligned_cols=152  Identities=15%  Similarity=0.038  Sum_probs=107.8

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+..+.|++   .. .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus        11 ~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   87 (269)
T PRK13648         11 KNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI   87 (269)
T ss_pred             EEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence            344455554   32 3455555666789999999999999999999999999998 999999888765555566778999


Q ss_pred             cCchhHH---------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          133 LPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       133 v~q~~~~---------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      ++|++..         ++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+|
T Consensus        88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD  167 (269)
T PRK13648         88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD  167 (269)
T ss_pred             EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            9998631         111111000 11111122334456666655555666666 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       168 EPt~~LD~~~  177 (269)
T PRK13648        168 EATSMLDPDA  177 (269)
T ss_pred             CCcccCCHHH
Confidence             999998653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=4.4e-23  Score=179.14  Aligned_cols=137  Identities=17%  Similarity=0.044  Sum_probs=98.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..     ..+.++|++|++..        
T Consensus        18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~e   92 (220)
T cd03293          18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLD   92 (220)
T ss_pred             EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHHH
Confidence            3455555666789999999999999999999999999998 999998876642     24579999997521        


Q ss_pred             HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      ++.+.... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~  167 (220)
T cd03293          93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR  167 (220)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence            11111000 000111123344566666655555666666 999999999999999 89999999 9999987543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.1e-22  Score=174.38  Aligned_cols=144  Identities=17%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCChHHHHHhccccCchhH--
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.......+++.++|++|++.  
T Consensus        15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~   94 (250)
T PRK14247         15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI   94 (250)
T ss_pred             CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence            34455566666688999999999999999999999999873     5 999999988765555566678999999862  


Q ss_pred             ------HHHHhcCCCcc---chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ------RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ------~~~~~~~~~~~---~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                            +++.++.....   ...+....+.+.++.+...    ...+..+.+ |+||+||+++||+|+ +|+++|+| |+
T Consensus        95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~  174 (250)
T PRK14247         95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT  174 (250)
T ss_pred             CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                  12211110000   0111112334455555432    234566666 999999999999999 89999999 99


Q ss_pred             CCCCcccc
Q 023913          203 GGDKIPRK  210 (275)
Q Consensus       203 ~g~d~~~~  210 (275)
                      +++|...+
T Consensus       175 ~~LD~~~~  182 (250)
T PRK14247        175 ANLDPENT  182 (250)
T ss_pred             ccCCHHHH
Confidence            99987643

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.87  E-value=2.2e-22  Score=176.67  Aligned_cols=141  Identities=18%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..++.++|++|++..       
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~   92 (236)
T TIGR03864        14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVR   92 (236)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHH
Confidence            44555666666889999999999999999999999999998 999998877654433 334679999998521       


Q ss_pred             -HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       ++.+..... .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~  167 (236)
T TIGR03864        93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS  167 (236)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence             111111000 11111122334456666555555666666 999999999999999 89999999 999999754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=5.6e-23  Score=191.84  Aligned_cols=141  Identities=15%  Similarity=-0.011  Sum_probs=103.9

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  ..+.+||++|++.       
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~v~Q~~~l~~~~tv   92 (369)
T PRK11000         15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGMVFQSYALYPHLSV   92 (369)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEEEeCCcccCCCCCH
Confidence            344555666666789999999999999999999999999998 999998887754433  2467999999852       


Q ss_pred             -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~  168 (369)
T PRK11000         93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL  168 (369)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence             2222221100 11111223445567777666666777777 999999999999999 99999999 899998654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.6e-23  Score=183.14  Aligned_cols=142  Identities=21%  Similarity=0.178  Sum_probs=103.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+||++.        
T Consensus        20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~   99 (265)
T PRK10253         20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ   99 (265)
T ss_pred             EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence            44555666666889999999999999999999999999998 999998887765555566678999999852        


Q ss_pred             HHHHhcCCCcc----ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHA----AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~----~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+......    .. ......+.+.++.+......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~  178 (265)
T PRK10253        100 ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH  178 (265)
T ss_pred             HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            22222211110    00 11122334456666555455666666 999999999999999 89999999 899998653

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.87  E-value=4.7e-23  Score=177.63  Aligned_cols=138  Identities=20%  Similarity=0.059  Sum_probs=97.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..    ..++.++|++|++.        
T Consensus        13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~   88 (210)
T cd03269          13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVI   88 (210)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHH
Confidence            44555556666889999999999999999999999999998 999988866531    34567999998852        


Q ss_pred             HHHHhcCC-CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+... ...........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~  163 (210)
T cd03269          89 DQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN  163 (210)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            11111100 0001111122334456666554445555666 999999999999999 99999999 899998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.2e-22  Score=181.04  Aligned_cols=154  Identities=14%  Similarity=0.016  Sum_probs=106.8

Q ss_pred             cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHh
Q 023913           56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMR  129 (275)
Q Consensus        56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~  129 (275)
                      +..+.|++.-. ..+++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...    ....+++.
T Consensus         7 ~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~   86 (290)
T PRK13634          7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK   86 (290)
T ss_pred             EEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhh
Confidence            44555653100 134566666667889999999999999999999999999998 9999999877431    23355678


Q ss_pred             ccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       130 ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      +||+||++.         +++.++... .....+....+.+.++.+.+. ...+..+.+ |+||+||++|||+|+ +|++
T Consensus        87 ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~l  166 (290)
T PRK13634         87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEV  166 (290)
T ss_pred             EEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            999999852         111111110 011111223345566777664 334666666 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       167 lllDEPt~~LD~~~  180 (290)
T PRK13634        167 LVLDEPTAGLDPKG  180 (290)
T ss_pred             EEEECCcccCCHHH
Confidence            9999 899998654

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.87  E-value=5.9e-22  Score=201.97  Aligned_cols=167  Identities=19%  Similarity=0.138  Sum_probs=125.5

Q ss_pred             ccccccCCCCCCCCCCccc-cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPIL-SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~-~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.||.+-  +..+++ .++..++|++++|+|++||||||++++|.+++.|+ |+|.+++.|+...+...++.++|.
T Consensus       354 ~nV~FsYPsRp--dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl  431 (1228)
T KOG0055|consen  354 RNVCFSYPSRP--DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL  431 (1228)
T ss_pred             EEEEecCCCCC--cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe
Confidence            88889999821  234444 44556779999999999999999999999999999 999999999999998899999999


Q ss_pred             cCchhHHH------HHhcCCCccchHHHHHH-----HHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERIRA------VETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~~~------~~~~~~~~~~~~~~~~~-----~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      |.|+|..+      +...|.+..+..+..+.     +.+.+..  +..+++..++|     ||||+||++|||+|+ +|+
T Consensus       432 V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~  509 (1228)
T KOG0055|consen  432 VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPK  509 (1228)
T ss_pred             eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCC
Confidence            99998422      22334555543322211     1112222  24567777777     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccccc---------------------cccccccCEEEEec
Q 023913          196 IYIID-VSGGDKIPRKG---------------------GPGITQADLLVINK  225 (275)
Q Consensus       196 vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK  225 (275)
                      |+||| ||+++|.....                     ...++.||.|++-+
T Consensus       510 ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~  561 (1228)
T KOG0055|consen  510 ILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME  561 (1228)
T ss_pred             EEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence            99999 88888865432                     13467899777555

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.87  E-value=4.1e-22  Score=177.39  Aligned_cols=143  Identities=22%  Similarity=0.210  Sum_probs=103.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.       
T Consensus        14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (258)
T PRK13548         14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV   93 (258)
T ss_pred             CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence            344555666666889999999999999999999999999998 999998877665555556677999999752       


Q ss_pred             -HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCc
Q 023913          139 -RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 -~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~  207 (275)
                       +++.+...... ........+.+.++.+......+..+.+ |+||+||++||++|+       +|.++|+| |++++|.
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~  173 (258)
T PRK13548         94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL  173 (258)
T ss_pred             HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence             12222111111 1111122334466666555555666667 999999999999998       79999999 9999986


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       174 ~~  175 (258)
T PRK13548        174 AH  175 (258)
T ss_pred             HH
Confidence            54

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.9e-22  Score=178.72  Aligned_cols=143  Identities=11%  Similarity=-0.014  Sum_probs=100.9

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC--CChHHHHHhccccCchhHH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR----  139 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~----  139 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.++|++|++..    
T Consensus        13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (271)
T PRK13638         13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY   92 (271)
T ss_pred             CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence            345555666666889999999999999999999999999998 999998887642  1223456679999998521    


Q ss_pred             -----HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -----AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -----~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           ++.+.... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~  171 (271)
T PRK13638         93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG  171 (271)
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                 11111000 001111112234456665554445666666 999999999999999 99999999 999998654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.87  E-value=3.6e-22  Score=200.05  Aligned_cols=149  Identities=17%  Similarity=0.107  Sum_probs=113.5

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +.+ ++.+.++..++|+.++|+|++|||||||+|+|+|+++|+ |+|.+++.++.+.+...+++.+||
T Consensus       455 ~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  531 (686)
T TIGR03797       455 DRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV  531 (686)
T ss_pred             EEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence            788899976   444 444555556789999999999999999999999999998 999999999998888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +|+.+ +.+ .+.. ++..+.+  .+.++.  ...+++..+.|     ||||+||+++|||++ +|+
T Consensus       532 v~Q~~~lf~gTI~eNi~~-~~~-~~~e-~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~  608 (686)
T TIGR03797       532 VLQNGRLMSGSIFENIAG-GAP-LTLD-EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR  608 (686)
T ss_pred             EccCCccCcccHHHHHhc-CCC-CCHH-HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            999973       33333 333 3222 2221111  223221  23466777766     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       609 iLiLDEpTS~LD~~t  623 (686)
T TIGR03797       609 ILLFDEATSALDNRT  623 (686)
T ss_pred             EEEEeCCccCCCHHH
Confidence            99999 888888654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.87  E-value=1.6e-22  Score=170.69  Aligned_cols=117  Identities=26%  Similarity=0.275  Sum_probs=90.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|           
T Consensus        12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-----------   80 (180)
T cd03214          12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-----------   80 (180)
T ss_pred             eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------
Confidence            34555665666889999999999999999999999999998 999998888766555566667888876           


Q ss_pred             CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                                    .++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        81 --------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~  132 (180)
T cd03214          81 --------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH  132 (180)
T ss_pred             --------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence                          12222222222333344 999999999999999 99999999 888988654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.87  E-value=3.6e-22  Score=174.17  Aligned_cols=142  Identities=16%  Similarity=0.085  Sum_probs=102.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.       
T Consensus        19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~   98 (225)
T PRK10247         19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY   98 (225)
T ss_pred             CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence            445666666667889999999999999999999999999998 999998887765555556678999999853       


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+....... ......+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        99 enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  172 (225)
T PRK10247         99 DNLIFPWQIRNQ-QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESN  172 (225)
T ss_pred             HHHHhHHhhcCC-ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            111111000000 01112233456666543 234556666 999999999999999 99999999 899998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.4e-22  Score=179.82  Aligned_cols=141  Identities=18%  Similarity=0.067  Sum_probs=101.7

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHhccccCchhH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ig~v~q~~~-----  138 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...    ....+++.+||+||++.     
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~  100 (286)
T PRK13646         21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE  100 (286)
T ss_pred             CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence            4566666666889999999999999999999999999998 9999998877532    12356778999999852     


Q ss_pred             ----HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.++... .....+....+.+.++.++.. ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus       101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~  180 (286)
T PRK13646        101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS  180 (286)
T ss_pred             hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence                111111000 011111223344566666654 344555666 999999999999999 99999999 999998654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.9e-23  Score=181.87  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+.+.++|++|++.       
T Consensus        14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (255)
T PRK11231         14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV   93 (255)
T ss_pred             CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence            344555666666889999999999999999999999999998 999998877655445556677999999752       


Q ss_pred             -HHHHhcCCCc----cc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH----AA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~----~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++....    .. .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (255)
T PRK11231         94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH  173 (255)
T ss_pred             HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence             1222221100    00 011122334455555554445666666 999999999999999 89999999 999998654

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.87  E-value=6.8e-22  Score=201.55  Aligned_cols=177  Identities=18%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             CCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH
Q 023913           51 LAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF  126 (275)
Q Consensus        51 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~  126 (275)
                      ..|.   .++.|.||. .++.++..+-+....+|+.++|+||+||||||++.+|-.+|.|+ |.|.+++.|+...+...+
T Consensus       984 ~~G~I~~~~V~F~YPs-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  984 VKGDIEFRNVSFAYPT-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             ceeEEEEeeeEeeCCC-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence            4455   889999996 33344444555556779999999999999999999999999999 999999999999999999


Q ss_pred             HHhccccCchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHh--hccccccccccc-----ChhHHHHHHHHHHh
Q 023913          127 LMRNGALPEERI-------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSREL  191 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~~~laral  191 (275)
                      |+++|.|.|+|.       +|+.+| ....+..+-.+. ....+..|  .+..++|..++|     ||||+||++||||+
T Consensus      1063 R~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred             HHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence            999999999994       455555 222333222111 11122233  245689999998     99999999999999


Q ss_pred             c-CceEEEEe-CCCCCCccccc---------------------cccccccCEEEEecCCCC
Q 023913          192 A-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLA  229 (275)
Q Consensus       192 ~-~~~vlllD-~t~g~d~~~~~---------------------~~~i~~adiivlNK~Dl~  229 (275)
                      + +|+|+||| +|+.+|.....                     ...++.||.|++-|--.+
T Consensus      1142 lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKV 1202 (1228)
T ss_pred             HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEE
Confidence            9 99999999 78888865432                     123577887776654443

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.87  E-value=2.9e-22  Score=201.41  Aligned_cols=150  Identities=12%  Similarity=0.013  Sum_probs=113.2

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   ..+ ++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.+||
T Consensus       481 ~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  557 (710)
T TIGR03796       481 RNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM  557 (710)
T ss_pred             EEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence            788888886   444 445555556789999999999999999999999999998 999999999988888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +|+.+ +.+..+.. .+..+.+  .+.++.  ...+++..+.|     ||||+||++|||+++ +|+
T Consensus       558 v~Q~~~lf~gTi~eNi~l-~~~~~~~~-~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~  635 (710)
T TIGR03796       558 VDQDIFLFEGTVRDNLTL-WDPTIPDA-DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS  635 (710)
T ss_pred             EecCChhhhccHHHHhhC-CCCCCCHH-HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence            999973       23323 23333222 1211111  223322  23466777766     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       636 iliLDEptS~LD~~t  650 (710)
T TIGR03796       636 ILILDEATSALDPET  650 (710)
T ss_pred             EEEEECccccCCHHH
Confidence            99999 888888643

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.87  E-value=1.4e-22  Score=178.40  Aligned_cols=142  Identities=18%  Similarity=0.040  Sum_probs=102.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-------  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|++|++.       
T Consensus        15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (242)
T TIGR03411        15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV   94 (242)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence            44555666667889999999999999999999999999998 999999887765444333 346999999852       


Q ss_pred             -HHHHhcCCCc----c----c-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 -RAVETGGCPH----A----A-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 -~~~~~~~~~~----~----~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                       +++.+.....    .    . .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++
T Consensus        95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L  174 (242)
T TIGR03411        95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM  174 (242)
T ss_pred             HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence             2222211100    0    0 011223345566666665555666666 999999999999999 89999999 99999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus       175 D~~~  178 (242)
T TIGR03411       175 TDEE  178 (242)
T ss_pred             CHHH
Confidence            8754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.7e-22  Score=180.37  Aligned_cols=141  Identities=17%  Similarity=0.054  Sum_probs=101.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHhccccCchhH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~ig~v~q~~~-----  138 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...    ....+++.+||++|++.     
T Consensus        21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~  100 (287)
T PRK13641         21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE  100 (287)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence            4566666677889999999999999999999999999998 9999999877432    12345567999999852     


Q ss_pred             ----HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.++... .....+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~  180 (287)
T PRK13641        101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG  180 (287)
T ss_pred             chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence                111111000 011111223345566666654 345666777 999999999999999 99999999 999998654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.87  E-value=1.1e-22  Score=174.05  Aligned_cols=139  Identities=16%  Similarity=0.030  Sum_probs=98.9

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR------  139 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~------  139 (275)
                      .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|+...      
T Consensus        12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv   90 (198)
T TIGR01189        12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSA   90 (198)
T ss_pred             CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcH
Confidence            345556666667889999999999999999999999999998 99999887765433 3455679999986421      


Q ss_pred             --HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 --AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 --~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        ++.+.......   ....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        91 ~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~  162 (198)
T TIGR01189        91 LENLHFWAAIHGG---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG  162 (198)
T ss_pred             HHHHHHHHHHcCC---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence              11110000000   011233455655555445666666 999999999999999 99999999 888888643

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.87  E-value=2.6e-22  Score=187.47  Aligned_cols=143  Identities=14%  Similarity=0.049  Sum_probs=105.4

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||+..     
T Consensus        24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~l  101 (375)
T PRK09452         24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHM  101 (375)
T ss_pred             ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCC
Confidence            33445555666667889999999999999999999999999998 9999999887654432  467999999863     


Q ss_pred             ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus       102 tv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~  179 (375)
T PRK09452        102 TVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL  179 (375)
T ss_pred             CHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence               2222221111 11111122344566666666667777777 999999999999999 99999999 899988653

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.87  E-value=2.5e-22  Score=179.81  Aligned_cols=143  Identities=20%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~----  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++.    
T Consensus        19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~   98 (269)
T PRK11831         19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD   98 (269)
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence            344555666667889999999999999999999999999998 9999988776544322   23557999999852    


Q ss_pred             ----HHHHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.+.....  .........+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  178 (269)
T PRK11831         99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT  178 (269)
T ss_pred             CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence                1221110000  11111112334456666665555666667 999999999999999 89999999 999998754

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=6.7e-22  Score=167.60  Aligned_cols=141  Identities=22%  Similarity=0.156  Sum_probs=110.0

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh--------H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER--------I  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~--------~  138 (275)
                      ++.+.+.++...+||+++|+||||||||||||.|+|.+.|+ |++.+.+.++.++.+.++.+.-+++||+.        .
T Consensus        14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~   93 (259)
T COG4559          14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ   93 (259)
T ss_pred             ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence            55555666666789999999999999999999999999998 99999999999999999999899999985        2


Q ss_pred             HHHHhcCCCccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCC
Q 023913          139 RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 ~~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d  206 (275)
                      +.+.+|..+...-   .++......+|..........+.+.+ |||++||+.+||.|+       ++.+++|| ||+.+|
T Consensus        94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD  173 (259)
T COG4559          94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD  173 (259)
T ss_pred             HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence            5667887776432   13333344456555444444555555 999999999999997       24589999 888888


Q ss_pred             cc
Q 023913          207 IP  208 (275)
Q Consensus       207 ~~  208 (275)
                      +.
T Consensus       174 i~  175 (259)
T COG4559         174 IA  175 (259)
T ss_pred             hH
Confidence            64

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.9e-22  Score=175.72  Aligned_cols=140  Identities=18%  Similarity=0.074  Sum_probs=101.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH-----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-----  140 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-----  140 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+     
T Consensus        15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~   94 (241)
T PRK14250         15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK   94 (241)
T ss_pred             CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence            344556666667889999999999999999999999999998 99999988876544455667899999986321     


Q ss_pred             --HHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 --VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +.+..... .  .....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        95 e~l~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  166 (241)
T PRK14250         95 DNIEYGPMLK-G--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS  166 (241)
T ss_pred             HHHhcchhhc-C--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence              11110000 0  1112233455555553 234555556 999999999999999 99999999 899998754

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.87  E-value=3.5e-22  Score=175.66  Aligned_cols=142  Identities=18%  Similarity=0.091  Sum_probs=102.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhccccCchhH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ...+++.++|++|++.      
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   93 (240)
T PRK09493         14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT   93 (240)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence            44555666666889999999999999999999999999998 99999988765422  2345567999999852      


Q ss_pred             --HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+....  ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  171 (240)
T PRK09493         94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL  171 (240)
T ss_pred             HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence              111111100  011111223344566666655555666666 999999999999999 99999999 999998754

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.9e-22  Score=175.51  Aligned_cols=143  Identities=18%  Similarity=0.088  Sum_probs=102.0

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH-------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI-------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~-------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... .++.++|++|++.       
T Consensus        16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T PRK10895         16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV   95 (241)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence            44555666666889999999999999999999999999998 99999888775544333 3467999999862       


Q ss_pred             -HHHHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 -RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 -~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       +++.+.....  ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...+
T Consensus        96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  173 (241)
T PRK10895         96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV  173 (241)
T ss_pred             HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence             1221111000  01111122344456666554444555666 999999999999999 99999999 8999997543

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.87  E-value=3.8e-22  Score=200.52  Aligned_cols=151  Identities=16%  Similarity=0.077  Sum_probs=114.8

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +..++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.+||+
T Consensus       477 ~~vsf~y~~---~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v  553 (708)
T TIGR01193       477 NDVSYSYGY---GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL  553 (708)
T ss_pred             EEEEEEcCC---CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence            678888875   455555666667889999999999999999999999999998 9999999999888888999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +|+.++..+..+..+ +..+.+  .+.++.  ...+++..+.|     |+||+||++||||++ +|+|
T Consensus       554 ~Q~~~lf~gTI~eNi~l~~~~~~~~~~-i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i  632 (708)
T TIGR01193       554 PQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV  632 (708)
T ss_pred             ecCceehhHHHHHHHhccCCCCCCHHH-HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence            99973       334343233333222 211111  222222  23456777766     999999999999999 8999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       633 liLDE~Ts~LD~~t  646 (708)
T TIGR01193       633 LILDESTSNLDTIT  646 (708)
T ss_pred             EEEeCccccCCHHH
Confidence            9999 888988653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.87  E-value=4.4e-22  Score=176.83  Aligned_cols=142  Identities=20%  Similarity=0.193  Sum_probs=104.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.        
T Consensus        14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (256)
T TIGR03873        14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR   93 (256)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence            44555666666889999999999999999999999999998 999998887765555555667999999852        


Q ss_pred             HHHHhcCCCccc-----hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHAA-----IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~~-----~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+.......     ..+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  172 (256)
T TIGR03873        94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA  172 (256)
T ss_pred             HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence            222222111100     011222344566666555555666666 999999999999999 89999999 999998654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=9.4e-22  Score=187.54  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=118.8

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      ++..+.||+   +.+++.+.++..++|+.++|+|++|||||||++.|+|+++|+ |+|.+++.+..+.++..++++++|+
T Consensus       324 ~~l~~~y~~---g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v  400 (559)
T COG4988         324 ENLSFRYPD---GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV  400 (559)
T ss_pred             cceEEecCC---CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence            466777777   556677777778889999999999999999999999999998 9999999999999999999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhhc-cccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~~-~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll  198 (275)
                      +|++.       +|+.+ +.+..+..+..+. ....+.++.. ..+.|..+.|     |+||+||+++||||+ +++++|
T Consensus       401 ~Q~p~lf~gTireNi~l-~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l  479 (559)
T COG4988         401 SQNPYLFAGTIRENILL-ARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL  479 (559)
T ss_pred             CCCCccccccHHHHhhc-cCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence            99983       23333 2333332222211 1224555544 3578888888     999999999999999 899999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| ||+++|...
T Consensus       480 lDEpTA~LD~et  491 (559)
T COG4988         480 LDEPTAHLDAET  491 (559)
T ss_pred             ecCCccCCCHhH
Confidence            99 899998654

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.1e-22  Score=178.39  Aligned_cols=151  Identities=17%  Similarity=0.050  Sum_probs=108.0

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGA  132 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~  132 (275)
                      ++.+.|++   ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...  ....+++.++|
T Consensus         6 ~l~~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   82 (275)
T PRK13639          6 DLKYSYPD---GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI   82 (275)
T ss_pred             EEEEEeCC---CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEE
Confidence            34455543   344666666677889999999999999999999999999998 9999998876421  22345678999


Q ss_pred             cCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          133 LPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       133 v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      ++|++.         +++.++... .....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus        83 v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD  162 (275)
T PRK13639         83 VFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD  162 (275)
T ss_pred             EeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999852         111111000 011111123345567777666566777777 999999999999999 89999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       163 EPt~gLD~~~  172 (275)
T PRK13639        163 EPTSGLDPMG  172 (275)
T ss_pred             CCCcCCCHHH
Confidence             999998654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=5.4e-22  Score=180.77  Aligned_cols=154  Identities=16%  Similarity=0.034  Sum_probs=105.9

Q ss_pred             cccccCCCCC-CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC-------------
Q 023913           56 HEPIYSPGYF-SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-------------  120 (275)
Q Consensus        56 ~~~~~~~~~~-~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~-------------  120 (275)
                      ++.+.|++.- ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+...             
T Consensus         7 ~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~   86 (305)
T PRK13651          7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEK   86 (305)
T ss_pred             EEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccc
Confidence            4456665410 0123555556666889999999999999999999999999998 999998655421             


Q ss_pred             -----------CChHHHHHhccccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-
Q 023913          121 -----------KEDGEFLMRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-  177 (275)
Q Consensus       121 -----------~~~~~~~~~ig~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-  177 (275)
                                 .....+++.+||+||++.         +++.++.... ....+....+.+.++.++.. ...++.+.+ 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L  166 (305)
T PRK13651         87 LVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL  166 (305)
T ss_pred             cccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence                       012455678999999751         1122211111 11112223455677777664 445666666 


Q ss_pred             ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+||++||++|+ +|+++|+| |++++|...
T Consensus       167 SgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~  200 (305)
T PRK13651        167 SGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG  200 (305)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence            999999999999999 99999999 899998653

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.1e-22  Score=181.55  Aligned_cols=155  Identities=15%  Similarity=0.000  Sum_probs=108.4

Q ss_pred             ccccccCCCCC-CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-----------
Q 023913           55 SHEPIYSPGYF-SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-----------  121 (275)
Q Consensus        55 ~~~~~~~~~~~-~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-----------  121 (275)
                      .++.+.|++.- ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...           
T Consensus        25 ~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~  104 (320)
T PRK13631         25 KNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPY  104 (320)
T ss_pred             EeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccccccc
Confidence            56667675410 0124566666667889999999999999999999999999998 9999998776532           


Q ss_pred             -----ChHHHHHhccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHH
Q 023913          122 -----EDGEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLA  184 (275)
Q Consensus       122 -----~~~~~~~~ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~  184 (275)
                           ....+++.+||++|++.         +++.++... .....+....+.+.++.+... ...+..+.+ |+||+||
T Consensus       105 ~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqR  184 (320)
T PRK13631        105 SKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRR  184 (320)
T ss_pred             ccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHH
Confidence                 12356678999999862         111121110 111122223445566666654 335555666 9999999


Q ss_pred             HHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          185 ANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       185 ~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++|||+|+ +|.++|+| |++++|...
T Consensus       185 vaiAraL~~~p~iLLLDEPtsgLD~~~  211 (320)
T PRK13631        185 VAIAGILAIQPEILIFDEPTAGLDPKG  211 (320)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHH
Confidence            99999999 99999999 899998654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.87  E-value=5.2e-22  Score=175.55  Aligned_cols=143  Identities=16%  Similarity=0.059  Sum_probs=101.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--------hHHHHHhccccCchhH
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEFLMRNGALPEERI  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--------~~~~~~~ig~v~q~~~  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....        ...+++.++|++|++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   95 (250)
T PRK11264         16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN   95 (250)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence            45566666666889999999999999999999999999998 99999887764321        1344567999999852


Q ss_pred             --------HHHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 --------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 --------~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                              +++.++..  ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++
T Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L  175 (250)
T PRK11264         96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL  175 (250)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence                    12211100  0011111112334456666555445666666 999999999999999 99999999 99999


Q ss_pred             Ccccc
Q 023913          206 KIPRK  210 (275)
Q Consensus       206 d~~~~  210 (275)
                      |...+
T Consensus       176 D~~~~  180 (250)
T PRK11264        176 DPELV  180 (250)
T ss_pred             CHHHH
Confidence            97543

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.87  E-value=1.6e-22  Score=173.57  Aligned_cols=136  Identities=14%  Similarity=-0.005  Sum_probs=98.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++.        
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~   91 (201)
T cd03231          13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVL   91 (201)
T ss_pred             ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHH
Confidence            44455556666789999999999999999999999999998 9999988776433 2355678999998752        


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+.. ...    ....+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        92 e~l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~  160 (201)
T cd03231          92 ENLRFWH-ADH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG  160 (201)
T ss_pred             HHHHhhc-ccc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence            1111111 100    112233455666554445555666 999999999999999 99999999 888988643

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=1.2e-22  Score=174.69  Aligned_cols=140  Identities=17%  Similarity=0.048  Sum_probs=100.3

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++.       
T Consensus        13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv   91 (204)
T PRK13538         13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTA   91 (204)
T ss_pred             CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcH
Confidence            344566666667889999999999999999999999999998 99999887765432 345567899988642       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.+..... .. .....+.+.++.+......+..+.+ |+||+||+++|++++ +|+++|+| |++++|...
T Consensus        92 ~e~l~~~~~~~-~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  164 (204)
T PRK13538         92 LENLRFYQRLH-GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG  164 (204)
T ss_pred             HHHHHHHHHhc-Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence             1111111000 00 1112334466666555445666666 999999999999999 99999999 888988654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.87  E-value=4.9e-22  Score=173.10  Aligned_cols=141  Identities=16%  Similarity=0.079  Sum_probs=98.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~-----  139 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|++|++..     
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   98 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR   98 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence            4455555666789999999999999999999999999998 999998887755432   3456679999998621     


Q ss_pred             -----HHHhcCCCc-cchHH-HHHH-HHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          140 -----AVETGGCPH-AAIRE-DISI-NLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       140 -----~~~~~~~~~-~~~~~-~~~~-~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                           ++.+..... ..... .... ..+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus        99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~  178 (228)
T cd03257          99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV  178 (228)
T ss_pred             CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence                 111110000 00111 1111 12455555442 234555666 999999999999999 89999999 8999887


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       179 ~~  180 (228)
T cd03257         179 SV  180 (228)
T ss_pred             HH
Confidence            54

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.87  E-value=8.6e-22  Score=193.77  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=112.0

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   ... .+.+.+...++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus       345 ~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~  421 (582)
T PRK11176        345 RNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL  421 (582)
T ss_pred             EEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence            677888876   434 444555566789999999999999999999999999998 999999999988888889999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +|+.++ .+.....+.+..+.+  .+.++.  ...+++..+.|     ||||+||++|||+++ +|+
T Consensus       422 v~Q~~~lf~~Ti~~Ni~~~-~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~  500 (582)
T PRK11176        422 VSQNVHLFNDTIANNIAYA-RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP  500 (582)
T ss_pred             EccCceeecchHHHHHhcC-CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence            999973       333332 222111122221111  222221  23456776666     999999999999999 899


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       501 ililDEptsaLD~~t  515 (582)
T PRK11176        501 ILILDEATSALDTES  515 (582)
T ss_pred             EEEEECccccCCHHH
Confidence            99999 888988654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.9e-22  Score=177.59  Aligned_cols=142  Identities=18%  Similarity=0.109  Sum_probs=100.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC------CChHHHHHhccccCchhHH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERIR-  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~~-  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..      .....+++.++|++|++.. 
T Consensus        15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   94 (242)
T PRK11124         15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW   94 (242)
T ss_pred             eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence            45566666667889999999999999999999999999998 999998877521      1123456679999998631 


Q ss_pred             -------HHHhcCCC--ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          140 -------AVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       140 -------~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                             ++....+.  .....+....+.+.++.++.....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus        95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~  174 (242)
T PRK11124         95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence                   11111000  011111122344456666555455666666 999999999999999 99999999 8999987


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       175 ~~  176 (242)
T PRK11124        175 EI  176 (242)
T ss_pred             HH
Confidence            54

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.87  E-value=2.4e-22  Score=172.26  Aligned_cols=138  Identities=10%  Similarity=-0.072  Sum_probs=99.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++.       
T Consensus        13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv   91 (200)
T PRK13540         13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTL   91 (200)
T ss_pred             CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCH
Confidence            345555666666889999999999999999999999999998 999998877653 23455678999998742       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.+..... .   ....+.+.++.+......++.+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        92 ~~~~~~~~~~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~  162 (200)
T PRK13540         92 RENCLYDIHFS-P---GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS  162 (200)
T ss_pred             HHHHHHHHhcC-c---chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence             1111110000 0   111234455555544445566666 999999999999999 99999999 888888643

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=8.2e-22  Score=178.23  Aligned_cols=154  Identities=15%  Similarity=0.036  Sum_probs=105.9

Q ss_pred             cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----CChHHHHHh
Q 023913           56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFLMR  129 (275)
Q Consensus        56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----~~~~~~~~~  129 (275)
                      ++.+.|++.-. ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..    .....+++.
T Consensus         6 ~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~   85 (288)
T PRK13643          6 KVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKK   85 (288)
T ss_pred             EEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhh
Confidence            45566653100 123566666667889999999999999999999999999998 999999887642    123456778


Q ss_pred             ccccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          130 NGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       130 ig~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      +||++|++.         +++.++.... ....+....+.+.++.+... ...+..+.+ |+||+||++||++|+ +|+|
T Consensus        86 ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~i  165 (288)
T PRK13643         86 VGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEV  165 (288)
T ss_pred             EEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence            999999752         1111111000 01111122344566666553 234566666 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       166 llLDEPt~gLD~~~  179 (288)
T PRK13643        166 LVLDEPTAGLDPKA  179 (288)
T ss_pred             EEEECCccCCCHHH
Confidence            9999 899998643

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.87  E-value=4.4e-22  Score=165.08  Aligned_cols=132  Identities=18%  Similarity=0.105  Sum_probs=105.2

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCC
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC  146 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~  146 (275)
                      .....|++++|+||+|||||||||+|+|+..|. |.|.+.+.|.....+.  .|-++++||+..        .++.+|..
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQEnNLFaHLtV~qNigLGl~   97 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLS   97 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhccccchhhhhhhhhcccCC
Confidence            345679999999999999999999999999998 9999999998766553  345788999864        34445666


Q ss_pred             CccchH-HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~-~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      |...+. ++...+..++.+++.....++++.+ |||||||+++||+|+ +.+|++|| |.+.+|+..
T Consensus        98 P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~L  164 (231)
T COG3840          98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL  164 (231)
T ss_pred             cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHH
Confidence            665543 3334556677788888888888888 999999999999999 78889999 777777543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-22  Score=178.93  Aligned_cols=143  Identities=15%  Similarity=0.046  Sum_probs=101.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~------  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......... ..++|++|++.      
T Consensus        17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (255)
T PRK11300         17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT   96 (255)
T ss_pred             CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence            344555666666789999999999999999999999999998 9999998877655443433 34788898752      


Q ss_pred             --HHHHhcCCC--------cc--------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          139 --RAVETGGCP--------HA--------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       139 --~~~~~~~~~--------~~--------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                        +++.++...        ..        ...+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|
T Consensus        97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  176 (255)
T PRK11300         97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM  176 (255)
T ss_pred             HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence              222221100        00        0011112334456666555555666667 999999999999999 899999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       177 lDEPt~~LD~~~  188 (255)
T PRK11300        177 LDEPAAGLNPKE  188 (255)
T ss_pred             EcCCccCCCHHH
Confidence            99 999999754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.7e-22  Score=173.19  Aligned_cols=142  Identities=19%  Similarity=0.090  Sum_probs=97.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~------  138 (275)
                      .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|++|++.      
T Consensus        17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (237)
T PRK11614         17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT   96 (237)
T ss_pred             CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence            344556666666889999999999999999999999999998 99999888776554433 4567999999752      


Q ss_pred             --HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++..... ..........+.+.++.+ ......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus        97 v~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~  172 (237)
T PRK11614         97 VEENLAMGGF-FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII  172 (237)
T ss_pred             HHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHH
Confidence              11111111 111111111122233333 122223344455 999999999999999 99999999 999999754

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=4.2e-22  Score=186.23  Aligned_cols=143  Identities=15%  Similarity=0.041  Sum_probs=105.5

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  .++.+||+||++.     
T Consensus        29 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~l  106 (377)
T PRK11607         29 FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHM  106 (377)
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCC
Confidence            33444555666666789999999999999999999999999998 999999887754432  4568999999863     


Q ss_pred             ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus       107 tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~  184 (377)
T PRK11607        107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKL  184 (377)
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence               2222221110 11111123345567777666666777777 999999999999999 99999999 899988654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1e-21  Score=176.93  Aligned_cols=155  Identities=13%  Similarity=-0.053  Sum_probs=108.2

Q ss_pred             ccccccCCCCC--CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhc
Q 023913           55 SHEPIYSPGYF--SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRN  130 (275)
Q Consensus        55 ~~~~~~~~~~~--~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~i  130 (275)
                      .+..+.|++.-  ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.+
T Consensus         8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i   87 (280)
T PRK13633          8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKA   87 (280)
T ss_pred             eeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhhe
Confidence            34455665310  0133555555566789999999999999999999999999998 99999988775432 24566789


Q ss_pred             cccCchhHHH---------HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          131 GALPEERIRA---------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       131 g~v~q~~~~~---------~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      ||+||++...         +.++.... ....+....+.+.++.++.....+..+.+ |+||+||++|||+|+ +|+++|
T Consensus        88 ~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  167 (280)
T PRK13633         88 GMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII  167 (280)
T ss_pred             EEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999986211         11110000 01111123345566766666666777777 999999999999999 899999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       168 lDEPt~gLD~~~  179 (280)
T PRK13633        168 FDEPTAMLDPSG  179 (280)
T ss_pred             EeCCcccCCHHH
Confidence            99 999998654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-22  Score=189.41  Aligned_cols=146  Identities=17%  Similarity=0.043  Sum_probs=106.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~  138 (275)
                      .|+...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+    ++.+||++|++.
T Consensus        37 ~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~  116 (400)
T PRK10070         37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA  116 (400)
T ss_pred             hcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence            333444555666666889999999999999999999999999998 999999988765544332    246999999852


Q ss_pred             --------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 --------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                              +++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|
T Consensus       117 l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD  196 (400)
T PRK10070        117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD  196 (400)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence                    2222211100 01111223345567777666666777777 999999999999999 99999999 899998


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       197 ~~~  199 (400)
T PRK10070        197 PLI  199 (400)
T ss_pred             HHH
Confidence            653

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.86  E-value=1.3e-22  Score=171.14  Aligned_cols=164  Identities=26%  Similarity=0.364  Sum_probs=115.6

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      +++.|.|+.||||||||+.++.......++.++.||++... |.++.+..|...     ....+||.||+.+.++..   
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v-----~~l~~gcicc~~~~~~~~---   72 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPV-----VELNNGCICCTLRDDLVE---   72 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EE-----EEECTTTESS-TTS-HHH---
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEE-----EEecCCCcccccHHHHHH---
Confidence            57899999999999999999983234489999999999764 666665443210     112579999997776654   


Q ss_pred             HHHHhhccc--ccccccccChhHHHHHHHH-------HHhc-CceEEEEeCCCCC---CccccccccccccCEEEEecCC
Q 023913          161 PLEELSNLF--KADLLLCESGGDNLAANFS-------RELA-DYIIYIIDVSGGD---KIPRKGGPGITQADLLVINKTD  227 (275)
Q Consensus       161 ~L~~l~~~~--~~d~~~~eS~G~~q~~~la-------ral~-~~~vlllD~t~g~---d~~~~~~~~i~~adiivlNK~D  227 (275)
                      .+..+....  .++++++|+.|...+..++       ..+. ++.|.++|+.++.   +.+..+..|++.||+||+||+|
T Consensus        73 ~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D  152 (178)
T PF02492_consen   73 ALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKID  152 (178)
T ss_dssp             HHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GG
T ss_pred             HHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccc
Confidence            555555555  7999999988876665552       1122 7899999996653   3344567899999999999999


Q ss_pred             CCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913          228 LASAIGADLAVMERDALRMRDGGPFIF  254 (275)
Q Consensus       228 l~~~~~~~~~~~~~~i~~~~~~~~ii~  254 (275)
                      +++.. ..++++++.++++||.++|+.
T Consensus       153 ~~~~~-~~i~~~~~~ir~lnp~a~Iv~  178 (178)
T PF02492_consen  153 LVSDE-QKIERVREMIRELNPKAPIVQ  178 (178)
T ss_dssp             GHHHH---HHHHHHHHHHH-TTSEEE-
T ss_pred             cCChh-hHHHHHHHHHHHHCCCCEEeC
Confidence            99882 245899999999999999973

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.86  E-value=1.7e-21  Score=195.46  Aligned_cols=151  Identities=22%  Similarity=0.205  Sum_probs=113.0

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   ..+ ++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus       467 ~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~  543 (694)
T TIGR03375       467 RNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY  543 (694)
T ss_pred             EEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence            788899986   444 444555556789999999999999999999999999998 999999999988888899999999


Q ss_pred             cCchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          133 LPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       133 v~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ++|++.      ..+...+.+..+..+ +..+.+  .+.++.  ...+++..+.|     |+||+||++|||+++ +|++
T Consensus       544 v~Q~~~lf~~TI~eNi~~~~~~~~~~~-i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i  622 (694)
T TIGR03375       544 VPQDPRLFYGTLRDNIALGAPYADDEE-ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI  622 (694)
T ss_pred             ECCChhhhhhhHHHHHhCCCCCCCHHH-HHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            999974      222222333333222 111111  222221  23456766666     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       623 liLDE~Ts~LD~~t  636 (694)
T TIGR03375       623 LLLDEPTSAMDNRS  636 (694)
T ss_pred             EEEeCCCCCCCHHH
Confidence            9999 888888643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=8.9e-22  Score=170.23  Aligned_cols=135  Identities=16%  Similarity=0.085  Sum_probs=97.4

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHH--------
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIR--------  139 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~--------  139 (275)
                      +.++...+ ++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....    ...+++.++|++|++..        
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            77777788 999999999999999999999999998 99999887664211    12345679999998521        


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.+..... ........+.+.++.+......+..+.+ |+||+||+.||++|+ +|+++|+| |++++|...
T Consensus        95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~  166 (214)
T cd03297          95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL  166 (214)
T ss_pred             HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            111111000 1111122344566666555445666666 999999999999999 89999999 999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.86  E-value=9.1e-22  Score=170.96  Aligned_cols=141  Identities=16%  Similarity=0.095  Sum_probs=101.5

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHHH----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA----  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~----  140 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   ..++.++|++|++..+    
T Consensus        19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   98 (220)
T TIGR02982        19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLT   98 (220)
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCC
Confidence            3455555556789999999999999999999999999998 9999988776543322   3456799999986321    


Q ss_pred             ----HHhcCCCc--cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 ----VETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 ----~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +.+.....  ....+....+.+.++.+......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus        99 ~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~  176 (220)
T TIGR02982        99 ARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS  176 (220)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence                11111100  11111223345566776665555666666 999999999999999 99999999 888888654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.86  E-value=2e-22  Score=176.09  Aligned_cols=141  Identities=18%  Similarity=0.031  Sum_probs=97.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhHHH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIRA-----  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~~-----  140 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... ..+.++|++|++..+     
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (230)
T TIGR03410        13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV   92 (230)
T ss_pred             eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence            44555666666889999999999999999999999999998 99999887776544433 345799999986311     


Q ss_pred             ---HHhcCCCccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          141 ---VETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       141 ---~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                         +.+.........  .....+.++.+. .....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...+
T Consensus        93 ~~~l~~~~~~~~~~~--~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~  167 (230)
T TIGR03410        93 EENLLTGLAALPRRS--RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII  167 (230)
T ss_pred             HHHHHHHHHhcCcch--HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence               111100000000  011122333332 22234555556 999999999999999 99999999 9999997653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.86  E-value=9.9e-22  Score=191.34  Aligned_cols=149  Identities=22%  Similarity=0.256  Sum_probs=110.3

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.||+   ..+ ++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus       324 ~~v~f~y~~---~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~  400 (529)
T TIGR02857       324 SGLSVAYPG---RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW  400 (529)
T ss_pred             EEEEEECCC---CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence            678888987   443 455555566789999999999999999999999999998 999999999988888889999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ++|++.       +++.++ .+..+. +.+..+.+  .+.++..  ..++|..+.|     ||||+||+++||+++ +|+
T Consensus       401 v~Q~~~lf~~ti~~Ni~~~-~~~~~~-~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~  478 (529)
T TIGR02857       401 VPQHPFLFAGTIAENIRLA-RPDASD-AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP  478 (529)
T ss_pred             EcCCCcccCcCHHHHHhcc-CCCCCH-HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence            999973       233232 222222 12211111  2222211  2345666655     999999999999999 899


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      ++|+| ||+++|..
T Consensus       479 ililDE~ts~lD~~  492 (529)
T TIGR02857       479 LLLLDEPTAHLDAE  492 (529)
T ss_pred             EEEEeCcccccCHH
Confidence            99999 88787753

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.86  E-value=1.1e-21  Score=169.29  Aligned_cols=135  Identities=19%  Similarity=0.119  Sum_probs=98.5

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~  143 (275)
                      +.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++.        +++.+
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence            555666789999999999999999999999999998 999998887754332  2467999999853        22222


Q ss_pred             cCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ........ ......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~  163 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL  163 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            11111111 11122344566666655555666666 999999999999999 89999999 899988654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.5e-21  Score=176.03  Aligned_cols=152  Identities=17%  Similarity=0.077  Sum_probs=107.2

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCChHHHHHhcc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRNG  131 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~~~~~~~~ig  131 (275)
                      +..+.|++.  .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+    |+|.+.+.++.......+++.+|
T Consensus        10 ~l~~~~~~~--~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig   87 (282)
T PRK13640         10 HVSFTYPDS--KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG   87 (282)
T ss_pred             EEEEEcCCC--CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence            344555430  134555666666889999999999999999999999999885    68999888876544455667899


Q ss_pred             ccCchhHH---------HHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          132 ALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       132 ~v~q~~~~---------~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      |++|++..         ++.+..... ....+....+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+
T Consensus        88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll  167 (282)
T PRK13640         88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL  167 (282)
T ss_pred             EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99998621         111110000 11111123344566766665556666666 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | |++++|...
T Consensus       168 DEPt~gLD~~~  178 (282)
T PRK13640        168 DESTSMLDPAG  178 (282)
T ss_pred             ECCcccCCHHH
Confidence            9 899998654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.1e-21  Score=176.61  Aligned_cols=154  Identities=15%  Similarity=0.027  Sum_probs=103.9

Q ss_pred             cccccCCCCCC-CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC----ChHHHHHh
Q 023913           56 HEPIYSPGYFS-RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLMR  129 (275)
Q Consensus        56 ~~~~~~~~~~~-~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~----~~~~~~~~  129 (275)
                      ++.+.|++... ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...    ....+++.
T Consensus         7 ~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~   86 (280)
T PRK13649          7 NVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKK   86 (280)
T ss_pred             EEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhh
Confidence            44555654110 123555555566789999999999999999999999999998 9999988876542    12345677


Q ss_pred             ccccCchhH---------HHHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       130 ig~v~q~~~---------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      ++|++|++.         +++.+.... .....+....+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|++
T Consensus        87 i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  166 (280)
T PRK13649         87 VGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKI  166 (280)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            999999852         111111000 011111112233455555554 234566666 999999999999999 8999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       167 llLDEPt~~LD~~~  180 (280)
T PRK13649        167 LVLDEPTAGLDPKG  180 (280)
T ss_pred             EEEeCCcccCCHHH
Confidence            9999 999998654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.86  E-value=1.3e-21  Score=174.99  Aligned_cols=141  Identities=13%  Similarity=0.026  Sum_probs=99.3

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (275)
                      .++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.++|++|++..        
T Consensus        27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv  106 (267)
T PRK15112         27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI  106 (267)
T ss_pred             ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence            3555666666789999999999999999999999999998 9999988777533333344579999998521        


Q ss_pred             --HHHhcCCC--ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 --AVETGGCP--HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 --~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        ++......  .....+....+.+.++.+... ...+..+.+ |+||+||++||++|+ +|+|+||| |++++|...
T Consensus       107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~  184 (267)
T PRK15112        107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM  184 (267)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence              11111000  011111122344566666552 334555556 999999999999999 99999999 899998754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.86  E-value=1.5e-21  Score=191.99  Aligned_cols=150  Identities=17%  Similarity=0.133  Sum_probs=112.4

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +. .++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus       342 ~~v~f~y~~---~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~  418 (574)
T PRK11160        342 NNVSFTYPD---QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV  418 (574)
T ss_pred             EEEEEECCC---CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence            778888876   43 3555555566789999999999999999999999999998 999999999988888889999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc-cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~-~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ++|++.       +|+.+ +++..+.. ....+.+  .+.++.. ..++|..+.|     |+||+||++|||+++ +|++
T Consensus       419 v~Q~~~lf~~ti~~Ni~~-~~~~~~~~-~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i  496 (574)
T PRK11160        419 VSQRVHLFSATLRDNLLL-AAPNASDE-ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL  496 (574)
T ss_pred             EcccchhhcccHHHHhhc-CCCccCHH-HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            999973       22222 23322221 1211111  2333322 3456676666     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       497 lilDE~ts~lD~~t  510 (574)
T PRK11160        497 LLLDEPTEGLDAET  510 (574)
T ss_pred             EEEeCCcccCCHHH
Confidence            9999 888888654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.86  E-value=2.1e-22  Score=179.25  Aligned_cols=141  Identities=17%  Similarity=0.066  Sum_probs=100.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|+    ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++     ..+++.++|+
T Consensus        16 ~~l~~~~~----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i~~v   86 (257)
T PRK11247         16 NAVSKRYG----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDTRLM   86 (257)
T ss_pred             EEEEEEEC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCceEEE
Confidence            34444443    345555666667889999999999999999999999999998 9998755432     2345679999


Q ss_pred             CchhHH--------HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          134 PEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       134 ~q~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      +|++..        ++.+...  .   .....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        87 ~q~~~l~~~~tv~enl~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247         87 FQDARLLPWKKVIDNVGLGLK--G---QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             ecCccCCCCCcHHHHHHhccc--c---hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            998521        1111110  0   0112334466666655555666666 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       162 ~~LD~~~  168 (257)
T PRK11247        162 GALDALT  168 (257)
T ss_pred             CCCCHHH
Confidence            9998754

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.86  E-value=1.5e-21  Score=192.33  Aligned_cols=151  Identities=19%  Similarity=0.157  Sum_probs=112.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.||+   +...+.+.+....+|++++|+|++|||||||+++|+|+++|+ |.|.+++.++.+.+...+++.++|+
T Consensus       338 ~~vsf~y~~---~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v  414 (588)
T PRK13657        338 DDVSFSYDN---SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV  414 (588)
T ss_pred             EEEEEEeCC---CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            677788876   444555666667889999999999999999999999999998 9999999999888888999999999


Q ss_pred             CchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      ||++.      +.+...+++..+.. ....+.+  .++.+.  ...+++..+.+     ||||+||++|||+|+ +|+|+
T Consensus       415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~-~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il  493 (588)
T PRK13657        415 FQDAGLFNRSIEDNIRVGRPDATDE-EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL  493 (588)
T ss_pred             ecCcccccccHHHHHhcCCCCCCHH-HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99973      22222233333322 1211111  223222  12345665554     999999999999999 89999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| ||+++|...
T Consensus       494 iLDEpts~LD~~t  506 (588)
T PRK13657        494 ILDEATSALDVET  506 (588)
T ss_pred             EEeCCccCCCHHH
Confidence            999 888988643

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.86  E-value=1.3e-21  Score=193.06  Aligned_cols=149  Identities=15%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.||+   +..++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|+
T Consensus       344 ~~v~f~y~~---~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v  420 (592)
T PRK10790        344 DNVSFAYRD---DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV  420 (592)
T ss_pred             EEEEEEeCC---CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence            677788876   444555555666789999999999999999999999999998 9999999999888888999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +|+.++ . ..+. +....+.+  .+.++.  ...+++..+.|     ||||+||++|||+++ +|+|
T Consensus       421 ~Q~~~lF~~Ti~~NI~~~-~-~~~d-~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i  497 (592)
T PRK10790        421 QQDPVVLADTFLANVTLG-R-DISE-EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI  497 (592)
T ss_pred             ccCCccccchHHHHHHhC-C-CCCH-HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            99973       333333 2 2221 12211111  222221  23356666655     999999999999999 8999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       498 lllDEpts~LD~~t  511 (592)
T PRK10790        498 LILDEATANIDSGT  511 (592)
T ss_pred             EEEeCCcccCCHHH
Confidence            9999 888888643

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.86  E-value=9.3e-22  Score=181.11  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=102.5

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------  138 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++.      
T Consensus        35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  114 (331)
T PRK15079         35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR  114 (331)
T ss_pred             EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence            3555666667889999999999999999999999999998 9999999888665433   34567999999862      


Q ss_pred             ----HHHHhcCC---CccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          139 ----RAVETGGC---PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 ----~~~~~~~~---~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                          +++.....   ......+....+.+.++.+.+. ...+..+.+ |+||+||++|||+|+ +|.++|+| |++++|.
T Consensus       115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~  194 (331)
T PRK15079        115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV  194 (331)
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence                11111100   0111112223344566666653 245666677 999999999999999 99999999 8999986


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       195 ~~  196 (331)
T PRK15079        195 SI  196 (331)
T ss_pred             HH
Confidence            43

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.4e-21  Score=175.70  Aligned_cols=153  Identities=13%  Similarity=-0.059  Sum_probs=105.5

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++. ....++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++
T Consensus         9 ~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~   87 (277)
T PRK13642          9 NLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVF   87 (277)
T ss_pred             EEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEE
Confidence            445555530 0112455555566889999999999999999999999999998 99999988876544445667899999


Q ss_pred             chhH-HHHHhcCCCc---------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          135 EERI-RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       135 q~~~-~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      |++. .+.......+         ....+....+...++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |
T Consensus        88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP  167 (277)
T PRK13642         88 QNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES  167 (277)
T ss_pred             ECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9862 1111111000         11111112334455555554445555666 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       168 t~~LD~~~  175 (277)
T PRK13642        168 TSMLDPTG  175 (277)
T ss_pred             cccCCHHH
Confidence            99998654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.86  E-value=1.4e-21  Score=196.47  Aligned_cols=152  Identities=14%  Similarity=0.082  Sum_probs=112.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+++|.||+. ++..++.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.+...++++++|+
T Consensus       482 ~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v  560 (711)
T TIGR00958       482 QDVSFSYPNR-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV  560 (711)
T ss_pred             EEEEEECCCC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence            7888999861 0123455555566789999999999999999999999999998 9999999999888888899999999


Q ss_pred             CchhH------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      +|++.      +.+...+++.++.. .+..+.+  .+.++.  ...+++..+.|     |+||+||++|||+++ +|+|+
T Consensus       561 ~Q~~~lF~gTIreNI~~g~~~~~~e-~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL  639 (711)
T TIGR00958       561 GQEPVLFSGSVRENIAYGLTDTPDE-EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL  639 (711)
T ss_pred             ecCccccccCHHHHHhcCCCCCCHH-HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            99973      22223233433322 2211111  122221  13356666665     999999999999999 89999


Q ss_pred             EEe-CCCCCCcc
Q 023913          198 IID-VSGGDKIP  208 (275)
Q Consensus       198 llD-~t~g~d~~  208 (275)
                      |+| ||+++|..
T Consensus       640 ILDEpTSaLD~~  651 (711)
T TIGR00958       640 ILDEATSALDAE  651 (711)
T ss_pred             EEEccccccCHH
Confidence            999 88888864

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.86  E-value=6.5e-22  Score=184.03  Aligned_cols=141  Identities=16%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C--CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      ...++.+.++...+|++++|+|||||||||||++|+|+++| .  |+|.+.+.++....+  ..+.+||++|++.     
T Consensus        17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~   94 (362)
T TIGR03258        17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHL   94 (362)
T ss_pred             CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCC
Confidence            34455566666678999999999999999999999999987 4  899998888754333  3467999999863     


Q ss_pred             ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~  172 (362)
T TIGR03258        95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI  172 (362)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence               2222221110 11111223445567777776667777778 999999999999999 99999999 899988653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=9e-22  Score=165.15  Aligned_cols=145  Identities=21%  Similarity=0.165  Sum_probs=121.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      +|+...++.+.+...++|.+++|+|||||||||||.+++.+++.+ |.|.+.+.++..++..++.++++++-|+..    
T Consensus        10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r   89 (252)
T COG4604          10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR   89 (252)
T ss_pred             hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence            455566666666677889999999999999999999999999998 999999999999988899999999988763    


Q ss_pred             ----HHHHhcCCCccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ----RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ----~~~~~~~~~~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                          +.+.+|.+|+..-   .++...+.++++.+.+....++.+.| ||||+||+.+|..++ +.+.++|| |.+.+|..
T Consensus        90 lTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmk  169 (252)
T COG4604          90 LTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK  169 (252)
T ss_pred             eEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchH
Confidence                3445777776532   35555667788888788778888888 999999999999999 89999999 88888853

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=1.5e-21  Score=173.53  Aligned_cols=143  Identities=19%  Similarity=0.118  Sum_probs=100.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHH----HHhccccCch
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEE  136 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~----~~~ig~v~q~  136 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+     +.......+    ++.++|++|+
T Consensus        18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~   97 (258)
T PRK11701         18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH   97 (258)
T ss_pred             CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence            344555666667889999999999999999999999999998 999998877     554433332    3469999998


Q ss_pred             hHH----------HHHhc--CCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          137 RIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       137 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +..          ++...  .............+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+|+|+| 
T Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE  177 (258)
T PRK11701         98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE  177 (258)
T ss_pred             cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            621          11100  0000011111223344566665532 34566666 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       178 Pt~~LD~~~  186 (258)
T PRK11701        178 PTGGLDVSV  186 (258)
T ss_pred             CcccCCHHH
Confidence            999998754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.86  E-value=9e-22  Score=183.89  Aligned_cols=146  Identities=18%  Similarity=0.013  Sum_probs=106.9

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec----cCCCCChHHH---H-HhccccC
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALP  134 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~----d~~~~~~~~~---~-~~ig~v~  134 (275)
                      +|+...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.    ++.......+   + +.++|+|
T Consensus        33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf  112 (382)
T TIGR03415        33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF  112 (382)
T ss_pred             hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence            344566677777777889999999999999999999999999998 99999875    4433333332   2 4699999


Q ss_pred             chhH--------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          135 EERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       135 q~~~--------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      |++.        +++.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+|+ +|+|+|+| |+
T Consensus       113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt  192 (382)
T TIGR03415       113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF  192 (382)
T ss_pred             CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            9863        2222221100 11111223445677777776667777777 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       193 s~LD~~~  199 (382)
T TIGR03415       193 SALDPLI  199 (382)
T ss_pred             ccCCHHH
Confidence            9988653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.2e-21  Score=173.14  Aligned_cols=142  Identities=18%  Similarity=0.119  Sum_probs=99.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|      .|+|.+.+.++...  ....+++.++|+||++. 
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   93 (247)
T TIGR00972        14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP   93 (247)
T ss_pred             eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence            4455566666788999999999999999999999999976      58999988776542  23345678999999852 


Q ss_pred             ------HHHHhcCCCc--cchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH--AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+.....  ....+....+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus        94 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  173 (247)
T TIGR00972        94 FPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS  173 (247)
T ss_pred             CCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                  1111110000  01111122334456666554    344555666 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       174 ~LD~~~  179 (247)
T TIGR00972       174 ALDPIA  179 (247)
T ss_pred             cCCHHH
Confidence            998754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.6e-21  Score=168.69  Aligned_cols=147  Identities=22%  Similarity=0.118  Sum_probs=115.5

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~---  138 (275)
                      +|.+++.+.+.+-..++|+-.+|+|+|||||||||++++|.+.|+ |.+.+.+..++...- .+++++||++...--   
T Consensus        40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~  119 (257)
T COG1119          40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF  119 (257)
T ss_pred             EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence            344577777777778889999999999999999999999999998 999999999987654 789999999875431   


Q ss_pred             ------HHHHhcC-C-----Cc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ------RAVETGG-C-----PH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ------~~~~~~~-~-----~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                            +.+-+++ .     .. .....+...+...++.++.....++.+.. |.||+||+.|||||+ +|.++||| |+
T Consensus       120 ~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~  199 (257)
T COG1119         120 RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA  199 (257)
T ss_pred             ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence                  1111111 1     11 12234455566678888888788888888 999999999999999 99999999 89


Q ss_pred             CCCCcccc
Q 023913          203 GGDKIPRK  210 (275)
Q Consensus       203 ~g~d~~~~  210 (275)
                      +|+|...+
T Consensus       200 ~GLDl~~r  207 (257)
T COG1119         200 QGLDLIAR  207 (257)
T ss_pred             ccCChHHH
Confidence            99987654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.86  E-value=2.5e-21  Score=168.98  Aligned_cols=139  Identities=19%  Similarity=0.122  Sum_probs=94.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV------  141 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~------  141 (275)
                      .++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+.      
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~   96 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN   96 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence            4555666667789999999999999999999999999998 999998877655445556677999999863211      


Q ss_pred             -HhcCCCccchHHHHHHHHH--HHHHhh------ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 -ETGGCPHAAIREDISINLG--PLEELS------NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~--~L~~l~------~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       .+. ..... ........+  .+..+.      .....+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus        97 ~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~  174 (229)
T cd03254          97 IRLG-RPNAT-DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET  174 (229)
T ss_pred             Hhcc-CCCCC-HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence             111 11111 111111110  111111      11112233445 999999999999999 99999999 899999754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.7e-21  Score=182.38  Aligned_cols=152  Identities=20%  Similarity=0.171  Sum_probs=119.5

Q ss_pred             ccccccCCCCCCCCCCcc-ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+++|.|||   ....++ +.++...+||.++|+|++|||||||++.|+|.++|+ |+|.+.+.++...++.++++.+++
T Consensus       340 ~~vsF~y~~---~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~v  416 (573)
T COG4987         340 RNVSFTYPG---QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV  416 (573)
T ss_pred             ccceeecCC---CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhh
Confidence            788899999   664444 555556779999999999999999999999999999 999999999998888889999999


Q ss_pred             cCchh------HHHHHhcCCCccchHHHHHHH-HHHHHHhhcc--ccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          133 LPEER------IRAVETGGCPHAAIREDISIN-LGPLEELSNL--FKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       133 v~q~~------~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~~--~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      ++|..      .+++....++..+..+..+.. .-.|+++...  ++++..+.|     |||++||++|||+|+ +.+++
T Consensus       417 l~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~  496 (573)
T COG4987         417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW  496 (573)
T ss_pred             hccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence            99976      345555566666544332211 1144444333  256666776     999999999999999 89999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      +|| ||.|+|...
T Consensus       497 lLDEPTegLD~~T  509 (573)
T COG4987         497 LLDEPTEGLDPIT  509 (573)
T ss_pred             EecCCcccCChhh
Confidence            999 999999754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=178.60  Aligned_cols=141  Identities=16%  Similarity=0.058  Sum_probs=104.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~-----  139 (275)
                      .++.++++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|+||++..     
T Consensus        29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~  108 (327)
T PRK11308         29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR  108 (327)
T ss_pred             eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence            4566666667889999999999999999999999999998 9999999888665432   345679999998621     


Q ss_pred             -----HHHhcC--CCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          140 -----AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       140 -----~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                           ++....  .......+....+.+.|+.+++. ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus       109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~  188 (327)
T PRK11308        109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS  188 (327)
T ss_pred             cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence                 111000  00111122223455677777664 245777777 999999999999999 99999999 89999864


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       189 ~  189 (327)
T PRK11308        189 V  189 (327)
T ss_pred             H
Confidence            3

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.4e-21  Score=179.72  Aligned_cols=140  Identities=14%  Similarity=0.083  Sum_probs=101.4

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHH----HhccccCchhHH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~  139 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|++++    + |+|.+.+.++......+++    +.++|+||++..
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            466666677788999999999999999999999999873    6 9999999888766544433    259999998631


Q ss_pred             ----------HHHhcCCC--ccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          140 ----------AVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       140 ----------~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                                ++......  .....+....+.+.|+.+.+..   ..+..+.+ |+||+||++|||+|+ +|+|+|+| |
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP  180 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP  180 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                      11000000  0111122234555677766542   24556667 999999999999999 99999999 8


Q ss_pred             CCCCCcc
Q 023913          202 SGGDKIP  208 (275)
Q Consensus       202 t~g~d~~  208 (275)
                      ++++|..
T Consensus       181 ts~LD~~  187 (326)
T PRK11022        181 TTALDVT  187 (326)
T ss_pred             CCCCCHH
Confidence            9999864

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.1e-22  Score=177.18  Aligned_cols=137  Identities=17%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...     ...++|++|++.        
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~~~~~~tv~   88 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEGLLPWRNVQ   88 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCccCCCCcHH
Confidence            44555666666889999999999999999999999999998 9999988776432     134799998752        


Q ss_pred             HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~  163 (255)
T PRK11248         89 DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT  163 (255)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence            1111110000 11111123344566666555445555666 999999999999999 89999999 999999754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.86  E-value=4.9e-21  Score=179.48  Aligned_cols=157  Identities=21%  Similarity=0.245  Sum_probs=114.5

Q ss_pred             ccCCCCCCC---ccccccCCCCCCCCCCcccccccc-CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           46 HSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        46 ~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      ...+.-+|.   +...+--|+   .+++.+...+|. .+|+.++|+||+|||||||.|+|.|..+|. |.|.+++.++.+
T Consensus       326 m~LP~P~g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q  402 (580)
T COG4618         326 MPLPAPQGALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ  402 (580)
T ss_pred             CCCCCCCceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence            344445555   444555577   666677666665 669999999999999999999999999998 999999999999


Q ss_pred             CChHHHHHhccccCchhH-------HHHH-hcCCCccchHHHH-HHHHHHHHHh--hccccccccccc-----ChhHHHH
Q 023913          121 KEDGEFLMRNGALPEERI-------RAVE-TGGCPHAAIREDI-SINLGPLEEL--SNLFKADLLLCE-----SGGDNLA  184 (275)
Q Consensus       121 ~~~~~~~~~ig~v~q~~~-------~~~~-~~~~~~~~~~~~~-~~~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~  184 (275)
                      ++..++-+.|||+||+..       +|+. +..  ......-. +.......++  ....++|..+.|     |+|||||
T Consensus       403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQR  480 (580)
T COG4618         403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR  480 (580)
T ss_pred             CCHHHhccccCcCcccceecCCcHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHH
Confidence            999999999999999853       2221 111  11111111 1111122333  235688999988     9999999


Q ss_pred             HHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          185 ANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       185 ~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      +++||||. +|.+++|| |.+.+|.
T Consensus       481 IaLARAlYG~P~lvVLDEPNsNLD~  505 (580)
T COG4618         481 IALARALYGDPFLVVLDEPNSNLDS  505 (580)
T ss_pred             HHHHHHHcCCCcEEEecCCCCCcch
Confidence            99999999 99999999 5556664

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.86  E-value=2.4e-21  Score=169.96  Aligned_cols=139  Identities=17%  Similarity=0.126  Sum_probs=94.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~  140 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..       +
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n   95 (237)
T cd03252          16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN   95 (237)
T ss_pred             cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHH
Confidence            3444555556789999999999999999999999999998 9999988776554445566779999998631       1


Q ss_pred             HHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 VETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +.+. ...... .....      ..+.++.+  ......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        96 l~~~-~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~  173 (237)
T cd03252          96 IALA-DPGMSM-ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES  173 (237)
T ss_pred             hhcc-CCCCCH-HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            1111 111111 11111      01122222  111122334455 999999999999999 99999999 999998754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=175.71  Aligned_cols=140  Identities=14%  Similarity=0.020  Sum_probs=98.2

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----C-ChHHHHHhccccCchhHH----
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K-EDGEFLMRNGALPEERIR----  139 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----~-~~~~~~~~ig~v~q~~~~----  139 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..    . ....+++.++|++|++..    
T Consensus        26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  105 (289)
T PRK13645         26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ  105 (289)
T ss_pred             eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh
Confidence            555666666889999999999999999999999999998 999998877642    1 123456679999998521    


Q ss_pred             -----HHHhcCCC-ccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 -----AVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 -----~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           ++.+.... ..........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       106 ~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~  185 (289)
T PRK13645        106 ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKG  185 (289)
T ss_pred             hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence                 11111000 011111112333455555542 345566666 999999999999999 99999999 999998654

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.85  E-value=3e-21  Score=189.39  Aligned_cols=151  Identities=19%  Similarity=0.183  Sum_probs=111.3

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   ..+ .+.+.++..++|++++|+|++|||||||+++|+|+++|+ |+|.+.+.++...+..++++.++|
T Consensus       334 ~~v~f~y~~---~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~  410 (571)
T TIGR02203       334 RNVTFRYPG---RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL  410 (571)
T ss_pred             EEEEEEcCC---CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence            677888876   333 444555556789999999999999999999999999998 999999999888888888999999


Q ss_pred             cCchhH------HHHHhcCCC-ccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI------RAVETGGCP-HAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~------~~~~~~~~~-~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.      +.+...+.+ ..+. +.+..+.+  .+.++..  ..++|..+.|     |+||+||++|||+++ +|+
T Consensus       411 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~-~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~  489 (571)
T TIGR02203       411 VSQDVVLFNDTIANNIAYGRTEQADR-AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP  489 (571)
T ss_pred             EccCcccccccHHHHHhcCCCCCCCH-HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            999973      222222322 2222 22222111  2333222  2356666665     999999999999999 899


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       490 illLDEpts~LD~~~  504 (571)
T TIGR02203       490 ILILDEATSALDNES  504 (571)
T ss_pred             EEEEeCccccCCHHH
Confidence            99999 888888643

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.85  E-value=7.8e-22  Score=172.06  Aligned_cols=149  Identities=15%  Similarity=0.046  Sum_probs=103.8

Q ss_pred             ccccccCCCCCCC---CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHH
Q 023913           55 SHEPIYSPGYFSR---RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFL  127 (275)
Q Consensus        55 ~~~~~~~~~~~~~---~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~  127 (275)
                      +++.+.|++   +   ..++.+.++...+|++++|+||||||||||+++|+|+++   |+ |+|.+.+.++.   ...++
T Consensus         7 ~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           7 WDVGLKAKN---WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ecceeeeec---CccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            567788887   4   345555556668899999999999999999999999998   77 99999887653   23456


Q ss_pred             HhccccCchhH--------HHHHhcCCCcc---chHHHH-HHHHH-HHHHhhccccccccccc-ChhHHHHHHHHHHhc-
Q 023913          128 MRNGALPEERI--------RAVETGGCPHA---AIREDI-SINLG-PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-  192 (275)
Q Consensus       128 ~~ig~v~q~~~--------~~~~~~~~~~~---~~~~~~-~~~~~-~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-  192 (275)
                      +.++|++|++.        +++.+......   ...... ..... .++.+......+..+.+ |+||+||+++||+|+ 
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  160 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW  160 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence            67999999852        22221100000   000001 11122 45555444444555666 999999999999999 


Q ss_pred             CceEEEEe-CCCCCCccc
Q 023913          193 DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 ~~~vlllD-~t~g~d~~~  209 (275)
                      +|+++|+| |++++|...
T Consensus       161 ~p~illlDEP~~gLD~~~  178 (226)
T cd03234         161 DPKVLILDEPTSGLDSFT  178 (226)
T ss_pred             CCCEEEEeCCCcCCCHHH
Confidence            99999999 888988643

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=2.2e-21  Score=172.88  Aligned_cols=138  Identities=21%  Similarity=0.092  Sum_probs=110.2

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH----HhccccCchhH-------
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI-------  138 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~-------  138 (275)
                      +.+.++....||++.|+|-+|||||||++++.++++|+ |+|.+.+.|+...++++++    +++++|||.+.       
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtV  123 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTV  123 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhH
Confidence            34455556779999999999999999999999999999 9999999999988876654    46999999863       


Q ss_pred             -HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 -RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 -~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                       ++..++..... ...+....+.+.|+.+++....+.++.| ||||+||+.|||||+ +|+|+|+| |.+.+|+.
T Consensus       124 l~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL  198 (386)
T COG4175         124 LENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL  198 (386)
T ss_pred             hhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence             23333332222 1233345667788888888888888989 999999999999999 99999999 77777764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.85  E-value=6e-22  Score=175.48  Aligned_cols=142  Identities=16%  Similarity=0.095  Sum_probs=100.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-------------hHHHHHhcccc
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGAL  133 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-------------~~~~~~~ig~v  133 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....             ...+++.++|+
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v   92 (252)
T TIGR03005        13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV   92 (252)
T ss_pred             eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence            44555666667889999999999999999999999999998 99999887764321             12445679999


Q ss_pred             CchhH--------HHHHhcCC--CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          134 PEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~--~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +|++.        +++.++..  ...........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus        93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  172 (252)
T TIGR03005        93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE  172 (252)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            99852        11111100  0001111112334456666555445566666 999999999999999 89999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       173 P~~~LD~~~  181 (252)
T TIGR03005       173 VTSALDPEL  181 (252)
T ss_pred             CcccCCHHH
Confidence            899998754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=188.02  Aligned_cols=143  Identities=15%  Similarity=0.070  Sum_probs=104.3

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++........ ++.++|++|++.      
T Consensus        16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK10762         16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT   95 (501)
T ss_pred             CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence            444555666666789999999999999999999999999998 999998887654333332 356999999852      


Q ss_pred             --HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 --RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 --~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                        +++.++....     .........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++||| |++++|..
T Consensus        96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  175 (501)
T PRK10762         96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT  175 (501)
T ss_pred             HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence              2222221110     01111123345567777766666777777 999999999999999 99999999 99999875


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       176 ~  176 (501)
T PRK10762        176 E  176 (501)
T ss_pred             H
Confidence            4

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.85  E-value=3.7e-21  Score=168.36  Aligned_cols=139  Identities=18%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~  140 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.       ++
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en   95 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN   95 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence            4555555666789999999999999999999999999998 999998877655444556778999999852       22


Q ss_pred             HHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 VETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +.+... .... .....      ..+.++.+  ......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...
T Consensus        96 l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  173 (234)
T cd03251          96 IAYGRP-GATR-EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES  173 (234)
T ss_pred             hhccCC-CCCH-HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            222111 1111 11111      11222222  112223344445 999999999999999 89999999 999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.85  E-value=3.6e-21  Score=168.70  Aligned_cols=148  Identities=17%  Similarity=0.149  Sum_probs=98.7

Q ss_pred             ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCc
Q 023913           57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (275)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (275)
                      ..+.|++   .+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus         6 l~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   82 (236)
T cd03253           6 VTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ   82 (236)
T ss_pred             EEEEeCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence            3444543   344555666666889999999999999999999999999998 999998877765555556678999999


Q ss_pred             hhHHH-------HHhcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          136 ERIRA-------VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       136 ~~~~~-------~~~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      ++..+       +.+. ...... ......      .+.+..+  ......+..+.+ |+||+||++|||+|+ +|+++|
T Consensus        83 ~~~~~~~tv~~nl~~~-~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll  160 (236)
T cd03253          83 DTVLFNDTIGYNIRYG-RPDATD-EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL  160 (236)
T ss_pred             CChhhcchHHHHHhhc-CCCCCH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            86321       1111 111111 111110      1111111  011112223344 999999999999999 899999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       161 lDEP~~~LD~~~  172 (236)
T cd03253         161 LDEATSALDTHT  172 (236)
T ss_pred             EeCCcccCCHHH
Confidence            99 999999754

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.85  E-value=2e-21  Score=173.52  Aligned_cols=142  Identities=18%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhHH----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR----  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~----  139 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++..    
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~  103 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP  103 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence            34555666666889999999999999999999999999998 9999988877654332   245679999998521    


Q ss_pred             ------HHHhcC--CCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          140 ------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       140 ------~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                            ++....  ............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus       104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~  183 (265)
T TIGR02769       104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM  183 (265)
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence                  111000  00000011122344566666553 344556666 999999999999999 99999999 8999987


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       184 ~~  185 (265)
T TIGR02769       184 VL  185 (265)
T ss_pred             HH
Confidence            53

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.85  E-value=1.1e-21  Score=182.34  Aligned_cols=136  Identities=19%  Similarity=0.084  Sum_probs=99.8

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhH--------H
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R  139 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~--------~  139 (275)
                      +.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....    ....++.++|++|++.        +
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            555566789999999999999999999999999998 99999887765321    1234567999999852        2


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.++.. .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        95 nl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~  166 (354)
T TIGR02142        95 NLRYGMK-RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR  166 (354)
T ss_pred             HHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence            2222111 111111122345566767666566777777 999999999999999 99999999 999998754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.85  E-value=4.7e-21  Score=166.96  Aligned_cols=154  Identities=14%  Similarity=0.086  Sum_probs=102.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|++.- ...++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus        15 ~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   93 (226)
T cd03248          15 QNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV   93 (226)
T ss_pred             EEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence            44555565410 123555555566789999999999999999999999999998 9999988776544444556779999


Q ss_pred             CchhHHHHH-----hc-CCCccchHH---HH--HHHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEERIRAVE-----TG-GCPHAAIRE---DI--SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~~~~~~-----~~-~~~~~~~~~---~~--~~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      +|++..+..     +. +........   ..  ....+.++.+  +.....+..+.+ |+||+||++|||+|+ +|+++|
T Consensus        94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll  173 (226)
T cd03248          94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI  173 (226)
T ss_pred             ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            998632211     10 111111111   00  0112344444  233334555556 999999999999999 899999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       174 lDEPt~~LD~~~  185 (226)
T cd03248         174 LDEATSALDAES  185 (226)
T ss_pred             EeCCcccCCHHH
Confidence            99 888888643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.8e-22  Score=191.03  Aligned_cols=145  Identities=14%  Similarity=0.018  Sum_probs=105.9

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~----  138 (275)
                      |++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++|++|++.    
T Consensus        15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~   94 (510)
T PRK09700         15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE   94 (510)
T ss_pred             cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence            33445566666667889999999999999999999999999998 999998888765444333 346999999852    


Q ss_pred             ----HHHHhcCCCc-----c---chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ----RAVETGGCPH-----A---AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ----~~~~~~~~~~-----~---~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                          +++.++....     .   ...+....+.+.++.+......++.+.+ |+||+||++||++|+ +|+|+|+| |++
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~  174 (510)
T PRK09700         95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS  174 (510)
T ss_pred             CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence                2222221110     0   0111223445567777766666777777 999999999999999 99999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       175 ~LD~~~  180 (510)
T PRK09700        175 SLTNKE  180 (510)
T ss_pred             CCCHHH
Confidence            998654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.85  E-value=4.5e-21  Score=168.36  Aligned_cols=138  Identities=17%  Similarity=0.087  Sum_probs=94.5

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-------  141 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~-------  141 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+.       
T Consensus        18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l   97 (238)
T cd03249          18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI   97 (238)
T ss_pred             ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence            455555666789999999999999999999999999998 999998877654444555667999999863211       


Q ss_pred             HhcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+. ...... ......      .+.+..+  ......+..+.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus        98 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~  174 (238)
T cd03249          98 RYG-KPDATD-EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES  174 (238)
T ss_pred             hcc-CCCCCH-HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            111 111111 111110      1111111  111123344455 999999999999999 99999999 999999754

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.85  E-value=6.9e-22  Score=173.67  Aligned_cols=145  Identities=17%  Similarity=0.051  Sum_probs=99.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch-hH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE-RI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~-~~---  138 (275)
                      .|+.+.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+... ....+++.++|++|+ +.   
T Consensus        30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~  108 (236)
T cd03267          30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWW  108 (236)
T ss_pred             ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCC
Confidence            344555666666667889999999999999999999999999998 999988765432 223455679998743 21   


Q ss_pred             -----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           +++.+..... ....+....+...++.+......+..+.+ |+||+||+.||++|+ +|+++|+| |++++|...
T Consensus       109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  188 (236)
T cd03267         109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA  188 (236)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence                 1111110000 01111112233455555554445666666 999999999999999 89999999 899998654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.85  E-value=8.4e-22  Score=191.23  Aligned_cols=142  Identities=15%  Similarity=0.048  Sum_probs=104.6

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~----  138 (275)
                      |+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......++ +.+||++|++.    
T Consensus        21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~  100 (510)
T PRK15439         21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN  100 (510)
T ss_pred             eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence            33445566666667889999999999999999999999999998 9999988877654444433 35899999852    


Q ss_pred             ----HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.+....   .......+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       101 ~tv~e~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~  175 (510)
T PRK15439        101 LSVKENILFGLPK---RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE  175 (510)
T ss_pred             CcHHHHhhccccc---chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence                112121110   111123345567777666566777777 999999999999999 99999999 999998653

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9.3e-22  Score=174.31  Aligned_cols=143  Identities=15%  Similarity=0.048  Sum_probs=97.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCC--CCChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~  138 (275)
                      .+.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.  ......+++.++|++|++.
T Consensus        16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (253)
T PRK14267         16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN   95 (253)
T ss_pred             CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence            34555566666788999999999999999999999999886     4 99999888765  2233455678999999852


Q ss_pred             --------HHHHhcCCC-cc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          139 --------RAVETGGCP-HA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       139 --------~~~~~~~~~-~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                              +++.++... ..  ........+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  175 (253)
T PRK14267         96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE  175 (253)
T ss_pred             cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                    111111100 00  0111112223344444321    123445555 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       176 P~~~LD~~~  184 (253)
T PRK14267        176 PTANIDPVG  184 (253)
T ss_pred             CCccCCHHH
Confidence            899998754

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.9e-21  Score=170.61  Aligned_cols=142  Identities=13%  Similarity=0.091  Sum_probs=99.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++   |+ |+|.+.+.++.......+++.++|+||++.     
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t   94 (246)
T PRK14269         15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS   94 (246)
T ss_pred             EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence            445666666678899999999999999999999999974   56 999999888765544456678999999863     


Q ss_pred             --HHHHhcCCCcc---chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 --RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 --~~~~~~~~~~~---~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                        +++.+......   ........+.+.++.+...    ...+..+.+ |+||+||+++||+|+ +|+++|+| |++++|
T Consensus        95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD  174 (246)
T PRK14269         95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD  174 (246)
T ss_pred             HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence              12211110000   0011112233455555442    123444555 999999999999999 99999999 899998


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       175 ~~~  177 (246)
T PRK14269        175 PIS  177 (246)
T ss_pred             HHH
Confidence            754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=2.2e-21  Score=187.39  Aligned_cols=143  Identities=13%  Similarity=-0.036  Sum_probs=103.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH---
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE---  142 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~---  142 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.....   
T Consensus        15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   94 (490)
T PRK10938         15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG   94 (490)
T ss_pred             CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence            345566666667889999999999999999999999999998 9998877666544444556679999997521110   


Q ss_pred             -----hcCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 -----TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 -----~~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           ......... ......+.+.++.+......++.+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  170 (490)
T PRK10938         95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS  170 (490)
T ss_pred             hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence                 000011100 11122344567777665556777777 999999999999999 99999999 999998654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.85  E-value=7.2e-22  Score=170.21  Aligned_cols=136  Identities=18%  Similarity=0.088  Sum_probs=96.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  . .+++.++|++|+..        
T Consensus        15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~~~~~~~~~tv~   91 (207)
T PRK13539         15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGHRNAMKPALTVA   91 (207)
T ss_pred             eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecCCCcCCCCCcHH
Confidence            44555666666889999999999999999999999999998 999988866431  1 25667899987542        


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+.......   ....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        92 ~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  162 (207)
T PRK13539         92 ENLEFWAAFLGG---EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA  162 (207)
T ss_pred             HHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            111110000000   011234456666554444555566 999999999999999 89999999 898988654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=1.7e-21  Score=159.79  Aligned_cols=144  Identities=17%  Similarity=0.120  Sum_probs=108.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH---
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE---  142 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~---  142 (275)
                      +.+.+.+.++...+|++++|+||+|||||||+|+++.+..|+ |.+.+-|.++.+..+..+++.++|+.|.+..+-.   
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe   94 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE   94 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence            445555555666889999999999999999999999999999 9999999999998999999999999998732110   


Q ss_pred             hcC-CCc--cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          143 TGG-CPH--AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       143 ~~~-~~~--~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      -+. .|.  -..+.+.....+.|.++.+.. .++..+.+ |||++||++++|.|. -|.|++|| +|+.+|...+
T Consensus        95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk  169 (223)
T COG4619          95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK  169 (223)
T ss_pred             hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence            000 010  001113344455677776544 34555556 999999999999998 89999999 7778887554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.2e-21  Score=168.85  Aligned_cols=136  Identities=21%  Similarity=0.128  Sum_probs=99.6

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~  143 (275)
                      +.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  ..+.++|++|++.        +++.+
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~   94 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL   94 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence            555666789999999999999999999999999998 999998887654322  2457999999852        22222


Q ss_pred             cCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       144 ~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      ........ ......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~  165 (232)
T PRK10771         95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR  165 (232)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            21111111 11223345566666665556777777 999999999999999 99999999 9999997643

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.85  E-value=8.9e-22  Score=174.97  Aligned_cols=142  Identities=13%  Similarity=0.035  Sum_probs=100.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC-------------ChHHHHHhcccc
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-------------EDGEFLMRNGAL  133 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~-------------~~~~~~~~ig~v  133 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...             ....+++.++|+
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   97 (257)
T PRK10619         18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV   97 (257)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence            44566666667889999999999999999999999999998 9999988765321             112445679999


Q ss_pred             CchhH--------HHHHhcCCC--ccchHHHHHHHHHHHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          134 PEERI--------RAVETGGCP--HAAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      +|++.        +++.++...  ..........+.+.++.+...... +..+.+ |+||+||++|||+|+ +|+++|+|
T Consensus        98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (257)
T PRK10619         98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD  177 (257)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            99862        111111100  001111122344566666554432 555666 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       178 EPt~~LD~~~  187 (257)
T PRK10619        178 EPTSALDPEL  187 (257)
T ss_pred             CCcccCCHHH
Confidence             999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.85  E-value=2.8e-21  Score=169.96  Aligned_cols=142  Identities=13%  Similarity=0.025  Sum_probs=97.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHH-HhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~-----  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|++  +|+ |+|.+.+.++......... ..++|++|++.     
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (243)
T TIGR01978        13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV   92 (243)
T ss_pred             EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence            44555666666889999999999999999999999995  677 9999998877654443333 34899999852     


Q ss_pred             ---HHHHhcC---CCc-----cchHHHHHHHHHHHHHhhccc-ccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ---RAVETGG---CPH-----AAIREDISINLGPLEELSNLF-KADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ---~~~~~~~---~~~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                         +++....   ...     ....+....+.+.++.+.... ..+..+. + |+||+||++|||+|+ +|+++|+| |+
T Consensus        93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt  172 (243)
T TIGR01978        93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID  172 (243)
T ss_pred             CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence               1111110   000     001111123344566665542 3445554 3 999999999999999 89999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       173 ~~LD~~~  179 (243)
T TIGR01978       173 SGLDIDA  179 (243)
T ss_pred             ccCCHHH
Confidence            9998754

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.85  E-value=8.8e-22  Score=170.78  Aligned_cols=136  Identities=21%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~  140 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..       +
T Consensus        18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~   97 (220)
T cd03245          18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN   97 (220)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHH
Confidence            3555566666789999999999999999999999999998 9999988776544444556679999998631       1


Q ss_pred             HHhcCCCccchHHHHHHHHHHHHHhhccccccc-----------cccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          141 VETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~-----------~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                      +.+. ..... ...   ..+.++.+......+.           .+.+ |+||+||+.|||+++ +|+++|+| |++++|
T Consensus        98 l~~~-~~~~~-~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD  172 (220)
T cd03245          98 ITLG-APLAD-DER---ILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMD  172 (220)
T ss_pred             hhcC-CCCCC-HHH---HHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            1111 11111 111   1122332222211111           2234 999999999999999 89999999 899988


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       173 ~~~  175 (220)
T cd03245         173 MNS  175 (220)
T ss_pred             HHH
Confidence            654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.6e-21  Score=186.64  Aligned_cols=144  Identities=11%  Similarity=0.002  Sum_probs=104.9

Q ss_pred             CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHH-HHHhccccCchhH---
Q 023913           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~---  138 (275)
                      ++..++.+.++...+|++++|+||||||||||+++|+|+++|  + |+|.+.+.++....... .++.+||++|++.   
T Consensus        16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~   95 (506)
T PRK13549         16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK   95 (506)
T ss_pred             CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence            344555566666788999999999999999999999999986  6 99999888876544333 3456999999852   


Q ss_pred             -----HHHHhcCCCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 -----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 -----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                           +++.++....    .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD  175 (506)
T PRK13549         96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT  175 (506)
T ss_pred             CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence                 2222221111    11111223345567777665556777777 999999999999999 99999999 899998


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       176 ~~~  178 (506)
T PRK13549        176 ESE  178 (506)
T ss_pred             HHH
Confidence            654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=172.43  Aligned_cols=143  Identities=14%  Similarity=0.070  Sum_probs=97.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++..  .....+++.++|++|++.
T Consensus        25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  104 (269)
T PRK14259         25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN  104 (269)
T ss_pred             CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence            3445556666668899999999999999999999999987     56 999998877642  234456677999999852


Q ss_pred             -------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          139 -------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                             +++.+..............+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus       105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g  184 (269)
T PRK14259        105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA  184 (269)
T ss_pred             cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence                   112111110000011111223344444321    224555555 999999999999999 99999999 8999


Q ss_pred             CCccc
Q 023913          205 DKIPR  209 (275)
Q Consensus       205 ~d~~~  209 (275)
                      +|...
T Consensus       185 LD~~~  189 (269)
T PRK14259        185 LDPIS  189 (269)
T ss_pred             CCHHH
Confidence            98754

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=175.26  Aligned_cols=149  Identities=17%  Similarity=0.127  Sum_probs=102.8

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++   ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..   ....+.++|+
T Consensus        10 ~~l~~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v   83 (272)
T PRK15056         10 NDVTVTWRN---GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYV   83 (272)
T ss_pred             EeEEEEecC---CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEe
Confidence            344455543   345555666667789999999999999999999999999998 999998876531   1112359999


Q ss_pred             CchhHH----------HHHhcCCCc-c----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERIR----------AVETGGCPH-A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~~----------~~~~~~~~~-~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      +|++..          ++.++.... .    ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|++
T Consensus        84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l  163 (272)
T PRK15056         84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV  163 (272)
T ss_pred             ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            998521          000110000 0    0011122334456666655555667777 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       164 lllDEPt~~LD~~~  177 (272)
T PRK15056        164 ILLDEPFTGVDVKT  177 (272)
T ss_pred             EEEeCCCccCCHHH
Confidence            9999 999998654

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.4e-21  Score=170.90  Aligned_cols=142  Identities=15%  Similarity=0.068  Sum_probs=97.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   99 (254)
T PRK14273         20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP   99 (254)
T ss_pred             ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence            4455565566678999999999999999999999999986     4 9999988776421  22345677999999852 


Q ss_pred             ------HHHHhcCCCcc--chHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPHA--AIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.++.....  ........+.+.++.+..    ....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus       100 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~  179 (254)
T PRK14273        100 FLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTS  179 (254)
T ss_pred             ccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                  12222110000  001111223334444432    1234555666 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       180 ~LD~~~  185 (254)
T PRK14273        180 ALDPIS  185 (254)
T ss_pred             ccCHHH
Confidence            998754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.85  E-value=1.1e-21  Score=174.89  Aligned_cols=143  Identities=15%  Similarity=0.147  Sum_probs=101.5

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCC-----ChHHHHHhccccCchh
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDGEFLMRNGALPEER  137 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~-----~~~~~~~~ig~v~q~~  137 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+    |+|.+.+.++...     ....+++.++|+||++
T Consensus        16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (262)
T PRK09984         16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF   95 (262)
T ss_pred             CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence            345566666666889999999999999999999999999863    8999988776432     1234456799999985


Q ss_pred             H--------HHHHhcCCCcc--------ch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          138 I--------RAVETGGCPHA--------AI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       138 ~--------~~~~~~~~~~~--------~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      .        +++.++.....        .. ......+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|
T Consensus        96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  175 (262)
T PRK09984         96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL  175 (262)
T ss_pred             ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            2        12222110000        00 11123345566666665555666667 999999999999999 999999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++++|...
T Consensus       176 lDEPt~~LD~~~  187 (262)
T PRK09984        176 ADEPIASLDPES  187 (262)
T ss_pred             ecCccccCCHHH
Confidence            99 999998754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=171.31  Aligned_cols=143  Identities=16%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCC--hHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++....  ...+++.++|++|++.
T Consensus        24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  103 (258)
T PRK14268         24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN  103 (258)
T ss_pred             CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence            44556666666788999999999999999999999999874     6 99999887764321  2345667999999852


Q ss_pred             -------HHHHhcCCCc-cchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 -------RAVETGGCPH-AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 -------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                             +++.+..... .........+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  183 (258)
T PRK14268        104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS  183 (258)
T ss_pred             cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                   1111110000 01111112233455554331    223455556 999999999999999 89999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       184 ~LD~~~  189 (258)
T PRK14268        184 ALDPIS  189 (258)
T ss_pred             ccCHHH
Confidence            998754

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=6.9e-22  Score=183.47  Aligned_cols=137  Identities=17%  Similarity=0.055  Sum_probs=98.4

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHHHHHhcCCC
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      +.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....    ....++.++|++|++..+..+....
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            555566789999999999999999999999999998 99999887764321    2234567999999853111110000


Q ss_pred             ccch---HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          148 HAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~---~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +..+   ......+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~  163 (352)
T PRK11144         96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR  163 (352)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence            0000   01112344566777665556777777 999999999999999 99999999 899998653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.85  E-value=6.4e-21  Score=168.76  Aligned_cols=140  Identities=13%  Similarity=0.056  Sum_probs=100.9

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~  141 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|++|++.        +++
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl   90 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL   90 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence            455555666789999999999999999999999998656999999888765555556667999999752        222


Q ss_pred             HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc--------CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~--------~~~vlllD-~t~g~d~~~  209 (275)
                      .+..............+.+.++.+......+..+.+ |+||+||++||++|+        +|+++|+| |++++|...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~  168 (248)
T PRK03695         91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ  168 (248)
T ss_pred             HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence            222111111111123345566666555555666666 999999999999998        45999999 999998754

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.85  E-value=6.9e-22  Score=166.43  Aligned_cols=118  Identities=22%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC--hHHHHHhccccCchhHHHHHhc
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETG  144 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~~~~~  144 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ...+++.++|++|++..+    
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~----   88 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF----   88 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccC----
Confidence            44555666666889999999999999999999999999998 99999988776543  345667899999874211    


Q ss_pred             CCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +..+..+.+.          ..    .    |+||+||+.+||+|+ +|+++|+| |++++|...
T Consensus        89 --~~~t~~~~l~----------~~----l----S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~  135 (178)
T cd03229          89 --PHLTVLENIA----------LG----L----SGGQQQRVALARALAMDPDVLLLDEPTSALDPIT  135 (178)
T ss_pred             --CCCCHHHhee----------ec----C----CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence              1112111110          00    2    999999999999999 89999999 888888643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=3.4e-21  Score=170.73  Aligned_cols=142  Identities=17%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHH----HHhccccCchh
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF----LMRNGALPEER  137 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~----~~~ig~v~q~~  137 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+     +......+.    .+.++|++|++
T Consensus        16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence            44555666666789999999999999999999999999998 999998765     443333322    24689999985


Q ss_pred             HH----------HHHhc--CCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          138 IR----------AVETG--GCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       138 ~~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ..          ++...  .............+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            21          11100  000000011112334456666554 245556666 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       176 ~~~LD~~~  183 (253)
T TIGR02323       176 TGGLDVSV  183 (253)
T ss_pred             CccCCHHH
Confidence            99998754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.85  E-value=1e-21  Score=157.67  Aligned_cols=124  Identities=23%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI  151 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~  151 (275)
                      +.++...+|++++|+|+||||||||+++|+|.++|+ |.|.+.+.++.......+++.++|++|+...+..+      ++
T Consensus         3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------tv   76 (137)
T PF00005_consen    3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGL------TV   76 (137)
T ss_dssp             EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS------BH
T ss_pred             ceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccc------cc
Confidence            344556789999999999999999999999999998 99999988887655567778899999984322111      11


Q ss_pred             H--HHHHHHHHHHHHhhccccccccc----cc-ChhHHHHHHHHHHhc-CceEEEEeCC
Q 023913          152 R--EDISINLGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELA-DYIIYIIDVS  202 (275)
Q Consensus       152 ~--~~~~~~~~~L~~l~~~~~~d~~~----~e-S~G~~q~~~laral~-~~~vlllD~t  202 (275)
                      .  .......+.++.+......+..+    .+ |+||+||++||++|+ +|.++|+|.+
T Consensus        77 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP  135 (137)
T PF00005_consen   77 RENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP  135 (137)
T ss_dssp             HHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred             ccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1  11123344555554444344444    55 999999999999999 8999999943

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=170.59  Aligned_cols=142  Identities=15%  Similarity=0.048  Sum_probs=96.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|++.     |+ |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   98 (253)
T PRK14242         19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP   98 (253)
T ss_pred             eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence            445556666668899999999999999999999999864     46 9999988776532  23345678999999852 


Q ss_pred             ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.++.... . ........+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus        99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~  178 (253)
T PRK14242         99 FPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS  178 (253)
T ss_pred             CcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                  1221110000 0 00111122233444443321    23444555 999999999999999 89999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       179 ~LD~~~  184 (253)
T PRK14242        179 ALDPIA  184 (253)
T ss_pred             cCCHHH
Confidence            998754

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.85  E-value=5e-21  Score=187.27  Aligned_cols=150  Identities=13%  Similarity=0.010  Sum_probs=109.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.||+   +..++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|+
T Consensus       326 ~~v~f~y~~---~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  402 (547)
T PRK10522        326 RNVTFAYQD---NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV  402 (547)
T ss_pred             EEEEEEeCC---CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEE
Confidence            677788876   444555666667889999999999999999999999999998 9999999998877777888999999


Q ss_pred             CchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccc---ccc--cc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD---LLL--CE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       134 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d---~~~--~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                      +|++..+..+-.......  ......+.++.+.......   ..+  .. |+||+||+++||+++ +|+++|+| ||+++
T Consensus       403 ~q~~~lf~~ti~~n~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L  480 (547)
T PRK10522        403 FTDFHLFDQLLGPEGKPA--NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ  480 (547)
T ss_pred             ecChhHHHHhhccccCch--HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            999854433222111111  1112233444443222111   111  12 999999999999999 99999999 89899


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus       481 D~~~  484 (547)
T PRK10522        481 DPHF  484 (547)
T ss_pred             CHHH
Confidence            8754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.85  E-value=3.9e-21  Score=165.13  Aligned_cols=140  Identities=15%  Similarity=0.078  Sum_probs=100.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRN  130 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~i  130 (275)
                      .++.|.||..-+++.++.+.++...+|++++|+|+||||||||+++|+|+++   |+ |+|.+.+.++.... ...++.+
T Consensus         7 ~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i   85 (202)
T cd03233           7 RNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEI   85 (202)
T ss_pred             EccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceE
Confidence            4667778752123445556666678899999999999999999999999998   77 99999887765432 3455679


Q ss_pred             cccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       131 g~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      +|++|++.      ..+..+..+.+....    ..    ..+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus        86 ~~~~q~~~------~~~~~tv~~~l~~~~----~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~  151 (202)
T cd03233          86 IYVSEEDV------HFPTLTVRETLDFAL----RC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS  151 (202)
T ss_pred             EEEecccc------cCCCCcHHHHHhhhh----hh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence            99998742      122233333332110    00    03444445 999999999999999 89999999 8989886


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       152 ~~  153 (202)
T cd03233         152 ST  153 (202)
T ss_pred             HH
Confidence            54

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.85  E-value=2e-21  Score=168.62  Aligned_cols=147  Identities=17%  Similarity=0.096  Sum_probs=99.4

Q ss_pred             cccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           56 HEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        56 ~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      +..+.|++   .. .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus         7 ~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   83 (221)
T cd03244           7 NVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII   83 (221)
T ss_pred             EEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence            34455554   32 4555566666789999999999999999999999999998 9999988877655555667789999


Q ss_pred             CchhHHHHH-----hcCCCccchHHHHHHHHHHHHHhhccc-----------cccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERIRAVE-----TGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~l~~~~-----------~~d~~~~e-S~G~~q~~~laral~-~~~  195 (275)
                      +|++..+..     +....... ....   .+.++.+....           ..+..+.+ |+||+||++|||+|+ +|+
T Consensus        84 ~q~~~l~~~tv~enl~~~~~~~-~~~~---~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          84 PQDPVLFSGTIRSNLDPFGEYS-DEEL---WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             CCCCccccchHHHHhCcCCCCC-HHHH---HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            998631110     11000111 1111   11222221111           11223344 999999999999999 899


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       160 llllDEP~~~LD~~~  174 (221)
T cd03244         160 ILVLDEATASVDPET  174 (221)
T ss_pred             EEEEeCccccCCHHH
Confidence            99999 899998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=4.9e-21  Score=165.60  Aligned_cols=136  Identities=18%  Similarity=0.116  Sum_probs=98.3

Q ss_pred             cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHH
Q 023913           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE  142 (275)
Q Consensus        72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~  142 (275)
                      .+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  .+++.++|++|++.        +++.
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~   92 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG   92 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHH
Confidence            3555566789999999999999999999999999998 99999887765422  34567999999852        2221


Q ss_pred             hcCCCccc-hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 TGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 ~~~~~~~~-~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +....... .......+.+.++.+......+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~  163 (213)
T TIGR01277        93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL  163 (213)
T ss_pred             hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            11111110 011122334466666555555666666 999999999999999 89999999 899998754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=6.2e-21  Score=171.18  Aligned_cols=143  Identities=20%  Similarity=0.163  Sum_probs=102.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---------CCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---------~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|         .|+|.+.+.++.......+++.++|++|++
T Consensus        13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~   92 (272)
T PRK13547         13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA   92 (272)
T ss_pred             CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence            34455566666688999999999999999999999999987         489999888776555555666789999875


Q ss_pred             H--------HHHHhcCCCcc---c--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc----------C
Q 023913          138 I--------RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----------D  193 (275)
Q Consensus       138 ~--------~~~~~~~~~~~---~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~----------~  193 (275)
                      .        +++.+......   .  ..+....+.+.++.+......+..+.+ |+||+||++|||+|+          +
T Consensus        93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~  172 (272)
T PRK13547         93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP  172 (272)
T ss_pred             CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence            2        22222211110   0  011222344566666555555666666 999999999999998          7


Q ss_pred             ceEEEEe-CCCCCCccc
Q 023913          194 YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~~  209 (275)
                      |+++|+| |++++|...
T Consensus       173 p~lllLDEPt~~LD~~~  189 (272)
T PRK13547        173 PRYLLLDEPTAALDLAH  189 (272)
T ss_pred             CCEEEEcCccccCCHHH
Confidence            9999999 899998654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.6e-21  Score=170.71  Aligned_cols=151  Identities=13%  Similarity=0.040  Sum_probs=101.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~  126 (275)
                      .+..+.|++    ..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++..  .....+
T Consensus        17 ~~l~~~~~~----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~   92 (260)
T PRK10744         17 RNLNFYYGK----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL   92 (260)
T ss_pred             EEEEEEeCC----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence            344455543    445556666667899999999999999999999999986     46 999998877643  223455


Q ss_pred             HHhccccCchhH-------HHHHhcCCC--ccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913          127 LMRNGALPEERI-------RAVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~  192 (275)
                      ++.++|++|++.       +++.+....  ..........+.+.++.+...    ...+..+.+ |+||+||++|||+|+
T Consensus        93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  172 (260)
T PRK10744         93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA  172 (260)
T ss_pred             hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            678999999852       111111000  011111112333455554431    223445555 999999999999999


Q ss_pred             -CceEEEEe-CCCCCCccc
Q 023913          193 -DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 -~~~vlllD-~t~g~d~~~  209 (275)
                       +|+++|+| |++++|...
T Consensus       173 ~~p~lllLDEPt~~LD~~~  191 (260)
T PRK10744        173 IRPEVLLLDEPCSALDPIS  191 (260)
T ss_pred             CCCCEEEEcCCCccCCHHH
Confidence             99999999 899998754

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.85  E-value=1.9e-21  Score=168.34  Aligned_cols=138  Identities=13%  Similarity=0.014  Sum_probs=97.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..   ....+.++|++|++.       
T Consensus        23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~---~~~~~~i~~~~q~~~~~~~~t~   99 (214)
T PRK13543         23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRSRFMAYLGHLPGLKADLST   99 (214)
T ss_pred             CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc---hhhhhceEEeecCcccccCCcH
Confidence            445566666667889999999999999999999999999998 999998876643   233456899998742       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.+...... . .......+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus       100 ~e~l~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  172 (214)
T PRK13543        100 LENLHFLCGLHG-R-RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG  172 (214)
T ss_pred             HHHHHHHHHhcC-C-cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence             11111100000 0 0111223455555555455666666 999999999999999 99999999 888888644

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.84  E-value=5.9e-21  Score=203.57  Aligned_cols=152  Identities=16%  Similarity=0.101  Sum_probs=116.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---------------------------
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---------------------------  107 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---------------------------  107 (275)
                      .++.|.||++ ++.+++.+.++..++|++++|+|++|||||||+++|+|+++|                           
T Consensus      1169 ~nVsF~Y~~~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265       1169 MDVNFRYISR-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred             EEEEEECCCC-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence            7889999861 122455555556678999999999999999999999999998                           


Q ss_pred             ---------------------------C-CcEEEEeccCCCCChHHHHHhccccCchhH-------HHHHhcCCCccchH
Q 023913          108 ---------------------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAVETGGCPHAAIR  152 (275)
Q Consensus       108 ---------------------------~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~~~~~~~~~~~~~  152 (275)
                                                 + |+|.+++.++.+.+...+++.++||+|++.       +|+.++ .+..+..
T Consensus      1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g-~~~at~e 1326 (1466)
T PTZ00265       1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATRE 1326 (1466)
T ss_pred             cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC-CCCCCHH
Confidence                                       5 999999999998888999999999999983       344343 3433332


Q ss_pred             HHHHHHH--HHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          153 EDISINL--GPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       153 ~~~~~~~--~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      + +..+.  ..+.+|.  +..+++..+.|     ||||+||++|||||+ +|+|+||| ||+.+|...
T Consensus      1327 e-I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265       1327 D-VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred             H-HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence            2 21111  1233332  34577888887     999999999999999 99999999 888888643

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.84  E-value=1.8e-21  Score=170.42  Aligned_cols=141  Identities=14%  Similarity=0.019  Sum_probs=99.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      ...+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  ..+.++|++|++..+...+..
T Consensus        13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~   90 (232)
T cd03300          13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVF   90 (232)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHH
Confidence            34444555556789999999999999999999999999998 999998877654332  246799999986321110100


Q ss_pred             Ccc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          147 PHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       147 ~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      .+.         ........+...++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|....
T Consensus        91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~  166 (232)
T cd03300          91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR  166 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            000         0111112334456666555555666666 999999999999999 99999999 9999987653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.2e-21  Score=171.12  Aligned_cols=143  Identities=16%  Similarity=0.091  Sum_probs=98.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|++|++.
T Consensus        31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  110 (267)
T PRK14235         31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN  110 (267)
T ss_pred             CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence            34455566666788999999999999999999999999874     6 9999988776532  23455677999999852


Q ss_pred             -------HHHHhcCCCc-c--chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          139 -------RAVETGGCPH-A--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       139 -------~~~~~~~~~~-~--~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                             +++.++.... .  ........+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus       111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP  190 (267)
T PRK14235        111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP  190 (267)
T ss_pred             CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                   1222111000 0  01111122334555554421    23445556 999999999999999 99999999 9


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       191 t~~LD~~~  198 (267)
T PRK14235        191 CSALDPIA  198 (267)
T ss_pred             CcCCCHHH
Confidence            99998754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.4e-21  Score=178.42  Aligned_cols=142  Identities=13%  Similarity=0.037  Sum_probs=101.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC----CC-CcEEEEeccCCCCChHHHH----HhccccCchhH
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~----~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++    ++ |+|.+.+.++......++.    +.++|+||++.
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            345666666778899999999999999999999999986    46 9999999887665544332    36999999863


Q ss_pred             H----------HHHhc--CC-Ccc----chHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          139 R----------AVETG--GC-PHA----AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       139 ~----------~~~~~--~~-~~~----~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      .          ++...  +. ...    ...+....+.+.|+.+++..   ..+..+.+ |+||+||++|||+|+ +|+|
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l  179 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL  179 (330)
T ss_pred             hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence            1          11100  00 000    00111234455677776643   23556666 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       180 lilDEPts~LD~~~  193 (330)
T PRK15093        180 LIADEPTNAMEPTT  193 (330)
T ss_pred             EEEeCCCCcCCHHH
Confidence            9999 899998643

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=4.1e-21  Score=158.00  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=105.4

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---H-HHhccccCchhHHHHHhc
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERIRAVETG  144 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~~~~~~~  144 (275)
                      ++..+.+...+||.++|+||+||||||||-.++|+-.|+ |.|.+.+.+....+...   + .+++|||||.+.....++
T Consensus        25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~lt  104 (228)
T COG4181          25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLT  104 (228)
T ss_pred             EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccch
Confidence            344555667789999999999999999999999999999 99999999988775432   2 246999999873222222


Q ss_pred             CCCcc---------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          145 GCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       145 ~~~~~---------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      ..++.         .....+..+.+.|+.+++......++.+ |+|++||++|||||+ .|.|++.| ||..+|..
T Consensus       105 AlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~  180 (228)
T COG4181         105 ALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA  180 (228)
T ss_pred             hhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence            11111         1122334556688888888888777777 999999999999999 89999999 66666653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=5.5e-21  Score=169.96  Aligned_cols=142  Identities=13%  Similarity=0.029  Sum_probs=96.6

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++..  .....+++.++|++|++. 
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (258)
T PRK14241         17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP   96 (258)
T ss_pred             EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence            4455566666688999999999999999999999999863     5 999998877642  223455677999999752 


Q ss_pred             -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.+......  ........+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  176 (258)
T PRK14241         97 FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPC  176 (258)
T ss_pred             CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                   11111100000  1111112223344444331    233455555 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       177 ~~LD~~~  183 (258)
T PRK14241        177 SALDPIS  183 (258)
T ss_pred             ccCCHHH
Confidence            9998754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.84  E-value=9.3e-21  Score=165.89  Aligned_cols=133  Identities=14%  Similarity=0.073  Sum_probs=94.7

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHh
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~  143 (275)
                      +.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....     ..+|++|++.        +++.+
T Consensus         3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~~   77 (230)
T TIGR01184         3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIAL   77 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHHH
Confidence            344455779999999999999999999999999998 999998877654322     2378888742        22222


Q ss_pred             cC---CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          144 GG---CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       144 ~~---~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      ..   .......+....+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |++++|...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~  150 (230)
T TIGR01184        78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR  150 (230)
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence            10   01111111122334566666655555666677 999999999999999 99999999 9999997543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.84  E-value=1.1e-20  Score=189.55  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=111.9

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+++|.|++   +.+ ++.+.++..++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus       459 ~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~  535 (694)
T TIGR01846       459 ENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV  535 (694)
T ss_pred             EEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence            778888876   444 455555566789999999999999999999999999998 999999999988888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ++|++.       +++.+ +.+..+..+.... ....+.++.  ...+++..+.|     |+||+||+++||+++ +|++
T Consensus       536 v~q~~~lf~~ti~eNi~~-~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i  614 (694)
T TIGR01846       536 VLQENVLFSRSIRDNIAL-CNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI  614 (694)
T ss_pred             EccCCeehhhhHHHHHhc-CCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            999973       23322 2333332221111 111222221  12356666655     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       615 lilDEpts~LD~~~  628 (694)
T TIGR01846       615 LIFDEATSALDYES  628 (694)
T ss_pred             EEEECCCcCCCHHH
Confidence            9999 888988654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.8e-21  Score=183.59  Aligned_cols=143  Identities=13%  Similarity=0.022  Sum_probs=103.5

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~------  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.      
T Consensus        10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   89 (491)
T PRK10982         10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS   89 (491)
T ss_pred             CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence            345566666667889999999999999999999999999998 9999998877544332 33457999999852      


Q ss_pred             --HHHHhcCCCcc----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~~~----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.++.....    ........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~  169 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE  169 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence              22222211110    1111123344566666655555666777 999999999999999 99999999 899998653

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.84  E-value=1.6e-21  Score=169.61  Aligned_cols=138  Identities=16%  Similarity=0.038  Sum_probs=96.6

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...   . .+.++|+||++..+...+..
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~   88 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAR   88 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHH
Confidence            44555565566789999999999999999999999999998 9999888765321   1 25789999875211100000


Q ss_pred             Cccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+..+     ......+.+.++.+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~  159 (223)
T TIGR03740        89 ENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG  159 (223)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence            00000     00012234456666555555666666 999999999999999 89999999 999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.84  E-value=1.1e-20  Score=164.54  Aligned_cols=139  Identities=17%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec----cCCCCChHH---H-HHhccccCchhHH-
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE---F-LMRNGALPEERIR-  139 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~----d~~~~~~~~---~-~~~ig~v~q~~~~-  139 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.    ++.......   + .+.++|++|++.. 
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~  102 (224)
T TIGR02324        23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVI  102 (224)
T ss_pred             EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccC
Confidence            455555556789999999999999999999999999998 99988742    333233222   2 3469999998631 


Q ss_pred             -------HHHhcCC-CccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          140 -------AVETGGC-PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       140 -------~~~~~~~-~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                             ++..... ...........+.+.++.+..... .+..+.+ |+||+||++|||+|+ +|+++|+| |++++|.
T Consensus       103 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~  182 (224)
T TIGR02324       103 PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA  182 (224)
T ss_pred             CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence                   1111100 011111112233445666655432 3555666 999999999999999 89999999 8888875


Q ss_pred             c
Q 023913          208 P  208 (275)
Q Consensus       208 ~  208 (275)
                      .
T Consensus       183 ~  183 (224)
T TIGR02324       183 A  183 (224)
T ss_pred             H
Confidence            4

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.84  E-value=1.3e-20  Score=184.25  Aligned_cols=150  Identities=19%  Similarity=0.161  Sum_probs=108.1

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.||+   .. .++.+.++..++|+.++|+|+||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus       320 ~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~  396 (544)
T TIGR01842       320 ENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY  396 (544)
T ss_pred             EEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence            677788875   43 4455555566789999999999999999999999999998 999999998887777788889999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +++.... +..+.. .+..+.+  .++++..  ..+++..+.|     |+||+||+++||+++ +|+
T Consensus       397 v~q~~~lf~~ti~~Ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       397 LPQDVELFPGTVAENIARFG-ENADPE-KIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             ecCCcccccccHHHHHhccC-CCCCHH-HHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            999973       2222222 222221 1111111  1222211  2244554544     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       475 ililDEpts~LD~~~  489 (544)
T TIGR01842       475 LVVLDEPNSNLDEEG  489 (544)
T ss_pred             EEEEeCCccccCHHH
Confidence            99999 888998654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.84  E-value=6.4e-21  Score=159.82  Aligned_cols=115  Identities=26%  Similarity=0.322  Sum_probs=88.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++..      .
T Consensus        13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~------~   85 (173)
T cd03230          13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSL------Y   85 (173)
T ss_pred             eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCcc------c
Confidence            34455555666789999999999999999999999999998 99999887765433 4556679999998421      1


Q ss_pred             CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +..+..+.+.                .    |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        86 ~~~tv~~~~~----------------L----S~G~~qrv~laral~~~p~illlDEPt~~LD~~~  130 (173)
T cd03230          86 ENLTVRENLK----------------L----SGGMKQRLALAQALLHDPELLILDEPTSGLDPES  130 (173)
T ss_pred             cCCcHHHHhh----------------c----CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence            1122222210                2    999999999999999 99999999 888888654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.84  E-value=3e-21  Score=169.68  Aligned_cols=140  Identities=15%  Similarity=0.021  Sum_probs=100.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (275)
                      +..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ..++.++|+||++..+      
T Consensus        13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~~q~~~~~~~~t~~   90 (237)
T TIGR00968        13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFVFQHYALFKHLTVR   90 (237)
T ss_pred             eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEEecChhhccCCcHH
Confidence            44555666666789999999999999999999999999998 99999887765432  2346799999986321      


Q ss_pred             --HHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 --VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 --~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +...... ..........+.+.++.+......+..+.+ |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~  165 (237)
T TIGR00968        91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV  165 (237)
T ss_pred             HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence              1111000 001111123334566666555445666666 999999999999999 89999999 999998754

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.84  E-value=3.8e-21  Score=161.22  Aligned_cols=113  Identities=23%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+      +
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~------~   89 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELF------S   89 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccc------c
Confidence            3455555566789999999999999999999999999998 99999888776655556677899999975211      1


Q ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       .+..+          .+       .    |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        90 -~tv~~----------~l-------L----S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~  131 (173)
T cd03246          90 -GSIAE----------NI-------L----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG  131 (173)
T ss_pred             -CcHHH----------HC-------c----CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence             11111          11       2    999999999999999 99999999 888988654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.84  E-value=1e-20  Score=174.10  Aligned_cols=141  Identities=16%  Similarity=0.080  Sum_probs=100.7

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHH----HhccccCchhHH-
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL----MRNGALPEERIR-  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~-  139 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|    .|+|.+.+.++......+++    +.++|+||++.. 
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~  109 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTS  109 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence            456666667788999999999999999999999999987    49999999888766544432    369999999621 


Q ss_pred             ---------HHHhc--CCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          140 ---------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       140 ---------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                               ++...  ........+....+.+.|+.+....   ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus       110 l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPt  189 (330)
T PRK09473        110 LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT  189 (330)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                     11100  0001111222234455666655432   12445666 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       190 s~LD~~~  196 (330)
T PRK09473        190 TALDVTV  196 (330)
T ss_pred             ccCCHHH
Confidence            9998643

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.84  E-value=1.6e-20  Score=185.01  Aligned_cols=150  Identities=18%  Similarity=0.145  Sum_probs=108.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +.+++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+++.++...+...+++.++|+
T Consensus       338 ~~v~~~y~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  414 (585)
T TIGR01192       338 RHITFEFAN---SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV  414 (585)
T ss_pred             EEEEEECCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            677787876   445555666666889999999999999999999999999998 9999999888777777888899999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      +|++.       +++.+ +.+..+..+ ...+.+  .+.++.  ...+++..+.+     |+||+||++|||+|+ +|++
T Consensus       415 ~q~~~lf~~ti~~Ni~~-~~~~~~~~~-~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i  492 (585)
T TIGR01192       415 FQDAGLFNRSIRENIRL-GREGATDEE-VYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI  492 (585)
T ss_pred             ccCCccCcccHHHHHhc-CCCCCCHHH-HHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            99973       23323 223222211 111111  122221  12234444444     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| |++++|...
T Consensus       493 lilDEpts~LD~~~  506 (585)
T TIGR01192       493 LVLDEATSALDVET  506 (585)
T ss_pred             EEEECCccCCCHHH
Confidence            9999 888988654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1e-20  Score=183.23  Aligned_cols=143  Identities=15%  Similarity=0.039  Sum_probs=104.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.++|++|++.      
T Consensus        16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK11288         16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT   95 (501)
T ss_pred             CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence            345556666667889999999999999999999999999998 999998877654332 234567999999752      


Q ss_pred             --HHHHhcCCCc--c--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCPH--A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~~--~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.++....  .  ...+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus        96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (501)
T PRK11288         96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE  175 (501)
T ss_pred             HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence              2222221110  0  1111223445567777665555666777 999999999999999 99999999 999998653

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=99.84  E-value=1.6e-20  Score=171.71  Aligned_cols=179  Identities=18%  Similarity=0.234  Sum_probs=130.8

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      +.+++.|+|+.|||||||||.++.. ....+++++.|+++... |+++....+.     ......+||.||+.+.++...
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~-----~v~eL~~GCiCCs~~~~l~~~   76 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA   76 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc-ccCCcccccccCcCCccccHHHHhCcCc-----eEEEECCCEEEEccCchHHHH
Confidence            5689999999999999999999964 22368999999999764 5555543211     011236799999988877553


Q ss_pred             HHHH-HHhhc-ccccccccccChhHHHHHHHHHHhc-----------CceEEEEeCCCCCCccc---cccccccccCEEE
Q 023913          159 LGPL-EELSN-LFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKIPR---KGGPGITQADLLV  222 (275)
Q Consensus       159 ~~~L-~~l~~-~~~~d~~~~eS~G~~q~~~laral~-----------~~~vlllD~t~g~d~~~---~~~~~i~~adiiv  222 (275)
                      +..+ ..+.. ...+|++++|+.|...+..++..+.           +..|.++|+.++.....   ....|+..||+||
T Consensus        77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv  156 (318)
T PRK11537         77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_pred             HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence            3333 22211 1268999999999988888776651           56899999887754432   2357899999999


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +||+|+++.    .+.+++.++.+||.++|+.++. .......+++.
T Consensus       157 lnK~Dl~~~----~~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~~~  198 (318)
T PRK11537        157 LTKTDVAGE----AEKLRERLARINARAPVYTVVH-GDIDLSLLFNT  198 (318)
T ss_pred             EeccccCCH----HHHHHHHHHHhCCCCEEEEecc-CCCCHHHHhCC
Confidence            999999975    2688899999999999998763 33455566554

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.84  E-value=1.6e-20  Score=162.87  Aligned_cols=147  Identities=14%  Similarity=0.034  Sum_probs=96.3

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRN  130 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~i  130 (275)
                      +-.|.|++   +..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....    ..+++.+
T Consensus         5 ~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           5 NGYFSWGS---GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeEEecCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            44566665   445555666666789999999999999999999999999998 999988876543221    2234569


Q ss_pred             cccCchhH-------HHHHhcCCCccchHHHHHHHHHHH--HH-hhcc-----ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913          131 GALPEERI-------RAVETGGCPHAAIREDISINLGPL--EE-LSNL-----FKADLLLCE-SGGDNLAANFSRELA-D  193 (275)
Q Consensus       131 g~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L--~~-l~~~-----~~~d~~~~e-S~G~~q~~~laral~-~  193 (275)
                      +|++|++.       +++.+. +.. . ........+.+  .. +...     ...+..+.+ |+||+||++|||+++ +
T Consensus        82 ~~~~q~~~~~~~t~~~nl~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          82 AYAAQKPWLLNATVEENITFG-SPF-N-KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             EEEcCCCccccccHHHHHhhc-CcC-C-HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            99999863       111111 111 1 11111111111  11 1100     012233445 999999999999999 8


Q ss_pred             ceEEEEe-CCCCCCcc
Q 023913          194 YIIYIID-VSGGDKIP  208 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~  208 (275)
                      |.++|+| |++++|..
T Consensus       159 p~illlDEPt~~LD~~  174 (218)
T cd03290         159 TNIVFLDDPFSALDIH  174 (218)
T ss_pred             CCEEEEeCCccccCHH
Confidence            9999999 88888864

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.84  E-value=1.4e-20  Score=184.94  Aligned_cols=150  Identities=21%  Similarity=0.242  Sum_probs=109.4

Q ss_pred             ccccccCCCCCCCC-C-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc
Q 023913           55 SHEPIYSPGYFSRR-A-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (275)
                      .++.|.||+   +. + .+.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.++.+.....+++.++
T Consensus       341 ~~v~f~y~~---~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  417 (576)
T TIGR02204       341 EQVNFAYPA---RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA  417 (576)
T ss_pred             EEEEEECCC---CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence            677888876   32 3 444555556789999999999999999999999999998 99999999988888888889999


Q ss_pred             ccCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cc
Q 023913          132 ALPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (275)
Q Consensus       132 ~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~  194 (275)
                      |+||++.       +|+.+ +.+..+. +.+....+  .+.++..  ..+.+..+.|     |+||+||+++||+++ +|
T Consensus       418 ~~~Q~~~lf~~Ti~~Ni~~-~~~~~~~-~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~  495 (576)
T TIGR02204       418 LVPQDPVLFAASVMENIRY-GRPDATD-EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA  495 (576)
T ss_pred             EEccCCccccccHHHHHhc-CCCCCCH-HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence            9999973       33323 2333322 12211111  1111111  2345555554     999999999999999 89


Q ss_pred             eEEEEe-CCCCCCccc
Q 023913          195 IIYIID-VSGGDKIPR  209 (275)
Q Consensus       195 ~vlllD-~t~g~d~~~  209 (275)
                      +++|+| ||+++|...
T Consensus       496 ~ililDEpts~lD~~~  511 (576)
T TIGR02204       496 PILLLDEATSALDAES  511 (576)
T ss_pred             CeEEEeCcccccCHHH
Confidence            999999 888888754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.84  E-value=4.5e-21  Score=161.42  Aligned_cols=123  Identities=16%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             ccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           57 EPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        57 ~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ..+.|++   .+ .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++
T Consensus         6 ~~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~   81 (178)
T cd03247           6 VSFSYPE---QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLN   81 (178)
T ss_pred             EEEEeCC---CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEc
Confidence            3455554   22 3555566666789999999999999999999999999998 9999888765433 345567799999


Q ss_pred             chhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          135 EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       135 q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      |++..+      + .+..+.          +         +.+ |+||+||+.|||+++ +|+++|+| |++++|...
T Consensus        82 q~~~~~------~-~tv~~~----------i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~  133 (178)
T cd03247          82 QRPYLF------D-TTLRNN----------L---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT  133 (178)
T ss_pred             cCCeee------c-ccHHHh----------h---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            875211      0 111111          1         233 999999999999999 99999999 888988654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.84  E-value=8e-21  Score=166.76  Aligned_cols=139  Identities=19%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--------H
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------A  140 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------~  140 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++..        +
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~   91 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN   91 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence            455555566789999999999999999999999999998 999999987765433  24679999988521        1


Q ss_pred             HHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      +.+..... ....+....+.+.++.+......+..+.+ |+||+||++|||+++ +|+++++| |++++|....
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~  165 (235)
T cd03299          92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTK  165 (235)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHH
Confidence            11110000 01111112334566666665556666667 999999999999999 99999999 9999987653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.84  E-value=1.1e-20  Score=158.07  Aligned_cols=113  Identities=21%  Similarity=0.222  Sum_probs=88.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |++.+.+.++.......+++.++|++|++..+      .
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~------~   89 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF------S   89 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc------c
Confidence            4555655666789999999999999999999999999998 99999887765544455667899999875211      0


Q ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       .+..+          .+       .    |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        90 -~t~~e----------~l-------L----S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~  131 (171)
T cd03228          90 -GTIRE----------NI-------L----SGGQRQRIAIARALLRDPPILILDEATSALDPET  131 (171)
T ss_pred             -chHHH----------Hh-------h----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence             11111          11       2    999999999999999 99999999 888988643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.5e-21  Score=168.38  Aligned_cols=152  Identities=14%  Similarity=0.077  Sum_probs=101.0

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCCC--hHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~~--~~~~  126 (275)
                      .++.+.|++    ..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++....  ...+
T Consensus         9 ~~l~~~~~~----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   84 (251)
T PRK14244          9 KNLNLWYGS----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL   84 (251)
T ss_pred             eeEEEEECC----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence            344455543    445556666668899999999999999999999999975     35 99999887654321  1245


Q ss_pred             HHhccccCchhH-------HHHHhcCCCc--c-chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHh
Q 023913          127 LMRNGALPEERI-------RAVETGGCPH--A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSREL  191 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~~--~-~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral  191 (275)
                      ++.++|+||++.       +++.+.....  . ........+.+.++.+....    ..+..+.+ |+||+||++|||+|
T Consensus        85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  164 (251)
T PRK14244         85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI  164 (251)
T ss_pred             hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence            667999999852       1111110000  0 00111122334556554432    23344555 99999999999999


Q ss_pred             c-CceEEEEe-CCCCCCcccc
Q 023913          192 A-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       192 ~-~~~vlllD-~t~g~d~~~~  210 (275)
                      + +|+++|+| |++++|...+
T Consensus       165 ~~~p~llllDEPt~~LD~~~~  185 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVAT  185 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHH
Confidence            9 89999999 9999997543

>PLN03130 ABC transporter C family member; Provisional

Probab=99.83  E-value=3.2e-20  Score=199.54  Aligned_cols=149  Identities=16%  Similarity=0.111  Sum_probs=112.3

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +.+ ++.+.++..++|+.+||+|++|||||||+++|+++++|+ |+|.+++.|+.+.+..++++++++
T Consensus      1241 ~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130       1241 EDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred             EEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEE
Confidence            788888876   444 455555566779999999999999999999999999998 999999999999888999999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +|+..+. . .+. +++..+.+  .+.++..  ..++|..+.|     |+|||||++|||||+ +|+
T Consensus      1318 VpQdp~LF~GTIreNLd~~~-~-~td-eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ 1394 (1622)
T PLN03130       1318 IPQAPVLFSGTVRFNLDPFN-E-HND-ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSK 1394 (1622)
T ss_pred             ECCCCccccccHHHHhCcCC-C-CCH-HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence            999984       2222221 1 121 12221111  2222221  3467777776     999999999999999 899


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+||| ||+.+|...
T Consensus      1395 ILILDEATSaLD~~T 1409 (1622)
T PLN03130       1395 ILVLDEATAAVDVRT 1409 (1622)
T ss_pred             EEEEECCCCCCCHHH
Confidence            99999 788888643

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=99.83  E-value=2.9e-20  Score=171.61  Aligned_cols=183  Identities=21%  Similarity=0.228  Sum_probs=135.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHHH-HhcCCCccchHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS  156 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~  156 (275)
                      +-+++.|+|+.||||||||+.++..  +. .+++++.|+++..+ |+.+.+..+.......... ..+||.||+.+.++.
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~   80 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI   80 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence            4679999999999999999999874  34 68999999999864 6666665332110001122 368999999988875


Q ss_pred             HHHHHHHHhh-cccccccccccChhHHHHHHHHHHhc----------CceEEEEeCCCCCCc------------------
Q 023913          157 INLGPLEELS-NLFKADLLLCESGGDNLAANFSRELA----------DYIIYIIDVSGGDKI------------------  207 (275)
Q Consensus       157 ~~~~~L~~l~-~~~~~d~~~~eS~G~~q~~~laral~----------~~~vlllD~t~g~d~------------------  207 (275)
                      .   .|..+. ....+|++++|++|...+..++..+.          +..|.++|+.++...                  
T Consensus        81 ~---~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~  157 (341)
T TIGR02475        81 P---TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDN  157 (341)
T ss_pred             H---HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccc
Confidence            5   444443 24579999999999998888887762          568899998755310                  


Q ss_pred             -------cccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCC-CCEEEEEecCCcCHHHHhccc
Q 023913          208 -------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG-GPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       208 -------~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~-~~ii~~S~~~~~g~~~l~~~~  270 (275)
                             ......|+++||+||+||+|+++.  ++++.+++.++++||. ++|+.++. .......|++..
T Consensus       158 ~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~~~  225 (341)
T TIGR02475       158 LDHETPLEELFEDQLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLGLG  225 (341)
T ss_pred             ccccchHHHHHHHHHHhCCEEEEeccccCCH--HHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhCCC
Confidence                   011247899999999999999988  7899999999998885 57887653 445677777653

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.5e-20  Score=167.35  Aligned_cols=143  Identities=15%  Similarity=0.096  Sum_probs=97.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~  138 (275)
                      ...++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++..  .....+++.++|++|++.
T Consensus        24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~  103 (259)
T PRK14274         24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN  103 (259)
T ss_pred             CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence            34556566666788999999999999999999999999863     4 999998877643  223355677999999852


Q ss_pred             -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.+......  ...+....+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus       104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  183 (259)
T PRK14274        104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT  183 (259)
T ss_pred             ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                   11211111110  0011112223344444332    123455556 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       184 ~~LD~~~  190 (259)
T PRK14274        184 SALDPVS  190 (259)
T ss_pred             ccCCHHH
Confidence            9998754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.83  E-value=1.6e-20  Score=184.52  Aligned_cols=150  Identities=16%  Similarity=0.146  Sum_probs=109.0

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   .. .++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++.+.+...+++.++|
T Consensus       317 ~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  393 (569)
T PRK10789        317 NIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV  393 (569)
T ss_pred             EEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence            667788875   33 4555555666889999999999999999999999999998 999999998887777788889999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ++|++.       +++.+ +.+..+.. .+..+.+  .+..+.  ...+++..+.+     |+||+||+++||+++ +|+
T Consensus       394 v~q~~~lf~~ti~~Ni~~-~~~~~~~~-~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~  471 (569)
T PRK10789        394 VSQTPFLFSDTVANNIAL-GRPDATQQ-EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE  471 (569)
T ss_pred             EccCCeeccccHHHHHhc-CCCCCCHH-HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            999973       22222 22322221 1211111  122111  22345555544     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       472 illlDEpts~LD~~~  486 (569)
T PRK10789        472 ILILDDALSAVDGRT  486 (569)
T ss_pred             EEEEECccccCCHHH
Confidence            99999 888988654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.4e-20  Score=167.97  Aligned_cols=146  Identities=14%  Similarity=0.059  Sum_probs=98.7

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCc
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPE  135 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q  135 (275)
                      +|++..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|++|
T Consensus        17 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q   96 (261)
T PRK14263         17 FYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ   96 (261)
T ss_pred             EeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEec
Confidence            34445556666666788999999999999999999999999976     5 9999998876532  22345667999999


Q ss_pred             hhHH-------HHHhcCCCccchHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       136 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ++..       ++.++.............+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |
T Consensus        97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  176 (261)
T PRK14263         97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP  176 (261)
T ss_pred             CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            8631       111111000000111122334455443321    12333444 999999999999999 99999999 9


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       177 tsgLD~~~  184 (261)
T PRK14263        177 CSALDPIA  184 (261)
T ss_pred             CccCCHHH
Confidence            99998754

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.83  E-value=1.2e-20  Score=164.95  Aligned_cols=136  Identities=13%  Similarity=-0.008  Sum_probs=94.4

Q ss_pred             cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHHHhccccCchhHH--HHHhc
Q 023913           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--AVETG  144 (275)
Q Consensus        72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~~~~~  144 (275)
                      .+.++...+|++++|+|+||||||||+++|+|+++|    + |+|.+.+.++...  ....+.++|++|++..  +..+.
T Consensus         3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcccC
Confidence            344555678999999999999999999999999998    7 9999988776432  1223579999998631  10010


Q ss_pred             C-------CC-ccc-hHHHHHHHHHHHHHhhcc---ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          145 G-------CP-HAA-IREDISINLGPLEELSNL---FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       145 ~-------~~-~~~-~~~~~~~~~~~L~~l~~~---~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .       +. ... .......+.+.++.+...   ...+..+.+ |+||+||++|||+++ +|+|+|+| |++++|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            0       00 000 111122344456666544   234555556 999999999999999 89999999 899999754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=168.42  Aligned_cols=152  Identities=13%  Similarity=0.053  Sum_probs=100.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~  126 (275)
                      .+..+.|+    +..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....+
T Consensus        25 ~~l~~~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~  100 (268)
T PRK14248         25 KDLSIYYG----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL  100 (268)
T ss_pred             EEEEEEeC----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence            44445453    3455666666678899999999999999999999999864     56 9999988776532  22345


Q ss_pred             HHhccccCchhH-------HHHHhcCCCccc-hHH-HHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913          127 LMRNGALPEERI-------RAVETGGCPHAA-IRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~~~~-~~~-~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~  192 (275)
                      ++.++|++|++.       +++.+....... ... ....+...+..+...    ...+..+.+ |+||+||++|||+|+
T Consensus       101 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~  180 (268)
T PRK14248        101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA  180 (268)
T ss_pred             hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            667999999852       112111000000 000 011122344444321    123445555 999999999999999


Q ss_pred             -CceEEEEe-CCCCCCcccc
Q 023913          193 -DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       193 -~~~vlllD-~t~g~d~~~~  210 (275)
                       +|+++|+| |++++|....
T Consensus       181 ~~p~lllLDEPt~~LD~~~~  200 (268)
T PRK14248        181 MKPAVLLLDEPASALDPISN  200 (268)
T ss_pred             CCCCEEEEcCCCcccCHHHH
Confidence             99999999 9999987543

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.6e-20  Score=175.36  Aligned_cols=151  Identities=18%  Similarity=0.154  Sum_probs=117.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      +|++|.|..   ++.++.++++...+|..++|+||+|+||||++++|..++.-+ |.|.+++.|+.......+++.||+|
T Consensus       541 snvtF~Y~p---~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV  617 (790)
T KOG0056|consen  541 SNVTFAYDP---GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV  617 (790)
T ss_pred             EEeEEecCC---CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence            899999987   677777777788899999999999999999999999999977 9999999999887788899999999


Q ss_pred             CchhHHHHHh------cCCCccchHHHH-----HHHHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERIRAVET------GGCPHAAIREDI-----SINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~~~~~~------~~~~~~~~~~~~-----~~~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      |||...++.+      .+.+..+..+-.     +.+.+.+-  ...+++...++|     |||++||+++||+++ +|.+
T Consensus       618 PQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl--~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i  695 (790)
T KOG0056|consen  618 PQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRIL--QFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI  695 (790)
T ss_pred             cCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHh--cCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence            9997533321      133333332221     22222222  234567777777     999999999999999 8999


Q ss_pred             EEEe-CCCCCCcccc
Q 023913          197 YIID-VSGGDKIPRK  210 (275)
Q Consensus       197 lllD-~t~g~d~~~~  210 (275)
                      ++|| +|+.+|....
T Consensus       696 IlLDEATSALDT~tE  710 (790)
T KOG0056|consen  696 ILLDEATSALDTNTE  710 (790)
T ss_pred             EEEcchhhhcCCccH
Confidence            9999 7777887643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.83  E-value=8.1e-21  Score=157.89  Aligned_cols=108  Identities=16%  Similarity=0.083  Sum_probs=86.0

Q ss_pred             ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccC
Q 023913           57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALP  134 (275)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~  134 (275)
                      ..+.|++    +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+ +++.++|++
T Consensus         6 l~~~~~~----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~   81 (163)
T cd03216           6 ITKRFGG----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY   81 (163)
T ss_pred             EEEEECC----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence            3455544    34555666667889999999999999999999999999998 99999887776544322 344577766


Q ss_pred             chhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          135 EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       135 q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      |                                     .    |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        82 q-------------------------------------L----S~G~~qrl~laral~~~p~illlDEP~~~LD~~~  117 (163)
T cd03216          82 Q-------------------------------------L----SVGERQMVEIARALARNARLLILDEPTAALTPAE  117 (163)
T ss_pred             e-------------------------------------c----CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence            5                                     2    999999999999999 99999999 888888643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.83  E-value=2e-20  Score=181.18  Aligned_cols=143  Identities=15%  Similarity=0.014  Sum_probs=101.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHH-HHHhccccCchhH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~----  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|  + |+|.+.+.++....... .++.+||+||++.    
T Consensus        13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   92 (500)
T TIGR02633        13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE   92 (500)
T ss_pred             CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence            44555566666788999999999999999999999999986  5 99999888776544333 3356999999852    


Q ss_pred             ----HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 ----RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 ----~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                          +++.+.....     .........+.+.++.+...... ++.+.+ |+||+||++||++|+ +|+++|+| |++++
T Consensus        93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L  172 (500)
T TIGR02633        93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL  172 (500)
T ss_pred             CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence                2222221110     11111223345567776654433 455666 999999999999999 99999999 99999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus       173 D~~~  176 (500)
T TIGR02633       173 TEKE  176 (500)
T ss_pred             CHHH
Confidence            8653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=7.3e-21  Score=159.52  Aligned_cols=146  Identities=19%  Similarity=0.125  Sum_probs=104.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      ++..+.|++.+  +.++.+.+....+|+.++++||+|||||||||+++|+..|. |+|.+++..+....     ..-|+|
T Consensus         7 ~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvV   79 (259)
T COG4525           7 SHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVV   79 (259)
T ss_pred             hheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeE
Confidence            56678888844  34555666667789999999999999999999999999998 99999887765421     124778


Q ss_pred             CchhH--------HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          134 PEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ||+..        .|+.++..... .-.+....+.+.+..+++....+..+.+ ||||+||+.+||||+ +|.++++| |
T Consensus        80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP  159 (259)
T COG4525          80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP  159 (259)
T ss_pred             eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence            88762        34444422211 1112223344456666666655666667 999999999999999 99999999 5


Q ss_pred             CCCCCc
Q 023913          202 SGGDKI  207 (275)
Q Consensus       202 t~g~d~  207 (275)
                      ...+|.
T Consensus       160 fgAlDa  165 (259)
T COG4525         160 FGALDA  165 (259)
T ss_pred             hhhHHH
Confidence            555554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.7e-20  Score=180.59  Aligned_cols=142  Identities=18%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchh---------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEER---------  137 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~---------  137 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.+||++|++         
T Consensus       277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  356 (510)
T PRK09700        277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF  356 (510)
T ss_pred             CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence            3555666667889999999999999999999999999998 999998877654333 23456799999972         


Q ss_pred             --HHHHHhcCCC-----cc-----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          138 --IRAVETGGCP-----HA-----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       138 --~~~~~~~~~~-----~~-----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                        .+++.+....     ..     ........+.+.++.+... ...++.+.+ |+||+||+.|||+|+ +|.|+|+| |
T Consensus       357 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP  436 (510)
T PRK09700        357 SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEP  436 (510)
T ss_pred             cHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCC
Confidence              1222221110     00     0111123345577777664 456777777 999999999999999 89999999 9


Q ss_pred             CCCCCcccc
Q 023913          202 SGGDKIPRK  210 (275)
Q Consensus       202 t~g~d~~~~  210 (275)
                      ++++|...+
T Consensus       437 t~~LD~~~~  445 (510)
T PRK09700        437 TRGIDVGAK  445 (510)
T ss_pred             CCCcCHHHH
Confidence            999997653

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.83  E-value=4.8e-20  Score=172.63  Aligned_cols=143  Identities=14%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~---  138 (275)
                      +|++-.+..++++...+|++.+|+|.||||||||+++|.|+++|+ |+|.++|.+..-.++.+. +..||+|.|.+.   
T Consensus        13 ~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~   92 (501)
T COG3845          13 RFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP   92 (501)
T ss_pred             EcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence            567677777888888999999999999999999999999999999 999999998876666554 446999999874   


Q ss_pred             -----HHHHhcCCCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 -----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 -----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                           +|+.++....    ...++..+++.+..++++..-.++..+.+ |.|++||+.|.++|. ++.++||| ||+-+-
T Consensus        93 ~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLT  172 (501)
T COG3845          93 TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLT  172 (501)
T ss_pred             ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence                 4444544332    22233334455566667777778888888 999999999999999 99999999 544443

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.83  E-value=5.9e-21  Score=171.52  Aligned_cols=150  Identities=16%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      .+..+.|++  +...++.+.++...+|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|+|
T Consensus         6 ~nls~~~~~--~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~   83 (275)
T cd03289           6 KDLTAKYTE--GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIP   83 (275)
T ss_pred             EEEEEEeCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence            345566653  123345555556678999999999999999999999999984499999998887666677888999999


Q ss_pred             chhHHHHH---hcCCCcc-chHHHHHHHHHHHHHhhccc-------cccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          135 EERIRAVE---TGGCPHA-AIREDISINLGPLEELSNLF-------KADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       135 q~~~~~~~---~~~~~~~-~~~~~~~~~~~~L~~l~~~~-------~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      |++..+..   -+..+.. ...+.   +.+.++.+....       .++..+.|     |+||+||++|||+++ +|+|+
T Consensus        84 q~~~lf~~tv~~nl~~~~~~~~~~---~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il  160 (275)
T cd03289          84 QKVFIFSGTFRKNLDPYGKWSDEE---IWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL  160 (275)
T ss_pred             CCcccchhhHHHHhhhccCCCHHH---HHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            98742211   0011111 11111   122333332221       22222222     999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| |++++|...
T Consensus       161 llDEpts~LD~~~  173 (275)
T cd03289         161 LLDEPSAHLDPIT  173 (275)
T ss_pred             EEECccccCCHHH
Confidence            999 899988653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=99.83  E-value=1.8e-20  Score=165.49  Aligned_cols=193  Identities=21%  Similarity=0.238  Sum_probs=147.2

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCCh--HHHHHh--ccccCchhHHHHH-hc
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED--GEFLMR--NGALPEERIRAVE-TG  144 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~--~~~~~~--ig~v~q~~~~~~~-~~  144 (275)
                      .+...+....+.++..|+|+.|||||||||.|+.- +...+|+++-|+++...+  ..+...  .|-+.   .+.++ -+
T Consensus        46 ~~~~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~-~hgKRIAVIlNEfGes~die~sl~~~~~gg~ly---Eewv~L~N  121 (391)
T KOG2743|consen   46 DVVTKSSLGARIPVTIITGYLGAGKTTLLNYILTG-QHGKRIAVILNEFGESSDIEKSLAVSQEGGELY---EEWVELRN  121 (391)
T ss_pred             ccccccCCCCccceEEEEecccCChHHHHHHHHcc-CCCceEEEEhhhcccchhhhHHHHhccccchHH---HHHHHhcC
Confidence            55566677788999999999999999999999864 233689999999997432  222221  12111   12333 57


Q ss_pred             CCCccchHHHHHHHHHHHHHhh-cccccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCcc----
Q 023913          145 GCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP----  208 (275)
Q Consensus       145 ~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~----  208 (275)
                      ||.||+.+.+..+   +++.+. .+.++|.+++|+.|.+-++++|..|           +|..|.++|+...+...    
T Consensus       122 GClCCtVk~~gvr---aie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k  198 (391)
T KOG2743|consen  122 GCLCCTVKDNGVR---AIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEK  198 (391)
T ss_pred             CeEEEEecchHHH---HHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccC
Confidence            9999999887755   444443 4558999999999999999999875           26789999986653221    


Q ss_pred             -c----cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913          209 -R----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       209 -~----~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                       .    ....|+.+||.|++||+||+++  +++.++++.++.+|.-++++++. .....+..++++.+|
T Consensus       199 ~~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~I~~INslA~m~~Tk-y~~vdlsnvLdi~ay  264 (391)
T KOG2743|consen  199 PDGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQRIRSINSLAQMIETK-YSRVDLSNVLDIHAF  264 (391)
T ss_pred             cccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHHHHHhhhHHHhhhhh-hccccHHHhcccccc
Confidence             1    1246899999999999999999  89999999999999999999875 456679999998877

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.1e-20  Score=167.00  Aligned_cols=143  Identities=12%  Similarity=0.044  Sum_probs=95.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++..  .....+++.++|++|++.
T Consensus        22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  101 (264)
T PRK14243         22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN  101 (264)
T ss_pred             CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence            3445556666668899999999999999999999999876     36 999998876642  223455678999999752


Q ss_pred             -------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          139 -------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                             +++.+..................++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus       102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~  181 (264)
T PRK14243        102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA  181 (264)
T ss_pred             cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence                   111111110000001111122233332221    123444555 999999999999999 99999999 8999


Q ss_pred             CCccc
Q 023913          205 DKIPR  209 (275)
Q Consensus       205 ~d~~~  209 (275)
                      +|...
T Consensus       182 LD~~~  186 (264)
T PRK14243        182 LDPIS  186 (264)
T ss_pred             CCHHH
Confidence            98754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=1.1e-20  Score=170.60  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=100.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~  126 (275)
                      .+..+.|+    +..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....+
T Consensus        43 ~~l~~~~~----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~  118 (285)
T PRK14254         43 RDLNVFYG----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL  118 (285)
T ss_pred             EEEEEEEC----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence            34444443    3445555556667899999999999999999999999986     56 9999988776432  23345


Q ss_pred             HHhccccCchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913          127 LMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D  193 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~  193 (275)
                      ++.++|++|++.       +++.+..............+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +
T Consensus       119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~  198 (285)
T PRK14254        119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD  198 (285)
T ss_pred             hccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence            678999999852       111111000000001112233345444331    123445556 999999999999999 9


Q ss_pred             ceEEEEe-CCCCCCccc
Q 023913          194 YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~~  209 (275)
                      |+|+|+| |++++|...
T Consensus       199 p~lLLLDEPts~LD~~~  215 (285)
T PRK14254        199 PEVILMDEPASALDPVA  215 (285)
T ss_pred             CCEEEEeCCCCCCCHHH
Confidence            9999999 999999754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.83  E-value=3.2e-20  Score=166.15  Aligned_cols=140  Identities=16%  Similarity=0.041  Sum_probs=98.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh---HHHHHhccccCchhHHH----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA----  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~----  140 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|++|++...    
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  105 (268)
T PRK10419         26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR  105 (268)
T ss_pred             eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence            3555555666889999999999999999999999999998 999998887765433   23566899999985210    


Q ss_pred             ------HHhcCC--CccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          141 ------VETGGC--PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       141 ------~~~~~~--~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                            +.....  ...........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|.|+|+| |++++|..
T Consensus       106 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~  185 (268)
T PRK10419        106 KTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV  185 (268)
T ss_pred             CCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence                  000000  0000111112334455555443 234555556 999999999999999 99999999 89999864

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.83  E-value=9.4e-21  Score=163.03  Aligned_cols=130  Identities=18%  Similarity=0.124  Sum_probs=92.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE-----  142 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~-----  142 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..+..     
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~  101 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN  101 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHH
Confidence            3455555556789999999999999999999999999998 9999988877555555667789999998621100     


Q ss_pred             hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +... .....   ....+.++       .+..+.+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus       102 l~~~-~~~~~---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  160 (207)
T cd03369         102 LDPF-DEYSD---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT  160 (207)
T ss_pred             hccc-CCCCH---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            0000 00000   11111222       2333444 999999999999999 99999999 898988654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.83  E-value=2.9e-20  Score=182.16  Aligned_cols=154  Identities=11%  Similarity=-0.046  Sum_probs=108.8

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++.-..+ .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++.+.+..++++.++|
T Consensus       341 ~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~  420 (555)
T TIGR01194       341 KDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA  420 (555)
T ss_pred             EEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcE
Confidence            67788887610012 3555555666889999999999999999999999999998 999999999988777788889999


Q ss_pred             cCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcc-------cccccccccChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          133 LPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       133 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-------~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                      ++|++..+..+-... ...........+.++.+...       .+++....-|+||+||++|||+++ +|+|+|+| |++
T Consensus       421 v~q~~~lf~~ti~~n-~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts  499 (555)
T TIGR01194       421 IFADFHLFDDLIGPD-EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA  499 (555)
T ss_pred             EccChhhhhhhhhcc-cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            999975433322111 11001112222344433222       223332122999999999999999 99999999 888


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       500 ~LD~~~  505 (555)
T TIGR01194       500 DQDPAF  505 (555)
T ss_pred             CCCHHH
Confidence            888654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=5.6e-21  Score=163.08  Aligned_cols=133  Identities=11%  Similarity=-0.032  Sum_probs=92.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (275)
                      +.+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....    .+.++|++|++.        +
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~   89 (195)
T PRK13541         14 KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFE   89 (195)
T ss_pred             cEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHH
Confidence            3455655556789999999999999999999999999998 99999887764321    245788887641        1


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.+.....    .....+...++.+......+..+.+ |+||+||+.+||+++ +|+++|+| |++++|...
T Consensus        90 ~l~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~  158 (195)
T PRK13541         90 NLKFWSEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN  158 (195)
T ss_pred             HHHHHHHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            111110000    0111223344555444444555556 999999999999999 89999999 888988654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.4e-20  Score=165.19  Aligned_cols=142  Identities=16%  Similarity=0.070  Sum_probs=97.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|+||++. 
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14270         17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP   96 (251)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence            4455566666688999999999999999999999999874     5 9999988877532  22345677999999863 


Q ss_pred             ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+..... . ........+.+.++.+...    ...+..+.+ |+||+||++|||+++ +|+|+|+| |++
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  176 (251)
T PRK14270         97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS  176 (251)
T ss_pred             CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence                  2221111000 0 0111112223345544321    123445556 999999999999999 99999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       177 ~LD~~~  182 (251)
T PRK14270        177 ALDPIS  182 (251)
T ss_pred             cCCHHH
Confidence            998754

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.3e-20  Score=165.95  Aligned_cols=163  Identities=14%  Similarity=0.029  Sum_probs=106.5

Q ss_pred             CccccCCCCCCC---ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEE
Q 023913           43 RVYHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAA  113 (275)
Q Consensus        43 ~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i  113 (275)
                      ++.++.+.....   .+..+.|+    ++.++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+
T Consensus         9 ~~~~~~~~~~~~l~~~nl~~~~~----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   84 (267)
T PRK14237          9 RHIITFPEEEIALSTKDLHVYYG----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY   84 (267)
T ss_pred             ceeEecCCCCeEEEEeeEEEEEC----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence            344444444333   44455553    4556666666678899999999999999999999999986     46 99999


Q ss_pred             EeccCCCC--ChHHHHHhccccCchhH-------HHHHhcCCCc-cchHHH-HHHHHHHHHHhhcc----ccccccccc-
Q 023913          114 VTNDIFTK--EDGEFLMRNGALPEERI-------RAVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-  177 (275)
Q Consensus       114 ~~~d~~~~--~~~~~~~~ig~v~q~~~-------~~~~~~~~~~-~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-  177 (275)
                      .+.++...  ....+++.++|++|++.       +++.++.... ...... ...+.+.++.+...    ...+..+.+ 
T Consensus        85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~L  164 (267)
T PRK14237         85 RGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTL  164 (267)
T ss_pred             CCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccC
Confidence            88776432  23345667999999852       1221110000 000111 12223344444332    123455556 


Q ss_pred             ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~  198 (267)
T PRK14237        165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPIS  198 (267)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            999999999999999 89999999 999998754

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.4e-20  Score=165.00  Aligned_cols=145  Identities=18%  Similarity=0.165  Sum_probs=97.8

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe------ccCCCCChHHHHHhccccCchh
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~------~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      |+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+      .++.......+++.++|++|++
T Consensus        20 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~   99 (257)
T PRK14246         20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP   99 (257)
T ss_pred             cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence            44555666666667889999999999999999999999999987 8776554      3333333445667899999986


Q ss_pred             H--------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          138 I--------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       138 ~--------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      .        +++.+..... ....... ..+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus       100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDE  179 (257)
T PRK14246        100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDE  179 (257)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            3        1111111000 0001111 2233455555432    123445555 999999999999999 89999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       180 Pt~~LD~~~  188 (257)
T PRK14246        180 PTSMIDIVN  188 (257)
T ss_pred             CCccCCHHH
Confidence            999998754

>PLN03232 ABC transporter C family member; Provisional

Probab=99.83  E-value=4e-20  Score=198.21  Aligned_cols=149  Identities=15%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +. .++.+.++..++|+.++|+|++|||||||+++|+|+++|+ |+|.+++.|+.+.+..++++++++
T Consensus      1238 ~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232       1238 EDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred             EEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Confidence            778888865   43 4555555666789999999999999999999999999998 999999999998888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +|+..+.  ..+. +++..+.+  .+.++..  ..++|..+.|     |+|||||++|||||+ +|+
T Consensus      1315 VpQdp~LF~gTIr~NL~~~~--~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232       1315 IPQSPVLFSGTVRFNIDPFS--EHND-ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred             ECCCCeeeCccHHHHcCCCC--CCCH-HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            999983       2222221  1221 12211111  2222221  3466777766     999999999999999 899


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+||| ||+.+|...
T Consensus      1392 ILILDEATSaLD~~T 1406 (1495)
T PLN03232       1392 ILVLDEATASVDVRT 1406 (1495)
T ss_pred             EEEEECCcccCCHHH
Confidence            99999 788888643

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=165.30  Aligned_cols=142  Identities=15%  Similarity=0.102  Sum_probs=96.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++  |   + |+|.+.+.++...  ....+++.++|+||++. 
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (252)
T PRK14256         17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP   96 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence            445666666668899999999999999999999999985  3   5 9999988776432  22345667999999852 


Q ss_pred             -------HHHHhcCCCcc--chHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPHA--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.+......  ...+....+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  176 (252)
T PRK14256         97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA  176 (252)
T ss_pred             CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence                   12211110100  11111122334455544321    23344555 999999999999999 89999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       177 ~gLD~~~  183 (252)
T PRK14256        177 SALDPIS  183 (252)
T ss_pred             ccCCHHH
Confidence            9998754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.1e-20  Score=166.78  Aligned_cols=143  Identities=12%  Similarity=0.023  Sum_probs=94.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|++++     + |+|.+.+.++...  ....+++.++|++|++.
T Consensus        32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~  111 (274)
T PRK14265         32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN  111 (274)
T ss_pred             CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence            34455566666688999999999999999999999999752     4 9999988776432  22345678999999852


Q ss_pred             -------HHHHhcCCCccchHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          139 -------RAVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       139 -------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                             +++.+..................++.+..    ....+..+.+ |+||+||++|||+|+ +|+++|+| |+++
T Consensus       112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~  191 (274)
T PRK14265        112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA  191 (274)
T ss_pred             cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence                   11111110000000001111223333322    1223444555 999999999999999 99999999 9999


Q ss_pred             CCccc
Q 023913          205 DKIPR  209 (275)
Q Consensus       205 ~d~~~  209 (275)
                      +|...
T Consensus       192 LD~~~  196 (274)
T PRK14265        192 LDPIS  196 (274)
T ss_pred             CCHHH
Confidence            98754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=2.7e-20  Score=166.84  Aligned_cols=143  Identities=15%  Similarity=0.060  Sum_probs=96.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++..  .....+++.++|++|++. 
T Consensus        37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  116 (271)
T PRK14238         37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP  116 (271)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence            455556666668899999999999999999999999987     57 999998877642  223455678999999853 


Q ss_pred             ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhh----ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCP-HAAIRED-ISINLGPLEELS----NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~----~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.++... ....... ...+.+.++.+.    .....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus       117 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~  196 (271)
T PRK14238        117 FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTS  196 (271)
T ss_pred             ccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                  222211000 0000111 111222333321    11223445555 999999999999999 89999999 999


Q ss_pred             CCCcccc
Q 023913          204 GDKIPRK  210 (275)
Q Consensus       204 g~d~~~~  210 (275)
                      ++|...+
T Consensus       197 ~LD~~~~  203 (271)
T PRK14238        197 ALDPIST  203 (271)
T ss_pred             cCCHHHH
Confidence            9997653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.1e-20  Score=164.24  Aligned_cols=150  Identities=15%  Similarity=0.099  Sum_probs=98.9

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHH
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFL  127 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~  127 (275)
                      ++.+.|++    ..++.+.++...+|++++|+|+||||||||+++|+|++++     + |+|.+.+.++...  ....++
T Consensus         8 ~l~~~~~~----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   83 (250)
T PRK14240          8 DLDLFYGD----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR   83 (250)
T ss_pred             EEEEEECC----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence            34445543    4455566666678999999999999999999999998762     5 9999998876531  233456


Q ss_pred             HhccccCchhH-------HHHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-
Q 023913          128 MRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-  192 (275)
Q Consensus       128 ~~ig~v~q~~~-------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-  192 (275)
                      +.++|++|++.       +++.++.....  ........+.+.++.+...    ...+..+.+ |+||+||++|||+|+ 
T Consensus        84 ~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  163 (250)
T PRK14240         84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV  163 (250)
T ss_pred             ccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence            67999999852       11111100000  0001112222334443221    123444555 999999999999999 


Q ss_pred             CceEEEEe-CCCCCCccc
Q 023913          193 DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 ~~~vlllD-~t~g~d~~~  209 (275)
                      +|+++|+| |++++|...
T Consensus       164 ~p~llllDEP~~~LD~~~  181 (250)
T PRK14240        164 EPEVLLMDEPTSALDPIS  181 (250)
T ss_pred             CCCEEEEeCCCccCCHHH
Confidence            99999999 999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.82  E-value=3.9e-20  Score=179.35  Aligned_cols=143  Identities=18%  Similarity=0.181  Sum_probs=102.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++..... ..+++.++|++|++.      
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  354 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP  354 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence            345556666678899999999999999999999999998 46 999998877643332 234456999999841      


Q ss_pred             -----HHHHhcCC--Ccc----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 -----RAVETGGC--PHA----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 -----~~~~~~~~--~~~----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                           +++.++..  .+.    ........+.+.++.+... ...++.+.+ |+||+||+.|||+|+ +|.++||| |++
T Consensus       355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~  434 (506)
T PRK13549        355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR  434 (506)
T ss_pred             CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence                 11211110  000    1111223345577777664 345677777 999999999999999 99999999 999


Q ss_pred             CCCcccc
Q 023913          204 GDKIPRK  210 (275)
Q Consensus       204 g~d~~~~  210 (275)
                      ++|...+
T Consensus       435 ~LD~~~~  441 (506)
T PRK13549        435 GIDVGAK  441 (506)
T ss_pred             CcCHhHH
Confidence            9998654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=166.55  Aligned_cols=151  Identities=18%  Similarity=0.112  Sum_probs=101.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCC-hHHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGEFL  127 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~-~~~~~  127 (275)
                      .++.+.|+    ++.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.... ...++
T Consensus        25 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~  100 (276)
T PRK14271         25 VNLTLGFA----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR  100 (276)
T ss_pred             eeEEEEEC----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence            44445554    34555666666788999999999999999999999999885     5 99999887765432 23456


Q ss_pred             HhccccCchhH-------HHHHhcCCCc--cchHHHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-
Q 023913          128 MRNGALPEERI-------RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-  192 (275)
Q Consensus       128 ~~ig~v~q~~~-------~~~~~~~~~~--~~~~~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-  192 (275)
                      +.++|++|++.       +++.+.....  ....+....+.+.++.+....    ..+..+.+ |+||+||++|||+|+ 
T Consensus       101 ~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~  180 (276)
T PRK14271        101 RRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV  180 (276)
T ss_pred             hheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence            78999999852       1222111000  111111112223444443321    12344455 999999999999999 


Q ss_pred             CceEEEEe-CCCCCCccc
Q 023913          193 DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 ~~~vlllD-~t~g~d~~~  209 (275)
                      +|+|+|+| |++++|...
T Consensus       181 ~p~lllLDEPt~~LD~~~  198 (276)
T PRK14271        181 NPEVLLLDEPTSALDPTT  198 (276)
T ss_pred             CCCEEEEcCCcccCCHHH
Confidence            89999999 999998754

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.82  E-value=4.2e-20  Score=163.04  Aligned_cols=142  Identities=14%  Similarity=0.014  Sum_probs=95.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHH---
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRA---  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~---  140 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|++  +|+ |+|.+.+.++...++...+ +.++|++|++..+   
T Consensus        14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (248)
T PRK09580         14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV   93 (248)
T ss_pred             eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence            44555666666789999999999999999999999995  577 9999998877654444443 4689999986311   


Q ss_pred             -----HHhcCCC---ccc---hH-HH-HHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          141 -----VETGGCP---HAA---IR-ED-ISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       141 -----~~~~~~~---~~~---~~-~~-~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                           .......   ...   .. .. ...+.+.++.+... ...+..+. + |+||+||++|||+++ +|+++|+| |+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt  173 (248)
T PRK09580         94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD  173 (248)
T ss_pred             hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence                 1000000   000   00 01 11222344444332 22333343 4 999999999999999 89999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       174 ~~LD~~~  180 (248)
T PRK09580        174 SGLDIDA  180 (248)
T ss_pred             ccCCHHH
Confidence            9998754

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.82  E-value=3e-20  Score=157.03  Aligned_cols=121  Identities=24%  Similarity=0.250  Sum_probs=88.9

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHHhccccCchhHHHHHhcCCC
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....+ ..+++.++|++|++...   ...+
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~   91 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE---GLVL   91 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC---cccC
Confidence            445555556789999999999999999999999999998 999999887765543 33456799999874200   0111


Q ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+..+.+....            ..    |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        92 ~~t~~e~l~~~~------------~L----S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~  139 (182)
T cd03215          92 DLSVAENIALSS------------LL----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA  139 (182)
T ss_pred             CCcHHHHHHHHh------------hc----CHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH
Confidence            223332221100            03    999999999999999 99999999 888888654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.8e-20  Score=163.62  Aligned_cols=143  Identities=14%  Similarity=0.097  Sum_probs=96.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC-CChHHHHHhccccCchhH-
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT-KEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~-~~~~~~~~~ig~v~q~~~-  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.. .....+++.++|++|++. 
T Consensus        15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~   94 (249)
T PRK14253         15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP   94 (249)
T ss_pred             CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence            34456666666788999999999999999999999999885     4 999998877642 234456678999999853 


Q ss_pred             ------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+..... ....... ..+.+.++.+...    ...+..+.+ |+||+||+.|||+|+ +|+|+|+| |++
T Consensus        95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~  174 (249)
T PRK14253         95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS  174 (249)
T ss_pred             CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence                  1111110000 0001111 1222233333221    223444555 999999999999999 89999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       175 ~LD~~~  180 (249)
T PRK14253        175 ALDPIA  180 (249)
T ss_pred             cCCHHH
Confidence            998754

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.2e-20  Score=167.84  Aligned_cols=142  Identities=16%  Similarity=0.044  Sum_probs=95.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCC--CChHHHHHhccccCchhHH
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~  139 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++..  .....+++.++|++|++..
T Consensus        20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l   99 (259)
T PRK14260         20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP   99 (259)
T ss_pred             eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence            4455566666688999999999999999999999999874     4 999998877643  1223456689999998631


Q ss_pred             -------HHHhcCCCcc--chHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          140 -------AVETGGCPHA--AIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       140 -------~~~~~~~~~~--~~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                             ++.+......  ........+.+.++.+..    ....+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus       100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  179 (259)
T PRK14260        100 FPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS  179 (259)
T ss_pred             CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence                   1111100000  000111122334444432    1234455556 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       180 ~LD~~~  185 (259)
T PRK14260        180 ALDPIA  185 (259)
T ss_pred             cCCHHH
Confidence            998754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4e-20  Score=163.65  Aligned_cols=142  Identities=15%  Similarity=0.043  Sum_probs=95.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14251         17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP   96 (251)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence            445555666667899999999999999999999999986     35 9999988776432  22345667999999852 


Q ss_pred             ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCP-HAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+.... .....+. ...+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~  176 (251)
T PRK14251         97 FPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS  176 (251)
T ss_pred             CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence                  112111000 0000111 11223344444331    223445555 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       177 ~LD~~~  182 (251)
T PRK14251        177 ALDPIS  182 (251)
T ss_pred             cCCHHH
Confidence            998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.82  E-value=7.8e-21  Score=168.18  Aligned_cols=116  Identities=20%  Similarity=0.163  Sum_probs=82.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~  149 (275)
                      .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.            .++|++|+..        +++........
T Consensus        23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~   90 (246)
T cd03237          23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFY   90 (246)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhcc
Confidence            469999999999999999999999999998 99887652            4677777642        11111000000


Q ss_pred             chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .   ......+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus        91 ~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~  150 (246)
T cd03237          91 T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ  150 (246)
T ss_pred             c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            0   001123345555554445666666 999999999999999 99999999 899998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.82  E-value=6.4e-20  Score=159.85  Aligned_cols=127  Identities=22%  Similarity=0.252  Sum_probs=92.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH----------HHHhcCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----------AVETGGC  146 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~----------~~~~~~~  146 (275)
                      ..+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.     ..++.++|++|++..          ++..+..
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~   77 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT   77 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence            3579999999999999999999999999998 99999886642     234679999997521          1112111


Q ss_pred             Cc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..     .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~  148 (223)
T TIGR03771        78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT  148 (223)
T ss_pred             cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            00     00011122344566666665555666666 999999999999999 99999999 999998754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.82  E-value=2.8e-20  Score=159.49  Aligned_cols=120  Identities=16%  Similarity=0.061  Sum_probs=88.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHH-HhccccCchhHHHHHh
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIRAVET  143 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~~~~~  143 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+  ++|+ |+|.+++.++......... ..++|++|++..+   
T Consensus        13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~---   89 (200)
T cd03217          13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI---   89 (200)
T ss_pred             EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc---
Confidence            3445555556678999999999999999999999999  4677 9999999887765544433 3599999985321   


Q ss_pred             cCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +..+..+       .+         +....+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        90 ---~~~~~~~-------~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  139 (200)
T cd03217          90 ---PGVKNAD-------FL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA  139 (200)
T ss_pred             ---cCccHHH-------HH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence               1111111       11         111123 999999999999999 99999999 899998654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=163.86  Aligned_cols=143  Identities=17%  Similarity=0.124  Sum_probs=95.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|++|++.
T Consensus        15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14262         15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT   94 (250)
T ss_pred             CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence            34455566666678999999999999999999999999873     6 9999988776432  12345667999999853


Q ss_pred             -------HHHHhcCCCc-cchH-HHHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPH-AAIR-EDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~-~~~~-~~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.+..... .... .....+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~  174 (250)
T PRK14262         95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence                   1111110000 0000 11111223344433221    23445555 999999999999999 89999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       175 ~~LD~~~  181 (250)
T PRK14262        175 SALDPIA  181 (250)
T ss_pred             cccCHHH
Confidence            9998754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.82  E-value=7.5e-21  Score=168.75  Aligned_cols=131  Identities=15%  Similarity=0.111  Sum_probs=91.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh--c
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET--G  144 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~--~  144 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+           ...++|++|++.....+  +
T Consensus        17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~~~l~~~   85 (251)
T PRK09544         17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLDTTLPLT   85 (251)
T ss_pred             ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccccccChh
Confidence            44555666666789999999999999999999999999998 9988753           13588888875211000  0


Q ss_pred             CCCcc--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          145 GCPHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       145 ~~~~~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .....  ........+.+.++.+......+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  155 (251)
T PRK09544         86 VNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG  155 (251)
T ss_pred             HHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            00000  0000012233456666555445666666 999999999999999 89999999 899998654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.82  E-value=2.9e-20  Score=162.18  Aligned_cols=141  Identities=17%  Similarity=-0.019  Sum_probs=94.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-HHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAV  141 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~~  141 (275)
                      +|++..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+....     ....++.+.... +++
T Consensus        31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~tv~enl  105 (224)
T cd03220          31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPELTGRENI  105 (224)
T ss_pred             hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCCcHHHHH
Confidence            455566666666677889999999999999999999999999998 9999887654311     112333333222 222


Q ss_pred             HhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+..... ...........+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~  177 (224)
T cd03220         106 YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF  177 (224)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            2211000 11111112233455555555555666677 999999999999999 89999999 899998653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=163.90  Aligned_cols=143  Identities=15%  Similarity=0.050  Sum_probs=96.5

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc---cCC--C-CcEEEEeccCCCCC--hHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF---LRD--K-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~---l~~--~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~  138 (275)
                      +..++.+.++...+|++++|+|+||||||||+++|+|+   ++|  + |+|.+.+.++....  ...+++.++|+||++.
T Consensus        15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   94 (250)
T PRK14245         15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN   94 (250)
T ss_pred             CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence            34455566666688999999999999999999999996   454  4 99999988775421  2355667999999852


Q ss_pred             -------HHHHhcCCCcc-chHH-HHHHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~~-~~~~-~~~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.++..... ...+ ....+.+.++.+....    ..+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  174 (250)
T PRK14245         95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA  174 (250)
T ss_pred             cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                   11111100000 0011 1122334555554321    23444555 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       175 ~~LD~~~  181 (250)
T PRK14245        175 SALDPIS  181 (250)
T ss_pred             ccCCHHH
Confidence            9998754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.9e-20  Score=163.75  Aligned_cols=142  Identities=17%  Similarity=0.129  Sum_probs=94.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCC--CChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|      .|+|.+.+.++..  .....+++.++|++|++. 
T Consensus        17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   96 (252)
T PRK14272         17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP   96 (252)
T ss_pred             EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence            4455566566688999999999999999999999999875      3999998877643  223355667999999852 


Q ss_pred             -------HHHHhcCC-CccchHHH-HHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGC-PHAAIRED-ISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++..... ......+. ...+.+.+..+..    ....+..+.+ |+||+||++|||+|+ +|+|+|+| |+
T Consensus        97 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~  176 (252)
T PRK14272         97 FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT  176 (252)
T ss_pred             CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                   11111100 00000111 1112222232221    1223555556 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       177 ~~LD~~~  183 (252)
T PRK14272        177 SALDPAS  183 (252)
T ss_pred             ccCCHHH
Confidence            9998754

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=2.6e-20  Score=154.45  Aligned_cols=144  Identities=17%  Similarity=0.123  Sum_probs=107.6

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-------------HHHHHh
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-------------GEFLMR  129 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-------------~~~~~~  129 (275)
                      +|+...++.-++....+|+++.|+|.+||||||||+||.=+..|+ |.|.+.+.++....+             ..++.+
T Consensus        15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~   94 (256)
T COG4598          15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR   94 (256)
T ss_pred             hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence            677777777777778889999999999999999999999999999 999998877643211             123456


Q ss_pred             ccccCchhHHHHHhcC------CCc----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          130 NGALPEERIRAVETGG------CPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       130 ig~v~q~~~~~~~~~~------~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      .|++||.+....-++.      +|-    .+-.+....+...|..++...+.+.++.. ||||+||++|||||+ +|.++
T Consensus        95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vm  174 (256)
T COG4598          95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVM  174 (256)
T ss_pred             hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceE
Confidence            8999998642211111      110    11123334556677777777777777777 999999999999999 99999


Q ss_pred             EEe-CCCCCCc
Q 023913          198 IID-VSGGDKI  207 (275)
Q Consensus       198 llD-~t~g~d~  207 (275)
                      ++| ||+.+|+
T Consensus       175 LFDEPTSALDP  185 (256)
T COG4598         175 LFDEPTSALDP  185 (256)
T ss_pred             eecCCcccCCH
Confidence            999 8888875

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.4e-20  Score=164.40  Aligned_cols=144  Identities=14%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++  |   + |+|.+.+.++...  ....+++.++|++|++.
T Consensus        18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   97 (253)
T PRK14261         18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN   97 (253)
T ss_pred             CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence            3456666666678899999999999999999999999865  2   4 9999988776543  22345667999999863


Q ss_pred             H-------HHHhcCCCcc--chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 R-------AVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ~-------~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      .       ++.+......  ........+.+.++.+...    ...+..+.+ |+||+||+.|||+++ +|+++|+| |+
T Consensus        98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  177 (253)
T PRK14261         98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC  177 (253)
T ss_pred             cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            1       1111100000  0011111222334433221    123445555 999999999999999 99999999 99


Q ss_pred             CCCCcccc
Q 023913          203 GGDKIPRK  210 (275)
Q Consensus       203 ~g~d~~~~  210 (275)
                      +++|...+
T Consensus       178 ~gLD~~~~  185 (253)
T PRK14261        178 SALDPIAT  185 (253)
T ss_pred             ccCCHHHH
Confidence            99987643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.1e-20  Score=167.75  Aligned_cols=142  Identities=17%  Similarity=0.118  Sum_probs=95.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l  131 (286)
T PRK14275         52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP  131 (286)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence            445556666668899999999999999999999999864     37 9999988766432  12245667999999852 


Q ss_pred             ------HHHHhcCCC-ccc-hHHHHHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCP-HAA-IREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~-~~~-~~~~~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+.... ... .......+.+.++.+..    ....+..+.+ |+||+||+.|||+|+ +|+++|+| |++
T Consensus       132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~  211 (286)
T PRK14275        132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS  211 (286)
T ss_pred             CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                  122111100 000 01111222334444432    1233455556 999999999999999 89999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       212 gLD~~~  217 (286)
T PRK14275        212 ALDPKA  217 (286)
T ss_pred             cCCHHH
Confidence            998754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=6.5e-20  Score=177.56  Aligned_cols=143  Identities=18%  Similarity=0.171  Sum_probs=102.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCCCh-HHHHHhccccCchhH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMRNGALPEERI------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~------  138 (275)
                      ++++.+.++...+|++++|+|+||||||||+++|+|+++| + |+|.+.+.++..... ..+++++||++|++.      
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~  352 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP  352 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence            4455566666788999999999999999999999999985 6 999998877653322 344567999999841      


Q ss_pred             -----HHHHhcCCC-c-----cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 -----RAVETGGCP-H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 -----~~~~~~~~~-~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                           +++.++... .     .........+.+.++.+.... ..+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus       353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~  432 (500)
T TIGR02633       353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR  432 (500)
T ss_pred             CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence                 111121110 0     011111233455677776643 35667777 999999999999999 89999999 999


Q ss_pred             CCCcccc
Q 023913          204 GDKIPRK  210 (275)
Q Consensus       204 g~d~~~~  210 (275)
                      ++|....
T Consensus       433 ~LD~~~~  439 (500)
T TIGR02633       433 GVDVGAK  439 (500)
T ss_pred             CcCHhHH
Confidence            9997654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.82  E-value=3.7e-20  Score=154.39  Aligned_cols=117  Identities=21%  Similarity=0.150  Sum_probs=86.2

Q ss_pred             ccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCc
Q 023913           57 EPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (275)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (275)
                      +.+.|++   .+..+.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.           +.++|++|
T Consensus         6 ~~~~~~~---~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q   71 (166)
T cd03223           6 LSLATPD---GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQ   71 (166)
T ss_pred             EEEEcCC---CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECC
Confidence            3455544   334555665666889999999999999999999999999998 99987541           56899999


Q ss_pred             hhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++..       ...+..+.+..          .     ...+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        72 ~~~~-------~~~tv~~nl~~----------~-----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~  126 (166)
T cd03223          72 RPYL-------PLGTLREQLIY----------P-----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES  126 (166)
T ss_pred             CCcc-------ccccHHHHhhc----------c-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence            8521       11222222210          0     1233 999999999999999 99999999 888988644

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.82  E-value=3e-20  Score=164.97  Aligned_cols=139  Identities=13%  Similarity=-0.030  Sum_probs=95.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----C-CcEEEEeccCCCCChHHHHHhccccCchhHH--H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--A  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~  140 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|    + |+|.+.+.++..  .....+.++|++|++..  .
T Consensus        16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--~~~~~~~i~~v~q~~~~~~~   93 (254)
T PRK10418         16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--CALRGRKIATIMQNPRSAFN   93 (254)
T ss_pred             cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--cccccceEEEEecCCccccC
Confidence            3445566666688999999999999999999999999998    8 999998877642  11123569999998520  0


Q ss_pred             --------HHhcCCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          141 --------VETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       141 --------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                              ..... ...........+.+.++.+....   ..+..+.+ |+||+||++|||+|+ +|+|+|+| |++++|
T Consensus        94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD  172 (254)
T PRK10418         94 PLHTMHTHARETC-LALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLD  172 (254)
T ss_pred             ccccHHHHHHHHH-HHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence                    00000 00000011123344566655433   23455555 999999999999999 89999999 899998


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      ...
T Consensus       173 ~~~  175 (254)
T PRK10418        173 VVA  175 (254)
T ss_pred             HHH
Confidence            754

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.2e-20  Score=182.61  Aligned_cols=141  Identities=16%  Similarity=0.068  Sum_probs=97.5

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC----------CCCChHH---HH-Hhcccc
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----------FTKEDGE---FL-MRNGAL  133 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~----------~~~~~~~---~~-~~ig~v  133 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++          .......   ++ +.+||+
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v  109 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI  109 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence            4555666666889999999999999999999999999998 9998766432          1112222   22 369999


Q ss_pred             CchhH----------HHHHhcCCC--ccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~----------~~~~~~~~~--~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      +|++.          +++.++...  .....+....+.+.|+.++...   ..+..+.+ |+||+||++||++|+ +|+|
T Consensus       110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l  189 (623)
T PRK10261        110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV  189 (623)
T ss_pred             EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence            99751          122211100  1111122234455677776532   34666777 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       190 LllDEPt~~LD~~~  203 (623)
T PRK10261        190 LIADEPTTALDVTI  203 (623)
T ss_pred             EEEeCCCCccCHHH
Confidence            9999 899998654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.82  E-value=5.4e-20  Score=157.07  Aligned_cols=119  Identities=21%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcC
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG  145 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~  145 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|++  +|+ |+|.+.+.++..   ..+++.++|++|++.      .
T Consensus        23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~------~   93 (194)
T cd03213          23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDI------L   93 (194)
T ss_pred             cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCccc------C
Confidence            3455555566789999999999999999999999999  888 999998877653   245677999998742      1


Q ss_pred             CCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+..+..+.+...    ..+     ...    |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        94 ~~~~t~~~~i~~~----~~~-----~~L----S~G~~qrv~laral~~~p~illlDEP~~~LD~~~  146 (194)
T cd03213          94 HPTLTVRETLMFA----AKL-----RGL----SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS  146 (194)
T ss_pred             CCCCcHHHHHHHH----HHh-----ccC----CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence            1223333332110    001     022    999999999999999 99999999 888888643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.82  E-value=7.2e-20  Score=162.03  Aligned_cols=142  Identities=15%  Similarity=-0.003  Sum_probs=96.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~-----  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+  ++|+ |+|.+.+.++.........+ .++|++|++.     
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~   99 (252)
T CHL00131         20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV   99 (252)
T ss_pred             EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence            4455566666688999999999999999999999997  5677 99999888776544333333 4778888742     


Q ss_pred             ---HHHHhcCCC--------ccchHHHHHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ---RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ---~~~~~~~~~--------~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                         +++......        .....+....+.+.++.+... ...+..+. . |+||+||++|||+|+ +|+|+|+| |+
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  179 (252)
T CHL00131        100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD  179 (252)
T ss_pred             cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence               121111000        000011112334456655543 23445554 3 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       180 ~~LD~~~  186 (252)
T CHL00131        180 SGLDIDA  186 (252)
T ss_pred             ccCCHHH
Confidence            9998764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.82  E-value=3.2e-20  Score=184.11  Aligned_cols=141  Identities=16%  Similarity=0.025  Sum_probs=101.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH---HHHHhccccCchhH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------  138 (275)
                      +++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .++++++|+||++.      
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            3555666666889999999999999999999999999998 9999998887654332   23457999999852      


Q ss_pred             ----HHHHhcCCC-cc-chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ----RAVETGGCP-HA-AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ----~~~~~~~~~-~~-~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                          +++...... .. ...+....+.+.|+.++.. ...++.+.+ |+||+||++|||+|+ +|+|+|+| |++++|..
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~  497 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS  497 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence                111111000 00 1111123344567777663 345677777 999999999999999 99999999 89999865


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       498 ~  498 (623)
T PRK10261        498 I  498 (623)
T ss_pred             H
Confidence            3

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=5.4e-20  Score=162.87  Aligned_cols=142  Identities=15%  Similarity=0.081  Sum_probs=95.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC------CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~------g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+      |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (251)
T PRK14249         17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP   96 (251)
T ss_pred             eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence            44555666666889999999999999999999999999874      8999988776432  22345677999999863 


Q ss_pred             ------HHHHhcCCCc-cchHHHH-HHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~-~~~~~~~-~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+..... ....+.. ....+.+..+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |++
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~  176 (251)
T PRK14249         97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS  176 (251)
T ss_pred             CcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                  1121111100 0011111 1122233333221    123444555 999999999999999 89999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       177 ~LD~~~  182 (251)
T PRK14249        177 ALDPVS  182 (251)
T ss_pred             cCCHHH
Confidence            998754

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.82  E-value=6.3e-20  Score=157.54  Aligned_cols=125  Identities=22%  Similarity=0.161  Sum_probs=83.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~  140 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+             +++|++|++.       ++
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en   85 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN   85 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence            3455555566789999999999999999999999999998 9998876             4788888753       22


Q ss_pred             HHhcCCCccchHHHHHHHHH---HHHHhhc-----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          141 VETGGCPHAAIREDISINLG---PLEELSN-----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~---~L~~l~~-----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +.+. ... . ........+   ..+.+..     ....+....+ |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        86 l~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  162 (204)
T cd03250          86 ILFG-KPF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV  162 (204)
T ss_pred             hccC-CCc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence            2221 111 1 111111111   1111111     1112233344 999999999999999 89999999 888888643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.82  E-value=9.7e-20  Score=161.99  Aligned_cols=151  Identities=14%  Similarity=0.049  Sum_probs=100.8

Q ss_pred             ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+..+.|++   . ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus        23 ~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~   99 (257)
T cd03288          23 HDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI   99 (257)
T ss_pred             EEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence            445556654   2 34555555566789999999999999999999999999998 999999988766555667778999


Q ss_pred             cCchhHHHHH-----hcCCCccchHHHHHHH------HHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          133 LPEERIRAVE-----TGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       133 v~q~~~~~~~-----~~~~~~~~~~~~~~~~------~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      ++|++..+..     +...... ........      .+.+..+  ......+....+ |+||+||++|||+|+ +|+++
T Consensus       100 v~q~~~l~~~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  178 (257)
T cd03288         100 ILQDPILFSGSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL  178 (257)
T ss_pred             ECCCCcccccHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            9998632110     1111001 11111111      1112221  111112222334 999999999999999 89999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| |++++|...
T Consensus       179 llDEPt~gLD~~~  191 (257)
T cd03288         179 IMDEATASIDMAT  191 (257)
T ss_pred             EEeCCccCCCHHH
Confidence            999 999998754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.82  E-value=6e-20  Score=178.60  Aligned_cols=142  Identities=17%  Similarity=0.029  Sum_probs=97.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE-eccC---CCCC---hHHHHHhccccCchhH--
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDI---FTKE---DGEFLMRNGALPEERI--  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~-~~d~---~~~~---~~~~~~~ig~v~q~~~--  138 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+. +.+.   ....   ...+++.+||++|++.  
T Consensus       298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~  377 (520)
T TIGR03269       298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY  377 (520)
T ss_pred             eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccC
Confidence            3555666667889999999999999999999999999998 999885 5332   2111   1233457999999852  


Q ss_pred             ------HHHHhcCCCccchHHHHHHHHHHHHHhhccc-----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          139 ------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       139 ------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                            +++................+.+.++.+....     ..+..+.+ |+||+||++|||+|+ +|+|+|+| |+++
T Consensus       378 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~  457 (520)
T TIGR03269       378 PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT  457 (520)
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                  1221110000111111123445666665542     24566667 999999999999999 89999999 9999


Q ss_pred             CCcccc
Q 023913          205 DKIPRK  210 (275)
Q Consensus       205 ~d~~~~  210 (275)
                      +|...+
T Consensus       458 LD~~~~  463 (520)
T TIGR03269       458 MDPITK  463 (520)
T ss_pred             CCHHHH
Confidence            997553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.82  E-value=4.6e-20  Score=179.80  Aligned_cols=142  Identities=16%  Similarity=0.111  Sum_probs=99.7

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChH---HHHHhccccCchhH-------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~-------  138 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++..|+|.+.+.++......   .+++.++|++|++.       
T Consensus       300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~  379 (529)
T PRK15134        300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL  379 (529)
T ss_pred             eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence            45555566667899999999999999999999999986349999988776544322   23457999999851       


Q ss_pred             ---HHHHhcCCCc---cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ---RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ---~~~~~~~~~~---~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                         +++.++....   .........+.+.++.+... ...+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus       380 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~  459 (529)
T PRK15134        380 NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT  459 (529)
T ss_pred             cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence               1111111000   01111123344567776654 235666666 999999999999999 89999999 99999976


Q ss_pred             cc
Q 023913          209 RK  210 (275)
Q Consensus       209 ~~  210 (275)
                      .+
T Consensus       460 ~~  461 (529)
T PRK15134        460 VQ  461 (529)
T ss_pred             HH
Confidence            43

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.81  E-value=1.4e-19  Score=194.24  Aligned_cols=151  Identities=17%  Similarity=0.111  Sum_probs=112.1

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +. .++.+.++..++|+.++|+|++|||||||+++|+++++|+ |+|.++|.|+.+.....+++++++
T Consensus      1288 ~nVsf~Y~~---~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957      1288 RNYCLRYRE---DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred             EEEEEEeCC---CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence            788898976   43 3455555566789999999999999999999999999998 999999999999988999999999


Q ss_pred             cCchhHHHH---HhcCCC--ccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          133 LPEERIRAV---ETGGCP--HAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       133 v~q~~~~~~---~~~~~~--~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      +||++..+.   ..+..+  ..+. +++..+.+  .+.++..  ..++|..+.|     |+||+||++|||||+ +|+|+
T Consensus      1365 VpQdp~LF~gTIr~NLdp~~~~sd-eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957      1365 IPQDPVLFSGSLRMNLDPFSQYSD-EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred             ECCCCcccCccHHHHcCcccCCCH-HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence            999984211   111111  1221 12222111  2222221  2467777776     999999999999999 89999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      ||| ||+.+|...
T Consensus      1444 iLDEaTSalD~~T 1456 (1522)
T TIGR00957      1444 VLDEATAAVDLET 1456 (1522)
T ss_pred             EEECCcccCCHHH
Confidence            999 788887643

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.81  E-value=5.7e-20  Score=163.50  Aligned_cols=139  Identities=17%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHHH---hcccc
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLM---RNGAL  133 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~~---~ig~v  133 (275)
                      .++.+.+ +..+|++++|+|+|||||||||++|+|+++|+ |+|.           +.+.++.... ...++   .++|+
T Consensus        15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~i~~~   92 (255)
T cd03236          15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TKLLEGDVKVIVK   92 (255)
T ss_pred             hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HHhhhcccceeee
Confidence            3555554 67789999999999999999999999999998 9985           4454443221 12222   35666


Q ss_pred             CchhHHHHH-hcC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          134 PEERIRAVE-TGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       134 ~q~~~~~~~-~~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      +|....... +.+  ..............+.++.+......+..+.+ |+||+||+.+||+|+ +|+++|+| |++++|.
T Consensus        93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~  172 (255)
T cd03236          93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI  172 (255)
T ss_pred             cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence            665321110 000  00011111123344566666555445555566 999999999999999 89999999 8999987


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       173 ~~  174 (255)
T cd03236         173 KQ  174 (255)
T ss_pred             HH
Confidence            54

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.81  E-value=8.6e-20  Score=176.80  Aligned_cols=142  Identities=20%  Similarity=0.144  Sum_probs=101.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH--------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------  138 (275)
                      ..+.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+. .+++.++|++|++.        
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            3455665666889999999999999999999999999988 9999888776543333 33457999999852        


Q ss_pred             ---HHHHhcCCCcc-------chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          139 ---RAVETGGCPHA-------AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       139 ---~~~~~~~~~~~-------~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                         +++.++.....       ........+.+.++.+... ...+..+.+ |+||+||+.||++|+ +|+|+||| |+++
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence               11212111100       0111122345567777653 446677777 999999999999999 89999999 9999


Q ss_pred             CCcccc
Q 023913          205 DKIPRK  210 (275)
Q Consensus       205 ~d~~~~  210 (275)
                      +|...+
T Consensus       427 LD~~~~  432 (501)
T PRK11288        427 IDVGAK  432 (501)
T ss_pred             CCHhHH
Confidence            997653

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=9e-20  Score=161.40  Aligned_cols=142  Identities=15%  Similarity=0.051  Sum_probs=94.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CC---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RD---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|++  .|   + |+|.+.+.++...  ....+++.++|++|++. 
T Consensus        18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   97 (252)
T PRK14239         18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP   97 (252)
T ss_pred             eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence            44555666666889999999999999999999999985  35   4 9999988776432  22345567999999852 


Q ss_pred             ------HHHHhcCCC-ccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCP-HAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~-~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+.... ....... ...+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus        98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  177 (252)
T PRK14239         98 FPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS  177 (252)
T ss_pred             CcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence                  122111000 0000111 12222334444321    123445555 999999999999999 99999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       178 ~LD~~~  183 (252)
T PRK14239        178 ALDPIS  183 (252)
T ss_pred             ccCHHH
Confidence            998754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.81  E-value=1e-19  Score=176.28  Aligned_cols=141  Identities=15%  Similarity=0.121  Sum_probs=101.8

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH---------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~---------  138 (275)
                      ++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+||++|++.         
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            345555566789999999999999999999999999998 9999988777544332 34457999999841         


Q ss_pred             --HHHHhcCCC---c----cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 --RAVETGGCP---H----AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 --~~~~~~~~~---~----~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                        +++.+....   .    .........+.+.++.+... ...+..+.+ |+||+||+.|||+|+ +|.++||| |++++
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L  426 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV  426 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence              122121110   0    01111123345567777663 446777777 999999999999999 89999999 99999


Q ss_pred             Ccccc
Q 023913          206 KIPRK  210 (275)
Q Consensus       206 d~~~~  210 (275)
                      |....
T Consensus       427 D~~~~  431 (501)
T PRK10762        427 DVGAK  431 (501)
T ss_pred             CHhHH
Confidence            97653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.81  E-value=1.8e-19  Score=155.33  Aligned_cols=189  Identities=28%  Similarity=0.346  Sum_probs=131.9

Q ss_pred             cccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc
Q 023913           72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA  150 (275)
Q Consensus        72 ~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~  150 (275)
                      .+++..... -.+++|+|++|||||||++.++..+....++.+..+++....+....+..|.-     .....++|.||.
T Consensus        12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~-----~~~l~~gcic~~   86 (207)
T TIGR00073        12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP-----AIQINTGKECHL   86 (207)
T ss_pred             HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCc-----EEEEcCCCcccC
Confidence            344444444 67889999999999999999998754335788888887543355555544420     112267888875


Q ss_pred             hHHHHHHHHHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCC
Q 023913          151 IREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (275)
Q Consensus       151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl  228 (275)
                      ....+.   ..+..+.. ..++.+++|+.|- ..+..+  .+. .-.++++|++.+++.+..+..++..++++++||+|+
T Consensus        87 ~~~~~~---~~l~~~~~-~~~d~IiIEt~G~l~~~~~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl  160 (207)
T TIGR00073        87 DAHMVA---HALEDLPL-DDIDLLFIENVGNLVCPADF--DLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADL  160 (207)
T ss_pred             ChHHHH---HHHHHhcc-CCCCEEEEecCCCcCCCccc--ccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHc
Confidence            443332   34554433 3569999998771 111111  222 456789999888776666667788999999999999


Q ss_pred             CccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          229 ASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+......+.+.+.+++++|.++++++|+++++|+++++++..
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~  203 (207)
T TIGR00073       161 AEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLE  203 (207)
T ss_pred             cccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            8653344667777888889999999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.81  E-value=8.4e-20  Score=177.95  Aligned_cols=141  Identities=12%  Similarity=0.038  Sum_probs=98.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCCChHH---HH-HhccccCchhH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~  138 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|     + |+|.+.+.++......+   .+ +.+||++|++.
T Consensus        23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~  102 (529)
T PRK15134         23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM  102 (529)
T ss_pred             eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence            455555556678999999999999999999999999986     5 99999888775443322   22 46999999852


Q ss_pred             H----------HHHhc--CCCccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          139 R----------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       139 ~----------~~~~~--~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      .          ++...  ........+....+.+.++.+....   ..++.+.+ |+||+||++|||+|+ +|+++|+| 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDE  182 (529)
T PRK15134        103 VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADE  182 (529)
T ss_pred             hhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            1          01100  0000111112233455677766543   23566667 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++++|...
T Consensus       183 Pt~~LD~~~  191 (529)
T PRK15134        183 PTTALDVSV  191 (529)
T ss_pred             CCCccCHHH
Confidence            899998654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.81  E-value=1.3e-19  Score=172.12  Aligned_cols=144  Identities=15%  Similarity=0.076  Sum_probs=114.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~---  138 (275)
                      +|+.-+++.++++...+||+++|+|.||||||||+|+|+|.++|+ |+|.+.+......++.+.. ..|..++|+..   
T Consensus        17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p   96 (500)
T COG1129          17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP   96 (500)
T ss_pred             EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence            777888999999999999999999999999999999999999999 9999998887655655444 45888999863   


Q ss_pred             -----HHHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 -----RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 -----~~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                           +|+.++..+..     ..+.....+.+.|..+.....++..+.+ |.||+|.++||||+. +++|+||| ||+.+
T Consensus        97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaL  176 (500)
T COG1129          97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAAL  176 (500)
T ss_pred             CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                 44445544432     1233335556677777654447777888 999999999999999 89999999 77776


Q ss_pred             Cc
Q 023913          206 KI  207 (275)
Q Consensus       206 d~  207 (275)
                      ..
T Consensus       177 t~  178 (500)
T COG1129         177 TV  178 (500)
T ss_pred             CH
Confidence            54

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.81  E-value=4.8e-20  Score=198.83  Aligned_cols=141  Identities=16%  Similarity=0.031  Sum_probs=104.6

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (275)
                      .++.+.++...+|++++|+|+||||||||+|+|+|+++|+ |+|.+.+.++.. ...+.++.+||+||++.        +
T Consensus      1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257      1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred             eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccCCCCCCHHH
Confidence            4666666667889999999999999999999999999999 999999888753 23455678999999852        2


Q ss_pred             HHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      ++.+.... .....+....+.+.|+.+......++.+.+ |+||+||+++|+||+ +|+|++|| |++|+|...+
T Consensus      2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257      2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence            22211110 011111112234466777666666777777 999999999999999 89999999 9999997654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.81  E-value=9.2e-20  Score=163.46  Aligned_cols=151  Identities=14%  Similarity=0.073  Sum_probs=100.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCCCC--ChHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~~~--~~~~~  126 (275)
                      .++.+.|+    ++.++.+.++...+|++++|+|+||||||||+++|+|++++     + |+|.+.+.++...  ....+
T Consensus        29 ~nl~~~~~----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~  104 (272)
T PRK14236         29 RNLNLFYG----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL  104 (272)
T ss_pred             EEEEEEEC----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence            44455553    34455566666688999999999999999999999999873     6 9999988877532  23345


Q ss_pred             HHhccccCchhH-------HHHHhcC-CCccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913          127 LMRNGALPEERI-------RAVETGG-CPHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~-~~~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~  192 (275)
                      ++.++|++|++.       +++.+.. ......... ...+.+.++.+...    ...+..+.+ |+||+||++|||+|+
T Consensus       105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  184 (272)
T PRK14236        105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA  184 (272)
T ss_pred             hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            678999999852       1111110 000000111 11223334433321    123445555 999999999999999


Q ss_pred             -CceEEEEe-CCCCCCccc
Q 023913          193 -DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 -~~~vlllD-~t~g~d~~~  209 (275)
                       +|+|+|+| |++++|...
T Consensus       185 ~~p~lllLDEPt~gLD~~~  203 (272)
T PRK14236        185 IEPEVLLLDEPTSALDPIS  203 (272)
T ss_pred             CCCCEEEEeCCcccCCHHH
Confidence             99999999 999998754

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1e-19  Score=160.89  Aligned_cols=143  Identities=15%  Similarity=0.057  Sum_probs=96.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|++.     |+ |+|.+.+.++...  ....+++.++|+||++.
T Consensus        15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   94 (250)
T PRK14266         15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN   94 (250)
T ss_pred             CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence            3445556666667899999999999999999999999864     36 9999998876532  23355678999999853


Q ss_pred             -------HHHHhcCCCc-cchHH-HHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGCPH-AAIRE-DISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~~~-~~~~~-~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++....... ....+ ....+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~  174 (250)
T PRK14266         95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC  174 (250)
T ss_pred             cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence                   1111110000 00011 112223344443321    123444555 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       175 ~gLD~~~  181 (250)
T PRK14266        175 SALDPIS  181 (250)
T ss_pred             ccCCHHH
Confidence            9999754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=2.3e-19  Score=146.52  Aligned_cols=144  Identities=15%  Similarity=0.124  Sum_probs=110.3

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCC----hHHHHHhccccCch
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKE----DGEFLMRNGALPEE  136 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~----~~~~~~~ig~v~q~  136 (275)
                      +|+..+++.+..+....|+.+.++||+|||||||++.|.-+.-|. |...+-++.+.  ...    -.++++++|+++|.
T Consensus        11 ~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq   90 (242)
T COG4161          11 FYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ   90 (242)
T ss_pred             ccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence            778899999999999999999999999999999999998887787 98888777653  221    23567889999997


Q ss_pred             hH--------HHHHhcCCCcc--chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          137 RI--------RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       137 ~~--------~~~~~~~~~~~--~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                      -.        +++.-..|.-.  +..+....+.+.|.++.+....|+.+.. ||||+||++|||||. .|.|+++| ||.
T Consensus        91 y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdepta  170 (242)
T COG4161          91 YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA  170 (242)
T ss_pred             hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccc
Confidence            42        11111112111  1223345567788888777778887777 999999999999998 99999999 777


Q ss_pred             CCCc
Q 023913          204 GDKI  207 (275)
Q Consensus       204 g~d~  207 (275)
                      .+|+
T Consensus       171 aldp  174 (242)
T COG4161         171 ALDP  174 (242)
T ss_pred             ccCH
Confidence            7775

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.3e-20  Score=162.99  Aligned_cols=156  Identities=19%  Similarity=0.101  Sum_probs=107.5

Q ss_pred             cccCCC-cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC----hHHHHHhccccCchhHHHHHhcCCCcc
Q 023913           76 NFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGCPHA  149 (275)
Q Consensus        76 ~~~~~g-eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~~~~~~~~~~  149 (275)
                      .|..++ .+++|-|++|||||||+|+|+|+.+|+ |.|.+++.-+.+..    -..-.|++|||||+...+..++..-+.
T Consensus        18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL   97 (352)
T COG4148          18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL   97 (352)
T ss_pred             eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence            344444 799999999999999999999999999 99998876544321    122356899999996544333222221


Q ss_pred             chH---HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccccc-----------
Q 023913          150 AIR---EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGG-----------  212 (275)
Q Consensus       150 ~~~---~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~~~-----------  212 (275)
                      .+.   .......+.+..++..+..++.+.. |||++||++|+|||+ .|.++++| |.+.+|.+.|..           
T Consensus        98 ~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e  177 (352)
T COG4148          98 RYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE  177 (352)
T ss_pred             hhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh
Confidence            110   0111223344555566666776666 999999999999999 99999999 888888876531           


Q ss_pred             -------------ccccccCEEEEecCCCCcc
Q 023913          213 -------------PGITQADLLVINKTDLASA  231 (275)
Q Consensus       213 -------------~~i~~adiivlNK~Dl~~~  231 (275)
                                   +..+.||-||+-+.-.+..
T Consensus       178 ~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A  209 (352)
T COG4148         178 INIPILYVSHSLDEVLRLADRVVVLENGKVKA  209 (352)
T ss_pred             cCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence                         1235788777766555544

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=9.9e-20  Score=167.53  Aligned_cols=153  Identities=15%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEF  126 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~  126 (275)
                      .++.+.|++  +...++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |.|.+++.++...  ....+
T Consensus        84 ~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l  161 (329)
T PRK14257         84 RNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL  161 (329)
T ss_pred             EeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh
Confidence            566666654  12334555556667899999999999999999999999985     45 9999999887532  22456


Q ss_pred             HHhccccCchhH-------HHHHhcCCC-ccchHHHH-HHHHHHHHHhhccc----cccccccc-ChhHHHHHHHHHHhc
Q 023913          127 LMRNGALPEERI-------RAVETGGCP-HAAIREDI-SINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       127 ~~~ig~v~q~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~L~~l~~~~----~~d~~~~e-S~G~~q~~~laral~  192 (275)
                      ++.++|+||++.       +++.++... .....+.. ..+...++.+....    ..+..... |+||+||++||||++
T Consensus       162 r~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~  241 (329)
T PRK14257        162 RTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA  241 (329)
T ss_pred             hccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            678999999873       222221100 01111111 11233444433211    22333344 999999999999999


Q ss_pred             -CceEEEEe-CCCCCCccc
Q 023913          193 -DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 -~~~vlllD-~t~g~d~~~  209 (275)
                       +|+|+|+| |++++|...
T Consensus       242 ~~p~IlLLDEPts~LD~~~  260 (329)
T PRK14257        242 LEPEVLLMDEPTSALDPIA  260 (329)
T ss_pred             hCCCEEEEeCCcccCCHHH
Confidence             99999999 899998643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.81  E-value=1.7e-19  Score=174.15  Aligned_cols=147  Identities=16%  Similarity=0.027  Sum_probs=103.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCC-ChHHHHHhccccCchhHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA  140 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~  140 (275)
                      .|++..++.+.++...+|++++|+||||||||||+++|+|++++ + |+|.+.+.++... .....++.++|++|++...
T Consensus       269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~  348 (490)
T PRK10938        269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD  348 (490)
T ss_pred             EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence            34445555666666788999999999999999999999998876 4 9999988765321 2233556799999975211


Q ss_pred             ---------HHhcC-CCcc-----chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          141 ---------VETGG-CPHA-----AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       141 ---------~~~~~-~~~~-----~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                               +...+ ....     ........+.+.++.+.... ..+..+.+ |+||+||++||++|+ +|+|+|+| |
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP  428 (490)
T PRK10938        349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP  428 (490)
T ss_pred             cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence                     11111 1000     01111233455677776654 56677777 999999999999999 99999999 9


Q ss_pred             CCCCCcccc
Q 023913          202 SGGDKIPRK  210 (275)
Q Consensus       202 t~g~d~~~~  210 (275)
                      ++++|....
T Consensus       429 t~gLD~~~~  437 (490)
T PRK10938        429 LQGLDPLNR  437 (490)
T ss_pred             cccCCHHHH
Confidence            999997543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.81  E-value=7.8e-20  Score=177.82  Aligned_cols=143  Identities=16%  Similarity=0.120  Sum_probs=97.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEe-----------------------ccCC-
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDIF-  119 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~-----------------------~d~~-  119 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|++  +|+ |+|.+.+                       .++. 
T Consensus        12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~   91 (520)
T TIGR03269        12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP   91 (520)
T ss_pred             CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence            445555666667889999999999999999999999996  687 9998862                       1110 


Q ss_pred             ------CCCh---HHHHHhccccCch-hH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-Ch
Q 023913          120 ------TKED---GEFLMRNGALPEE-RI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SG  179 (275)
Q Consensus       120 ------~~~~---~~~~~~ig~v~q~-~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~  179 (275)
                            ....   ..+++.++|++|+ ..        +++.+.... .....+....+.+.++.+......+..+.+ |+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg  171 (520)
T TIGR03269        92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG  171 (520)
T ss_pred             cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence                  0011   2345579999996 21        222211100 011112223445567777665556667777 99


Q ss_pred             hHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       180 G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ||+||++||++|+ +|+++||| |++++|...
T Consensus       172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~  203 (520)
T TIGR03269       172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQT  203 (520)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH
Confidence            9999999999999 89999999 899998653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.81  E-value=7.8e-20  Score=164.11  Aligned_cols=142  Identities=16%  Similarity=0.098  Sum_probs=105.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-C----C-CcEEEEeccCCCCChHHHH----HhccccCch
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEE  136 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~  136 (275)
                      ..+++.++++...+||+++|+|.+||||||+.+.|+|+++ +    . |+|.+.+.++...+..+++    +.|+|+||+
T Consensus        17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD   96 (316)
T ss_pred             cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence            3467777777788899999999999999999999999997 3    3 7899999988877765432    369999999


Q ss_pred             hHHHH-----------HhcC-CCcc-chHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          137 RIRAV-----------ETGG-CPHA-AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       137 ~~~~~-----------~~~~-~~~~-~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      +...+           +.-. .... ..++....+.+.|+.++...   ..+.+..| ||||+||+.||.+|+ +|+++|
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI  176 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI  176 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence            74111           1000 0000 11223345566777776653   34666777 999999999999999 999999


Q ss_pred             Ee-CCCCCCcc
Q 023913          199 ID-VSGGDKIP  208 (275)
Q Consensus       199 lD-~t~g~d~~  208 (275)
                      .| ||+++|..
T Consensus       177 ADEPTTALDvt  187 (316)
T COG0444         177 ADEPTTALDVT  187 (316)
T ss_pred             eCCCcchhhHH
Confidence            99 99999863

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.80  E-value=3.2e-20  Score=158.17  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      +..+.|++...+..++.+.++...+|++++|+|+||||||||+++|+|++.  |+ |++.+.+.++.    ..+++.++|
T Consensus         8 ~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~   83 (192)
T cd03232           8 NLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGY   83 (192)
T ss_pred             eeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEE
Confidence            344555431111334445555567899999999999999999999999863  66 99998877653    345567999


Q ss_pred             cCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          133 LPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       133 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++|++..      .+..+..+.+.... .+.        ..    |+||+||++|||+++ +|+++|+| |++++|...
T Consensus        84 ~~q~~~~------~~~~tv~~~l~~~~-~~~--------~L----SgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~  143 (192)
T cd03232          84 VEQQDVH------SPNLTVREALRFSA-LLR--------GL----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA  143 (192)
T ss_pred             ecccCcc------ccCCcHHHHHHHHH-HHh--------cC----CHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH
Confidence            9987421      12233333322100 000        22    999999999999999 89999999 888888654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=164.81  Aligned_cols=143  Identities=17%  Similarity=0.096  Sum_probs=96.9

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-----CC-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      ++.++.+.++...+|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....+++.++|++|++.
T Consensus        57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~  136 (305)
T PRK14264         57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN  136 (305)
T ss_pred             CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence            3455556666678899999999999999999999999986     56 9999988876532  23355678999999853


Q ss_pred             -------HHHHhcCCCc-------------cc-hHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc
Q 023913          139 -------RAVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       139 -------~~~~~~~~~~-------------~~-~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~  192 (275)
                             +++.++....             .. .......+...++.+...    ...+..+.+ |+||+||++|||+|+
T Consensus       137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~  216 (305)
T PRK14264        137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA  216 (305)
T ss_pred             cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence                   1122111000             00 000112223344444321    122444555 999999999999999


Q ss_pred             -CceEEEEe-CCCCCCccc
Q 023913          193 -DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 -~~~vlllD-~t~g~d~~~  209 (275)
                       +|+|+|+| |++++|...
T Consensus       217 ~~p~lLLLDEPtsgLD~~~  235 (305)
T PRK14264        217 VDPEVILMDEPASALDPIA  235 (305)
T ss_pred             cCCCEEEEeCCcccCCHHH
Confidence             89999999 999998754

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.1e-19  Score=161.05  Aligned_cols=143  Identities=13%  Similarity=0.026  Sum_probs=94.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC--C---C-CcEEEEeccCCCC--ChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~--~---~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (275)
                      .+.++.+.++...+|++++|+|+||||||||+++|+|+++  |   + |+|.+.+.++...  ....+++.++|++|++.
T Consensus        17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   96 (252)
T PRK14255         17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN   96 (252)
T ss_pred             CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence            3445556666668899999999999999999999999864  3   4 9999988776431  22344567999999852


Q ss_pred             -------HHHHhcCC-CccchHHH-HHHHHHHHHHhhc----cccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 -------RAVETGGC-PHAAIRED-ISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 -------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~----~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                             +++.+... ......+. .....+.++.+..    ....+..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  176 (252)
T PRK14255         97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT  176 (252)
T ss_pred             cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence                   11111100 00000111 1112223333322    1223445555 999999999999999 99999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       177 ~~LD~~~  183 (252)
T PRK14255        177 SALDPIS  183 (252)
T ss_pred             ccCCHHH
Confidence            9998754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.80  E-value=2.2e-19  Score=173.47  Aligned_cols=143  Identities=15%  Similarity=0.058  Sum_probs=101.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhHH---HHH
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIR---AVE  142 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~---~~~  142 (275)
                      ++++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|++|++..   +..
T Consensus       261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~  340 (491)
T PRK10982        261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY  340 (491)
T ss_pred             CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence            34555666667889999999999999999999999999998 99999887776544332 34568999987420   000


Q ss_pred             -----------hc-CCCc-c--chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          143 -----------TG-GCPH-A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       143 -----------~~-~~~~-~--~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                                 +. .... .  ........+.+.++.+... ...+..+.+ |+||+||+.|||+++ +|+|+||| ||+
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~  420 (491)
T PRK10982        341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR  420 (491)
T ss_pred             CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence                       00 0000 0  1011122334466666553 345777777 999999999999999 99999999 999


Q ss_pred             CCCcccc
Q 023913          204 GDKIPRK  210 (275)
Q Consensus       204 g~d~~~~  210 (275)
                      ++|...+
T Consensus       421 gLD~~~~  427 (491)
T PRK10982        421 GIDVGAK  427 (491)
T ss_pred             ccChhHH
Confidence            9997654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=161.13  Aligned_cols=142  Identities=15%  Similarity=0.062  Sum_probs=95.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCC--ChHHHHHhccccCchhH-
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI-  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~-  138 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|      .|+|.+.+.++...  ....+++.++|++|++. 
T Consensus        20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l   99 (261)
T PRK14258         20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL   99 (261)
T ss_pred             eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence            3455666666788999999999999999999999999987      38888887765321  22345667999998752 


Q ss_pred             ------HHHHhcCCCc-c-chHHHHHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ------RAVETGGCPH-A-AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ------~~~~~~~~~~-~-~~~~~~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                            +++.+..... . ...+....+.+.++.+...    ...+..+.+ |+||+||++|||+|+ +|+|+|+| |++
T Consensus       100 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~  179 (261)
T PRK14258        100 FPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF  179 (261)
T ss_pred             CcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence                  1111110000 0 1111112233344444321    123444555 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       180 ~LD~~~  185 (261)
T PRK14258        180 GLDPIA  185 (261)
T ss_pred             cCCHHH
Confidence            998754

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.80  E-value=2.2e-19  Score=174.33  Aligned_cols=140  Identities=16%  Similarity=0.102  Sum_probs=100.6

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-HHHhccccCchhH----------
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI----------  138 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~----------  138 (275)
                      +.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|+||++.          
T Consensus       279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~  358 (510)
T PRK15439        279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPL  358 (510)
T ss_pred             ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcH
Confidence            44555556789999999999999999999999999998 99999888776544433 3346999999741          


Q ss_pred             -HHHHhc--C-CCc-cchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETG--G-CPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~--~-~~~-~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++...  . ... .........+.+.|+.+... ...+..+.+ |+||+||+.||++|+ +|+|+||| |++++|...
T Consensus       359 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~  438 (510)
T PRK15439        359 AWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSA  438 (510)
T ss_pred             HHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhH
Confidence             111110  0 000 00111112344567777665 456777777 999999999999999 99999999 999999765


Q ss_pred             c
Q 023913          210 K  210 (275)
Q Consensus       210 ~  210 (275)
                      +
T Consensus       439 ~  439 (510)
T PRK15439        439 R  439 (510)
T ss_pred             H
Confidence            4

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.80  E-value=7.2e-20  Score=154.24  Aligned_cols=95  Identities=22%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE  142 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~  142 (275)
                      +|++..++.+ .+...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.            .++|++|+..    
T Consensus         9 ~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~----   71 (177)
T cd03222           9 RYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID----   71 (177)
T ss_pred             EECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC----
Confidence            4555544443 4455779999999999999999999999999998 99988653            2677776420    


Q ss_pred             hcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                                                    .    |+||+||+++||+++ +|+++++| |++++|...
T Consensus        72 ------------------------------L----SgGq~qrv~laral~~~p~lllLDEPts~LD~~~  106 (177)
T cd03222          72 ------------------------------L----SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ  106 (177)
T ss_pred             ------------------------------C----CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence                                          2    999999999999999 89999999 888998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00243 ABC transporter; Provisional

Probab=99.80  E-value=1.8e-19  Score=193.51  Aligned_cols=148  Identities=16%  Similarity=0.094  Sum_probs=111.0

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   +.+ ++.+.++...+|+.++|+|++|||||||+++|+|+++|+ |+|.+++.|+.+.+..++++.++|
T Consensus      1312 ~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243       1312 EGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred             EEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence            788898877   544 455555566789999999999999999999999999998 999999999999888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-C-c
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D-Y  194 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~-~  194 (275)
                      +||++.       +|+...  ...+. +++..+.+  .+.++.  ...++|..+.|     |+||+||++|||||+ + +
T Consensus      1389 VpQdp~LF~gTIreNIdp~--~~~sd-eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243       1389 IPQDPVLFDGTVRQNVDPF--LEASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred             ECCCCccccccHHHHhCcc--cCCCH-HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence            999974       222211  11222 12222111  122221  13457777766     999999999999999 5 7


Q ss_pred             eEEEEe-CCCCCCcc
Q 023913          195 IIYIID-VSGGDKIP  208 (275)
Q Consensus       195 ~vlllD-~t~g~d~~  208 (275)
                      +|+||| ||+.+|..
T Consensus      1466 ~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243       1466 GFILMDEATANIDPA 1480 (1560)
T ss_pred             CEEEEeCCCccCCHH
Confidence            999999 78887754

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=8.4e-20  Score=163.03  Aligned_cols=151  Identities=16%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC-----C-CcEEEEeccCC----CCChH
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF----TKEDG  124 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-----~-g~i~i~~~d~~----~~~~~  124 (275)
                      .+..+.|++    ..++.+.++...+|++++|+|+||||||||+++|+|+++|     + |+|.+.+.+..    .....
T Consensus        20 ~~l~~~~~~----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~   95 (265)
T PRK14252         20 NKLNFYYGG----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI   95 (265)
T ss_pred             EEEEEEECC----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence            344444443    4555666666788999999999999999999999999874     5 99998876542    11233


Q ss_pred             HHHHhccccCchhH-------HHHHhcCC-CccchHHH-HHHHHHHHHHhhcc----ccccccccc-ChhHHHHHHHHHH
Q 023913          125 EFLMRNGALPEERI-------RAVETGGC-PHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE  190 (275)
Q Consensus       125 ~~~~~ig~v~q~~~-------~~~~~~~~-~~~~~~~~-~~~~~~~L~~l~~~----~~~d~~~~e-S~G~~q~~~lara  190 (275)
                      .+++.++|++|++.       +++.++.. ........ .......++.+...    ...+..+.+ |+||+||+.|||+
T Consensus        96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  175 (265)
T PRK14252         96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA  175 (265)
T ss_pred             HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence            55667999999752       12211100 00000111 11222233333221    123444555 9999999999999


Q ss_pred             hc-CceEEEEe-CCCCCCccc
Q 023913          191 LA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       191 l~-~~~vlllD-~t~g~d~~~  209 (275)
                      |+ +|+++|+| |++++|...
T Consensus       176 l~~~p~llllDEPt~gLD~~~  196 (265)
T PRK14252        176 LATDPEILLFDEPTSALDPIA  196 (265)
T ss_pred             HHcCCCEEEEeCCCccCCHHH
Confidence            99 99999999 899998754

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.79  E-value=3.6e-19  Score=163.17  Aligned_cols=187  Identities=18%  Similarity=0.173  Sum_probs=129.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHH------HHhccccCchhHHHHH-hcCCCcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEF------LMRNGALPEERIRAVE-TGGCPHA  149 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~------~~~ig~v~q~~~~~~~-~~~~~~~  149 (275)
                      .+..+++|+|++|||||||++.|...+... .++.++..|+.... ...+      .+..+.   ++..++. +++  +|
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~---~~~~~~r~~~~--~~  128 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSR---HPNAFIRPSPS--SG  128 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcC---CCCeEEEecCC--cc
Confidence            446799999999999999999999988876 68999999987642 2221      111111   1110111 222  22


Q ss_pred             chHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCC
Q 023913          150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA  229 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~  229 (275)
                      ........+.+.+..+ ...+++.+++|+.|.+|....+..++|-.+++++|..+++.+.....+++++|++|+||+|+.
T Consensus       129 ~l~~~a~~~~~~~~~~-~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        129 TLGGVARKTRETMLLC-EAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD  207 (332)
T ss_pred             cccchHHHHHHHHHHH-hccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence            2222223333445444 356799999999999888766666668889999999999988766668899999999999998


Q ss_pred             ccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913          230 SAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       230 ~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +...  .....+...+...+|     ..||+++|+++++|++++++.+.
T Consensus       208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~  256 (332)
T PRK09435        208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIE  256 (332)
T ss_pred             chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            6521  233444455554442     26899999999999999998653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.79  E-value=4.4e-19  Score=189.28  Aligned_cols=153  Identities=10%  Similarity=0.038  Sum_probs=105.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE-eccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~-~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.||+. .+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+. +.++.+.+...+++.+||
T Consensus       386 ~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~  464 (1466)
T PTZ00265        386 KNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGV  464 (1466)
T ss_pred             EEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccE
Confidence            6777888761 1123555666666889999999999999999999999999998 999995 467766666778889999


Q ss_pred             cCchhH-------HHHHhcCCCcc-----------------------------------------chH-----------H
Q 023913          133 LPEERI-------RAVETGGCPHA-----------------------------------------AIR-----------E  153 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~-----------------------------------------~~~-----------~  153 (275)
                      ++|++.       +++.++.....                                         ...           .
T Consensus       465 V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  544 (1466)
T PTZ00265        465 VSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTI  544 (1466)
T ss_pred             ecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccC
Confidence            999963       33434321000                                         000           0


Q ss_pred             HHHHHHHHH-----HHh--hccccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          154 DISINLGPL-----EEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       154 ~~~~~~~~L-----~~l--~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      ....+.+++     ..+  ....+++..+.+     |+||+||++|||||+ +|+|+||| ||+++|..
T Consensus       545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~  613 (1466)
T PTZ00265        545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK  613 (1466)
T ss_pred             CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence            001112222     222  122344444443     999999999999999 99999999 88888864

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.79  E-value=8.4e-20  Score=196.94  Aligned_cols=141  Identities=17%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.        
T Consensus       943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257       943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCcCCCCCCHH
Confidence            44555666667889999999999999999999999999998 999999988753 23455678999999852        


Q ss_pred             HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.+..... ....+....+.+.|+.+++....+..+.+ |+||+||+++|+||+ +|+|+||| |++++|...
T Consensus      1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~s 1096 (2272)
T TIGR01257      1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096 (2272)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence            2222211100 11111123345577777776667777777 999999999999999 99999999 999998654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.79  E-value=4e-19  Score=169.98  Aligned_cols=139  Identities=19%  Similarity=0.078  Sum_probs=100.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~~-----  139 (275)
                      +++.++++...+||+++|+|.+|||||||.++|+|+++|+ |.|.+.+.+ ....   ....++++-++||++..     
T Consensus       305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLnPr  383 (539)
T COG1123         305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccCcc
Confidence            4666777777889999999999999999999999999998 999999977 2222   33456678899998731     


Q ss_pred             ----HHHh-cCCCcc--chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          140 ----AVET-GGCPHA--AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       140 ----~~~~-~~~~~~--~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                          .... ....+.  ...+..+.+.+.++.+.+.. ..++.+.| ||||+||++|||||+ +|.++|+| |++.+|+.
T Consensus       384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs  463 (539)
T COG1123         384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS  463 (539)
T ss_pred             ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence                1000 000011  11111223455666666554 47788888 999999999999999 99999999 77777764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.78  E-value=6.6e-19  Score=168.49  Aligned_cols=140  Identities=19%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-----CcEEEEeccCCCCChHHHH----HhccccCchhHH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-----g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~  139 (275)
                      .++.++++...+||++||+|.+||||||+.+.|+|++++.     |+|.+.+.|+......+.+    ++|+|+||++..
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~  102 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT  102 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence            4666777777889999999999999999999999999843     8999999888776654433    469999999741


Q ss_pred             HHH--h--c-------C-CCccchHHHHHHHHHHHHHhhcccccc--ccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          140 AVE--T--G-------G-CPHAAIREDISINLGPLEELSNLFKAD--LLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       140 ~~~--~--~-------~-~~~~~~~~~~~~~~~~L~~l~~~~~~d--~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      .++  +  +       . .......+....+.+.|+.+++.+...  ++.-+ ||||+||+.||+||+ +|.++|+| ||
T Consensus       103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT  182 (539)
T COG1123         103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT  182 (539)
T ss_pred             hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence            111  0  0       0 000112233355667778777765444  37777 999999999999999 99999999 89


Q ss_pred             CCCCcc
Q 023913          203 GGDKIP  208 (275)
Q Consensus       203 ~g~d~~  208 (275)
                      +.+|..
T Consensus       183 TaLDvt  188 (539)
T COG1123         183 TALDVT  188 (539)
T ss_pred             cccCHH
Confidence            998864

>PLN03211 ABC transporter G-25; Provisional

Probab=99.78  E-value=4.2e-19  Score=176.75  Aligned_cols=142  Identities=18%  Similarity=0.240  Sum_probs=101.1

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---CCcEEEEeccCCCCChHHHHHhccccCchhH--
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI--  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--  138 (275)
                      +|++++++.+.+....+|++++|+|||||||||||++|+|.++|   +|+|.+++.++.    ....+++||++|++.  
T Consensus        77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~  152 (659)
T PLN03211         77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILY  152 (659)
T ss_pred             cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccC
Confidence            45556666677777788999999999999999999999999887   399999887653    234567999999862  


Q ss_pred             ------HHHHhcC---CC-ccchHHHHHHHHHHHHHhhccccccc-----cccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          139 ------RAVETGG---CP-HAAIREDISINLGPLEELSNLFKADL-----LLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       139 ------~~~~~~~---~~-~~~~~~~~~~~~~~L~~l~~~~~~d~-----~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                            +++.+..   .+ .....+....+.+.++.+++....+.     .+.+ |+||+||++||++|+ +|+|+++| 
T Consensus       153 ~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE  232 (659)
T PLN03211        153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE  232 (659)
T ss_pred             CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence                  2222211   11 11111222334556666665544333     2334 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      |++|+|...
T Consensus       233 PtsgLD~~~  241 (659)
T PLN03211        233 PTSGLDATA  241 (659)
T ss_pred             CCCCcCHHH
Confidence            999998643

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.78  E-value=4.7e-19  Score=155.31  Aligned_cols=142  Identities=17%  Similarity=0.116  Sum_probs=99.7

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (275)
                      .+++.+.++..++|++++++|+|||||||+||+|+|++.|+ |+|.+.|.++.. +..+..+++++++......      
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence            45788888888899999999999999999999999999999 999999998864 4567778888876553100      


Q ss_pred             ---HHhcCCCccchHHHHHHHHHHHHH-hhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          141 ---VETGGCPHAAIREDISINLGPLEE-LSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       141 ---~~~~~~~~~~~~~~~~~~~~~L~~-l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                         .......+.--...+...++.|.+ +.........+.. |-|||.|+.+|.+|+ +|.|++|| ||-|+|+..+
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq  192 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ  192 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence               000000000001122222223322 2233334445555 999999999999999 89999999 8889997654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.78  E-value=3e-19  Score=145.54  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      ..++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.           +.++|++|           
T Consensus        13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~-----------   70 (144)
T cd03221          13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ-----------   70 (144)
T ss_pred             ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc-----------
Confidence            34555666666889999999999999999999999999998 99988652           35777765           


Q ss_pred             CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                                                .    |+||+||+++||+|+ +|+++|+| |++++|...
T Consensus        71 --------------------------l----S~G~~~rv~laral~~~p~illlDEP~~~LD~~~  105 (144)
T cd03221          71 --------------------------L----SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES  105 (144)
T ss_pred             --------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence                                      2    999999999999999 99999999 888888643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.78  E-value=1.9e-19  Score=176.45  Aligned_cols=131  Identities=18%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+...           ..+||++|++.       
T Consensus        19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~v~Q~~~~~~~~tv   87 (556)
T PRK11819         19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGYLPQEPQLDPEKTV   87 (556)
T ss_pred             CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecCCCCCCCCcH
Confidence            445556666667889999999999999999999999999998 99887431           35888888752       


Q ss_pred             -HHHHhcCCC---------------ccc---h----------HH---------HHHHHHHHHHHhhccccccccccc-Ch
Q 023913          139 -RAVETGGCP---------------HAA---I----------RE---------DISINLGPLEELSNLFKADLLLCE-SG  179 (275)
Q Consensus       139 -~~~~~~~~~---------------~~~---~----------~~---------~~~~~~~~L~~l~~~~~~d~~~~e-S~  179 (275)
                       +++.++.+.               ...   .          .+         ....+...++.++.. ..++.+.+ |+
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSg  166 (556)
T PRK11819         88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSG  166 (556)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCH
Confidence             122111100               000   0          00         001122344444442 24566666 99


Q ss_pred             hHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       180 G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ||+||++||++|+ +|+++||| |++++|...
T Consensus       167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~  198 (556)
T PRK11819        167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAES  198 (556)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH
Confidence            9999999999999 89999999 899998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.6e-19  Score=175.95  Aligned_cols=132  Identities=18%  Similarity=0.097  Sum_probs=89.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.           ..+||++|++.       
T Consensus        13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv   81 (530)
T PRK15064         13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTV   81 (530)
T ss_pred             CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcH
Confidence            445566666667889999999999999999999999999998 99987642           24677777531       


Q ss_pred             -HHHHhcC---------------CCc------cchH------------HHHHHHHHHHHHhhcccc-ccccccc-ChhHH
Q 023913          139 -RAVETGG---------------CPH------AAIR------------EDISINLGPLEELSNLFK-ADLLLCE-SGGDN  182 (275)
Q Consensus       139 -~~~~~~~---------------~~~------~~~~------------~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~  182 (275)
                       +++.++.               .+.      ....            +....+.+.++.++.... .+..+.+ |+||+
T Consensus        82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~  161 (530)
T PRK15064         82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK  161 (530)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence             1111100               000      0000            001223345666655332 2344556 99999


Q ss_pred             HHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          183 LAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       183 q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ||++||++|+ +|+|+||| |++++|...
T Consensus       162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~  190 (530)
T PRK15064        162 LRVLLAQALFSNPDILLLDEPTNNLDINT  190 (530)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence            9999999999 89999999 999998654

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.78  E-value=1.8e-19  Score=165.55  Aligned_cols=122  Identities=21%  Similarity=0.135  Sum_probs=88.9

Q ss_pred             EEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCC-ccchHHHH
Q 023913           86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI  155 (275)
Q Consensus        86 IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~-~~~~~~~~  155 (275)
                      |+|||||||||||++|+|+++|+ |+|.+.+.++.....  ..+.++|++|++.        +++.++... .....+..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            68999999999999999999998 999999887754332  3467999999852        222221110 01111112


Q ss_pred             HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~  135 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL  135 (325)
T ss_pred             HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence            2344566766666566777777 999999999999999 99999999 899998653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.1e-18  Score=160.62  Aligned_cols=151  Identities=19%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|..   .++.+.+.++....|+.++++|+.|+||||++++|..+++++ |.|.+++.|+.......+++.||.+
T Consensus       266 ~~V~F~y~~---~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V  342 (497)
T COG5265         266 INVSFAYDP---RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV  342 (497)
T ss_pred             EEEEeeccc---cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence            788888877   666666776777789999999999999999999999999998 9999999999877777889999999


Q ss_pred             CchhHHHHH------hcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEERIRAVE------TGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~~~~~~------~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll  198 (275)
                      ||+...++.      -.+.+..+..+..+. ....+..+.  ...+++..++|     |+|++||+++||+++ +|+|++
T Consensus       343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~  422 (497)
T COG5265         343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI  422 (497)
T ss_pred             cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence            999753322      224444443222111 111222221  24577888888     999999999999999 899999


Q ss_pred             Ee-CCCCCCcc
Q 023913          199 ID-VSGGDKIP  208 (275)
Q Consensus       199 lD-~t~g~d~~  208 (275)
                      +| +|+.+|..
T Consensus       423 ~deatsaldt~  433 (497)
T COG5265         423 LDEATSALDTH  433 (497)
T ss_pred             EehhhhHhhhh
Confidence            99 67777753

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.77  E-value=8e-19  Score=144.63  Aligned_cols=99  Identities=23%  Similarity=0.277  Sum_probs=82.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      .++.+.+....+|++++|+|+||||||||+++|+|+++++ |++.+.+.+........+.+.++|++|            
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------   80 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------   80 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence            4555555566889999999999999999999999999998 999998877655444455566777765            


Q ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                                               .    |+||+||++++++++ +|+++++| |++++|..
T Consensus        81 -------------------------l----S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~  114 (157)
T cd00267          81 -------------------------L----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPA  114 (157)
T ss_pred             -------------------------C----CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence                                     2    999999999999999 89999999 88888854

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.77  E-value=1e-18  Score=187.35  Aligned_cols=151  Identities=17%  Similarity=0.087  Sum_probs=108.9

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +.+ ++.+.++...+|+.++|+|++|||||||+++|+|++++.|+|.+++.|+.+.....++++++|+
T Consensus      1221 ~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271      1221 QGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred             EEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEE
Confidence            778888876   434 4445555667799999999999999999999999997459999999999988888999999999


Q ss_pred             CchhHHHH---HhcCCCccc-hHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEEE
Q 023913          134 PEERIRAV---ETGGCPHAA-IREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       134 ~q~~~~~~---~~~~~~~~~-~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlll  199 (275)
                      ||++..+.   ..+..+... ..+.+..+.+  .|..+.  ...+++..+.|     |+||+||++|||||+ +++|+||
T Consensus      1298 pQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271      1298 PQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred             eCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            99984211   001111111 1111211111  112221  12456777766     999999999999999 8999999


Q ss_pred             e-CCCCCCcc
Q 023913          200 D-VSGGDKIP  208 (275)
Q Consensus       200 D-~t~g~d~~  208 (275)
                      | ||+.+|..
T Consensus      1378 DEaTS~lD~~ 1387 (1490)
T TIGR01271      1378 DEPSAHLDPV 1387 (1490)
T ss_pred             eCCcccCCHH
Confidence            9 88888753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.77  E-value=3.1e-19  Score=175.69  Aligned_cols=144  Identities=17%  Similarity=0.070  Sum_probs=94.9

Q ss_pred             CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHH---
Q 023913           64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL---  127 (275)
Q Consensus        64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~---  127 (275)
                      +|+... ++.+. ....+|++++|+|||||||||||++|+|+++|+ |+|.           +.+.++.... ..+.   
T Consensus        82 ~yg~~~~~L~~l-~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~-~~~~~~~  159 (590)
T PRK13409         82 RYGVNGFKLYGL-PIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF-KKLYNGE  159 (590)
T ss_pred             EecCCceeEecC-CcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHH-HHHhccC
Confidence            565543 44444 467789999999999999999999999999998 9986           5555543211 1111   


Q ss_pred             HhccccCchhHHHHHh-cC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          128 MRNGALPEERIRAVET-GG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       128 ~~ig~v~q~~~~~~~~-~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ..+++.+|.......+ .+  ............+.+.++.+......++.+.+ |+||+||++||++|+ +|+++||| |
T Consensus       160 ~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEP  239 (590)
T PRK13409        160 IKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP  239 (590)
T ss_pred             cceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            1245555543211111 00  00000111122344566777666566777777 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       240 ts~LD~~~  247 (590)
T PRK13409        240 TSYLDIRQ  247 (590)
T ss_pred             CCCCCHHH
Confidence            99998653

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.1e-19  Score=175.20  Aligned_cols=136  Identities=16%  Similarity=0.063  Sum_probs=94.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH-HH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-AV  141 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~~  141 (275)
                      +|+++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.           +.+||++|++.. +.
T Consensus       328 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~  396 (530)
T PRK15064        328 GFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDFE  396 (530)
T ss_pred             eeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccCC
Confidence            344455555666667889999999999999999999999999998 99886541           358898887420 00


Q ss_pred             -HhcCCCcc----chHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          142 -ETGGCPHA----AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       142 -~~~~~~~~----~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       ..+...+.    ........+...|+.+... ...+..+.+ |+||+||++||++|+ +|.|+|+| |++++|....
T Consensus       397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~  474 (530)
T PRK15064        397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI  474 (530)
T ss_pred             CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence             00000000    0000112234456666542 345666667 999999999999999 99999999 9999997543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.77  E-value=1.8e-18  Score=143.87  Aligned_cols=139  Identities=14%  Similarity=0.049  Sum_probs=98.4

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHH--HHH--h
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--AVE--T  143 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--~~~--~  143 (275)
                      .++..+++...+|..++|+|.||||||||.++|+|+++|+ |+|.+++....-.+-..+.+.|-++||++..  +..  .
T Consensus        27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i  106 (267)
T COG4167          27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI  106 (267)
T ss_pred             hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence            3666667777889999999999999999999999999999 9999988776543334455678999999741  111  1


Q ss_pred             cC--------CCccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          144 GG--------CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       144 ~~--------~~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      |-        ....+..+....+.+.|..+++... .++.+.. |.||+||+++||||+ +|.|+|.| +.+++|.
T Consensus       107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~  182 (267)
T COG4167         107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM  182 (267)
T ss_pred             hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccH
Confidence            10        0111112223445556666665443 3334444 999999999999998 99999999 6666664

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.7e-18  Score=141.86  Aligned_cols=142  Identities=20%  Similarity=0.175  Sum_probs=103.4

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc-----CCCCChHHHH----Hhcccc
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEFL----MRNGAL  133 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d-----~~~~~~~~~~----~~ig~v  133 (275)
                      +|+.++...++++...+||+.+|+|.+||||||||++|++-+.|+ |.+.+...+     +..+..++.+    ..-||+
T Consensus        15 ~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~V   94 (258)
T COG4107          15 LYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV   94 (258)
T ss_pred             hhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhcccee
Confidence            677888888998889999999999999999999999999999999 999988743     2233333332    247899


Q ss_pred             CchhHHHH---------------HhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERIRAV---------------ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~  195 (275)
                      -|++..-+               ..+...+..++   +.+.+.|+++... ...|..+.. |+||+||+.|||.|. .|.
T Consensus        95 hQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR---~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~Pr  171 (258)
T COG4107          95 HQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIR---AEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR  171 (258)
T ss_pred             ecCccccceeeeccCCccchhHHhhhhhhhhhHH---HHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCc
Confidence            98873211               12222222222   2334566665443 245555555 999999999999999 899


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      ++++| ||.|+|..
T Consensus       172 LvfMDEPTGGLDVS  185 (258)
T COG4107         172 LVFMDEPTGGLDVS  185 (258)
T ss_pred             eEEecCCCCCcchh
Confidence            99999 88888864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.7e-19  Score=176.90  Aligned_cols=145  Identities=15%  Similarity=0.033  Sum_probs=94.1

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc----CCCCChHHHHHhccccCchhHH
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGEFLMRNGALPEERIR  139 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d----~~~~~~~~~~~~ig~v~q~~~~  139 (275)
                      |+++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |.|.+.+..    +.+.........++|+++....
T Consensus        11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~   90 (638)
T PRK10636         11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDRE   90 (638)
T ss_pred             eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHH
Confidence            44556666666777889999999999999999999999999998 999876542    0110100012235555553211


Q ss_pred             HHHhcC-------CCc----cchH---------HHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceE
Q 023913          140 AVETGG-------CPH----AAIR---------EDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       140 ~~~~~~-------~~~----~~~~---------~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~v  196 (275)
                      +..+..       ...    ....         .....+...|+.++.. ...+..+.+ |+||+||++||++|+ +|+|
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~l  170 (638)
T PRK10636         91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL  170 (638)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCE
Confidence            110000       000    0000         0112334466666654 345667777 999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +||| ||+++|...
T Consensus       171 LLLDEPtn~LD~~~  184 (638)
T PRK10636        171 LLLDEPTNHLDLDA  184 (638)
T ss_pred             EEEcCCCCcCCHHH
Confidence            9999 999998654

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=172.81  Aligned_cols=140  Identities=16%  Similarity=0.086  Sum_probs=102.3

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~------  138 (275)
                      .+.+.++...+|++++|+|+||||||||+++|+|+++|+ |++.+++.++......++    ++.++|++|++.      
T Consensus        23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t  102 (648)
T PRK10535         23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT  102 (648)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCC
Confidence            455555566889999999999999999999999999998 999999988776554433    356999999862      


Q ss_pred             --HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.+.... .....+....+.+.++.+......+..+.+ |+||+||+.|||+|+ +|+++|+| |+.++|...
T Consensus       103 v~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s  179 (648)
T PRK10535        103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS  179 (648)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence              111111000 011112223445566666665556666667 999999999999999 89999999 899998654

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.77  E-value=1.2e-18  Score=170.92  Aligned_cols=133  Identities=14%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-H----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-I----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~----  138 (275)
                      |+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+ +.+          ..+||++|++ .    
T Consensus       334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~----------~~i~~v~q~~~~~~~~  402 (556)
T PRK11819        334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET----------VKLAYVDQSRDALDPN  402 (556)
T ss_pred             ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc----------eEEEEEeCchhhcCCC
Confidence            44455666666667889999999999999999999999999998 99976 321          1488999874 1    


Q ss_pred             ----HHHHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.+.. ...............++.+.... ..+..+.+ |+||+||++||++++ +|.++||| |++++|...
T Consensus       403 ~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  480 (556)
T PRK11819        403 KTVWEEISGGL-DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET  480 (556)
T ss_pred             CCHHHHHHhhc-ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence                1111111 00000000111233566665542 34666677 999999999999999 99999999 999999754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.76  E-value=1.2e-18  Score=170.70  Aligned_cols=133  Identities=12%  Similarity=0.083  Sum_probs=92.8

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |+++.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+ +.+          ..+||++|++.     
T Consensus       332 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~----------~~i~~v~q~~~~~~~~  400 (552)
T TIGR03719       332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET----------VKLAYVDQSRDALDPN  400 (552)
T ss_pred             ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc----------eEEEEEeCCccccCCC
Confidence            44455566666667889999999999999999999999999998 99976 322          15889888741     


Q ss_pred             ----HHHHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++..+.... ............++.+.... ..+..+.+ |+||+||++||++|+ +|+++|+| |++++|...
T Consensus       401 ~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~  478 (552)
T TIGR03719       401 KTVWEEISGGLDII-QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET  478 (552)
T ss_pred             CcHHHHHHhhcccc-ccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence                1111111000 00000111234566665532 34666667 999999999999999 99999999 999999754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.76  E-value=5.1e-19  Score=173.30  Aligned_cols=139  Identities=16%  Similarity=0.104  Sum_probs=91.3

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      +.++.|++   ++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |.|.+.+           ...+||++
T Consensus         9 nls~~~~~---~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v~   74 (552)
T TIGR03719         9 RVSKVVPP---KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYLP   74 (552)
T ss_pred             eEEEecCC---CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEe
Confidence            34444542   344555666667889999999999999999999999999998 9987642           13588888


Q ss_pred             chhH--------HHHHhcCCCc---------------cchHH---------H-------------HHHHHHHHHHhhccc
Q 023913          135 EERI--------RAVETGGCPH---------------AAIRE---------D-------------ISINLGPLEELSNLF  169 (275)
Q Consensus       135 q~~~--------~~~~~~~~~~---------------~~~~~---------~-------------~~~~~~~L~~l~~~~  169 (275)
                      |++.        +++.++....               ....+         .             ...+.+.++.+... 
T Consensus        75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-  153 (552)
T TIGR03719        75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-  153 (552)
T ss_pred             ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-
Confidence            8752        1221111000               00000         0             01112233333332 


Q ss_pred             cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          170 KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       170 ~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+..+.+ |+||+||++||++|+ +|+++||| |++++|...
T Consensus       154 ~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~  196 (552)
T TIGR03719       154 PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES  196 (552)
T ss_pred             cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH
Confidence            23555666 999999999999999 89999999 899988654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.8e-18  Score=144.18  Aligned_cols=136  Identities=17%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh--------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER--------  137 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~--------  137 (275)
                      ++....+.++...+|+++.|.|||||||||||++|+|+++|+ |+|.+.+..+....+ ...+..-|+--.+        
T Consensus        14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yLGH~~giK~eLTa   92 (209)
T COG4133          14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYLGHQPGIKTELTA   92 (209)
T ss_pred             cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHhhccccccchhhH
Confidence            343444444556779999999999999999999999999999 999998877654332 2233333332221        


Q ss_pred             HHHHH----hcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          138 IRAVE----TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       138 ~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .++..    +.++      .....+.++++.+++....|..+.. |.||++|+++||-++ .++++||| |++.+|...
T Consensus        93 ~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g  165 (209)
T COG4133          93 LENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG  165 (209)
T ss_pred             HHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHH
Confidence            12211    1121      0112334578888888888888888 999999999999988 89999999 888888654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.76  E-value=3.4e-18  Score=156.81  Aligned_cols=139  Identities=20%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChH---HHHHhccccCchhH-------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~-------  138 (275)
                      +++...++...+|+.++|+|.+|||||||-.+|+++++++|.|.+.+.++...+..   .+++++-+|||||.       
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm  380 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM  380 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence            45556666678899999999999999999999999999999999999998866543   45678999999983       


Q ss_pred             ---HHHHhcCC---CccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          139 ---RAVETGGC---PHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 ---~~~~~~~~---~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                         +.+.-+..   +..+..+...++.++|+++++.. ..++++-| ||||+||++||||++ .|.+++|| ||+.+|.
T Consensus       381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~  459 (534)
T COG4172         381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR  459 (534)
T ss_pred             CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence               12222222   22334455567778899887765 46788888 999999999999999 99999999 8888774

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.76  E-value=1.5e-18  Score=172.58  Aligned_cols=133  Identities=16%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |+++.++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+ +..+          .+||++|+..     
T Consensus       329 ~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~~~  397 (635)
T PRK11147        329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELDPE  397 (635)
T ss_pred             ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccCCC
Confidence            44455556666667889999999999999999999999999998 99876 4321          4788888631     


Q ss_pred             ----HHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++... +...........+...|..+... ...+..+.+ |+||+||++||++|+ +|.++||| ||+++|...
T Consensus       398 ~tv~e~l~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~  475 (635)
T PRK11147        398 KTVMDNLAEG-KQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET  475 (635)
T ss_pred             CCHHHHHHhh-cccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence                122211 11110000112234456555443 234566666 999999999999999 89999999 999998754

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=2.7e-18  Score=146.07  Aligned_cols=137  Identities=16%  Similarity=0.060  Sum_probs=98.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCC
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~  146 (275)
                      .+++...+....+|+++.|+|.||||||||+|.|+|.+.|+ |+|.+++.|+.......+...++-|+|+|    ..+-|
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp----~~gt~   94 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDP----LAGTA   94 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcch----hhCCc
Confidence            33444444556779999999999999999999999999999 99999999998887777777788899987    23334


Q ss_pred             CccchHHHHH---------------------HHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913          147 PHAAIREDIS---------------------INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV  201 (275)
Q Consensus       147 ~~~~~~~~~~---------------------~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~  201 (275)
                      +..++.+++.                     ...+.+..+  +.....+..+.- ||||||.++++.|.+ .|+|++||+
T Consensus        95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE  174 (263)
T COG1101          95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE  174 (263)
T ss_pred             ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence            4444333221                     112223332  222333444444 999999999999988 899999995


Q ss_pred             -CCCCCcc
Q 023913          202 -SGGDKIP  208 (275)
Q Consensus       202 -t~g~d~~  208 (275)
                       |+.+|+.
T Consensus       175 HTAALDPk  182 (263)
T COG1101         175 HTAALDPK  182 (263)
T ss_pred             hhhcCCcc
Confidence             6667754

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.76  E-value=1.7e-18  Score=152.39  Aligned_cols=112  Identities=19%  Similarity=0.082  Sum_probs=88.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      .++.++++...+|++++|+|.+|||||||-++|+|+++|+ |+|.+.+.++......+                      
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~----------------------   84 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEE----------------------   84 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhH----------------------
Confidence            5666777777889999999999999999999999999999 99999998865433111                      


Q ss_pred             ccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                            ....+.+.|+.++... ...+...| ||||+||+.|||||+ +|.++++| |++.+|..
T Consensus        85 ------~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS  143 (268)
T COG4608          85 ------RRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS  143 (268)
T ss_pred             ------HHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh
Confidence                  1123344566655433 45667777 999999999999999 99999999 77888764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.76  E-value=1.6e-18  Score=154.87  Aligned_cols=135  Identities=15%  Similarity=-0.018  Sum_probs=85.3

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcC-
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGG-  145 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~-  145 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.. ...     ....++.++.. .+++.... 
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~-~~~-----~~~~~~~~~~tv~enl~~~~~  111 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV-SVI-----AISAGLSGQLTGIENIEFKML  111 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE-eEE-----ecccCCCCCCcHHHHHHHHHH
Confidence            3444555666789999999999999999999999999998 999876631 100     00112212111 12221110 


Q ss_pred             CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .......+........++.+......+..+.+ |+||+||++||++++ +|+++|+| |++++|...
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~  178 (264)
T PRK13546        112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTF  178 (264)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHH
Confidence            00111111112222344444444445556666 999999999999999 89999999 899998643

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=8.2e-19  Score=147.18  Aligned_cols=145  Identities=17%  Similarity=0.021  Sum_probs=112.9

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe-ccCCCCChHHHHH-hccccCchhH--
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERI--  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~-~d~~~~~~~~~~~-~ig~v~q~~~--  138 (275)
                      +|++.+++.+.++...+|+.-+|+|||||||||++..|+|..+|+ |++.+.+ .|+..++..++.+ .||--||.|.  
T Consensus        14 sF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf   93 (249)
T COG4674          14 SFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF   93 (249)
T ss_pred             EEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence            677899999999999999999999999999999999999999999 9999999 7888777666554 4787888763  


Q ss_pred             ------HHHHhcCCCccchH---------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          139 ------RAVETGGCPHAAIR---------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       139 ------~~~~~~~~~~~~~~---------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                            +|+++..+....+.         +...++.+.|...++....+..... |.||+|++.|...++ +|.++++| 
T Consensus        94 e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDE  173 (249)
T COG4674          94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDE  173 (249)
T ss_pred             hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecC
Confidence                  44444433333221         1223455566666666666666666 999999999998888 89999999 


Q ss_pred             CCCCCCcc
Q 023913          201 VSGGDKIP  208 (275)
Q Consensus       201 ~t~g~d~~  208 (275)
                      |.+|+...
T Consensus       174 PvAGMTd~  181 (249)
T COG4674         174 PVAGMTDA  181 (249)
T ss_pred             ccCCCcHH
Confidence            88887543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.2e-18  Score=173.36  Aligned_cols=135  Identities=14%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE  142 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~  142 (275)
                      .|+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+...           .++||++|+......
T Consensus       321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~l~  389 (638)
T PRK10636        321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEFLR  389 (638)
T ss_pred             EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhhCC
Confidence            344455566666667889999999999999999999999999998 99877421           258888886321100


Q ss_pred             h--cCCCcc---chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          143 T--GGCPHA---AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       143 ~--~~~~~~---~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .  ....+.   ........+...|..+.... ..+..+.+ |+||+||++||++|+ +|.|+||| ||+++|...
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~  465 (638)
T PRK10636        390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM  465 (638)
T ss_pred             ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            0  000000   00011123344666665532 34556666 999999999999999 89999999 999998754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.75  E-value=4.2e-18  Score=153.57  Aligned_cols=128  Identities=15%  Similarity=0.085  Sum_probs=82.4

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (275)
                      +.++.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.+             .++|++|++.       +
T Consensus        50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~e  116 (282)
T cd03291          50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKE  116 (282)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCcccccccCHHH
Confidence            44555666666889999999999999999999999999998 9988754             2677777652       1


Q ss_pred             HHHhcCCCccch--HHHHHH--HHHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAI--REDISI--NLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~--~~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.++ +.....  .+.+..  ....+..+....  ..+....+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus       117 nl~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~  194 (282)
T cd03291         117 NIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT  194 (282)
T ss_pred             Hhhcc-cccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence            11111 110000  000000  011111111000  11112234 999999999999999 89999999 899998643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.75  E-value=3.4e-18  Score=149.82  Aligned_cols=184  Identities=25%  Similarity=0.273  Sum_probs=121.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchH-----
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR-----  152 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~-----  152 (275)
                      .+..++||+||+|||||||+..|...+... .+|.+...|+...      ..-|.+..|.+++......+...++     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp------~tGGAlLGDRiRM~~~~~d~~vfIRS~atR  100 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP------FTGGALLGDRIRMQELSRDPGVFIRSMATR  100 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG------CC---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC------CCCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence            457899999999999999999999988766 6899999888642      2345666677776665544443321     


Q ss_pred             ----HHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCC
Q 023913          153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (275)
Q Consensus       153 ----~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl  228 (275)
                          .....+.+.+.-+ ...++|.+++|+.|.-|-..-...++|..++++=|..|++.|..+...++.||++|+||+|+
T Consensus       101 G~lGGls~~t~~~v~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~  179 (266)
T PF03308_consen  101 GSLGGLSRATRDAVRLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADR  179 (266)
T ss_dssp             SSHHHHHHHHHHHHHHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SH
T ss_pred             CCCCCccHhHHHHHHHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCCh
Confidence                1112223333322 44579999999888777765556677999999999999999998888899999999999996


Q ss_pred             CccchhhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913          229 ASAIGADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .... .....++..+....+     ..||+.+|+.+++|++++++.+
T Consensus       180 ~gA~-~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i  225 (266)
T PF03308_consen  180 PGAD-RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAI  225 (266)
T ss_dssp             HHHH-HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHH
Confidence            5441 233444555543332     3689999999999999998754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PLN03073 ABC transporter F family; Provisional

Probab=99.75  E-value=1.3e-18  Score=174.43  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=94.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++   ...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+..           ..++||+
T Consensus       512 ~~ls~~y~~---~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv  577 (718)
T PLN03073        512 SDASFGYPG---GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVF  577 (718)
T ss_pred             EeeEEEeCC---CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEE
Confidence            344455543   333555666667889999999999999999999999999998 9987632           1358888


Q ss_pred             CchhHH------HHH--h-cCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          134 PEERIR------AVE--T-GGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       134 ~q~~~~------~~~--~-~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +|+...      +..  + ...+...    ...+...|+.+.... ..+..+.+ |+||+||++||++|+ +|.++||| 
T Consensus       578 ~Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE  653 (718)
T PLN03073        578 SQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE  653 (718)
T ss_pred             eccccccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            886421      100  0 0001100    122344666665542 34555666 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      ||+++|...
T Consensus       654 PT~~LD~~s  662 (718)
T PLN03073        654 PSNHLDLDA  662 (718)
T ss_pred             CCCCCCHHH
Confidence            999999754

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.75  E-value=4.4e-18  Score=168.70  Aligned_cols=139  Identities=19%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      ++..+.+.+....+|++++|+|||||||||||++|+|..++    +|+|.+++.++.   ...+++.+||++|++.    
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence            34455566667788999999999999999999999998876    388998887653   3456778999999863    


Q ss_pred             ----HHHHhcCCCc----cchHHHHHHHHHHHHHhhcccccccccc------c-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          139 ----RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLC------E-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       139 ----~~~~~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~d~~~~------e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                          +++.++....    ....+....+.+.++.++.....+..+.      . |+||+||+.||++|+ +|+|+++| |
T Consensus       114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence                2232221111    1112223345567777766665666654      3 999999999999999 99999999 9


Q ss_pred             CCCCCcc
Q 023913          202 SGGDKIP  208 (275)
Q Consensus       202 t~g~d~~  208 (275)
                      ++|+|..
T Consensus       194 tsgLD~~  200 (617)
T TIGR00955       194 TSGLDSF  200 (617)
T ss_pred             CcchhHH
Confidence            9998864

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.75  E-value=3.1e-18  Score=164.40  Aligned_cols=134  Identities=15%  Similarity=-0.012  Sum_probs=89.0

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcCC-
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC-  146 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~-  146 (275)
                      ++.+.++...+|++++|+|+|||||||||++|+|+++|+ |+|.+.+.+.. ..     ...++.++.. .+++.+... 
T Consensus        39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-i~-----~~~~l~~~lTV~EnL~l~~~~  112 (549)
T PRK13545         39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-IA-----ISSGLNGQLTGIENIELKGLM  112 (549)
T ss_pred             EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-EE-----eccccCCCCcHHHHHHhhhhh
Confidence            455565666889999999999999999999999999998 99988765411 00     0112222212 122222111 


Q ss_pred             CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ......+....+...++.+......+..+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus       113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s  178 (549)
T PRK13545        113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF  178 (549)
T ss_pred             cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence            1111111122233455655555555666666 999999999999999 99999999 899998753

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.75  E-value=3.5e-18  Score=170.52  Aligned_cols=137  Identities=14%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.||+   ++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |++.+..           ++.++|+
T Consensus       455 ~nv~~~~~~---~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v  520 (659)
T TIGR00954       455 ENIPLVTPN---GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYV  520 (659)
T ss_pred             EeeEEECCC---CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEE
Confidence            566676765   445565666667889999999999999999999999999988 8876531           3468999


Q ss_pred             CchhH-------HHHHhcCCC-----ccchHHHHHHHHHHHHHhhcccc------cccc---ccc-ChhHHHHHHHHHHh
Q 023913          134 PEERI-------RAVETGGCP-----HAAIREDISINLGPLEELSNLFK------ADLL---LCE-SGGDNLAANFSREL  191 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~L~~l~~~~~------~d~~---~~e-S~G~~q~~~laral  191 (275)
                      ||++.       +++..+...     .....   ..+.+.++.+.....      ++..   ..+ |+||+||++|||++
T Consensus       521 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal  597 (659)
T TIGR00954       521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSD---KDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF  597 (659)
T ss_pred             CCCCCCCCcCHHHHHhcCCChhhhhccCCCH---HHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence            99862       233222110     00011   112233433332221      1111   123 99999999999999


Q ss_pred             c-CceEEEEe-CCCCCCcc
Q 023913          192 A-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       192 ~-~~~vlllD-~t~g~d~~  208 (275)
                      + +|+++|+| |++++|..
T Consensus       598 ~~~p~illLDEpts~LD~~  616 (659)
T TIGR00954       598 YHKPQFAILDECTSAVSVD  616 (659)
T ss_pred             HcCCCEEEEeCCccCCCHH
Confidence            9 89999999 89898864

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=1.2e-18  Score=171.58  Aligned_cols=122  Identities=17%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~  141 (275)
                      +.+.++...+|++++|+|+||||||||+++|+|+++|+ |+|.+.             .+++|+||+..        +++
T Consensus       355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l  421 (590)
T PRK13409        355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLL  421 (590)
T ss_pred             EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHH
Confidence            33344445779999999999999999999999999998 988764             14788888742        111


Q ss_pred             HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .... ....   ......+.|+.+......+..+.+ |+||+||++||++|+ +|+|+||| |++++|...
T Consensus       422 ~~~~-~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~  488 (590)
T PRK13409        422 RSIT-DDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ  488 (590)
T ss_pred             HHHh-hhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence            1110 0000   001234466666665556777777 999999999999999 89999999 999999754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.73  E-value=9.2e-18  Score=145.40  Aligned_cols=130  Identities=15%  Similarity=-0.042  Sum_probs=78.8

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-EEeccCCCCChHHHHHhccccCchh-HHHHHhcCC-
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGC-  146 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~-  146 (275)
                      +.+.++...+|++++|+||||||||||+++|+|+++|+ |+|. +.+.... ..     ....+.+.-. .+++.+... 
T Consensus         3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~~   76 (213)
T PRK15177          3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMASL   76 (213)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHHH
Confidence            34455556779999999999999999999999999998 9986 4433221 10     0111212111 122222110 


Q ss_pred             CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ......+....   .+..+......+..+.+ |+||+||+++||+++ +|+++|+| |++++|...
T Consensus        77 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~  139 (213)
T PRK15177         77 YGLDGDEFSHF---CYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT  139 (213)
T ss_pred             cCCCHHHHHHH---HHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence            00111111111   11122223334555666 999999999999999 99999999 677777543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.73  E-value=9.8e-18  Score=162.23  Aligned_cols=134  Identities=18%  Similarity=0.126  Sum_probs=90.5

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHH--
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA--  140 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~--  140 (275)
                      .|+++....+.++...+|+++||+|+|||||||||++|+|.+.|+ |.|....+           .+++|++|++...  
T Consensus        12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~~~~~~~   80 (530)
T COG0488          12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQEPPLDPE   80 (530)
T ss_pred             eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCCCCcCCC
Confidence            344676777777778889999999999999999999999999998 98876543           1356666654211  


Q ss_pred             ------HHhcCCCccchH------------------HH-------------HHHHHHHHHHhhccccccccccc-ChhHH
Q 023913          141 ------VETGGCPHAAIR------------------ED-------------ISINLGPLEELSNLFKADLLLCE-SGGDN  182 (275)
Q Consensus       141 ------~~~~~~~~~~~~------------------~~-------------~~~~~~~L~~l~~~~~~d~~~~e-S~G~~  182 (275)
                            +..+........                  ..             ...+...|..++.... +..+.+ |||++
T Consensus        81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r  159 (530)
T COG0488          81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWR  159 (530)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHH
Confidence                  111000000000                  00             0112223444433333 667777 99999


Q ss_pred             HHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          183 LAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       183 q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .|++||++|. +|+++||| ||+.+|...
T Consensus       160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~  188 (530)
T COG0488         160 RRVALARALLEEPDLLLLDEPTNHLDLES  188 (530)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence            9999999999 89999999 999998754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.73  E-value=9.8e-18  Score=178.65  Aligned_cols=138  Identities=14%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC---CC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      +.++.+.+....+|++++|+|||||||||||++|+|.++   ++ |+|.+++.++.    ..+++.+||++|++.     
T Consensus       776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~  851 (1394)
T TIGR00956       776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTS  851 (1394)
T ss_pred             cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCC
Confidence            345556666678899999999999999999999999987   67 99999887763    245678999999752     


Q ss_pred             ---HHHHhcCC---Cc-cchHHHHHHHHHHHHHhhcccccccccc----c-ChhHHHHHHHHHHhc-Cce-EEEEe-CCC
Q 023913          139 ---RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI-IYIID-VSG  203 (275)
Q Consensus       139 ---~~~~~~~~---~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~----e-S~G~~q~~~laral~-~~~-vlllD-~t~  203 (275)
                         +++.+...   +. ....+....+.+.++.+......+..+.    + |+||+||++||++|+ +|+ |++|| ||+
T Consensus       852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTs  931 (1394)
T TIGR00956       852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS  931 (1394)
T ss_pred             CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCC
Confidence               22222111   11 1111222344557777766666677765    4 999999999999999 895 99999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      |+|...
T Consensus       932 gLD~~~  937 (1394)
T TIGR00956       932 GLDSQT  937 (1394)
T ss_pred             CCCHHH
Confidence            998643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.1e-17  Score=140.83  Aligned_cols=140  Identities=16%  Similarity=0.034  Sum_probs=102.0

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc--CCC-CcEEEEeccCCCCChHHHHH-hccccCchhHH-----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR-----  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l--~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~-----  139 (275)
                      +.+...+....+||+.+|+||||||||||.+.|+|.-  ..+ |+|.+.+.|+....+.++.+ .+..-+|.|.+     
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~   97 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVT   97 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCee
Confidence            5555666677889999999999999999999999963  457 99999999999888766655 46667888732     


Q ss_pred             ---HHHh--cC---CCccchHHHHHHHHHHHHHhhccc-cccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          140 ---AVET--GG---CPHAAIREDISINLGPLEELSNLF-KADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       140 ---~~~~--~~---~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                         ++..  +.   .... ..+......+.++.+.... ..++.+.+  |||+++|..|+..++ +|+++||| |-+|+|
T Consensus        98 ~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD  176 (251)
T COG0396          98 NSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD  176 (251)
T ss_pred             HHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence               1111  10   0001 1122233444555555444 56777777  999999999999887 99999999 788998


Q ss_pred             ccc
Q 023913          207 IPR  209 (275)
Q Consensus       207 ~~~  209 (275)
                      +.+
T Consensus       177 Ida  179 (251)
T COG0396         177 IDA  179 (251)
T ss_pred             HHH
Confidence            754

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.72  E-value=1.4e-17  Score=170.84  Aligned_cols=179  Identities=16%  Similarity=0.056  Sum_probs=129.2

Q ss_pred             CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHH
Q 023913           64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRA  140 (275)
Q Consensus        64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~  140 (275)
                      .|+.+. |+.+.+.-.++||++|++|+|||||||++++|.|..+|+ |++.+.+.++.... ..+.++.+||+||.....
T Consensus       573 ~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~  652 (885)
T KOG0059|consen  573 VYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW  652 (885)
T ss_pred             eecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhh
Confidence            444454 666666677889999999999999999999999999999 99999888887543 345778899999997655


Q ss_pred             HHhcCCCccchH--------HHH-HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          141 VETGGCPHAAIR--------EDI-SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       141 ~~~~~~~~~~~~--------~~~-~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      ..+++.+++.+.        .++ ..+...++.+.+.+..+..+.. |+|+++|+.+|.+++ +|++++|| |++|+|+.
T Consensus       653 ~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~  732 (885)
T KOG0059|consen  653 EELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK  732 (885)
T ss_pred             hhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence            555554444321        122 2344567777777777777666 999999999999999 89999999 89999986


Q ss_pred             cccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcC
Q 023913          209 RKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMR  247 (275)
Q Consensus       209 ~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~  247 (275)
                      .+..      ...+....||++.     +..++.|.+..++.-+.
T Consensus       733 arr~lW~ii~~~~k~g~aiiLTS-----HsMeE~EaLCtR~aImv  772 (885)
T KOG0059|consen  733 ARRHLWDIIARLRKNGKAIILTS-----HSMEEAEALCTRTAIMV  772 (885)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHHhhhhheee
Confidence            5431      1122222677764     33355666666654443

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.72  E-value=1.8e-17  Score=139.52  Aligned_cols=109  Identities=17%  Similarity=0.044  Sum_probs=77.4

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~  149 (275)
                      ++.+.++...+|++++|+|||||||||||+++++   ..|++.+.+... .    ..++.++|++|              
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~----~~~~~~~~~~q--------------   67 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-K----FSRNKLIFIDQ--------------   67 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-c----cccccEEEEhH--------------
Confidence            4444555567799999999999999999999863   348887654321 1    11234667655              


Q ss_pred             chHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C--ceEEEEe-CCCCCCccc
Q 023913          150 AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~--~~vlllD-~t~g~d~~~  209 (275)
                               .+.++.+.... ..+..+.+ |+||+||+++|++++ +  |+++|+| |++++|...
T Consensus        68 ---------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~  124 (176)
T cd03238          68 ---------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD  124 (176)
T ss_pred             ---------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence                     12455554433 24555555 999999999999999 8  9999999 888888654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.72  E-value=2e-17  Score=172.18  Aligned_cols=151  Identities=18%  Similarity=0.146  Sum_probs=113.8

Q ss_pred             ccccccCCCCCCCCCCcccccc-ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRN-FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+..+.|..   +-+.+++..+ ...+||.|||+|+.|||||||+++|.++..|. |+|.+++.|+.+..-.++|+++++
T Consensus      1142 ~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1142 EDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred             EEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence            566666666   4455555554 55679999999999999999999999999988 999999999999999999999999


Q ss_pred             cCchhHHHH---HhcCCCccchHH-HHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEEE
Q 023913          133 LPEERIRAV---ETGGCPHAAIRE-DISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       133 v~q~~~~~~---~~~~~~~~~~~~-~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vll  198 (275)
                      +||+|..+.   ..+.-|++...+ ++..+++  .|..+.  ...++|..+.|     |.||||.+++||||+ +.+|++
T Consensus      1219 IPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred             eCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence            999986432   234444443321 2222222  233322  23457777877     999999999999999 899999


Q ss_pred             Ee-CCCCCCcc
Q 023913          199 ID-VSGGDKIP  208 (275)
Q Consensus       199 lD-~t~g~d~~  208 (275)
                      +| +|+..|..
T Consensus      1299 LDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1299 LDEATASVDPE 1309 (1381)
T ss_pred             EecccccCChH
Confidence            99 77777754

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.71  E-value=9.4e-17  Score=142.63  Aligned_cols=185  Identities=22%  Similarity=0.218  Sum_probs=134.5

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHH--
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE--  153 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~--  153 (275)
                      ...+-.++||+|++|||||||+..|...+... -+|+++..|++..      ..-|.+..+..+|..+...+...++.  
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp------~TGGsiLGDRiRM~~~~~~~~vFiRs~~  120 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP------FTGGSILGDRIRMQRLAVDPGVFIRSSP  120 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC------CCCccccccHhhHHhhccCCCeEEeecC
Confidence            34456799999999999999999999988777 4699999998752      23466667777777665444433211  


Q ss_pred             -------HHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecC
Q 023913          154 -------DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKT  226 (275)
Q Consensus       154 -------~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~  226 (275)
                             .-....+.+.-+ ...++|.+++|+.|.-|-..-...++|-.++++=|..|++.|..+..+++++|++|+||.
T Consensus       121 srG~lGGlS~at~~~i~~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKa  199 (323)
T COG1703         121 SRGTLGGLSRATREAIKLL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKA  199 (323)
T ss_pred             CCccchhhhHHHHHHHHHH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEecc
Confidence                   112223333333 456899999998888887665556778889999999999999988889999999999999


Q ss_pred             CCCccchhhHHHHHHHHHhcC-------CCCCEEEEEecCCcCHHHHhcc
Q 023913          227 DLASAIGADLAVMERDALRMR-------DGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       227 Dl~~~~~~~~~~~~~~i~~~~-------~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      |+-... .....+...++...       ...|++.+|+..|+|+++|++.
T Consensus       200 D~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~a  248 (323)
T COG1703         200 DRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDA  248 (323)
T ss_pred             ChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHH
Confidence            965442 12223333333331       2468999999999999999874

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.71  E-value=8.6e-18  Score=167.16  Aligned_cols=143  Identities=18%  Similarity=0.061  Sum_probs=87.5

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC-CCCChHHHHHhccccCchhH----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~-~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      |+++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+... ...........+++++|...    
T Consensus        13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~   92 (635)
T PRK11147         13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE   92 (635)
T ss_pred             eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence            33455555666667889999999999999999999999999998 9998764210 00000000111233333210    


Q ss_pred             -------HHHHhc---CCC----ccc----hH---------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHH
Q 023913          139 -------RAVETG---GCP----HAA----IR---------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE  190 (275)
Q Consensus       139 -------~~~~~~---~~~----~~~----~~---------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~lara  190 (275)
                             .+..+.   ...    ...    ..         .....+...++.++..  .++.+.+ |+||+||++||++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAra  170 (635)
T PRK11147         93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRA  170 (635)
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHH
Confidence                   000000   000    000    00         0012233455555543  3566666 9999999999999


Q ss_pred             hc-CceEEEEe-CCCCCCccc
Q 023913          191 LA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       191 l~-~~~vlllD-~t~g~d~~~  209 (275)
                      |+ +|+|+||| |++++|...
T Consensus       171 L~~~P~lLLLDEPt~~LD~~~  191 (635)
T PRK11147        171 LVSNPDVLLLDEPTNHLDIET  191 (635)
T ss_pred             HhcCCCEEEEcCCCCccCHHH
Confidence            99 89999999 999998754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=5.1e-17  Score=131.34  Aligned_cols=147  Identities=14%  Similarity=0.050  Sum_probs=106.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCChHHHHHhc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMRN  130 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~~~~~~~~i  130 (275)
                      +++++..+|    +..+-+.++...+||++-|+||+|||||||+.-+.|.+.++    |++.+.+.++....  .-.|.+
T Consensus         6 ~nvsl~l~g----~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qRq~   79 (213)
T COG4136           6 KNVSLRLPG----SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQRQI   79 (213)
T ss_pred             eeeeecCCC----ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhhhe
Confidence            445555555    44455677778889999999999999999999999998863    88888887775443  234679


Q ss_pred             cccCchhHHHHHhcCCCcc------chH--HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          131 GALPEERIRAVETGGCPHA------AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       131 g~v~q~~~~~~~~~~~~~~------~~~--~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      |+++|++..+..++...+.      +++  .....+..+|++.++...++.-... ||||+-|+++.|+|+ .|+.+++|
T Consensus        80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD  159 (213)
T COG4136          80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD  159 (213)
T ss_pred             eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence            9999998655444332222      122  2223345578877776666665555 999999999999998 99999999


Q ss_pred             -CCCCCCc
Q 023913          201 -VSGGDKI  207 (275)
Q Consensus       201 -~t~g~d~  207 (275)
                       |.+.+|.
T Consensus       160 EPFS~LD~  167 (213)
T COG4136         160 EPFSRLDV  167 (213)
T ss_pred             CchhHHHH
Confidence             6666654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.69  E-value=5.3e-17  Score=174.33  Aligned_cols=138  Identities=18%  Similarity=0.100  Sum_probs=95.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++. .+...+.+.++..++|+.++|+|++|||||||+++|+|.++|+ |++..            +++.++|+
T Consensus       618 ~~vsF~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~------------~~~~Iayv  684 (1495)
T PLN03232        618 KNGYFSWDSK-TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYV  684 (1495)
T ss_pred             EeeEEEcCCC-CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE------------ecCcEEEE
Confidence            6677888751 0123445555566789999999999999999999999999998 77642            23578999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHH-Hhh-ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLE-ELS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~-~l~-~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      +|++.       +|+.++. +. . .+....+.+  .+. .+. ...+.+..++|     ||||+||++||||+. +|+|
T Consensus       685 ~Q~p~Lf~gTIreNI~fg~-~~-~-~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I  761 (1495)
T PLN03232        685 PQVSWIFNATVRENILFGS-DF-E-SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI  761 (1495)
T ss_pred             cCccccccccHHHHhhcCC-cc-C-HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence            99973       3444442 22 1 122222211  111 121 23456677777     999999999999999 8999


Q ss_pred             EEEe-CCCCCCcc
Q 023913          197 YIID-VSGGDKIP  208 (275)
Q Consensus       197 lllD-~t~g~d~~  208 (275)
                      +||| |++++|..
T Consensus       762 lLLDEptSaLD~~  774 (1495)
T PLN03232        762 YIFDDPLSALDAH  774 (1495)
T ss_pred             EEEcCCccccCHH
Confidence            9999 88888853

>PLN03140 ABC transporter G family member; Provisional

Probab=99.68  E-value=9.9e-17  Score=171.07  Aligned_cols=138  Identities=15%  Similarity=0.054  Sum_probs=97.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +++.+.+....+|++++|+|||||||||||++|+|..++  . |+|.+.+.+..   ...+++.+||++|++.       
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV  970 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV  970 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence            455566666788999999999999999999999998764  4 88988776542   2345567999999852       


Q ss_pred             -HHHHhcC---CC-ccchHHHHHHHHHHHHHhhcccccccccc-----c-ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 -RAVETGG---CP-HAAIREDISINLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 -~~~~~~~---~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~-----e-S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                       +++.+..   .+ .....+....+.+.++.+.+....+..+.     . |+||+||+.||++|+ +|+|+++| ||+|+
T Consensus       971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140        971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence             2222211   11 11112222334556666666555566552     3 999999999999999 99999999 99999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus      1051 D~~~ 1054 (1470)
T PLN03140       1051 DARA 1054 (1470)
T ss_pred             CHHH
Confidence            8643

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=1.1e-16  Score=138.70  Aligned_cols=129  Identities=16%  Similarity=0.038  Sum_probs=86.3

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-HHHHhc
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETG  144 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~~~~~  144 (275)
                      ...++.+.++...+|+.+||+|+|||||||||++|+|.++|+ |+|.+.+.- ..    -+.-..|+.|+-.. +++.+.
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-~~----li~lg~Gf~pelTGreNi~l~  113 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-AP----LIELGAGFDPELTGRENIYLR  113 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-eh----hhhcccCCCcccchHHHHHHH
Confidence            445666777777889999999999999999999999999999 999887632 11    12234666665432 333332


Q ss_pred             CC-CccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913          145 GC-PHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV  201 (275)
Q Consensus       145 ~~-~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~  201 (275)
                      +. .-++. +......+.+.+|. +....+..+.. |+||+-|++++-+.. +|+|+|+|.
T Consensus       114 ~~~~G~~~-~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDE  173 (249)
T COG1134         114 GLILGLTR-KEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDE  173 (249)
T ss_pred             HHHhCccH-HHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEeh
Confidence            22 11222 22222222333332 23345666666 999999999998887 999999994

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.68  E-value=1.2e-16  Score=171.99  Aligned_cols=135  Identities=17%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   .. .++.+.++..++|++++|+|+||||||||+++|+|+++|+ |+|.+.+             .++|
T Consensus       640 ~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y  703 (1522)
T TIGR00957       640 HNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY  703 (1522)
T ss_pred             EEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence            566677765   33 3455555566789999999999999999999999999998 9988753             4889


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH---HHHHhhcc-ccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG---PLEELSNL-FKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~---~L~~l~~~-~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ++|++.       +++.++. +..  .+....+.+   ..+.+... .+.+..+.+     ||||+||++||||+. +|+
T Consensus       704 v~Q~~~l~~~Ti~eNI~~g~-~~~--~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~  780 (1522)
T TIGR00957       704 VPQQAWIQNDSLRENILFGK-ALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD  780 (1522)
T ss_pred             EcCCccccCCcHHHHhhcCC-ccC--HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            999863       2333322 111  111111111   12222221 223333333     999999999999999 999


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      ++|+| |++++|..
T Consensus       781 illLDEp~saLD~~  794 (1522)
T TIGR00957       781 IYLFDDPLSAVDAH  794 (1522)
T ss_pred             EEEEcCCccccCHH
Confidence            99999 88888853

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.67  E-value=6.3e-17  Score=172.51  Aligned_cols=141  Identities=9%  Similarity=-0.043  Sum_probs=97.2

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc----CCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l----~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      ++++.+.+....+|++++|+||||||||||||+|+|.+    .|. |+|.+.+.++.... ...++.++|++|+..    
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            34555666667889999999999999999999999986    356 99999887664321 233456999999852    


Q ss_pred             ----HHHHhcCC---Cc-----cchHHHHHH-HHHHHHHhhccccccccc-----cc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          139 ----RAVETGGC---PH-----AAIREDISI-NLGPLEELSNLFKADLLL-----CE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       139 ----~~~~~~~~---~~-----~~~~~~~~~-~~~~L~~l~~~~~~d~~~-----~e-S~G~~q~~~laral~-~~~vll  198 (275)
                          +++.+...   +.     ....+.... ....++.+++....+..+     .. |+|||||+.||++|+ +|+|++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence                23322211   10     111111112 233566666665555443     34 999999999999999 999999


Q ss_pred             Ee-CCCCCCccc
Q 023913          199 ID-VSGGDKIPR  209 (275)
Q Consensus       199 lD-~t~g~d~~~  209 (275)
                      +| |++|+|...
T Consensus       233 lDEPTsgLD~~~  244 (1394)
T TIGR00956       233 WDNATRGLDSAT  244 (1394)
T ss_pred             EeCCCCCcCHHH
Confidence            99 999998643

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=1.6e-16  Score=130.92  Aligned_cols=139  Identities=20%  Similarity=0.219  Sum_probs=91.8

Q ss_pred             CCCccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc----CCCCChHH----HHHhccccCchh
Q 023913           68 RAPPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGE----FLMRNGALPEER  137 (275)
Q Consensus        68 ~~~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d----~~~~~~~~----~~~~ig~v~q~~  137 (275)
                      +.+++...+| .+.||+++|-||+||||||||++|-+-|.|+ |+|.+--..    +....+.+    +++.+||++|.-
T Consensus        23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL  102 (235)
T COG4778          23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL  102 (235)
T ss_pred             EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence            3345544444 5669999999999999999999999999999 999875432    22222322    234699999863


Q ss_pred             H--------HH----HHhcCCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          138 I--------RA----VETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       138 ~--------~~----~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      .        +.    ....|.+.   ......+...|.++.... .+...+.. |||++||+.|||.++ +.+|++|| |
T Consensus       103 RviPRV~aLdVvaePll~~gv~~---~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEP  179 (235)
T COG4778         103 RVIPRVSALDVVAEPLLARGVPR---EVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEP  179 (235)
T ss_pred             HhccCcchHHHHHhHHHHcCCCH---HHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCC
Confidence            1        00    01111111   111123344566664443 23444555 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      |+.+|...
T Consensus       180 TasLDa~N  187 (235)
T COG4778         180 TASLDATN  187 (235)
T ss_pred             cccccccc
Confidence            88888654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.66  E-value=2.3e-16  Score=144.92  Aligned_cols=151  Identities=17%  Similarity=0.118  Sum_probs=110.8

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC------CCcEEEEeccCCCCChHHHHH-
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM-  128 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~------~g~i~i~~~d~~~~~~~~~~~-  128 (275)
                      .+.|..++  +..+++.+.++...+||.++|+|.+|||||-..+.++++++.      .|+|.+.|.++-...+.++++ 
T Consensus        13 sV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~i   90 (534)
T COG4172          13 SVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGV   90 (534)
T ss_pred             EEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhh
Confidence            45566665  245566666677788999999999999999999999999873      379999999988777666654 


Q ss_pred             ---hccccCchhHHH--HH--hc-------CC-CccchHHHHHHHHHHHHHhhccc---cccccccc-ChhHHHHHHHHH
Q 023913          129 ---RNGALPEERIRA--VE--TG-------GC-PHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSR  189 (275)
Q Consensus       129 ---~ig~v~q~~~~~--~~--~~-------~~-~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e-S~G~~q~~~lar  189 (275)
                         +|+++||++..-  ..  .+       .+ ...+.++..+++++.|+.++...   .++.++-| ||||+||++||.
T Consensus        91 RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAM  170 (534)
T COG4172          91 RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAM  170 (534)
T ss_pred             cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHH
Confidence               699999998411  00  00       00 11122233345666777776654   45666777 999999999999


Q ss_pred             Hhc-CceEEEEe-CCCCCCcc
Q 023913          190 ELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       190 al~-~~~vlllD-~t~g~d~~  208 (275)
                      ||+ +|+++|.| ||+.+|+.
T Consensus       171 ALan~P~lLIADEPTTALDVt  191 (534)
T COG4172         171 ALANEPDLLIADEPTTALDVT  191 (534)
T ss_pred             HHcCCCCeEeecCCcchhhhh
Confidence            999 89999999 88888863

>PLN03130 ABC transporter C family member; Provisional

Probab=99.66  E-value=2.1e-16  Score=170.38  Aligned_cols=136  Identities=19%  Similarity=0.131  Sum_probs=93.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|+.. .+...+.+.++..++|++++|+||+|||||||+++|+|.++|+  |+|.+             +..++|
T Consensus       618 ~nvsf~y~~~-~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iay  683 (1622)
T PLN03130        618 KNGYFSWDSK-AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAY  683 (1622)
T ss_pred             EeeEEEccCC-CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEE
Confidence            6677888651 0123445555566789999999999999999999999999886  56652             346899


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHH-hh-ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEE-LS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~-l~-~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ++|++.       +|+.++ .+..  .+....+.+  .|.. +. ...+.+..++|     |||||||++||||+. +++
T Consensus       684 v~Q~p~LfngTIreNI~fg-~~~d--~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~  760 (1622)
T PLN03130        684 VPQVSWIFNATVRDNILFG-SPFD--PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSD  760 (1622)
T ss_pred             EcCccccCCCCHHHHHhCC-Cccc--HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            999973       334343 3321  122222211  1221 11 23455666766     999999999999999 899


Q ss_pred             EEEEe-CCCCCCc
Q 023913          196 IYIID-VSGGDKI  207 (275)
Q Consensus       196 vlllD-~t~g~d~  207 (275)
                      |+||| |++++|.
T Consensus       761 IlLLDEptSALD~  773 (1622)
T PLN03130        761 VYIFDDPLSALDA  773 (1622)
T ss_pred             EEEECCCccccCH
Confidence            99999 8888885

>PLN03073 ABC transporter F family; Provisional

Probab=99.66  E-value=3.4e-16  Score=157.11  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=89.5

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc---CCC-CcEEEEeccCCCC--Ch------------HHH
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTK--ED------------GEF  126 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l---~~~-g~i~i~~~d~~~~--~~------------~~~  126 (275)
                      |+++..+.+.++...+|++++|+|+|||||||||++|+|..   .|+ |+|.+...++...  ..            ..+
T Consensus       187 y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~  266 (718)
T PLN03073        187 VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLL  266 (718)
T ss_pred             eCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHH
Confidence            33455555666667889999999999999999999999853   355 8998776543211  11            011


Q ss_pred             HHhccccCchhHHHHH------hc----CCCccchHHHH----------------HHHHHHHHHhhcc-ccccccccc-C
Q 023913          127 LMRNGALPEERIRAVE------TG----GCPHAAIREDI----------------SINLGPLEELSNL-FKADLLLCE-S  178 (275)
Q Consensus       127 ~~~ig~v~q~~~~~~~------~~----~~~~~~~~~~~----------------~~~~~~L~~l~~~-~~~d~~~~e-S  178 (275)
                      .+.+++++|.+.....      ..    +.+.......+                ..+...|..++.. ...++.+.+ |
T Consensus       267 ~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LS  346 (718)
T PLN03073        267 EEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFS  346 (718)
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCC
Confidence            2336677665422111      00    00000000001                1122234444432 223555666 9


Q ss_pred             hhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          179 GGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       179 ~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +||+||++||++|+ +|.++||| |++++|...
T Consensus       347 gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~  379 (718)
T PLN03073        347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHA  379 (718)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            99999999999999 89999999 999998654

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=4.1e-16  Score=154.16  Aligned_cols=139  Identities=21%  Similarity=0.200  Sum_probs=103.3

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---C-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      ++.+.+++....+|++.||+||.||||||||++|+|....   . |+|.+++..   ......++..|||.|+..     
T Consensus        43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~QdD~l~~~L  119 (613)
T KOG0061|consen   43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQDDVLLPTL  119 (613)
T ss_pred             ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEcccccccccc
Confidence            3444455556788999999999999999999999998764   3 889888733   234566778999999973     


Q ss_pred             ---HHHHhc---CCCc-cchHHHHHHHHHHHHHhhccccccccccc------ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 ---RAVETG---GCPH-AAIREDISINLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 ---~~~~~~---~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e------S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                         +.+...   ..+. .+..+....+.+.+.++++..-.+.++..      |+|||+|+++|..++ +|.|+++| ||+
T Consensus       120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS  199 (613)
T KOG0061|consen  120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS  199 (613)
T ss_pred             cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence               222211   1111 23344445667788888887767777752      999999999999999 99999999 999


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      |+|...
T Consensus       200 GLDS~s  205 (613)
T KOG0061|consen  200 GLDSFS  205 (613)
T ss_pred             Ccchhh
Confidence            998643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.64  E-value=6.5e-16  Score=165.88  Aligned_cols=124  Identities=17%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RA  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~  140 (275)
                      .++.+.++...+|++++|+|||||||||||++|+|+++|+ |.|.+.+             .++|++|++.       ++
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN  506 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN  506 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence            3455555666789999999999999999999999999998 9998754             3788888862       33


Q ss_pred             HHhcCCCccchHHHHHHHHH--HHH-Hhhcc-cccccccc----c-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          141 VETGGCPHAAIREDISINLG--PLE-ELSNL-FKADLLLC----E-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~--~L~-~l~~~-~~~d~~~~----e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      +.++.. ...  +....+.+  .|. .+... .+....+.    . |+||+||++||||++ +|+++||| |++++|..
T Consensus       507 I~~g~~-~~~--~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~  582 (1490)
T TIGR01271       507 IIFGLS-YDE--YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV  582 (1490)
T ss_pred             HHhccc-cch--HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            333321 110  11111111  121 11111 11222232    2 999999999999999 89999999 89998854

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.64  E-value=2e-15  Score=138.41  Aligned_cols=148  Identities=15%  Similarity=0.026  Sum_probs=101.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|+.   ..=-+--++....+||++.|+|.||||||||+++|.|+++|+ |+|.++++.+......+.++-++.+
T Consensus       326 rnvrfay~~---~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav  402 (546)
T COG4615         326 RNVRFAYQD---NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV  402 (546)
T ss_pred             eeeeeccCc---ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence            555566665   111122334456779999999999999999999999999999 9999999999877788888888888


Q ss_pred             CchhHHHHHh-cCCCccchHHHHHHHHHHHHHhhccc---cccccccc---ChhHHHHHHHHHHhc-CceEEEEeCCCCC
Q 023913          134 PEERIRAVET-GGCPHAAIREDISINLGPLEELSNLF---KADLLLCE---SGGDNLAANFSRELA-DYIIYIIDVSGGD  205 (275)
Q Consensus       134 ~q~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~l~~~~---~~d~~~~e---S~G~~q~~~laral~-~~~vlllD~t~g~  205 (275)
                      +.|.-.+..+ ++....+. +..   ...|+++...+   -.+..+..   |.||++|+++.-|++ +.+|+++|+-..+
T Consensus       403 FsDyhLF~~ll~~e~~as~-q~i---~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD  478 (546)
T COG4615         403 FSDYHLFDQLLGPEGKASP-QLI---EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD  478 (546)
T ss_pred             hhhHhhhHhhhCCccCCCh-HHH---HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence            8776544443 32222221 111   22333332222   11222222   999999999999999 8999999976665


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      ..|.
T Consensus       479 QDPa  482 (546)
T COG4615         479 QDPA  482 (546)
T ss_pred             CChH
Confidence            5443

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.64  E-value=5e-16  Score=128.53  Aligned_cols=141  Identities=23%  Similarity=0.298  Sum_probs=97.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      +++.|+|++|||||||++.++...+ ..++.+..++.+... +......-+    .. .....+||.||+.+.++...+.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~-~~~~~~i~~~~G~~~~d~~~~~~~~----~~-v~~l~~GCiCC~~~~~l~~~l~   74 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQH-GRKIAVIENEFGEVGIDNQLVVDTD----EE-IIEMNNGCICCTVRGDLIRALL   74 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhccc-CCcEEEEecCCCccchhHHHHhCCC----ce-EEEeCCCEeEeeCchhHHHHHH
Confidence            4789999999999999999998743 357888888887643 433333211    10 1113679999998877755432


Q ss_pred             -HHHHh-hcccccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCcc---ccccccccccCEEEEe
Q 023913          161 -PLEEL-SNLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP---RKGGPGITQADLLVIN  224 (275)
Q Consensus       161 -~L~~l-~~~~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~---~~~~~~i~~adiivlN  224 (275)
                       .++.+ .....++++++|+.|...+..+..++           ++..++++|+.++.+..   .....|++.||+||+|
T Consensus        75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln  154 (158)
T cd03112          75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN  154 (158)
T ss_pred             HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence             22333 23457899999988886555544332           16789999987765432   3346899999999999


Q ss_pred             cCCC
Q 023913          225 KTDL  228 (275)
Q Consensus       225 K~Dl  228 (275)
                      |+|+
T Consensus       155 k~dl  158 (158)
T cd03112         155 KTDL  158 (158)
T ss_pred             cccC
Confidence            9996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.64  E-value=8e-17  Score=171.75  Aligned_cols=139  Identities=17%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      ..++.+.+....+|++++|+|||||||||||++|+|.++|    +|+|.+.+.++....   .++.++|++|+..     
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence            3455566666788999999999999999999999999876    489999887764322   2467999999852     


Q ss_pred             ---HHHHhc-CCCc----------cchHHH---------H---------------HHHHHHHHHhhccccccc-----cc
Q 023913          139 ---RAVETG-GCPH----------AAIRED---------I---------------SINLGPLEELSNLFKADL-----LL  175 (275)
Q Consensus       139 ---~~~~~~-~~~~----------~~~~~~---------~---------------~~~~~~L~~l~~~~~~d~-----~~  175 (275)
                         +++.+. .|..          ...++.         .               ..+...|+.+++....+.     .+
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence               233222 1110          000110         0               012335566666544433     33


Q ss_pred             cc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          176 CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       176 ~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .. |+||+||+.+|++|+ +|+++++| |++|+|...
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t  371 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST  371 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH
Confidence            34 999999999999999 89999999 999998643

>PTZ00243 ABC transporter; Provisional

Probab=99.63  E-value=7e-16  Score=165.97  Aligned_cols=125  Identities=14%  Similarity=0.049  Sum_probs=83.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (275)
                      ..++.+.++...+|++++|+|+|||||||||++|+|.++|+ |+|.+.             +.++|++|++.       +
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e  739 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG  739 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence            33455555666789999999999999999999999999998 988641             35899999862       2


Q ss_pred             HHHhcCCCccchHHHHHH------HHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          140 AVETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~------~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      ++.++. +.  ..+....      ..+.++.+  +.....+....+ |+||+||++|||+++ +|+|+||| |++++|..
T Consensus       740 nI~~~~-~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        740 NILFFD-EE--DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             HHHcCC-hh--hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            332221 11  0011111      11122222  111111222333 999999999999999 99999999 89999853

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.61  E-value=3e-15  Score=136.16  Aligned_cols=191  Identities=19%  Similarity=0.161  Sum_probs=113.1

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHH-H--hccccCchhHHHHH-hcCCCccc
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL-M--RNGALPEERIRAVE-TGGCPHAA  150 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~-~--~ig~v~q~~~~~~~-~~~~~~~~  150 (275)
                      ...++++++|+|++|||||||++.++..+... .++.++..|+.... ...+. .  ++.....++..++. +...  +.
T Consensus        30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  107 (300)
T TIGR00750        30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTR--GH  107 (300)
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcc--cc
Confidence            34569999999999999999999999987766 68889888876421 11111 0  01111111100000 0000  00


Q ss_pred             hHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCc
Q 023913          151 IREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAS  230 (275)
Q Consensus       151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~  230 (275)
                      .........+.++.+ ....+|.+++|+.|..+...-....++..+++.+|..+.+...........++++|+||+|+..
T Consensus       108 ~~~~~~~~~~~~~~l-~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~  186 (300)
T TIGR00750       108 LGGLSQATRELILLL-DAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEG  186 (300)
T ss_pred             ccchhHHHHHHHHHH-HhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccc
Confidence            000111222334333 3458999999988876655433333466677767777777654444456889999999999986


Q ss_pred             cchhhH--HHHHHHHHhc-----CCCCCEEEEEecCCcCHHHHhccc
Q 023913          231 AIGADL--AVMERDALRM-----RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       231 ~~~~~~--~~~~~~i~~~-----~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ......  ..+...+..+     ....+++++|+++++|++++++.+
T Consensus       187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i  233 (300)
T TIGR00750       187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAI  233 (300)
T ss_pred             hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHH
Confidence            521111  1111112221     112469999999999999998765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.61  E-value=8.3e-16  Score=148.87  Aligned_cols=136  Identities=17%  Similarity=0.106  Sum_probs=91.5

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++   .+....+.++...+|+.++|+||||+|||||||+|+|.+.|. |.|.+-.+           -++||.
T Consensus       325 ~~~~~~y~~---~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf  390 (530)
T COG0488         325 ENVSKGYDG---GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYF  390 (530)
T ss_pred             eccccccCC---CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEE
Confidence            455555555   333444455556779999999999999999999999999888 87765332           247787


Q ss_pred             CchhHHHHHhcCCCccchHHH---------HHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          134 PEERIRAVETGGCPHAAIRED---------ISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       134 ~q~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      .|+.....     +..+..+.         ...+...|..|.... .....+.. ||||+.|+.+|+.++ .|.|+||| 
T Consensus       391 ~Q~~~~l~-----~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE  465 (530)
T COG0488         391 DQHRDELD-----PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE  465 (530)
T ss_pred             EehhhhcC-----ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence            77652111     11011000         123344666665543 23344444 999999999999998 89999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      ||+-+|...
T Consensus       466 PTNhLDi~s  474 (530)
T COG0488         466 PTNHLDIES  474 (530)
T ss_pred             CCccCCHHH
Confidence            899898754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.59  E-value=1.6e-15  Score=129.97  Aligned_cols=116  Identities=15%  Similarity=0.055  Sum_probs=76.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC----------CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~----------g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      ..+| +++|+||||||||||+++|++++.+.          +.+.+.+.+...   ....+.+++++|++..+  +..  
T Consensus        20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~--   91 (197)
T cd03278          20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSI--   91 (197)
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeE--
Confidence            3457 99999999999999999999987554          234444433321   12246799999986433  110  


Q ss_pred             ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                       . ..   ..+.+.++.   ....+..+.+ |+||+||+++|++++     +|.++++| |++++|...
T Consensus        92 -~-~~---~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~  152 (197)
T cd03278          92 -I-SQ---GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN  152 (197)
T ss_pred             -E-eh---hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence             0 01   122223333   2233445555 999999999999974     46899999 888888654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=2.1e-14  Score=126.27  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             ccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          173 LLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       173 ~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.+ |+||+||++||++++     +|+++|+| |++++|...
T Consensus       154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~  197 (243)
T cd03272         154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY  197 (243)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH
Confidence            33444 999999999999994     47999999 888888654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.54  E-value=3.5e-14  Score=124.07  Aligned_cols=51  Identities=20%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~  209 (275)
                      .+.|+.+.... ..+..+.+ |+||+||++||++|+ +|  +++|+| |++++|...
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~  174 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD  174 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH
Confidence            34566665544 35666667 999999999999999 66  699999 888988653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.50  E-value=5.5e-15  Score=122.42  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=101.1

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchH----H
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----E  153 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~----~  153 (275)
                      ...|+++-++|||||||||||..++|+++..|+|.+.|.+.......++.+.-+|+.|+......+..+.+.++.    +
T Consensus        22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~  101 (248)
T COG4138          22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKT  101 (248)
T ss_pred             cccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHH
Confidence            345999999999999999999999999888899999999998887788888889988864211111112222211    1


Q ss_pred             HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc--------CceEEEEe-CCCCCCccccc------cccccc
Q 023913          154 DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPRKG------GPGITQ  217 (275)
Q Consensus       154 ~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~--------~~~vlllD-~t~g~d~~~~~------~~~i~~  217 (275)
                      ....+.+....+...++..+-+.. |||+.||+-+|..++        ...++++| |.+++|+..+.      ..+-..
T Consensus       102 ~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~  181 (248)
T COG4138         102 RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ  181 (248)
T ss_pred             HHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC
Confidence            111111122233344455555555 999999999986654        25799999 78888864321      111123


Q ss_pred             cCEEEEecCCCCc
Q 023913          218 ADLLVINKTDLAS  230 (275)
Q Consensus       218 adiivlNK~Dl~~  230 (275)
                      .-.||+..-||-.
T Consensus       182 G~~vims~HDLNh  194 (248)
T COG4138         182 GLAIVMSSHDLNH  194 (248)
T ss_pred             CcEEEEeccchhh
Confidence            3456777778753

>PRK15494 era GTPase Era; Provisional

Probab=99.49  E-value=2.2e-13  Score=125.96  Aligned_cols=179  Identities=15%  Similarity=0.085  Sum_probs=104.5

Q ss_pred             cccCCCCCCC---ccccccCCCCCCCCCCccccccccCCCc-------EEEEEcCCcchHHHHHHHHHhccCCCCcEEEE
Q 023913           45 YHSHDGLAPH---SHEPIYSPGYFSRRAPPILSRNFNERAF-------TVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (275)
Q Consensus        45 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~ge-------iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~  114 (275)
                      +.+++.+.|.   .++.|.||.   ...++....+....|+       .++|+|.+|+|||||++.|+|.     ++.+.
T Consensus         9 ~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~-----k~~iv   80 (339)
T PRK15494          9 FAYREEFKGDTEALAAAVREDA---STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE-----KLSIV   80 (339)
T ss_pred             cccchhhCCccccccccccCCC---CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC-----ceeec
Confidence            3445566665   677777775   3333333333345577       9999999999999999999985     34333


Q ss_pred             eccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHH--------HHHH
Q 023913          115 TNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDN--------LAAN  186 (275)
Q Consensus       115 ~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~--------q~~~  186 (275)
                      ...+.+...    ...+.+                                 ........+.+++|+.        ....
T Consensus        81 s~k~~tTr~----~~~~~~---------------------------------~~~~~qi~~~DTpG~~~~~~~l~~~~~r  123 (339)
T PRK15494         81 TPKVQTTRS----IITGII---------------------------------TLKDTQVILYDTPGIFEPKGSLEKAMVR  123 (339)
T ss_pred             cCCCCCccC----cEEEEE---------------------------------EeCCeEEEEEECCCcCCCcccHHHHHHH
Confidence            333322111    000110                                 0011122344444541        1111


Q ss_pred             HH-HHh--cCceEEEEeCCCCCCccc-cc---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913          187 FS-REL--ADYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW  259 (275)
Q Consensus       187 la-ral--~~~~vlllD~t~g~d~~~-~~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~  259 (275)
                      .+ .++  ++..++++|+..+.+... ..   ......+.++|+||+|+...   ....+.+.+...++..+++++||++
T Consensus       124 ~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt  200 (339)
T PRK15494        124 CAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS  200 (339)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence            11 112  267888889765433221 11   11224566889999998654   3455666677777778899999999


Q ss_pred             CcCHHHHhcccc
Q 023913          260 VIGIIFTLSITH  271 (275)
Q Consensus       260 ~~g~~~l~~~~~  271 (275)
                      |.|++++++.+.
T Consensus       201 g~gv~eL~~~L~  212 (339)
T PRK15494        201 GKNIDGLLEYIT  212 (339)
T ss_pred             ccCHHHHHHHHH
Confidence            999999998653

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=1.1e-13  Score=144.71  Aligned_cols=122  Identities=23%  Similarity=0.264  Sum_probs=85.1

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------HHH
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------RAV  141 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~~~  141 (275)
                      .+.+.++..++|+.++|+|+.|||||+||.+|+|.++.. |++.+.+.             ++|+||.+.       +|+
T Consensus       536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNI  602 (1381)
T KOG0054|consen  536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENI  602 (1381)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhh
Confidence            455555566779999999999999999999999999987 99888763             789999873       344


Q ss_pred             HhcCCCccchHHHHHHHHH--HH-HHhhcc-ccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          142 ETGGCPHAAIREDISINLG--PL-EELSNL-FKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~--~L-~~l~~~-~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      .+|. +.-.  +....+.+  +| .++... .+-...++|     |||||||+++|||+. +.+|++|| |.+..|.
T Consensus       603 LFG~-~~d~--~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa  676 (1381)
T KOG0054|consen  603 LFGS-PYDE--ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA  676 (1381)
T ss_pred             hcCc-cccH--HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence            3433 2211  11111111  11 122122 233345566     999999999999998 89999999 8777764

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.46  E-value=1.2e-13  Score=130.93  Aligned_cols=146  Identities=13%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             ccccccCCCCCCCCCCcccccccc-CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec-cCCCCChHHHHHhcc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN-DIFTKEDGEFLMRNG  131 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~-d~~~~~~~~~~~~ig  131 (275)
                      .++.|-|++   +- .+.+...|- ..+..++++||||+|||||||+++|.+.|+ |.+..-.. .+..... .......
T Consensus       393 ~nv~F~y~~---~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q-h~~e~ld  467 (614)
T KOG0927|consen  393 QNVSFGYSD---NP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ-HLAEQLD  467 (614)
T ss_pred             eccccCCCC---cc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh-hhHhhcC
Confidence            777787776   22 455555554 559999999999999999999999999998 87754332 2211000 0000000


Q ss_pred             ccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       132 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      +- ..+.++.    ++..............|.++++....+....+  |.||+.|+.+|+.+. .|.++||| ||+++|+
T Consensus       468 l~-~s~le~~----~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi  542 (614)
T KOG0927|consen  468 LD-KSSLEFM----MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI  542 (614)
T ss_pred             cc-hhHHHHH----HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence            00 0001111    11111011223344578888887665555555  999999999999988 89999999 9999998


Q ss_pred             ccc
Q 023913          208 PRK  210 (275)
Q Consensus       208 ~~~  210 (275)
                      ...
T Consensus       543 ~ti  545 (614)
T KOG0927|consen  543 ETI  545 (614)
T ss_pred             hhH
Confidence            653

>COG1159 Era GTPase [General function prediction only]

Probab=99.46  E-value=3.4e-13  Score=120.06  Aligned_cols=147  Identities=19%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      .-+++|+|++.+|||||+|.|+|.     ++++....+++++.    +-.|.+                           
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~-----KisIvS~k~QTTR~----~I~GI~---------------------------   49 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRN----RIRGIV---------------------------   49 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC-----ceEeecCCcchhhh----heeEEE---------------------------
Confidence            458999999999999999999998     89998877765421    111221                           


Q ss_pred             HHHHhhcccccccccccChhH--------HHHHHHHH-Hhc--CceEEEEeCCCCCCcccc-ccccc---cccCEEEEec
Q 023913          161 PLEELSNLFKADLLLCESGGD--------NLAANFSR-ELA--DYIIYIIDVSGGDKIPRK-GGPGI---TQADLLVINK  225 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G~--------~q~~~lar-al~--~~~vlllD~t~g~d~~~~-~~~~i---~~adiivlNK  225 (275)
                            .....+.++++++|.        +.....|+ ++.  |..++++|+..+...-.. ...++   ..+.++++||
T Consensus        50 ------t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNK  123 (298)
T COG1159          50 ------TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNK  123 (298)
T ss_pred             ------EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEc
Confidence                  122334444444443        11222222 233  677788887664332221 11223   3578999999


Q ss_pred             CCCCccchhh-HHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          226 TDLASAIGAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       226 ~Dl~~~~~~~-~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +|....  .. +..+.+.+....+...|+++||+.|.+++.|++.+.
T Consensus       124 ID~~~~--~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~  168 (298)
T COG1159         124 IDKVKP--KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK  168 (298)
T ss_pred             cccCCc--HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence            999987  33 466777888888999999999999999999998653

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.46  E-value=8.6e-14  Score=123.36  Aligned_cols=129  Identities=21%  Similarity=0.195  Sum_probs=77.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEec-cCCCC--ChHHHHHhccccCchhHH----------------
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTK--EDGEFLMRNGALPEERIR----------------  139 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~-d~~~~--~~~~~~~~ig~v~q~~~~----------------  139 (275)
                      ..+++|+||||||||||+++|++++.++  +++.+.+. ++...  ........+++++|++..                
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            6699999999999999999999998865  45555443 22111  001122367778876310                


Q ss_pred             -HHHhcCCCc--cc-hHHHHHHHHHHHHHhhcc--------------------ccccccccc-ChhHHHHHHHHHHhc--
Q 023913          140 -AVETGGCPH--AA-IREDISINLGPLEELSNL--------------------FKADLLLCE-SGGDNLAANFSRELA--  192 (275)
Q Consensus       140 -~~~~~~~~~--~~-~~~~~~~~~~~L~~l~~~--------------------~~~d~~~~e-S~G~~q~~~laral~--  192 (275)
                       .+..+....  .. .......+.+.|+.+...                    ...+..+.+ |+||+||+++|++|+  
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~  184 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL  184 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence             011111000  00 011123444566666443                    112344455 999999999999885  


Q ss_pred             ---CceEEEEe-CCCCCCccc
Q 023913          193 ---DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       193 ---~~~vlllD-~t~g~d~~~  209 (275)
                         +|.++|+| |++++|...
T Consensus       185 ~~~~~~illlDEPt~~ld~~~  205 (251)
T cd03273         185 LFKPAPMYILDEVDAALDLSH  205 (251)
T ss_pred             hccCCCEEEEeCCCcCCCHHH
Confidence               57999999 888887643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.45  E-value=2.5e-13  Score=127.03  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
                      ..-.++|+|++.+|||||+|.|+|..     -.+.....++..|                                    
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgee-----R~Iv~~~aGTTRD------------------------------------  215 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEE-----RVIVSDIAGTTRD------------------------------------  215 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCc-----eEEecCCCCcccc------------------------------------
Confidence            35689999999999999999999983     3556555555443                                    


Q ss_pred             HHHHHhhcccccccccccChhHHHHHHH---------HHHh-----cCceEEEEeCCCCCCcccccc----ccccccCEE
Q 023913          160 GPLEELSNLFKADLLLCESGGDNLAANF---------SREL-----ADYIIYIIDVSGGDKIPRKGG----PGITQADLL  221 (275)
Q Consensus       160 ~~L~~l~~~~~~d~~~~eS~G~~q~~~l---------aral-----~~~~vlllD~t~g~d~~~~~~----~~i~~adii  221 (275)
                       .+..........+.++++.|+|+|..+         +|++     ++-.++++|++.+...+....    .-...+.+|
T Consensus       216 -~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI  294 (444)
T COG1160         216 -SIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI  294 (444)
T ss_pred             -ceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence             111111223344566667777655322         3333     378899999998876554321    223578999


Q ss_pred             EEecCCCCccchhhHHHHHHHHHhcCC---CCCEEEEEecCCcCHHHHhccc
Q 023913          222 VINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      |+||||+.+......+.++..++...+   .+|++++||+++.+++.+++..
T Consensus       295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i  346 (444)
T COG1160         295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAI  346 (444)
T ss_pred             EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence            999999988644556666666665544   7999999999999999998754

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.44  E-value=1.3e-13  Score=141.86  Aligned_cols=141  Identities=17%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC---CCcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      +.++.+.+++-...+|-.++|+|.+||||||||+.|+|-...   +|.|.+.|....   ...+.|.+||+.|+++    
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~  878 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPE  878 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCcc
Confidence            355666677779999999999999999999999999997543   288888876543   2567889999999873    


Q ss_pred             ----HHHHhc---CCC-ccchHHHHHHHHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cc-eEEEEe-CC
Q 023913          139 ----RAVETG---GCP-HAAIREDISINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DY-IIYIID-VS  202 (275)
Q Consensus       139 ----~~~~~~---~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~-~vlllD-~t  202 (275)
                          +-+.+.   +.+ .....+..+.+.+.++.+.+....|.+++.     |..||+|+.|+-.|+ +| .|++|| ||
T Consensus       879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT  958 (1391)
T KOG0065|consen  879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT  958 (1391)
T ss_pred             cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence                111111   111 122233334455566666666667777766     889999999999998 88 899999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +|+|.++
T Consensus       959 SGLDsqa  965 (1391)
T KOG0065|consen  959 SGLDSQA  965 (1391)
T ss_pred             CCccHHH
Confidence            9999765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.43  E-value=5.3e-13  Score=129.66  Aligned_cols=153  Identities=18%  Similarity=0.124  Sum_probs=92.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+..|+   .+.-+.+.+.-..+|+-+.|.|++|||||||+|+|+|+.+-. |+|.+=..           .++-|+
T Consensus       396 ~nl~l~~p~---~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lfl  461 (604)
T COG4178         396 ENLSLRTPD---GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFL  461 (604)
T ss_pred             eeeeEECCC---CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEe
Confidence            566666776   453344444455779999999999999999999999999865 77654311           123455


Q ss_pred             Cchh------HHHHH-hcCCC-ccchHHHHHHHH------HHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEE
Q 023913          134 PEER------IRAVE-TGGCP-HAAIREDISINL------GPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       134 ~q~~------~~~~~-~~~~~-~~~~~~~~~~~~------~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vll  198 (275)
                      ||.|      .+... ..... .... +.+..++      +..+++......+.++  |+|++||+++||.++ .|++++
T Consensus       462 pQ~PY~p~GtLre~l~YP~~~~~~~d-~~l~~vL~~vgL~~L~~rl~~~~~W~~vL--S~GEqQRlafARilL~kP~~v~  538 (604)
T COG4178         462 PQRPYLPQGTLREALCYPNAAPDFSD-AELVAVLHKVGLGDLAERLDEEDRWDRVL--SGGEQQRLAFARLLLHKPKWVF  538 (604)
T ss_pred             cCCCCCCCccHHHHHhCCCCCCCCCh-HHHHHHHHHcCcHHHHHHHhccCcHhhhc--ChhHHHHHHHHHHHHcCCCEEE
Confidence            5544      22211 11111 1111 1111111      1223333333344433  999999999999999 899999


Q ss_pred             Ee-CCCCCCccccc--cccc--cccCEEEEe
Q 023913          199 ID-VSGGDKIPRKG--GPGI--TQADLLVIN  224 (275)
Q Consensus       199 lD-~t~g~d~~~~~--~~~i--~~adiivlN  224 (275)
                      || +|+.+|.....  -.++  +.+++.||+
T Consensus       539 LDEATsALDe~~e~~l~q~l~~~lp~~tvIS  569 (604)
T COG4178         539 LDEATSALDEETEDRLYQLLKEELPDATVIS  569 (604)
T ss_pred             EecchhccChHHHHHHHHHHHhhCCCCEEEE
Confidence            99 67777765432  1223  337777765

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.4e-13  Score=129.88  Aligned_cols=138  Identities=15%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc--CCCCChHHHHHhccccCchhHHHH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND--IFTKEDGEFLMRNGALPEERIRAV  141 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d--~~~~~~~~~~~~ig~v~q~~~~~~  141 (275)
                      .|+++..+.+.+.....|..+||+|+||+||||||++|+.-     .|.....+  .... +......  .+-.+..+.-
T Consensus        89 a~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-----~v~~f~veqE~~g~-~t~~~~~--~l~~D~~~~d  160 (582)
T KOG0062|consen   89 AYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-----QVSGFHVEQEVRGD-DTEALQS--VLESDTERLD  160 (582)
T ss_pred             eecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-----CcCccCchhheecc-chHHHhh--hhhccHHHHH
Confidence            45555555555556678999999999999999999999982     22222211  1110 0000000  0000000000


Q ss_pred             HhcCCCccchHHHHHHHHH-HHHHhhccccc-cccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISINLG-PLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~-~L~~l~~~~~~-d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .+.........-.+..+.. .|..++..... ...+.+ |||.+.|++|||||. +|+|+||| ||+-+|+.+
T Consensus       161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a  233 (582)
T KOG0062|consen  161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA  233 (582)
T ss_pred             HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence            0000000000001112222 55555444332 233444 999999999999998 99999999 888888765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.43  E-value=4.2e-14  Score=122.39  Aligned_cols=127  Identities=18%  Similarity=0.006  Sum_probs=69.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc-CCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI  157 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l-~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~  157 (275)
                      +|++++|+|+||||||||+++|++.+ .+. +..... ..............+++++|......................
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~  105 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI  105 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh
Confidence            48999999999999999999999643 332 332221 000111112223457777776421110000111111111110


Q ss_pred             HHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-----------CceEEEEe-CCCCCCccc
Q 023913          158 NLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----------DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       158 ~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-----------~~~vlllD-~t~g~d~~~  209 (275)
                      .  .+.........+..+.+ |+||+||+++|++++           +|+++|+| |++++|...
T Consensus       106 ~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~  168 (213)
T cd03279         106 V--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA  168 (213)
T ss_pred             h--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH
Confidence            0  11111112223444444 999999999999996           45799999 888888643

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2e-12  Score=123.31  Aligned_cols=142  Identities=18%  Similarity=0.156  Sum_probs=102.5

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH---------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~---------  138 (275)
                      .+.++++...+||++||.|-.|||+|-|++.|.|..++. |+|.+.+.++...++. .+...++|+|+++-         
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            355666667889999999999999999999999987777 9999999988766655 44557999999862         


Q ss_pred             --HHHHhc---CCC---ccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 --RAVETG---GCP---HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 --~~~~~~---~~~---~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                        +|+.+.   ...   ....+.....+.+.+..+..+. ..+..+.. |||.+||+.|||.|. +|+|+||| ||.|.|
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID  433 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID  433 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence              222111   100   1111222233344555554433 44555556 999999999999999 99999999 999999


Q ss_pred             ccccc
Q 023913          207 IPRKG  211 (275)
Q Consensus       207 ~~~~~  211 (275)
                      +-+|.
T Consensus       434 VGAK~  438 (500)
T COG1129         434 VGAKA  438 (500)
T ss_pred             cchHH
Confidence            86653

>PRK00089 era GTPase Era; Reviewed

Probab=99.40  E-value=1.2e-12  Score=118.33  Aligned_cols=148  Identities=17%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      ..+++|+|++|||||||+|.|+|.     ++.+....+.+...    ...++..                          
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~-----~~~~vs~~~~tt~~----~i~~i~~--------------------------   49 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRH----RIRGIVT--------------------------   49 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCC-----ceeecCCCCCcccc----cEEEEEE--------------------------
Confidence            457999999999999999999986     44444443332211    0001100                          


Q ss_pred             HHHHhhcccccccccccChhHHH--------HHHHH-HHh--cCceEEEEeCCCCCCcccc-cc---ccccccCEEEEec
Q 023913          161 PLEELSNLFKADLLLCESGGDNL--------AANFS-REL--ADYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINK  225 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G~~q--------~~~la-ral--~~~~vlllD~t~g~d~~~~-~~---~~i~~adiivlNK  225 (275)
                             ....+..+.+++|...        ....+ .++  ++..++++|++........ ..   .....+.++|+||
T Consensus        50 -------~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNK  122 (292)
T PRK00089         50 -------EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNK  122 (292)
T ss_pred             -------cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEEC
Confidence                   0112333444444211        11111 122  2678889998763322111 11   1224578999999


Q ss_pred             CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +|+.... ..+....+.+.+..+..+++++|++++.|++++++.+.
T Consensus       123 iDl~~~~-~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~  167 (292)
T PRK00089        123 IDLVKDK-EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIA  167 (292)
T ss_pred             CcCCCCH-HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence            9998431 34444555666666778999999999999999987653

>TIGR00436 era GTP-binding protein Era

Probab=99.39  E-value=1.5e-12  Score=116.77  Aligned_cols=77  Identities=13%  Similarity=0.013  Sum_probs=50.2

Q ss_pred             CceEEEEeCCCCCCccccccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          193 DYIIYIIDVSGGDKIPRKGGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +..++++|++...........   ....+-++|+||+|+...  .......+.+....+..+++++||++|.|++++++.
T Consensus        81 Dvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~  158 (270)
T TIGR00436        81 DLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAF  158 (270)
T ss_pred             CEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence            678889998765432211111   124566899999999754  333223333444445568999999999999999876


Q ss_pred             cc
Q 023913          270 TH  271 (275)
Q Consensus       270 ~~  271 (275)
                      +.
T Consensus       159 l~  160 (270)
T TIGR00436       159 IE  160 (270)
T ss_pred             HH
Confidence            53

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04163 Era Era subfamily

Probab=99.39  E-value=1.8e-12  Score=105.15  Aligned_cols=78  Identities=15%  Similarity=-0.005  Sum_probs=55.3

Q ss_pred             CceEEEEeCCCCCCccc-ccccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPR-KGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-~~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|++....... ....+   .+.+.++|+||+|+.... ..+..+.+.+....+..+++.+|++++.|++++++
T Consensus        84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~  162 (168)
T cd04163          84 DLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-EDLLPLLEKLKELGPFAEIFPISALKGENVDELLE  162 (168)
T ss_pred             CEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH-HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence            67888999876522111 11111   236789999999998432 45566666777777778999999999999999988


Q ss_pred             ccc
Q 023913          269 ITH  271 (275)
Q Consensus       269 ~~~  271 (275)
                      .+.
T Consensus       163 ~l~  165 (168)
T cd04163         163 EIV  165 (168)
T ss_pred             HHH
Confidence            654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.39  E-value=8e-12  Score=101.16  Aligned_cols=77  Identities=16%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             CceEEEEeCCCCCC-ccccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          193 DYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       193 ~~~vlllD~t~g~d-~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +-.+++.|++.... .|..+...|..+-+-|+||+|+... .++++..+++++...- .+||++|+.+++|+++|.+.++
T Consensus        65 d~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~-~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   65 DVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGV-KEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCC-CCeEEEECCCCcCHHHHHHHHh
Confidence            66778889887654 3555566678888899999999832 2678888888877654 4689999999999999988764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.3e-12  Score=121.41  Aligned_cols=137  Identities=19%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             ccccccCCCCCCCCCCccccccccCC-CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      -+|+|-||+    .++++....|-.. -..++|+||||.||||||++|+|-+.|+ |...-.-           +-+||+
T Consensus       590 H~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~  654 (807)
T KOG0066|consen  590 HDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW  654 (807)
T ss_pred             ccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence            567888888    4455555555444 7789999999999999999999999987 7543110           123555


Q ss_pred             cCchhHHHHHhcCCCc------cchHHHHHHHHHHHHHhhcccccccc-ccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          133 LPEERIRAVETGGCPH------AAIREDISINLGPLEELSNLFKADLL-LCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       133 v~q~~~~~~~~~~~~~------~~~~~~~~~~~~~L~~l~~~~~~d~~-~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      .-|...+.+  ++...      ..+.-....+...|-.|++..-...+ +.+ ||||+-|+++|-..+ .|+|+||| ||
T Consensus       655 FdQh~~E~L--~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT  732 (807)
T KOG0066|consen  655 FDQHANEAL--NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT  732 (807)
T ss_pred             hhhhhHHhh--ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence            444322111  11100      00000112334466666665433333 333 999999999986544 89999999 88


Q ss_pred             CCCCcc
Q 023913          203 GGDKIP  208 (275)
Q Consensus       203 ~g~d~~  208 (275)
                      +.+|+-
T Consensus       733 NNLDIE  738 (807)
T KOG0066|consen  733 NNLDIE  738 (807)
T ss_pred             CCcchh
Confidence            888864

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.38  E-value=5.8e-14  Score=121.62  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             ccccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          171 ADLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       171 ~d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                      .+..+.. |+||+||+++|++++     +|.++++| |++++|...
T Consensus       121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~  166 (212)
T cd03274         121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN  166 (212)
T ss_pred             cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH
Confidence            3444444 999999999999885     37999999 888988654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.38  E-value=8.3e-13  Score=123.21  Aligned_cols=130  Identities=17%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             ccccCCC---CCCCCCCccccc-cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc
Q 023913           57 EPIYSPG---YFSRRAPPILSR-NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (275)
Q Consensus        57 ~~~~~~~---~~~~~~~~~~~~-~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (275)
                      .-+.|++   .|++.+  +.+. -....||+++++||||-|||||+++|+|.++|+ |+    ..+          -+++
T Consensus       341 ~lv~y~~~~k~~g~F~--L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vS  404 (591)
T COG1245         341 TLVEYPDLKKTYGDFK--LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVS  404 (591)
T ss_pred             eeeecchheeecCceE--EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEe
Confidence            3355665   444432  2222 234569999999999999999999999999998 75    111          1233


Q ss_pred             ccCchh-------HHHHHhc--C--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          132 ALPEER-------IRAVETG--G--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       132 ~v~q~~-------~~~~~~~--~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                      |-||..       .+.....  .  .....++      .+.+..|.+...+++.+.+ |||+.||+++|.+|. +++++|
T Consensus       405 yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl  478 (591)
T COG1245         405 YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL  478 (591)
T ss_pred             ecceeecCCCCCcHHHHHHHhhhhhcccchhH------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence            333321       1111110  0  0011111      1123334444456666777 999999999999999 899999


Q ss_pred             Ee-CCCCCCcc
Q 023913          199 ID-VSGGDKIP  208 (275)
Q Consensus       199 lD-~t~g~d~~  208 (275)
                      || |++.+|.-
T Consensus       479 lDEPSA~LDvE  489 (591)
T COG1245         479 LDEPSAYLDVE  489 (591)
T ss_pred             ecCchhhccHH
Confidence            99 77788864

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.34  E-value=4.1e-12  Score=113.31  Aligned_cols=51  Identities=24%  Similarity=0.352  Sum_probs=38.5

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~  209 (275)
                      .+.|+.+++.+ ..+..+.+ |+||+||+.+|++|+ +   |.++|+| |++++|...
T Consensus       150 ~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~  207 (261)
T cd03271         150 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD  207 (261)
T ss_pred             HHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH
Confidence            34555555544 34555556 999999999999998 4   6899999 899998654

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.31  E-value=4.5e-12  Score=120.35  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=82.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC---CcEEEEeccCCCCChHHHHHhcc-ccCchhHH---
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR---  139 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~---g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~---  139 (275)
                      +.....++.+-..+|+.++|+|+|||||||+|++|.+...|.   -.++....++.. ++....+.+- ...+...+   
T Consensus        87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p-s~~~av~~v~~~~~~e~~rle~  165 (614)
T KOG0927|consen   87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP-SEKQAVQAVVMETDHERKRLEY  165 (614)
T ss_pred             CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC-chHHHHHHHhhhhHHHHHHHHH
Confidence            355566666667889999999999999999999999987764   334444444322 1222222111 11111110   


Q ss_pred             HHH-h-cCCCc---cch---HHH--------H-HHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          140 AVE-T-GGCPH---AAI---RED--------I-SINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       140 ~~~-~-~~~~~---~~~---~~~--------~-~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      +.+ + ..|..   ..+   .+.        + ..+...|..++.. .-.++.+.+ |+|++.|++|||+|. .|.+++|
T Consensus       166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL  245 (614)
T KOG0927|consen  166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL  245 (614)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence            111 1 11111   110   000        0 1122233333222 233455555 999999999999999 8999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | ||+++|.-+
T Consensus       246 DEPtnhLDleA  256 (614)
T KOG0927|consen  246 DEPTNHLDLEA  256 (614)
T ss_pred             cCCccCCCHHH
Confidence            9 999998654

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.31  E-value=1.6e-11  Score=102.45  Aligned_cols=161  Identities=17%  Similarity=0.056  Sum_probs=91.0

Q ss_pred             EEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHH
Q 023913           84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLE  163 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~  163 (275)
                      ++|+|..|||||||++.|++...+.+...............+..+.+...             .             ...
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------~~~   55 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIK-------------S-------------GVA   55 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCee-------------c-------------ceE
Confidence            78999999999999999999755442211111111111111111111000             0             000


Q ss_pred             HhhcccccccccccChhHHHHHHHHH-Hh--cCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hh
Q 023913          164 ELSNLFKADLLLCESGGDNLAANFSR-EL--ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GA  234 (275)
Q Consensus       164 ~l~~~~~~d~~~~eS~G~~q~~~lar-al--~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~  234 (275)
                      .+ ........+.+++|........+ .+  ++..++++|+..+......    .......+.++|+||+|+....  ..
T Consensus        56 ~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~  134 (189)
T cd00881          56 TF-EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEE  134 (189)
T ss_pred             EE-eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHH
Confidence            00 11134566777778654322222 22  3788999998765432211    1112356779999999998631  12


Q ss_pred             hHHHHHHHHHhcC------------CCCCEEEEEecCCcCHHHHhcccc
Q 023913          235 DLAVMERDALRMR------------DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       235 ~~~~~~~~i~~~~------------~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+.+.+.++...            ...+++++|++.+.|++++++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~  183 (189)
T cd00881         135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIV  183 (189)
T ss_pred             HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHH
Confidence            2344444554432            358899999999999999988654

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.30  E-value=1.5e-11  Score=112.69  Aligned_cols=170  Identities=16%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh------HHHHHhccccCchhHHHHHhcCCCccch
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED------GEFLMRNGALPEERIRAVETGGCPHAAI  151 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~------~~~~~~ig~v~q~~~~~~~~~~~~~~~~  151 (275)
                      .++++++|+|||||||||++..|++.+.+. ++|.+.+.|......      ...+..+.++++..      +..+    
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~------~~dp----  181 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE------GADP----  181 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC------CCCH----
Confidence            358999999999999999999999999887 789999988753211      11122344444321      0000    


Q ss_pred             HHHHHHHHHHHHHhhcccccccccccChhHHH--------HHHHHHH---hc----CceEEEEeCCCCCCcccccccccc
Q 023913          152 REDISINLGPLEELSNLFKADLLLCESGGDNL--------AANFSRE---LA----DYIIYIIDVSGGDKIPRKGGPGIT  216 (275)
Q Consensus       152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q--------~~~lara---l~----~~~vlllD~t~g~d~~~~~~~~i~  216 (275)
                         ...+.+.+... ....+|.+++++.|..+        ...+.+.   +.    +..++++|++.+.+.........+
T Consensus       182 ---a~~v~~~l~~~-~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~  257 (318)
T PRK10416        182 ---ASVAFDAIQAA-KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE  257 (318)
T ss_pred             ---HHHHHHHHHHH-HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence               01112233222 34568999999777532        1122221   11    346899999988755443322122


Q ss_pred             --ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 --QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 --~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                        ..+-+|+||.|.....+..+..+    ...  +.||.+++  +|+++++|....
T Consensus       258 ~~~~~giIlTKlD~t~~~G~~l~~~----~~~--~~Pi~~v~--~Gq~~~Dl~~~~  305 (318)
T PRK10416        258 AVGLTGIILTKLDGTAKGGVVFAIA----DEL--GIPIKFIG--VGEGIDDLQPFD  305 (318)
T ss_pred             hCCCCEEEEECCCCCCCccHHHHHH----HHH--CCCEEEEe--CCCChhhCccCC
Confidence              35679999999776644444433    333  78999998  699998876543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.30  E-value=4.4e-11  Score=98.73  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             CceEEEEeCCCCCCcccc-ccc-cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          193 DYIIYIIDVSGGDKIPRK-GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-~~~-~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..++++|++........ ... ....+-++++||+|+...   +.+.+.+.+.+.....|++++|+++++|++++++.+
T Consensus        66 d~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l  142 (158)
T PRK15467         66 DMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL  142 (158)
T ss_pred             CEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence            778888998766432111 111 123456889999998653   455666777776655799999999999999999865


Q ss_pred             c
Q 023913          271 H  271 (275)
Q Consensus       271 ~  271 (275)
                      .
T Consensus       143 ~  143 (158)
T PRK15467        143 A  143 (158)
T ss_pred             H
Confidence            4

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.28  E-value=7.3e-13  Score=114.07  Aligned_cols=116  Identities=20%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             EEEEEcCCcchHHHHHHHHH----hccCCC-CcEEEEeccCCCCChHHHHHhccccCchh-HHHHHhcCCCccchHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-IRAVETGGCPHAAIREDIS  156 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~----g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-~~~~~~~~~~~~~~~~~~~  156 (275)
                      +++|+|+||||||||+++|.    |...++ +++......+.   .......+++++|++ ...  +..+...+..+.+.
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~--~~v~r~~~~~~~~~   98 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKK--YTITRSLAILENVI   98 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCE--EEEEEEhhHhhcee
Confidence            99999999999999999995    776665 54431111111   112234577777764 100  00000001111100


Q ss_pred             H-HHHHHHHhhccccccccccc-ChhHHHH------HHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          157 I-NLGPLEELSNLFKADLLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       157 ~-~~~~L~~l~~~~~~d~~~~e-S~G~~q~------~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      . ....+..+.     +..+.. |+||+|+      ++++++++ +|+++++| |++++|..
T Consensus        99 ~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~  155 (204)
T cd03240          99 FCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE  155 (204)
T ss_pred             eechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence            0 000111111     333334 9999996      67788888 89999999 88888754

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.27  E-value=5.3e-12  Score=103.37  Aligned_cols=141  Identities=22%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-HHHHH-hccc--cCchhHHHHH-h-cCCCccchHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLM-RNGA--LPEERIRAVE-T-GGCPHAAIREDI  155 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~~~~~-~ig~--v~q~~~~~~~-~-~~~~~~~~~~~~  155 (275)
                      +++++|++|||||||++.++..+.+. +++.++..|+..... ..+.. ++..  ..+....... . ++..+....   
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLS---   77 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccc---
Confidence            37899999999999999999988777 789898888754211 11110 0000  0000000000 0 000000001   


Q ss_pred             HHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCC
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD  227 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~D  227 (275)
                      ....+.++.+ ....+|++++++.|..+....+.+.++-.|++.-|..++..+..+..++..||++++||+|
T Consensus        78 ~~~~~~~~~~-~~~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~  148 (148)
T cd03114          78 RATPEVIRVL-DAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD  148 (148)
T ss_pred             hhHHHHHHHH-HhcCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence            1112233333 2347899999988876655444444588888999998888888888999999999999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01895 EngA2 EngA2 subfamily

Probab=99.26  E-value=4.4e-11  Score=97.93  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCC---CCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|+.........    .......+.++++||+|+........+.+.+.+++..+   ..+++++|++++.|+++
T Consensus        86 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  165 (174)
T cd01895          86 DVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDK  165 (174)
T ss_pred             CeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHH
Confidence            778889997655332211    11112456789999999986632344555555554443   57899999999999999


Q ss_pred             Hhccccee
Q 023913          266 TLSITHYI  273 (275)
Q Consensus       266 l~~~~~~~  273 (275)
                      +++.+..+
T Consensus       166 ~~~~l~~~  173 (174)
T cd01895         166 LFDAIDEV  173 (174)
T ss_pred             HHHHHHHh
Confidence            98866543

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01898 Obg Obg subfamily

Probab=99.25  E-value=3.1e-11  Score=99.36  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             CceEEEEeCCCCC-Ccc--cc-------cc-ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGD-KIP--RK-------GG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~-d~~--~~-------~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~  261 (275)
                      +..++++|++... ...  ..       .. .....+-++|+||+|+.+.. ...+.+...+.+. ...+++++|++++.
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~~Sa~~~~  157 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE-ELFELLKELLKEL-WGKPVFPISALTGE  157 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch-hhHHHHHHHHhhC-CCCCEEEEecCCCC
Confidence            6788899987652 111  00       00 01245668999999997652 2223333333332 34679999999999


Q ss_pred             CHHHHhcccce
Q 023913          262 GIIFTLSITHY  272 (275)
Q Consensus       262 g~~~l~~~~~~  272 (275)
                      |++++++.+..
T Consensus       158 gi~~l~~~i~~  168 (170)
T cd01898         158 GLDELLRKLAE  168 (170)
T ss_pred             CHHHHHHHHHh
Confidence            99999987653

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.23  E-value=2.3e-11  Score=99.95  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=59.6

Q ss_pred             cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHH
Q 023913          171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~  238 (275)
                      ....+.+++|+.....+.+...   +..++++|++.......   ...      ..-..+-++++||+|+...  ...++
T Consensus        50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~  127 (167)
T cd04160          50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEE  127 (167)
T ss_pred             EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHH
Confidence            3444556677654444433333   67788999765421110   000      0123566889999998765  33444


Q ss_pred             HHHHHHhc----C-CCCCEEEEEecCCcCHHHHhccc
Q 023913          239 MERDALRM----R-DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       239 ~~~~i~~~----~-~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +.+.+...    . ...+++++|+++|+|++++++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l  164 (167)
T cd04160         128 IKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL  164 (167)
T ss_pred             HHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence            54444432    1 24589999999999999998875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.22  E-value=3.1e-11  Score=113.37  Aligned_cols=144  Identities=21%  Similarity=0.189  Sum_probs=90.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI  157 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~  157 (275)
                      ..+|-.++|+|++.+|||||||.|++.     ..+++..-+++++|  +.+          +.+.++|            
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~-----d~AIVTdI~GTTRD--vie----------e~i~i~G------------  264 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGR-----DRAIVTDIAGTTRD--VIE----------EDINLNG------------  264 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcC-----CceEecCCCCCccc--eEE----------EEEEECC------------
Confidence            356899999999999999999999998     56777776776654  111          0011222            


Q ss_pred             HHHHHHHhhcccccccccccChhH------HHHHHHHHHh--c---CceEEEEeCCCCCCccc-cccc-cc-cccCEEEE
Q 023913          158 NLGPLEELSNLFKADLLLCESGGD------NLAANFSREL--A---DYIIYIIDVSGGDKIPR-KGGP-GI-TQADLLVI  223 (275)
Q Consensus       158 ~~~~L~~l~~~~~~d~~~~eS~G~------~q~~~laral--~---~~~vlllD~t~g~d~~~-~~~~-~i-~~adiivl  223 (275)
                                   .-..+.++.|.      --|+.+-|+.  +   |-.++++|++..++... .... .. ...-++|+
T Consensus       265 -------------~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~  331 (454)
T COG0486         265 -------------IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVL  331 (454)
T ss_pred             -------------EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEE
Confidence                         22222223332      2344444443  2   67889999877533221 1111 11 23458899


Q ss_pred             ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ||+||.+.  ...+.+     ++.++.+++.+|+++++|+++|.+-+
T Consensus       332 NK~DL~~~--~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i  371 (454)
T COG0486         332 NKADLVSK--IELESE-----KLANGDAIISISAKTGEGLDALREAI  371 (454)
T ss_pred             echhcccc--cccchh-----hccCCCceEEEEecCccCHHHHHHHH
Confidence            99999987  232222     45566689999999999999987643

>cd04155 Arl3 Arl3 subfamily

Probab=99.22  E-value=5.3e-11  Score=98.49  Aligned_cols=143  Identities=17%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      ...++|+|++|||||||++.|.+.....     .  .+          ..|+-..                         
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-----~--~~----------t~g~~~~-------------------------   51 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISH-----I--TP----------TQGFNIK-------------------------   51 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcc-----c--CC----------CCCcceE-------------------------
Confidence            5679999999999999999999862110     0  00          0010000                         


Q ss_pred             HHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---------cccccccccCEEEEecCCC
Q 023913          161 PLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDL  228 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---------~~~~~i~~adiivlNK~Dl  228 (275)
                         .+ .....+..+.+++|+.+.........   +..++++|.+.......         +.......+-++++||+|+
T Consensus        52 ---~i-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  127 (173)
T cd04155          52 ---TV-QSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL  127 (173)
T ss_pred             ---EE-EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence               00 00112333445666554333322222   45688888664221110         0001123566788999999


Q ss_pred             CccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          229 ASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       229 ~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ...  ...+.+.+.+...   +...+++++|+++++|++++++++.
T Consensus       128 ~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         128 ATA--APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             ccC--CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence            765  3344444433211   1123578999999999999998764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK13768 GTPase; Provisional

Probab=99.22  E-value=9.9e-11  Score=104.10  Aligned_cols=181  Identities=20%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------H--HHHhcCCCccchH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------R--AVETGGCPHAAIR  152 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------~--~~~~~~~~~~~~~  152 (275)
                      .++.+.|+.||||||+...++..+... .++.++..|++...       ++|.+....      .  +...+.+++....
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~-------~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~   75 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY-------LPYTPDFDVRDYVTAREIMKKYGLGPNGALI   75 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc-------CCCCCCcchhhheeHHHHHHHcCCCCchHHH
Confidence            478999999999999999999887766 46888777765321       112111110      1  1112223332221


Q ss_pred             HH---HHH-HHHHHHHhhcccccccccccChhHHHHHH-------HHHHhc----CceEEEEeCCCCCCccc---c-c--
Q 023913          153 ED---ISI-NLGPLEELSNLFKADLLLCESGGDNLAAN-------FSRELA----DYIIYIIDVSGGDKIPR---K-G--  211 (275)
Q Consensus       153 ~~---~~~-~~~~L~~l~~~~~~d~~~~eS~G~~q~~~-------laral~----~~~vlllD~t~g~d~~~---~-~--  211 (275)
                      ..   ... .....+.+ .....++++++++|+.....       +.+.+.    +..++|+|...+.....   . .  
T Consensus        76 ~~~~~~~~~~~~l~~~l-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~  154 (253)
T PRK13768         76 ASVDLLLTKADEIKEEI-ESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLA  154 (253)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHH
Confidence            11   111 11122222 23345889999888644321       223332    46788889755432211   0 0  


Q ss_pred             ---cccccccCEEEEecCCCCccchhhHHHHHH----------------------------HHHhcCCCCCEEEEEecCC
Q 023913          212 ---GPGITQADLLVINKTDLASAIGADLAVMER----------------------------DALRMRDGGPFIFAQVGWV  260 (275)
Q Consensus       212 ---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~----------------------------~i~~~~~~~~ii~~S~~~~  260 (275)
                         ......+-++|+||+|+.+.  .+.+.+.+                            .++.+++..+++++|++++
T Consensus       155 ~~~~~~~~~~~i~v~nK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~  232 (253)
T PRK13768        155 LSVQLRLGLPQIPVLNKADLLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTG  232 (253)
T ss_pred             HHHHHHcCCCEEEEEEhHhhcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCC
Confidence               01245677999999999876  33333322                            2445567779999999999


Q ss_pred             cCHHHHhcccce
Q 023913          261 IGIIFTLSITHY  272 (275)
Q Consensus       261 ~g~~~l~~~~~~  272 (275)
                      +|+++|++....
T Consensus       233 ~gl~~L~~~I~~  244 (253)
T PRK13768        233 EGFDELYAAIQE  244 (253)
T ss_pred             cCHHHHHHHHHH
Confidence            999999987643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.22  E-value=3e-11  Score=97.57  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..++++|++.......  ........+.++|+||+|+.+..  ..       .......+++++|++++.|+++|++.+
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~--~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l  152 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDS--EL-------LSLLAGKPIIAISAKTGEGLDELKEAL  152 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcc--cc-------ccccCCCceEEEECCCCCCHHHHHHHH
Confidence            67888999875432211  11113456779999999998762  22       233446789999999999999999876


Q ss_pred             ce
Q 023913          271 HY  272 (275)
Q Consensus       271 ~~  272 (275)
                      ..
T Consensus       153 ~~  154 (157)
T cd04164         153 LE  154 (157)
T ss_pred             HH
Confidence            54

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.20  E-value=1.2e-10  Score=100.02  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             ccccccChhHHHHHHH-HHHhc--CceEEEEeCCCC-CCccc-cc---cccccc-cCEEEEecCCCCccchhhH----HH
Q 023913          172 DLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGG-DKIPR-KG---GPGITQ-ADLLVINKTDLASAIGADL----AV  238 (275)
Q Consensus       172 d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g-~d~~~-~~---~~~i~~-adiivlNK~Dl~~~~~~~~----~~  238 (275)
                      ...+.+++|+...... .+++.  +..++++|++.+ ...+. ..   ...... +-+||+||+|+...  ...    +.
T Consensus        84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~~  161 (203)
T cd01888          84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYEQ  161 (203)
T ss_pred             EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHHH
Confidence            4456777775433222 22232  788999998753 22111 11   011222 24679999999864  222    33


Q ss_pred             HHHHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          239 MERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       239 ~~~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +++.+... ....+++++|+++++|++++++.+.
T Consensus       162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~  195 (203)
T cd01888         162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIV  195 (203)
T ss_pred             HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHH
Confidence            33333322 2357899999999999999998653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00879 Sar1 Sar1 subfamily

Probab=99.20  E-value=4.3e-11  Score=100.86  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=55.6

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---cccc------cccccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      +.+.+|+.+.-.+.+...   +..++++|.+.....   ....      ......+-+|++||+|+...  ...+.+++.
T Consensus        67 l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~~~~~~  144 (190)
T cd00879          67 TFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEEELRQA  144 (190)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHHHHHHH
Confidence            344555443333333332   567778887643111   0000      01123566888999999754  344556555


Q ss_pred             HHhcC--------------CCCCEEEEEecCCcCHHHHhcccce
Q 023913          243 ALRMR--------------DGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       243 i~~~~--------------~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      ++...              -..+++++|+++++|++++++++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         145 LGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             hCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            54211              1246899999999999999987653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.19  E-value=3.1e-10  Score=91.02  Aligned_cols=76  Identities=13%  Similarity=0.012  Sum_probs=50.0

Q ss_pred             CceEEEEeCCCCCCccc-cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          193 DYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..++++|.+....... .....+..+.++|+||+|+.+.. ...+.+++.+++.+ ..+++++|+++++|++++++.+
T Consensus        64 d~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        64 DVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELLETAG-AEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             CEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHH
Confidence            67788889765543221 11222344778899999997531 23444445554432 3479999999999999998765

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.18  E-value=8.6e-11  Score=109.92  Aligned_cols=141  Identities=20%  Similarity=0.174  Sum_probs=87.3

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHh-ccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR-NGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~-ig~v~q~~~---  138 (275)
                      +|+...-.+-+--...+|.+++|+|+||-||||.+++|+|.+.|. |+.-   .++ .+  .++.+. -|--.|+-.   
T Consensus        83 RYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp-~w--deVi~~FrGtELq~YF~~l  156 (591)
T COG1245          83 RYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPP-SW--DEVIKRFRGTELQNYFKKL  156 (591)
T ss_pred             eccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCC-CH--HHHHHHhhhhHHHHHHHHH
Confidence            455433333344445679999999999999999999999999998 7631   111 11  122221 111111110   


Q ss_pred             -----------HHHH-hcCCCccchHHHHHH------HHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEE
Q 023913          139 -----------RAVE-TGGCPHAAIREDISI------NLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (275)
Q Consensus       139 -----------~~~~-~~~~~~~~~~~~~~~------~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vll  198 (275)
                                 .++. +......+..+.+..      ..+.++.+.+....++-+.+ |||+-||++||.+++ +.++++
T Consensus       157 ~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~  236 (591)
T COG1245         157 YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF  236 (591)
T ss_pred             HcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence                       1111 000011112222211      23456677777778888888 999999999999999 999999


Q ss_pred             Ee-CCCCCCcccc
Q 023913          199 ID-VSGGDKIPRK  210 (275)
Q Consensus       199 lD-~t~g~d~~~~  210 (275)
                      +| |++.+|+..+
T Consensus       237 FDEpsSyLDi~qR  249 (591)
T COG1245         237 FDEPSSYLDIRQR  249 (591)
T ss_pred             EcCCcccccHHHH
Confidence            99 8888997543

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.18  E-value=5.3e-11  Score=111.97  Aligned_cols=197  Identities=15%  Similarity=0.109  Sum_probs=102.6

Q ss_pred             CCCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcc--ccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPI--LSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +.-+..+.++..+..+-+.+..|..+..|..+-     +.....+-.  ....-.+--.-|+|+|+++||||||||.|++
T Consensus       102 ~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~  181 (390)
T PRK12298        102 GEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSA  181 (390)
T ss_pred             CcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhC
Confidence            345667777777778888888888777666433     111111100  0111112233599999999999999999998


Q ss_pred             ccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH--
Q 023913          104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD--  181 (275)
Q Consensus       104 ~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~--  181 (275)
                      .-     +.+ ...+.++.    ....|++....                                ....++.+.+|.  
T Consensus       182 ~k-----~~v-s~~p~TT~----~p~~Giv~~~~--------------------------------~~~i~~vDtPGi~~  219 (390)
T PRK12298        182 AK-----PKV-ADYPFTTL----VPNLGVVRVDD--------------------------------ERSFVVADIPGLIE  219 (390)
T ss_pred             Cc-----ccc-cCCCCCcc----CcEEEEEEeCC--------------------------------CcEEEEEeCCCccc
Confidence            62     212 22222211    11223221000                                000111111111  


Q ss_pred             ------HHHHHHHHHhc--CceEEEEeCCCCC--Cccc---ccc---c-----cccccCEEEEecCCCCccchhhHHHHH
Q 023913          182 ------NLAANFSRELA--DYIIYIIDVSGGD--KIPR---KGG---P-----GITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       182 ------~q~~~laral~--~~~vlllD~t~g~--d~~~---~~~---~-----~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                            ..-..+.+.+-  +..++++|.+...  +...   ...   .     ....+.+||+||+|+...  ..+....
T Consensus       220 ~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l  297 (390)
T PRK12298        220 GASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERA  297 (390)
T ss_pred             cccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHH
Confidence                  01112223333  6677888865221  1111   000   1     124577999999999765  3333333


Q ss_pred             HHHHhcCC-CCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRMRD-GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~~~-~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+.+..+ ..+++++|+++++|++++++.+.
T Consensus       298 ~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~  329 (390)
T PRK12298        298 KAIVEALGWEGPVYLISAASGLGVKELCWDLM  329 (390)
T ss_pred             HHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence            33333333 34799999999999999987553

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.18  E-value=2.5e-11  Score=104.10  Aligned_cols=114  Identities=17%  Similarity=0.043  Sum_probs=63.6

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHH------HhccccCchhHHHHHhcCCCccchHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL------MRNGALPEERIRAVETGGCPHAAIREDI  155 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~------~~ig~v~q~~~~~~~~~~~~~~~~~~~~  155 (275)
                      .+.+|+|+|||||||||..|.-.+.........+.     ...++.      ..+.+.++......    .+.....  .
T Consensus        22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-----~~~~~i~~~~~~~~i~~~~~~~~~~~----~~~~~~~--~   90 (198)
T cd03276          22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-----SLKDLIKDGESSAKITVTLKNQGLDA----NPLCVLS--Q   90 (198)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-----cHHHHhhCCCCeEEEEEEEEcCCccC----CcCCHHH--H
Confidence            38899999999999999999854432211000111     011111      12333443311000    1111111  1


Q ss_pred             HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHh----c-CceEEEEe-CCCCCCccc
Q 023913          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL----A-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral----~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.+.|+.   ....+..+.. |+||+|++++|+++    + +|+++|+| |++++|...
T Consensus        91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~  148 (198)
T cd03276          91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN  148 (198)
T ss_pred             HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence            122223332   2234445555 99999999999988    4 89999999 888888654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd01878 HflX HflX subfamily

Probab=99.16  E-value=9.9e-11  Score=100.00  Aligned_cols=72  Identities=21%  Similarity=0.188  Sum_probs=46.0

Q ss_pred             CceEEEEeCCCCCCccc-----cccccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-----~~~~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......     ....++   ..+-++|+||+|+...  ....   ...  .....+++++|++++.|++
T Consensus       122 d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~--~~~~---~~~--~~~~~~~~~~Sa~~~~gi~  194 (204)
T cd01878         122 DLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD--EELE---ERL--EAGRPDAVFISAKTGEGLD  194 (204)
T ss_pred             CeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh--HHHH---HHh--hcCCCceEEEEcCCCCCHH
Confidence            67888899765432111     111112   2345899999999765  2222   222  2345689999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       195 ~l~~~L~  201 (204)
T cd01878         195 ELLEAIE  201 (204)
T ss_pred             HHHHHHH
Confidence            9988654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.16  E-value=2e-10  Score=94.18  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=58.9

Q ss_pred             cccccccChhHHHHHHHHH---HhcCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhH-HHHHHH
Q 023913          171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADL-AVMERD  242 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~lar---al~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~-~~~~~~  242 (275)
                      .+..+.+++|+..-..+..   ..++..++++|+..+......    .......+.++|+||+|+........ +.+.+.
T Consensus        50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~  129 (168)
T cd01887          50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSEL  129 (168)
T ss_pred             ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHh
Confidence            4555666777533222211   223778999998775432211    11224567789999999875421111 112111


Q ss_pred             HH----hcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 AL----RMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~----~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..    ......+++++|++++.|++++++.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T cd01887         130 GLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL  162 (168)
T ss_pred             hccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence            11    122346899999999999999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.16  E-value=1.1e-10  Score=111.31  Aligned_cols=76  Identities=21%  Similarity=0.241  Sum_probs=53.0

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~~  265 (275)
                      +..|+++|++.+...+...    ......+.+|++||||+.+.  ...+.+.+.++...   +.++++++||+++.|+++
T Consensus       257 d~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~  334 (435)
T PRK00093        257 DVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE--KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDK  334 (435)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH--HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHH
Confidence            7889999988775433221    11124677899999999854  34445554444322   468999999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      +++..
T Consensus       335 l~~~i  339 (435)
T PRK00093        335 LLEAI  339 (435)
T ss_pred             HHHHH
Confidence            98753

>cd04171 SelB SelB subfamily

Probab=99.16  E-value=3e-10  Score=92.54  Aligned_cols=100  Identities=12%  Similarity=-0.011  Sum_probs=58.5

Q ss_pred             ccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCCCcccc----ccccccc-cCEEEEecCCCCccc--hhhHHHHHH
Q 023913          172 DLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGDKIPRK----GGPGITQ-ADLLVINKTDLASAI--GADLAVMER  241 (275)
Q Consensus       172 d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~d~~~~----~~~~i~~-adiivlNK~Dl~~~~--~~~~~~~~~  241 (275)
                      ...+.+++|+....... ..+  ++..++++|...+......    ....... +-++++||+|+....  ....+.+.+
T Consensus        52 ~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~  131 (164)
T cd04171          52 RLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRE  131 (164)
T ss_pred             EEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHH
Confidence            34455677764432222 222  3788999998654222111    1111233 457889999997651  112234444


Q ss_pred             HHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913          242 DALRMR-DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       242 ~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .++... ...+++++|+++++|++++++.+.
T Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence            444321 357899999999999999987653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.15  E-value=1.6e-10  Score=106.54  Aligned_cols=197  Identities=16%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCccc-ccccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPIL-SRNFN-ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~-~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-+..+.+|..+..+-+.+..|..+..|..+-     ++..-+.-.. ...+. .--.-|+|+|+++|||||||+.|++.
T Consensus       101 ~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~  180 (329)
T TIGR02729       101 ELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA  180 (329)
T ss_pred             cEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcC
Confidence            34556666777777777777777776666433     1111111111 11122 22567899999999999999999985


Q ss_pred             cCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhH---
Q 023913          105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD---  181 (275)
Q Consensus       105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~---  181 (275)
                      .+     .+...++.+..+     .+|++.-+        .                        .....+.+.+|+   
T Consensus       181 ~~-----~va~y~fTT~~p-----~ig~v~~~--------~------------------------~~~~~i~D~PGli~~  218 (329)
T TIGR02729       181 KP-----KIADYPFTTLVP-----NLGVVRVD--------D------------------------GRSFVIADIPGLIEG  218 (329)
T ss_pred             Cc-----cccCCCCCccCC-----EEEEEEeC--------C------------------------ceEEEEEeCCCcccC
Confidence            21     111111111111     12221000        0                        001111111111   


Q ss_pred             -----HHHHHHHHHhc--CceEEEEeCCCCC--Cccc----------ccc-ccccccCEEEEecCCCCccchhhHHHHHH
Q 023913          182 -----NLAANFSRELA--DYIIYIIDVSGGD--KIPR----------KGG-PGITQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       182 -----~q~~~laral~--~~~vlllD~t~g~--d~~~----------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                           .....+.+.+-  +..++++|.+...  +...          .+. .....+-+||+||+|+...  ...+.+.+
T Consensus       219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~  296 (329)
T TIGR02729       219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLK  296 (329)
T ss_pred             CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHH
Confidence                 12222333332  6778888976431  1110          011 1124567899999999866  34444544


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhccccee
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSITHYI  273 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~~  273 (275)
                      .+.+.. ..+++++|+++++|++++++.+...
T Consensus       297 ~l~~~~-~~~vi~iSAktg~GI~eL~~~I~~~  327 (329)
T TIGR02729       297 ELKKAL-GKPVFPISALTGEGLDELLYALAEL  327 (329)
T ss_pred             HHHHHc-CCcEEEEEccCCcCHHHHHHHHHHH
Confidence            444332 3679999999999999999876543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.14  E-value=1.3e-10  Score=107.30  Aligned_cols=204  Identities=16%  Similarity=0.155  Sum_probs=101.6

Q ss_pred             CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcc-cccccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPI-LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~-~~~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-+..+.+|.++..+-+.+..|..|..|..+-     +...-++-. ....+. +--.-|+|+|+++|||||||+.|++.
T Consensus       102 ~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a  181 (335)
T PRK12299        102 ELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA  181 (335)
T ss_pred             cEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcC
Confidence            34556666777777777777777777766543     000001111 111122 22556999999999999999999985


Q ss_pred             cCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHH
Q 023913          105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA  184 (275)
Q Consensus       105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~  184 (275)
                      - |    .+-...+.+..+     .+|++.-.        ...                .+...+-+-.+-..+.+....
T Consensus       182 ~-~----~va~ypfTT~~p-----~~G~v~~~--------~~~----------------~~~i~D~PGli~ga~~~~gLg  227 (335)
T PRK12299        182 K-P----KIADYPFTTLHP-----NLGVVRVD--------DYK----------------SFVIADIPGLIEGASEGAGLG  227 (335)
T ss_pred             C-C----ccCCCCCceeCc-----eEEEEEeC--------CCc----------------EEEEEeCCCccCCCCccccHH
Confidence            2 2    111111111111     12221100        000                000000000000002111122


Q ss_pred             HHHHHHhc--CceEEEEeCCCCCCc--cc-------ccc-ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCE
Q 023913          185 ANFSRELA--DYIIYIIDVSGGDKI--PR-------KGG-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       185 ~~laral~--~~~vlllD~t~g~d~--~~-------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~i  252 (275)
                      ..+.+.+-  +..|+++|.+.....  ..       .+. .....+-+||+||+|+.+......+.++......  ..++
T Consensus       228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~--~~~i  305 (335)
T PRK12299        228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAAL--GGPV  305 (335)
T ss_pred             HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhc--CCCE
Confidence            23333332  677888997643211  00       011 1124577899999999765211112222222222  4689


Q ss_pred             EEEEecCCcCHHHHhcccc
Q 023913          253 IFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~~  271 (275)
                      +++||++++|++++++.+.
T Consensus       306 ~~iSAktg~GI~eL~~~L~  324 (335)
T PRK12299        306 FLISAVTGEGLDELLRALW  324 (335)
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            9999999999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.13  E-value=8.9e-11  Score=111.58  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~~  265 (275)
                      +..|+++|++.+...+...    ......+.++|+||+|+... ....+.+.+.++...   +..+++++||++|.|+++
T Consensus       256 d~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~  334 (429)
T TIGR03594       256 DVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDK  334 (429)
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHH
Confidence            7889999988765433221    11124677999999999832 144556665555443   468999999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      +++..
T Consensus       335 l~~~i  339 (429)
T TIGR03594       335 LLDAI  339 (429)
T ss_pred             HHHHH
Confidence            98753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00880 Era_like Era (E

Probab=99.13  E-value=2.1e-10  Score=91.59  Aligned_cols=77  Identities=21%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHH---HHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~---~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|+.........    .......+.++|+||+|+...  ......   ........+..+++++|++++.|+++
T Consensus        77 d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          77 DLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE--EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh--hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            677888887766543322    122345677999999999876  333332   23344556788999999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++...
T Consensus       155 l~~~l~  160 (163)
T cd00880         155 LREALI  160 (163)
T ss_pred             HHHHHH
Confidence            987654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=4e-11  Score=106.11  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             cc-ChhHHHHHHHHHHhc-C----ceEEEEe-CCCCCCccc
Q 023913          176 CE-SGGDNLAANFSRELA-D----YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       176 ~e-S~G~~q~~~laral~-~----~~vlllD-~t~g~d~~~  209 (275)
                      .+ |+||+|+++||++++ +    |.++|+| |++++|...
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~  194 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN  194 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH
Confidence            44 999999999999997 3    8999999 888988643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.12  E-value=1.9e-10  Score=92.60  Aligned_cols=77  Identities=14%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHHHHHHHH--hc-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAVMERDAL--RM-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|.+.......   ...      .....+-++|+||+|+...  ...+.+.+.+.  .. ....+++++|++++
T Consensus        69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHHhCcccccCCceEEEEEEeccC
Confidence            67788888765322110   000      0113355788999998765  23333333321  11 22357899999999


Q ss_pred             cCHHHHhcccc
Q 023913          261 IGIIFTLSITH  271 (275)
Q Consensus       261 ~g~~~l~~~~~  271 (275)
                      .|+++++..+.
T Consensus       147 ~gi~~l~~~l~  157 (159)
T cd04159         147 TNIDIVLDWLI  157 (159)
T ss_pred             CChHHHHHHHh
Confidence            99999987653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.11  E-value=1.8e-10  Score=93.92  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=57.0

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCC---Cccc---cccc---cccccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGD---KIPR---KGGP---GITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~---d~~~---~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+.....++....   +..++++|.....   ....   ....   ....+-++|+||+|+........+...
T Consensus        50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~  129 (164)
T cd04139          50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAA  129 (164)
T ss_pred             EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHH
Confidence            34455666544333433333   6677888854321   1111   1111   134667899999999763212334444


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ...++.  +.+++++|+++++|+++++..+.
T Consensus       130 ~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139         130 NLARQW--GVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             HHHHHh--CCeEEEeeCCCCCCHHHHHHHHH
Confidence            444443  36899999999999999998654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04154 Arl2 Arl2 subfamily

Probab=99.11  E-value=2.6e-10  Score=94.78  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+...-.+.+...   +..++++|.+.......   ..      ......+-+||+||+|+...  ...+.+.
T Consensus        60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~  137 (173)
T cd04154          60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIR  137 (173)
T ss_pred             EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHH
Confidence            34455667654333333333   67788999765421100   00      01123456888999999765  2344455


Q ss_pred             HHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRM---RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +.+...   ....+++++||++|.|++++++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  170 (173)
T cd04154         138 EALELDKISSHHWRIQPCSAVTGEGLLQGIDWL  170 (173)
T ss_pred             HHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence            444322   235689999999999999998764

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.10  E-value=3.4e-10  Score=121.65  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=37.2

Q ss_pred             HHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc----CceEEEEe-CCCCCCccc
Q 023913          161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       161 ~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~----~~~vlllD-~t~g~d~~~  209 (275)
                      .|+.++..+. .+..+.+ |+||+||+.||++|+    +|.++||| |++++|...
T Consensus       792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~  847 (1809)
T PRK00635        792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD  847 (1809)
T ss_pred             HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence            4444444432 4555566 999999999999995    79999999 899988543

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.09  E-value=3.7e-10  Score=92.85  Aligned_cols=76  Identities=17%  Similarity=0.178  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCCCc----ccc----ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI----PRK----GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~----~~~----~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|++.....    ...    ....+ ..+-++|+||+|+...  .......+.. .. +..+++++|+++++|+
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~--~~~~~~~~~~-~~-~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF--EDLSEIEEEE-EL-EGEEVLKISTLTEEGV  156 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch--hhHHHHHHhh-hh-ccCceEEEEecccCCH
Confidence            677888997653211    000    11111 4566889999999765  3333322222 22 3578999999999999


Q ss_pred             HHHhcccce
Q 023913          264 IFTLSITHY  272 (275)
Q Consensus       264 ~~l~~~~~~  272 (275)
                      +++++.+..
T Consensus       157 ~~l~~~l~~  165 (168)
T cd01897         157 DEVKNKACE  165 (168)
T ss_pred             HHHHHHHHH
Confidence            999986543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.09  E-value=5.6e-10  Score=105.37  Aligned_cols=141  Identities=19%  Similarity=0.126  Sum_probs=102.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC-CCCChHHHHH-hccccCchhH-------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLM-RNGALPEERI-------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~-~~~~~~~~~~-~ig~v~q~~~-------  138 (275)
                      .++.+.++....||+++|.|-.|-|-+.|+.+|+|+.++. |+|.+.+.++ +...+.++++ .++|+|+++.       
T Consensus       272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~  351 (501)
T COG3845         272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD  351 (501)
T ss_pred             ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence            4555666666779999999999999999999999998776 9999999997 4445555544 6899999972       


Q ss_pred             ----HHHHhcCCC---c-----cchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          139 ----RAVETGGCP---H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       139 ----~~~~~~~~~---~-----~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                          +|..++...   .     ....+....+.+.+++|.... ........ |||.+||+-+||.|. +|+++|+. ||
T Consensus       352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT  431 (501)
T COG3845         352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT  431 (501)
T ss_pred             ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence                222222111   1     111222234455677775553 33444445 999999999999999 89999999 99


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      .|+|.-+
T Consensus       432 rGLDvgA  438 (501)
T COG3845         432 RGLDVGA  438 (501)
T ss_pred             ccccHHH
Confidence            9999743

>PRK14974 cell division protein FtsY; Provisional

Probab=99.09  E-value=9e-10  Score=101.53  Aligned_cols=172  Identities=20%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHH-H
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IRED-I  155 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~-~  155 (275)
                      +..+++++|+||+||||++..|+..+... .++.+...|.......+..+..+          ...+.+...  ...+ .
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a----------~~lgv~v~~~~~g~dp~  208 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHA----------ERLGVKVIKHKYGADPA  208 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHH----------HHcCCceecccCCCCHH
Confidence            35799999999999999999999988776 57888776644221111111100          001111100  0001 1


Q ss_pred             HHHHHHHHHhhcccccccccccChhHHH-----HHHH---HHHhc-CceEEEEeCCCCCCcccccc--ccccccCEEEEe
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGDNL-----AANF---SRELA-DYIIYIIDVSGGDKIPRKGG--PGITQADLLVIN  224 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q-----~~~l---aral~-~~~vlllD~t~g~d~~~~~~--~~i~~adiivlN  224 (275)
                      ....++++.. .....|.+++++.|..+     ...+   .+.+. +..++++|++.+.+......  ...-..+-+|+|
T Consensus       209 ~v~~~ai~~~-~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT  287 (336)
T PRK14974        209 AVAYDAIEHA-KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT  287 (336)
T ss_pred             HHHHHHHHHH-HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence            1122233332 23457889999777542     1122   22222 56788999988876543221  111245899999


Q ss_pred             cCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          225 KTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       225 K~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      |.|.....+..+..+..      -+.||.+++  +|+++++|....
T Consensus       288 KlD~~~~~G~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~~~  325 (336)
T PRK14974        288 KVDADAKGGAALSIAYV------IGKPILFLG--VGQGYDDLIPFD  325 (336)
T ss_pred             eecCCCCccHHHHHHHH------HCcCEEEEe--CCCChhhcccCC
Confidence            99998776666555432      268899988  699998887643

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.08  E-value=3.3e-10  Score=108.51  Aligned_cols=140  Identities=22%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             ccccccCCCCCCCCCCcc-ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      +++++.-|+   +...+. +-++-..+|.-+.|+||||||||+|++.|.|+.+-. |++..-. +.+   +    +.+-|
T Consensus       437 e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~-~~~---~----~~lff  505 (659)
T KOG0060|consen  437 EEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPT-DGG---P----KDLFF  505 (659)
T ss_pred             eeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecc-cCC---C----CceEE
Confidence            777888888   433333 344445779999999999999999999999999866 7665322 111   1    34667


Q ss_pred             cCchhH-------HHHHhc---CCCcc--chHHHHHHHHH--HHHHh-hcccccccc----ccc--ChhHHHHHHHHHHh
Q 023913          133 LPEERI-------RAVETG---GCPHA--AIREDISINLG--PLEEL-SNLFKADLL----LCE--SGGDNLAANFSREL  191 (275)
Q Consensus       133 v~q~~~-------~~~~~~---~~~~~--~~~~~~~~~~~--~L~~l-~~~~~~d~~----~~e--S~G~~q~~~laral  191 (275)
                      +||.|-       +++...   ...-.  ...+++.+.++  .|..+ ....++|..    -.+  |+|++||+++||.+
T Consensus       506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf  585 (659)
T KOG0060|consen  506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF  585 (659)
T ss_pred             ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence            888762       111000   00000  00111111111  11111 112233311    122  99999999999999


Q ss_pred             c-CceEEEEe-CCCCC
Q 023913          192 A-DYIIYIID-VSGGD  205 (275)
Q Consensus       192 ~-~~~vlllD-~t~g~  205 (275)
                      . +|++.+|| +|+..
T Consensus       586 y~kPk~AiLDE~TSAv  601 (659)
T KOG0060|consen  586 YHKPKFAILDECTSAV  601 (659)
T ss_pred             hcCCceEEeechhhhc
Confidence            8 89999999 44443

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.08  E-value=1.1e-10  Score=100.14  Aligned_cols=32  Identities=13%  Similarity=0.102  Sum_probs=28.1

Q ss_pred             ChhHHHHHHHHHHhcCceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELADYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+|+..+++++.+|+++++| |+.++|...
T Consensus        93 s~g~~~~~~i~~~~~~p~llllDEp~~glD~~~  125 (200)
T cd03280          93 SSHMKNIARILQHADPDSLVLLDELGSGTDPVE  125 (200)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH
Confidence            99999999999887799999999 888888654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.07  E-value=6.3e-11  Score=97.67  Aligned_cols=71  Identities=23%  Similarity=0.161  Sum_probs=47.5

Q ss_pred             CceEEEEeCCCCCCcccc--ccccccccCEEEEecCCCCccchh--hHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~--~~~~i~~adiivlNK~Dl~~~~~~--~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..|+++|+++.......  ....+..+-++++||+|++...+.  +.+.+.+.+     +.|++++|+++++|++++.+
T Consensus        80 D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-----g~pvi~~sa~~~~g~~~L~~  154 (156)
T PF02421_consen   80 DLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL-----GVPVIPVSARTGEGIDELKD  154 (156)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-----TS-EEEEBTTTTBTHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-----CCCEEEEEeCCCcCHHHHHh
Confidence            567788898764221110  012246788999999999876432  345555444     57899999999999999976

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.07  E-value=8.7e-10  Score=96.33  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=62.7

Q ss_pred             cccccccChhHHHHHHH-HHHh----cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccc--hhhHHHH
Q 023913          171 ADLLLCESGGDNLAANF-SREL----ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAI--GADLAVM  239 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~l-aral----~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~--~~~~~~~  239 (275)
                      ....+++++|......- .+++    .+..++++|+..+...+.+.    ......+-++|+||+|+.+..  ...++.+
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l  163 (224)
T cd04165          84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDL  163 (224)
T ss_pred             cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHH
Confidence            34556677786543322 2233    26778999987765433221    122345668999999997651  1223333


Q ss_pred             HHHHHh------------------------cCCCCCEEEEEecCCcCHHHHhccccee
Q 023913          240 ERDALR------------------------MRDGGPFIFAQVGWVIGIIFTLSITHYI  273 (275)
Q Consensus       240 ~~~i~~------------------------~~~~~~ii~~S~~~~~g~~~l~~~~~~~  273 (275)
                      .+.++.                        .....|||.+|+.+|+|+++++..+..+
T Consensus       164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            333331                        1123589999999999999999877654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04113 Rab4 Rab4 subfamily

Probab=99.07  E-value=2.5e-10  Score=93.35  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=59.3

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cc-c--cc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KG-G--PG---ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~-~--~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+..-..+.+...   +..++++|++.......  .. .  .+   -..+-+++.||+|+........+.+...
T Consensus        52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd04113          52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF  131 (161)
T ss_pred             EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence            3455677654444444444   67888999876432111  11 0  01   1345678899999976422233444445


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+...  .+++++|++++.|++++++.+.
T Consensus       132 ~~~~~--~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         132 AQENG--LLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             HHHcC--CEEEEEECCCCCCHHHHHHHHH
Confidence            55443  7899999999999999987653

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.06  E-value=6.1e-10  Score=91.18  Aligned_cols=76  Identities=16%  Similarity=0.044  Sum_probs=46.9

Q ss_pred             CceEEEEeCCCCCCc--ccc----ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI--PRK----GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~--~~~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.....  ...    ...   ....+-++|.||+|+........+...+..+..  ..+++++|++++.|+
T Consensus        73 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i  150 (164)
T smart00173       73 EGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW--GCPFLETSAKERVNV  150 (164)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc--CCEEEEeecCCCCCH
Confidence            677888887653211  000    000   013455788999999764222333444444443  378999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       151 ~~l~~~l  157 (164)
T smart00173      151 DEAFYDL  157 (164)
T ss_pred             HHHHHHH
Confidence            9998754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.06  E-value=1.2e-09  Score=105.29  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             CCCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCc--cccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP--ILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +.-+..++.+..+..+-+.+..|..|..|..+-     ....-++-  ....+-.+--.-|+|+|+++|||||||+.|++
T Consensus       102 ~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~  181 (500)
T PRK12296        102 GEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSA  181 (500)
T ss_pred             CcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhc
Confidence            345677778888888888888888777776544     11111111  11222223356799999999999999999998


Q ss_pred             c
Q 023913          104 F  104 (275)
Q Consensus       104 ~  104 (275)
                      .
T Consensus       182 a  182 (500)
T PRK12296        182 A  182 (500)
T ss_pred             C
Confidence            6

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.06  E-value=3.3e-10  Score=92.52  Aligned_cols=52  Identities=13%  Similarity=-0.065  Sum_probs=36.8

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+-++|.||+|+.+......+......++.  +.+++++|+++++|++++++.+
T Consensus       111 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l  162 (168)
T cd04119         111 IVVVVCANKIDLTKHRAVSEDEGRLWAESK--GFKYFETSACTGEGVNEMFQTL  162 (168)
T ss_pred             ceEEEEEEchhcccccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHH
Confidence            456888999999743222344444444443  3779999999999999998864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.06  E-value=6.3e-10  Score=107.36  Aligned_cols=77  Identities=17%  Similarity=0.036  Sum_probs=50.0

Q ss_pred             CceEEEEeCCCCCCccccc-ccc---ccccCEEEEecCCCCccchhhHHHHHHHHHh---cCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG-GPG---ITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~---~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..|+++|++.+...+... ..+   ...+-+||+||+|+...  .....+.+.+.+   ..+.++++++||++|.|+++
T Consensus       295 d~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~  372 (472)
T PRK03003        295 EVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE--DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDK  372 (472)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHH
Confidence            7889999988764332211 111   23466889999999864  222223333322   12458999999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      ++..+.
T Consensus       373 lf~~i~  378 (472)
T PRK03003        373 LVPALE  378 (472)
T ss_pred             HHHHHH
Confidence            988654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.06  E-value=8.3e-10  Score=103.61  Aligned_cols=141  Identities=21%  Similarity=0.193  Sum_probs=88.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      ++++|+|++..|||||+|.|+|.     +++++..-++.++|.-..  .+                              
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-----r~AIV~D~pGvTRDr~y~--~~------------------------------   46 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-----RIAIVSDTPGVTRDRIYG--DA------------------------------   46 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-----eeeEeecCCCCccCCccc--ee------------------------------
Confidence            68999999999999999999998     788888777766552110  00                              


Q ss_pred             HHHhhcccccccccccChhH------------HHHHHHHHHhcCceEEEEeCCCCCCcccc----ccccccccCEEEEec
Q 023913          162 LEELSNLFKADLLLCESGGD------------NLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINK  225 (275)
Q Consensus       162 L~~l~~~~~~d~~~~eS~G~------------~q~~~laral~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK  225 (275)
                           ........+++++|.            ++.+..|..-+|..++++|...|......    .......+-++|+||
T Consensus        47 -----~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK  121 (444)
T COG1160          47 -----EWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNK  121 (444)
T ss_pred             -----EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEc
Confidence                 001111222222221            22233333344889999998887654332    212234677999999


Q ss_pred             CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +|-...   + +.+ ...-.+ ...+++++||..|.|+.+|++.+
T Consensus       122 ~D~~~~---e-~~~-~efysl-G~g~~~~ISA~Hg~Gi~dLld~v  160 (444)
T COG1160         122 IDNLKA---E-ELA-YEFYSL-GFGEPVPISAEHGRGIGDLLDAV  160 (444)
T ss_pred             ccCchh---h-hhH-HHHHhc-CCCCceEeehhhccCHHHHHHHH
Confidence            997633   1 111 111122 35789999999999999998743

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.05  E-value=7.8e-10  Score=94.61  Aligned_cols=153  Identities=17%  Similarity=0.102  Sum_probs=84.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L  162 (275)
                      .++|+|..++|||||++.|++.....|+....+.......+.+..+.+..-.                          ..
T Consensus         4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--------------------------~~   57 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--------------------------AH   57 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--------------------------ee
Confidence            4899999999999999999986433344332221111112222222221100                          00


Q ss_pred             HHhhcccccccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchh
Q 023913          163 EELSNLFKADLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGA  234 (275)
Q Consensus       163 ~~l~~~~~~d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~  234 (275)
                      ..+ ........+++++|......-+ +++  ++..++++|+..+...+.+.    ......+. ++++||+|+.... .
T Consensus        58 ~~~-~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~-~  135 (195)
T cd01884          58 VEY-ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE-E  135 (195)
T ss_pred             eEe-cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH-H
Confidence            011 1123345677788865543322 233  38899999988775443221    11233443 4779999997531 2


Q ss_pred             hH----HHHHHHHHhc--C-CCCCEEEEEecCCcCH
Q 023913          235 DL----AVMERDALRM--R-DGGPFIFAQVGWVIGI  263 (275)
Q Consensus       235 ~~----~~~~~~i~~~--~-~~~~ii~~S~~~~~g~  263 (275)
                      ..    +++.+.++++  + ...+|+++|+++|.+.
T Consensus       136 ~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         136 LLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            22    2344455543  2 2589999999998864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.05  E-value=1e-09  Score=91.57  Aligned_cols=96  Identities=14%  Similarity=0.068  Sum_probs=54.9

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--c----c---cccccccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--K----G---GPGITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~----~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+.+-..+.....   +..++++|.+.......  .    .   ......+-+++.||+|+........+...
T Consensus        51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~  130 (180)
T cd04137          51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK  130 (180)
T ss_pred             EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH
Confidence            34555666543333322222   67888888776432111  0    0   01123467899999998643211222233


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ...+..  ..+++++|++++.|+++++..+
T Consensus       131 ~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l  158 (180)
T cd04137         131 ELAESW--GAAFLESSARENENVEEAFELL  158 (180)
T ss_pred             HHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            333332  3689999999999999988754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.05  E-value=9.6e-11  Score=100.00  Aligned_cols=142  Identities=13%  Similarity=0.092  Sum_probs=95.6

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCC-----cEEEEeccCCCCChHHHHH----hccccCchh
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKY-----SLAAVTNDIFTKEDGEFLM----RNGALPEER  137 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-----~i~i~~~d~~~~~~~~~~~----~ig~v~q~~  137 (275)
                      .-+++..++....+||+-+++|.+|||||-+.+.|+|..+..-     +..+...|+-+..+.++++    .++++||++
T Consensus        19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP   98 (330)
T COG4170          19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP   98 (330)
T ss_pred             ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence            4466777777778899999999999999999999999877543     3445555555566666554    467899987


Q ss_pred             HHHHH---------hcCCCccchH----HH----HHHHHHHHHHhhcccc---ccccccc-ChhHHHHHHHHHHhc-Cce
Q 023913          138 IRAVE---------TGGCPHAAIR----ED----ISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       138 ~~~~~---------~~~~~~~~~~----~~----~~~~~~~L~~l~~~~~---~d~~~~e-S~G~~q~~~laral~-~~~  195 (275)
                      ...+.         .-..+.-+++    +.    ..++.+.|.+++..+-   ...+..| +.|+.|+++||.|++ +|.
T Consensus        99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr  178 (330)
T COG4170          99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence            31110         1111222221    11    1334456666655442   2334555 999999999999999 899


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      ++|.| ||+.++..
T Consensus       179 LLIADEPTN~~e~~  192 (330)
T COG4170         179 LLIADEPTNSMEPT  192 (330)
T ss_pred             eEeccCCCcccCcc
Confidence            99999 77777653

>cd04136 Rap_like Rap-like subfamily

Probab=99.04  E-value=6.8e-10  Score=90.60  Aligned_cols=94  Identities=12%  Similarity=0.012  Sum_probs=52.8

Q ss_pred             ccChhHHHHHHHHHHhc---CceEEEEeCCCCCC---cccc---c---cccccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913          176 CESGGDNLAANFSRELA---DYIIYIIDVSGGDK---IPRK---G---GPGITQADLLVINKTDLASAIGADLAVMERDA  243 (275)
Q Consensus       176 ~eS~G~~q~~~laral~---~~~vlllD~t~g~d---~~~~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i  243 (275)
                      .+++|+.+-..+.....   +..++++|.+....   ....   .   ...-..+-++|.||+|+........+...+..
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  133 (163)
T cd04136          54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA  133 (163)
T ss_pred             EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH
Confidence            44556443323333332   67788888654321   1100   0   00113455788999999754212223333333


Q ss_pred             HhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          244 LRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +..+  .+++++|++++.|+++++..+.
T Consensus       134 ~~~~--~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136         134 RQWG--CPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             HHcC--CeEEEecCCCCCCHHHHHHHHH
Confidence            3332  7899999999999999998654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.04  E-value=4e-11  Score=101.51  Aligned_cols=102  Identities=19%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             ccccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccc-hhhHHHHHH
Q 023913          170 KADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAI-GADLAVMER  241 (275)
Q Consensus       170 ~~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~-~~~~~~~~~  241 (275)
                      .....+++++|... .-...+++  +|..|+++|+..|...+...    ......+-+|++||+|+.... ....+++.+
T Consensus        69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~  148 (188)
T PF00009_consen   69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKE  148 (188)
T ss_dssp             SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred             ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHH
Confidence            34555667777543 22233333  38899999999886654321    123356678889999998431 112233332


Q ss_pred             HH-HhcC--C--CCCEEEEEecCCcCHHHHhcccc
Q 023913          242 DA-LRMR--D--GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       242 ~i-~~~~--~--~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+ +...  +  ..|++++|+++|.|+++|++.+.
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~  183 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALV  183 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHH
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHH
Confidence            22 2221  1  36899999999999999998654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.04  E-value=9e-10  Score=111.23  Aligned_cols=76  Identities=14%  Similarity=-0.070  Sum_probs=52.4

Q ss_pred             CceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++.+...+... .   .....+-+||+||+|+.+.  ...+.+++.++..   .+.++++++||++|.|+++
T Consensus       534 dvvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~  611 (712)
T PRK09518        534 ELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNR  611 (712)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHH
Confidence            6788999988775433211 1   1124677899999999865  3344454444432   3568899999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      +++..
T Consensus       612 L~~~i  616 (712)
T PRK09518        612 LAPAM  616 (712)
T ss_pred             HHHHH
Confidence            98854

>cd04157 Arl6 Arl6 subfamily

Probab=99.04  E-value=6.8e-10  Score=90.51  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=54.6

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc------ccc--ccc---ccccCEEEEecCCCCccchhhHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP------RKG--GPG---ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~------~~~--~~~---i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      .+.+++|+.+-..+.....   +..|+++|.+......      ...  ...   -..+-+||+||+|+...  ...+.+
T Consensus        48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~  125 (162)
T cd04157          48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI  125 (162)
T ss_pred             EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH
Confidence            3455566543323322222   6788889976543110      000  001   13566899999999765  223334


Q ss_pred             HHHHH--hcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDAL--RMR-DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~--~~~-~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+.  .+. ...+++++|+++++|++++++++.
T Consensus       126 ~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         126 TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            33332  111 124589999999999999998753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01863 Rab18 Rab18 subfamily

Probab=99.03  E-value=1.5e-09  Score=88.54  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---c------cccccccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---R------KGGPGITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~------~~~~~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+..-..+...++   +..++++|.+......   .      .....-..+-++|.||+|+.... ...+..
T Consensus        50 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~~  128 (161)
T cd01863          50 KLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREEG  128 (161)
T ss_pred             EEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHHH
Confidence            344556777554444444443   6788888976432111   0      01111234568999999997432 233444


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..+..  ..+++++|++++.|++++++.+
T Consensus       129 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~~  157 (161)
T cd01863         129 LKFARKH--NMLFIETSAKTRDGVQQAFEEL  157 (161)
T ss_pred             HHHHHHc--CCEEEEEecCCCCCHHHHHHHH
Confidence            4444443  5789999999999999998754

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=99.03  E-value=6.1e-10  Score=89.44  Aligned_cols=97  Identities=14%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      +..+.+++|+..-..+...++   +..++++|+........  .....      -..+-++++||+|+........+.+.
T Consensus        50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  129 (159)
T cd00154          50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQ  129 (159)
T ss_pred             EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHH
Confidence            344555666554444444444   67888999765321110  01011      12455788999999633223344554


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +....  ...+++++|++++.|++++++.+
T Consensus       130 ~~~~~--~~~~~~~~sa~~~~~i~~~~~~i  157 (159)
T cd00154         130 QFAKE--NGLLFFETSAKTGENVEELFQSL  157 (159)
T ss_pred             HHHHH--cCCeEEEEecCCCCCHHHHHHHH
Confidence            44444  35789999999999999998764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01889 SelB_euk SelB subfamily

Probab=99.03  E-value=8.3e-10  Score=93.61  Aligned_cols=100  Identities=15%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             cccccccChhHHHHH-HHHHH--hcCceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hhhHHHHHH
Q 023913          171 ADLLLCESGGDNLAA-NFSRE--LADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GADLAVMER  241 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~-~lara--l~~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~~~~~~~~  241 (275)
                      ....+.+++|+.... .+.++  .++..++++|++.+......    .......+-++++||+|+....  ....+.+.+
T Consensus        68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~  147 (192)
T cd01889          68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKK  147 (192)
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence            445566777864311 11122  23788999998876533221    1111234557899999997541  112334444


Q ss_pred             HHHhc-----CCCCCEEEEEecCCcCHHHHhccc
Q 023913          242 DALRM-----RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       242 ~i~~~-----~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+...     ....+++++|+++++|++++++.+
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l  181 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDL  181 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHH
Confidence            33322     346789999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.03  E-value=1.3e-09  Score=112.14  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             ccccccc-ChhHHHHHHHHHHhc-Cc---eEEEEe-CCCCCCccc
Q 023913          171 ADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPR  209 (275)
Q Consensus       171 ~d~~~~e-S~G~~q~~~laral~-~~---~vlllD-~t~g~d~~~  209 (275)
                      .+..+.+ |+||+||+.||++|+ +|   .++||| |++++|...
T Consensus       824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~  868 (943)
T PRK00349        824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED  868 (943)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH
Confidence            3445555 999999999999999 67   899999 899998754

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.02  E-value=1.6e-09  Score=91.35  Aligned_cols=144  Identities=18%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      .+...++|+|++|||||||++.+.+--     ....  .+ +...     .+.                           
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-----~~~~--~~-t~~~-----~~~---------------------------   54 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDR-----LAQH--QP-TQHP-----TSE---------------------------   54 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCC-----Cccc--CC-cccc-----ceE---------------------------
Confidence            445789999999999999999998741     1000  00 0000     000                           


Q ss_pred             HHHHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecC
Q 023913          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKT  226 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~  226 (275)
                           .+ ........+.+.+|+.....+.....   +..|+++|.+.......   ...      ..-..+-+||+||+
T Consensus        55 -----~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~  128 (184)
T smart00178       55 -----EL-AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKI  128 (184)
T ss_pred             -----EE-EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCc
Confidence                 00 00112334455666543322322322   67888889765321110   000      01234668899999


Q ss_pred             CCCccchhhHHHHHHHHHhcC----------CCCCEEEEEecCCcCHHHHhccc
Q 023913          227 DLASAIGADLAVMERDALRMR----------DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       227 Dl~~~~~~~~~~~~~~i~~~~----------~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      |+...  ...+++++.+.-..          +...|+++|+++++|++++++++
T Consensus       129 Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl  180 (184)
T smart00178      129 DAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL  180 (184)
T ss_pred             cccCC--CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence            98644  23455555543111          23469999999999999999876

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01864 Rab19 Rab19 subfamily

Probab=99.02  E-value=1.1e-09  Score=90.06  Aligned_cols=99  Identities=11%  Similarity=0.004  Sum_probs=58.8

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccc------cccccCEEEEecCCCCccchhhHHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ...+.+++|+.+-..+...+.   +..++++|++.......  ....      ....+-++|.||+|+........+.+.
T Consensus        53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  132 (165)
T cd01864          53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEAC  132 (165)
T ss_pred             EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHH
Confidence            344556777655444444443   67888899765421111  1101      112345789999999755322334444


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +..+. .....++++|+++++|+++++..+.
T Consensus       133 ~~~~~-~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864         133 TLAEK-NGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             HHHHH-cCCcEEEEEECCCCCCHHHHHHHHH
Confidence            44443 3335689999999999999987653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.02  E-value=6.6e-10  Score=105.60  Aligned_cols=135  Identities=19%  Similarity=0.193  Sum_probs=81.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      .++++-.|.   .+..+..-.+...+|--+.|+||||||||+|+++|.|+.+-.......-      +    ..++-|+|
T Consensus       485 enIpvItP~---~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------~----~~~mFYIP  551 (728)
T KOG0064|consen  485 ENIPVITPA---GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------R----PNNIFYIP  551 (728)
T ss_pred             ecCceeccC---cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------C----CcceEecc
Confidence            677777787   5555555555567799999999999999999999999987442222211      1    12478888


Q ss_pred             chhHHHHHhcCCCcc------ch---------HHHHHHHHH--HHHHhhccc-cccccc--cc--ChhHHHHHHHHHHhc
Q 023913          135 EERIRAVETGGCPHA------AI---------REDISINLG--PLEELSNLF-KADLLL--CE--SGGDNLAANFSRELA  192 (275)
Q Consensus       135 q~~~~~~~~~~~~~~------~~---------~~~~~~~~~--~L~~l~~~~-~~d~~~--~e--S~G~~q~~~laral~  192 (275)
                      |.|-.-   .|-.+.      +.         .+++..++.  -|+.+..+. +++.+-  .+  |+|++||+.+||.+.
T Consensus       552 QRPYms---~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y  628 (728)
T KOG0064|consen  552 QRPYMS---GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY  628 (728)
T ss_pred             CCCccC---cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence            876210   111000      00         112222222  122222222 233221  12  999999999999999


Q ss_pred             -CceEEEEe-CCCCC
Q 023913          193 -DYIIYIID-VSGGD  205 (275)
Q Consensus       193 -~~~vlllD-~t~g~  205 (275)
                       .|...+|| +|+..
T Consensus       629 HrPkyalLDEcTsAv  643 (728)
T KOG0064|consen  629 HRPKYALLDECTSAV  643 (728)
T ss_pred             cCcchhhhhhhhccc
Confidence             79999999 55543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.02  E-value=2.2e-10  Score=100.93  Aligned_cols=174  Identities=20%  Similarity=0.171  Sum_probs=86.4

Q ss_pred             EEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCccchHH---
Q 023913           86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAIRE---  153 (275)
Q Consensus        86 IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~~~~~---  153 (275)
                      |+||.||||||+.+.+...+... .++.+++-|++...       ..|-|.-.+        .+.+.+..|+..+..   
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~-------~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me   73 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVEN-------LPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCME   73 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S---------SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcc-------cccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHH
Confidence            68999999999999999998876 67899998987532       112111110        112233334333211   


Q ss_pred             ----HHHHHHHHHHHhhcccccccccccChhHHHHH-------HHHHHhc-C---ceEEEEeCCCCCCcccccc------
Q 023913          154 ----DISINLGPLEELSNLFKADLLLCESGGDNLAA-------NFSRELA-D---YIIYIIDVSGGDKIPRKGG------  212 (275)
Q Consensus       154 ----~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~-------~laral~-~---~~vlllD~t~g~d~~~~~~------  212 (275)
                          .+.+..+.++..    ..++++.+++||-..-       .|...|. +   ..|.|+|.....+. .++.      
T Consensus        74 ~l~~~~d~l~~~i~~~----~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~-~~f~s~~L~s  148 (238)
T PF03029_consen   74 YLEENIDWLDEEIEKY----EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP-SKFVSSLLLS  148 (238)
T ss_dssp             HHGGGHHHHHHHHHHH----H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc----CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh-hhHHHHHHHH
Confidence                112222222222    3488889999975432       2223333 1   46778886655442 2221      


Q ss_pred             ----ccccccCEEEEecCCCCccch-hh-----------------HHHHHHHHHhc---CCCC-CEEEEEecCCcCHHHH
Q 023913          213 ----PGITQADLLVINKTDLASAIG-AD-----------------LAVMERDALRM---RDGG-PFIFAQVGWVIGIIFT  266 (275)
Q Consensus       213 ----~~i~~adiivlNK~Dl~~~~~-~~-----------------~~~~~~~i~~~---~~~~-~ii~~S~~~~~g~~~l  266 (275)
                          ..++.+-+.|+||+|+++... ..                 ...+.+.+.++   .... +++++|+++++|++++
T Consensus       149 ~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L  228 (238)
T PF03029_consen  149 LSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEEL  228 (238)
T ss_dssp             HHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHH
T ss_pred             HHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHH
Confidence                124678899999999998310 00                 11222222222   1234 8999999999999999


Q ss_pred             hcccc
Q 023913          267 LSITH  271 (275)
Q Consensus       267 ~~~~~  271 (275)
                      +....
T Consensus       229 ~~~id  233 (238)
T PF03029_consen  229 LAAID  233 (238)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.02  E-value=1.4e-09  Score=88.90  Aligned_cols=96  Identities=13%  Similarity=-0.010  Sum_probs=57.0

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+..-....+.++   +..++++|++.......  .....      -..+-++++||+|+.+......+.+.+.
T Consensus        53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  132 (163)
T cd01860          53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY  132 (163)
T ss_pred             EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence            3445556443333333333   67888889875432111  11011      1233477899999875422344455555


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+..+  .+++++|++++.|++++++.+.
T Consensus       133 ~~~~~--~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860         133 ADENG--LLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             HHHcC--CEEEEEECCCCCCHHHHHHHHH
Confidence            55543  7799999999999999998654

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.01  E-value=1e-09  Score=90.60  Aligned_cols=54  Identities=19%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+-++|+||+|+.+.  .................+++++|++++.|++++++.+.
T Consensus       120 ~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         120 AKPVIYVLNKIDLDDA--EELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             hCCeEEEEEchhcCch--hHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence            5678999999999866  23332212233344567899999999999999988654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.01  E-value=7.6e-10  Score=99.33  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             CceEEEEeCCCCCCccc------------cccc-cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913          193 DYIIYIIDVSGGDKIPR------------KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW  259 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~------------~~~~-~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~  259 (275)
                      +.-++++|...+.+...            .+.. ....+-+||+||+|+.+.   +...+.+..+.+ +...|+++||+.
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~l-q~~~V~pvsA~~  351 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRL-QNPHVVPVSAKS  351 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHc-CCCcEEEeeecc
Confidence            45677888666533211            1111 124567999999998644   222222222222 344799999999


Q ss_pred             CcCHHHHhccc
Q 023913          260 VIGIIFTLSIT  270 (275)
Q Consensus       260 ~~g~~~l~~~~  270 (275)
                      ++|++++++-+
T Consensus       352 ~egl~~ll~~l  362 (366)
T KOG1489|consen  352 GEGLEELLNGL  362 (366)
T ss_pred             ccchHHHHHHH
Confidence            99999998754

>cd01894 EngA1 EngA1 subfamily

Probab=99.01  E-value=1.7e-09  Score=87.30  Aligned_cols=72  Identities=21%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|+.........    .......+-++|+||+|+...  ...   ...+..+. ..+++++|++++.|++++++
T Consensus        78 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~---~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~  151 (157)
T cd01894          78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE--EDE---AAEFYSLG-FGEPIPISAEHGRGIGDLLD  151 (157)
T ss_pred             CEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh--HHH---HHHHHhcC-CCCeEEEecccCCCHHHHHH
Confidence            678888897654322111    111224566899999999875  221   22333332 34789999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       152 ~l  153 (157)
T cd01894         152 AI  153 (157)
T ss_pred             HH
Confidence            54

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.00  E-value=1.6e-09  Score=88.54  Aligned_cols=95  Identities=13%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc-------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG-------ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      +.+++|+.+.-.+.....   +..++++|.+......  ......       -..+-+|++||+|+........+...+.
T Consensus        54 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~  133 (164)
T cd04145          54 ILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL  133 (164)
T ss_pred             EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH
Confidence            345566544333333333   6788888876532111  000001       1335588999999975422233344444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+..  +.+++++|++++.|++++++.+.
T Consensus       134 ~~~~--~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145         134 ARKL--KIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             HHHc--CCcEEEeeCCCCCCHHHHHHHHH
Confidence            4443  46899999999999999987654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.00  E-value=1.2e-09  Score=89.10  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             ccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHH
Q 023913          174 LLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       174 ~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      .+.+++|+.+...+.+. +.  +..|+++|.+.......   ..      ...-..+-++|+||+|+...  ...+++..
T Consensus        47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~  124 (160)
T cd04156          47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITR  124 (160)
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHH
Confidence            34446665443332222 22  67788999765431110   00      00124566899999998654  22334443


Q ss_pred             HHH--hcC--CCCCEEEEEecCCcCHHHHhccc
Q 023913          242 DAL--RMR--DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       242 ~i~--~~~--~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+.  .+.  ...+++++||++++|+++++..+
T Consensus       125 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i  157 (160)
T cd04156         125 RFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL  157 (160)
T ss_pred             HcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence            332  221  23468999999999999998765

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.00  E-value=3.2e-09  Score=106.43  Aligned_cols=168  Identities=21%  Similarity=0.197  Sum_probs=95.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI  155 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~  155 (275)
                      .+|++++|+||||+||||++..|++.+... |  +|.++..|....         |.+.|-. .+-...+.+..... +.
T Consensus       183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri---------gA~eQL~-~~a~~~gvpv~~~~-~~  251 (767)
T PRK14723        183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI---------GALEQLR-IYGRILGVPVHAVK-DA  251 (767)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch---------HHHHHHH-HHHHhCCCCccccC-CH
Confidence            458899999999999999999999987543 4  688877765322         2211110 11111222221111 11


Q ss_pred             HHHHHHHHHhhcccccccccccChhHHHH----HHHHHHhc-----CceEEEEeCCCCCCcccccccccc-----ccCEE
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGDNLA----ANFSRELA-----DYIIYIIDVSGGDKIPRKGGPGIT-----QADLL  221 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~----~~laral~-----~~~vlllD~t~g~d~~~~~~~~i~-----~adii  221 (275)
                      ....+.+..+.   ..|.+++++.|..++    ......+.     .-.++++|++...+........|+     ..+-+
T Consensus       252 ~~l~~al~~~~---~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~gl  328 (767)
T PRK14723        252 ADLRFALAALG---DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGC  328 (767)
T ss_pred             HHHHHHHHHhc---CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEE
Confidence            22234555432   458999998884321    11111111     357889998865332221112222     24679


Q ss_pred             EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHhc
Q 023913          222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTLS  268 (275)
Q Consensus       222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~~  268 (275)
                      |++|.|-....+..+..+    ..  -+.||.+++  +|+.+ +++..
T Consensus       329 IlTKLDEt~~~G~iL~i~----~~--~~lPI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        329 IITKLDEATHLGPALDTV----IR--HRLPVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             EEeccCCCCCccHHHHHH----HH--HCCCeEEEe--cCCCChhhccc
Confidence            999999887755554433    22  267888887  58888 55543

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.00  E-value=2e-09  Score=87.36  Aligned_cols=52  Identities=23%  Similarity=0.101  Sum_probs=36.5

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+-+||.||+|+.... ...+.+.+..+..  +.+++++|++++.|+++++..+.
T Consensus       107 ~piivv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138         107 VPMVLVGNKCDLAART-VSSRQGQDLAKSY--GIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             CCEEEEEECcccccce-ecHHHHHHHHHHh--CCeEEEecCCCCCCHHHHHHHHH
Confidence            4558899999997642 2233333333333  45899999999999999988654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.00  E-value=1.8e-09  Score=102.51  Aligned_cols=73  Identities=14%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             CCcceeecCCCCccccCCCCCCCccccccCCC-----CCCCCCCcccc-cccc-CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPPILS-RNFN-ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~-~~~~-~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-+..+.+|..+..+-+.+..|..+..|..+-     ......+-... ..+. +--.-|+|+|.++|||||||+.|++.
T Consensus       102 ~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~a  181 (424)
T PRK12297        102 EVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNA  181 (424)
T ss_pred             cEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcC
Confidence            44667777777777788888888777776543     10111110101 1111 12447999999999999999999986

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.99  E-value=1.6e-09  Score=93.27  Aligned_cols=103  Identities=15%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             cccccccChhHHHHH-HHHHHh--cCceEEEEeCCCCCCcccc----ccccccccC-EEEEecCCCCccchhhH----HH
Q 023913          171 ADLLLCESGGDNLAA-NFSREL--ADYIIYIIDVSGGDKIPRK----GGPGITQAD-LLVINKTDLASAIGADL----AV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~-~laral--~~~~vlllD~t~g~d~~~~----~~~~i~~ad-iivlNK~Dl~~~~~~~~----~~  238 (275)
                      ....+.+++|+.... .+..++  ++..|+++|++.+......    .......+. ++|+||+|+........    +.
T Consensus        77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            345667788865422 122233  2788999998876432221    111123344 44799999975321222    23


Q ss_pred             HHHHHHhcC-CCCCEEEEEecCCcCHHHHhccccee
Q 023913          239 MERDALRMR-DGGPFIFAQVGWVIGIIFTLSITHYI  273 (275)
Q Consensus       239 ~~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~~~  273 (275)
                      +.+.++.+. +..+++++|++++.|+++......++
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~~~~~w~  192 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVSRSENMPWY  192 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCccCCCCCCCC
Confidence            333344444 34679999999999998765544443

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04175 Rap1 Rap1 subgroup

Probab=98.99  E-value=2.1e-09  Score=88.23  Aligned_cols=95  Identities=12%  Similarity=0.024  Sum_probs=53.6

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---ccc---c---cccccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRK---G---GPGITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      +.+++|+.+-..+.....   +..++++|.+.....   ...   .   ...-..+-++|.||+|+........+...+.
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  132 (164)
T cd04175          53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL  132 (164)
T ss_pred             EEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHH
Confidence            344556533323322222   677888886543211   100   0   0111345688999999975422222333333


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .++.  ..+++++||+++.|+++++.++.
T Consensus       133 ~~~~--~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175         133 ARQW--GCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             HHHh--CCEEEEeeCCCCCCHHHHHHHHH
Confidence            3333  26899999999999999988654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.99  E-value=1.6e-09  Score=88.32  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc-----ccccCEEEEecCCCCccchhhHHHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG-----ITQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~-----i~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      +..+.+++|+..-..+.....   +..++++|.+......  ......     -..+-++|.||+|+........+++.+
T Consensus        52 ~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~  131 (162)
T cd04106          52 RLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEA  131 (162)
T ss_pred             EEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHH
Confidence            344555666544334433333   6778888865432111  111111     134568899999997653223344444


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+.+  +.+++++|++++.|++++++.+.
T Consensus       132 ~~~~~--~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106         132 LAKRL--QLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             HHHHc--CCeEEEEECCCCCCHHHHHHHHH
Confidence            44443  35899999999999999987654

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.99  E-value=2.2e-09  Score=103.00  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc--chH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIR  152 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~--~~~  152 (275)
                      ..+|.+++|+||||+||||++..|++.+... |  +|.++..|.......+-++          .+-...+.+..  ...
T Consensus       253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr----------~~AeilGVpv~~~~~~  322 (484)
T PRK06995        253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLR----------IYGKILGVPVHAVKDA  322 (484)
T ss_pred             ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHH----------HHHHHhCCCeeccCCc
Confidence            3468999999999999999999999987654 4  5777776653221111011          01111122211  111


Q ss_pred             HHHHHHHHHHHHhhcccccccccccChhHHHHHH---HHHHhc-Cc-----eEEEEeCCCCCCccccccccc--cccCEE
Q 023913          153 EDISINLGPLEELSNLFKADLLLCESGGDNLAAN---FSRELA-DY-----IIYIIDVSGGDKIPRKGGPGI--TQADLL  221 (275)
Q Consensus       153 ~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~---laral~-~~-----~vlllD~t~g~d~~~~~~~~i--~~adii  221 (275)
                      .+...   .+.   .....+.+++++.|..|+..   ....++ +.     .+++||++.+.+........+  ...+-+
T Consensus       323 ~Dl~~---aL~---~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~~~g~  396 (484)
T PRK06995        323 ADLRL---ALS---ELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGC  396 (484)
T ss_pred             hhHHH---HHH---hccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCCCCEE
Confidence            11111   222   22245788888888655432   112222 22     688999876643322111111  124578


Q ss_pred             EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHhc
Q 023913          222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTLS  268 (275)
Q Consensus       222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~~  268 (275)
                      |+||.|-....+.-+..    +.+.  +.||.+++  +|+.+ ++|..
T Consensus       397 IlTKlDet~~~G~~l~i----~~~~--~lPI~yvt--~GQ~VPeDL~~  436 (484)
T PRK06995        397 ILTKLDEAASLGGALDV----VIRY--KLPLHYVS--NGQRVPEDLHL  436 (484)
T ss_pred             EEeCCCCcccchHHHHH----HHHH--CCCeEEEe--cCCCChhhhcc
Confidence            99999987664333332    2232  57788887  58888 55543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.98  E-value=2.7e-09  Score=86.67  Aligned_cols=55  Identities=18%  Similarity=0.112  Sum_probs=38.9

Q ss_pred             cccCEEEEecCCCCccchhhHH----HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913          216 TQADLLVINKTDLASAIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~----~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      ..+.++++||+|+.+.  ....    .+...++...+..+++++|++++.+++++++.+..
T Consensus       110 ~~~vi~v~nK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         110 GIPFLVVLTKADKLKK--SELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             CCCEEEEEEchhcCCh--HHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHH
Confidence            4566889999999755  2222    22333332356678999999999999999987654

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.98  E-value=7.2e-10  Score=94.36  Aligned_cols=148  Identities=15%  Similarity=0.046  Sum_probs=80.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH--Hhcc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL--MRNG  131 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~--~~ig  131 (275)
                      +.-.|.|+.   ..+...+-+...+.|....++|.|||||||||++|+|-.--. |.|.+.+.+...  +..+.  ....
T Consensus        17 sgl~f~y~~---~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFh--Dt~l~~Sgdl~   91 (291)
T KOG2355|consen   17 SGLQFKYKV---SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFH--DTSLESSGDLS   91 (291)
T ss_pred             eccEEeccc---CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccc--cccccccCcee
Confidence            334566666   455555666666779999999999999999999999964444 778888776543  11111  1122


Q ss_pred             ccCchhHHHHHhcCCCc--cch--H--------HHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          132 ALPEERIRAVETGGCPH--AAI--R--------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       132 ~v~q~~~~~~~~~~~~~--~~~--~--------~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      |+-.+=..+....+...  ..+  .        .+..+..+.+.-+.  -......-. |.||++|+.|+..|+ .-+|+
T Consensus        92 YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLD--Idl~WRmHkvSDGqrRRVQicMGLL~PfkVL  169 (291)
T KOG2355|consen   92 YLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILD--IDLRWRMHKVSDGQRRRVQICMGLLKPFKVL  169 (291)
T ss_pred             EecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhhee--ccceEEEeeccccchhhhHHHHhcccceeEE
Confidence            22111000000111000  000  0        00111111111111  111222222 999999999999999 56899


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      +|| .|--+|+.+
T Consensus       170 LLDEVTVDLDVlA  182 (291)
T KOG2355|consen  170 LLDEVTVDLDVLA  182 (291)
T ss_pred             EeeeeEeehHHHH
Confidence            999 555556544

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.98  E-value=1.1e-09  Score=89.43  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=57.1

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+..-..+.+..+   +..|+++|++.......  .....      -..+-++|.||+|+........+.+.+.
T Consensus        52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~  131 (164)
T smart00175       52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF  131 (164)
T ss_pred             EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence            3445666543333333333   67888999765321111  01001      1356788999999876422344445554


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .++.  +.+++++|+++++|+++++..+
T Consensus       132 ~~~~--~~~~~e~Sa~~~~~i~~l~~~i  157 (164)
T smart00175      132 AEEH--GLPFFETSAKTNTNVEEAFEEL  157 (164)
T ss_pred             HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            4443  4679999999999999998754

Rab GTPases are implicated in vesicle trafficking.

>PRK04213 GTP-binding protein; Provisional

Probab=98.98  E-value=5.6e-09  Score=88.86  Aligned_cols=55  Identities=11%  Similarity=-0.079  Sum_probs=35.3

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCC----CCCEEEEEecCCcCHHHHhcccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRD----GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~----~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+-+||+||+|+........+++.+.+....+    ..+++++||++| |++++++.+.
T Consensus       130 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~  188 (201)
T PRK04213        130 GIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIR  188 (201)
T ss_pred             CCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHH
Confidence            456689999999976521223333333321001    136899999999 9999988654

>cd01862 Rab7 Rab7 subfamily

Probab=98.98  E-value=1.2e-09  Score=89.93  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=54.5

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc--ccc----ccccc------cccCEEEEecCCCCccchhhHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI--PRK----GGPGI------TQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~--~~~----~~~~i------~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      +.+++|+..-..+....+   +..|+++|+......  ...    .....      ..+-++|+||+|+..+.....+.+
T Consensus        53 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  132 (172)
T cd01862          53 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKA  132 (172)
T ss_pred             EEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHH
Confidence            344555443333333333   677888887644211  000    00001      345578899999984321233444


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ....+. ....+++++|++++.|++++++..
T Consensus       133 ~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~i  162 (172)
T cd01862         133 QQWCQS-NGNIPYFETSAKEAINVEQAFETI  162 (172)
T ss_pred             HHHHHH-cCCceEEEEECCCCCCHHHHHHHH
Confidence            444433 334689999999999999998754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK09866 hypothetical protein; Provisional

Probab=98.97  E-value=4.1e-09  Score=103.05  Aligned_cols=101  Identities=13%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             cccccccChhHH---HH-H--HHHHHhc--CceEEEEeCCCCCCcccc----cccccc--ccCEEEEecCCCCccchhhH
Q 023913          171 ADLLLCESGGDN---LA-A--NFSRELA--DYIIYIIDVSGGDKIPRK----GGPGIT--QADLLVINKTDLASAIGADL  236 (275)
Q Consensus       171 ~d~~~~eS~G~~---q~-~--~laral~--~~~vlllD~t~g~d~~~~----~~~~i~--~adiivlNK~Dl~~~~~~~~  236 (275)
                      .+.++++|+|..   ++ +  .+..++.  +..++++|++.+......    ......  .+-++|+||+|+.+......
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk  309 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA  309 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence            456677788862   12 1  2234444  788899998764322111    111122  26678999999975422234


Q ss_pred             HHHHHHHHh-----cCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          237 AVMERDALR-----MRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       237 ~~~~~~i~~-----~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+.+.+..     ..+...||++||+.|.+++++++.+.
T Consensus       310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~  349 (741)
T PRK09866        310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELA  349 (741)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHH
Confidence            555555432     33567899999999999999987643

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.97  E-value=3.7e-09  Score=90.24  Aligned_cols=95  Identities=19%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cc----------ccccccccCEEEEecCCCCccchhhHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RK----------GGPGITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~----------~~~~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      +.+++|+.+--.+.+.+.   +..|+++|.+......  ..          ....-..+-+||.||+|+.+......+.+
T Consensus        54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~  133 (201)
T cd04107          54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM  133 (201)
T ss_pred             EEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence            344555433333333333   5778888865432110  00          00012345688999999974322344555


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..+.. ...+++++|+++++|+++++..+
T Consensus       134 ~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l  163 (201)
T cd04107         134 DQFCKEN-GFIGWFETSAKEGINIEEAMRFL  163 (201)
T ss_pred             HHHHHHc-CCceEEEEeCCCCCCHHHHHHHH
Confidence            5555543 23679999999999999998764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01890 LepA LepA subfamily

Probab=98.97  E-value=2e-09  Score=89.51  Aligned_cols=98  Identities=20%  Similarity=0.099  Sum_probs=57.2

Q ss_pred             ccccccChhHHHHHHHH-HHhc--CceEEEEeCCCCCCcccc--c--cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913          172 DLLLCESGGDNLAANFS-RELA--DYIIYIIDVSGGDKIPRK--G--GPGITQADLLVINKTDLASAIGADLAVMERDAL  244 (275)
Q Consensus       172 d~~~~eS~G~~q~~~la-ral~--~~~vlllD~t~g~d~~~~--~--~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~  244 (275)
                      ...+.+++|+..-.... +.+.  +..|+++|++.+......  .  ......+-++|+||+|+....  . ....+.+.
T Consensus        68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~--~-~~~~~~~~  144 (179)
T cd01890          68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD--P-ERVKQQIE  144 (179)
T ss_pred             EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC--H-HHHHHHHH
Confidence            34456677765432222 2222  788999998765432211  0  011234568899999986531  1 11222222


Q ss_pred             hcC--CCCCEEEEEecCCcCHHHHhcccce
Q 023913          245 RMR--DGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       245 ~~~--~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      +..  +..+++++|+++|+|++++++.+..
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (179)
T cd01890         145 DVLGLDPSEAILVSAKTGLGVEDLLEAIVE  174 (179)
T ss_pred             HHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence            222  2346999999999999999886643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04110 Rab35 Rab35 subfamily

Probab=98.97  E-value=3.2e-09  Score=90.65  Aligned_cols=95  Identities=16%  Similarity=0.108  Sum_probs=55.3

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDA  243 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i  243 (275)
                      .+.+++|+.+--.+.....   +..++++|++.......  .....+     ..+-+||.||+|+........+...+..
T Consensus        58 ~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~  137 (199)
T cd04110          58 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA  137 (199)
T ss_pred             EEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH
Confidence            3445666543323333332   56788899875432111  000111     2455889999999764222334444444


Q ss_pred             HhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          244 LRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..  +.+++++|++++.|++++++.+
T Consensus       138 ~~~--~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110         138 GQM--GISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             HHc--CCEEEEEECCCCcCHHHHHHHH
Confidence            443  3779999999999999998764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.97  E-value=2.6e-09  Score=89.07  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=55.6

Q ss_pred             ccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccc---ccc-----cc-ccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPR---KGG-----PG-ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~---~~~-----~~-i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+..--..... +.  +..|+++|.+.......   ...     .. -..+-+|++||+|+...  ...+++
T Consensus        60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i  137 (174)
T cd04153          60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEI  137 (174)
T ss_pred             EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHH
Confidence            3444556665432222222 22  67888899765432110   000     01 12455889999998654  233444


Q ss_pred             HHHHHh--c-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDALR--M-RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~~--~-~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+..  . +...+++++||++++|+++++++++
T Consensus       138 ~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         138 SESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             HHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence            444431  1 2245799999999999999998764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.97  E-value=3e-09  Score=89.16  Aligned_cols=72  Identities=14%  Similarity=0.025  Sum_probs=45.7

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccc--hhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~--~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|+.........    .......+-++++||+|+.+..  ....+.+++.++......+++++|+++|+|++
T Consensus       102 ~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       102 KGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            467888887664332221    1112245668899999998651  12345555556555445689999999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.96  E-value=2.4e-09  Score=87.24  Aligned_cols=97  Identities=16%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--c----cccc---cccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--R----KGGP---GITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~----~~~~---~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+.+|+...-.+.+.+.   +..++++|++......  .    ....   .-..+-++++||+|+...  ...+++
T Consensus        44 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~~~  121 (158)
T cd00878          44 SFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVSEL  121 (158)
T ss_pred             EEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc--cCHHHH
Confidence            344455556543333333333   6788899987652111  0    0001   113455788999999875  344555


Q ss_pred             HHHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRM---RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+.+...   ....+++++|++++.|++++++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878         122 IEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             HHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            5555432   234689999999999999998754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.96  E-value=3.9e-09  Score=86.74  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccc---cc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGG---PG---ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~---~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+.+-..+.....   +..|+++|.+.......  ...   ..   -..+-++|.||+|+........+.....
T Consensus        54 ~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~  133 (166)
T cd01869          54 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF  133 (166)
T ss_pred             EEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence            3445666544333444443   67888889765321110  000   01   1245688999999865422233444444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..  +.+++++|+++++|+++++..+
T Consensus       134 ~~~~--~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869         134 ADEL--GIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             HHHc--CCeEEEEECCCCcCHHHHHHHH
Confidence            4333  5689999999999999998754

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04151 Arl1 Arl1 subfamily

Probab=98.95  E-value=1.6e-09  Score=88.53  Aligned_cols=98  Identities=16%  Similarity=0.112  Sum_probs=56.1

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---cccc---c--c-ccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---RKGG---P--G-ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~~~~---~--~-i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+..--.+.+...   +..|+++|.+......   ....   .  . -..+-+||+||+|+...  ...+++
T Consensus        44 ~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~i  121 (158)
T cd04151          44 KFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--LSEAEI  121 (158)
T ss_pred             EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--CCHHHH
Confidence            344556677543223333322   6788889976532110   1010   0  0 13566899999999754  223344


Q ss_pred             HHHHHhcC---CCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+....   ...+++++|++++.|++++++.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         122 SEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             HHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            33332211   124699999999999999998653

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00876 Ras Ras family

Probab=98.94  E-value=5.9e-09  Score=84.38  Aligned_cols=76  Identities=18%  Similarity=0.044  Sum_probs=48.4

Q ss_pred             CceEEEEeCCCCCCccc--cc----ccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--KG----GPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~----~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|++.......  ..    ...   -..+-++|+||+|+........+.+.+..+...  .+++++|++++.|+
T Consensus        72 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i  149 (160)
T cd00876          72 DGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG--CPFIETSAKDNINI  149 (160)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC--CcEEEeccCCCCCH
Confidence            67788888765421110  00    000   134558899999998642233445555555443  78999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       150 ~~l~~~l  156 (160)
T cd00876         150 DEVFKLL  156 (160)
T ss_pred             HHHHHHH
Confidence            9998754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04127 Rab27A Rab27a subfamily

Probab=98.94  E-value=2.5e-09  Score=89.07  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=58.1

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc-------cccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI-------TQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i-------~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+.+.-.+.+...   +..|+++|++.......  .....+       ..+-++|.||+|+.+......+.+.
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~  144 (180)
T cd04127          65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK  144 (180)
T ss_pred             EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence            34555677665444444444   57788899765321111  000001       2345788999999754222334444


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +..++.  +.+++++|++++.|++++++.+.
T Consensus       145 ~~~~~~--~~~~~e~Sak~~~~v~~l~~~l~  173 (180)
T cd04127         145 ALADKY--GIPYFETSAATGTNVEKAVERLL  173 (180)
T ss_pred             HHHHHc--CCeEEEEeCCCCCCHHHHHHHHH
Confidence            444444  36899999999999999988653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.94  E-value=2.4e-09  Score=84.25  Aligned_cols=98  Identities=18%  Similarity=0.139  Sum_probs=58.0

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---------cccccccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---------~~~~~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+.+|+...........   +..++++|.+.......         ........+-++++||+|+.......... 
T Consensus        46 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-  124 (157)
T cd00882          46 KLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-  124 (157)
T ss_pred             EEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-
Confidence            444555666543333322222   67788888776532111         11122345678999999998663222111 


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ...........+++++|++.+.|++++++++
T Consensus       125 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882         125 LAEQLAKELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             HHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence            1222334457899999999999999998764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04114 Rab30 Rab30 subfamily

Probab=98.94  E-value=3.2e-09  Score=87.32  Aligned_cols=77  Identities=14%  Similarity=0.010  Sum_probs=46.6

Q ss_pred             CceEEEEeCCCCCCc---ccccc--cc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKI---PRKGG--PG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~--~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|++.....   .....  ..   -..+-++|.||+|+..... ....+...+.+..+ .+++++|++++.|++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~-i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  158 (169)
T cd04114          81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-VSQQRAEEFSDAQD-MYYLETSAKESDNVE  158 (169)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-cCHHHHHHHHHHcC-CeEEEeeCCCCCCHH
Confidence            677888887643211   11000  11   1234588999999875421 11223334444444 779999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++...
T Consensus       159 ~l~~~i~  165 (169)
T cd04114         159 KLFLDLA  165 (169)
T ss_pred             HHHHHHH
Confidence            9998643

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04123 Rab21 Rab21 subfamily

Probab=98.94  E-value=5.2e-09  Score=84.87  Aligned_cols=95  Identities=17%  Similarity=0.078  Sum_probs=55.7

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cc---ccc---ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KG---GPG---ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~---~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+..--.+.....   +..++++|.+.......  ..   ..+   ...+-++|+||+|+........+.+.+.
T Consensus        52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~  131 (162)
T cd04123          52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY  131 (162)
T ss_pred             EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            3444566433333333332   67788889765432110  00   001   1356688899999975422233444444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..  +.+++++|++++.|++++++++
T Consensus       132 ~~~~--~~~~~~~s~~~~~gi~~~~~~l  157 (162)
T cd04123         132 AKSV--GAKHFETSAKTGKGIEELFLSL  157 (162)
T ss_pred             HHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence            4443  4678999999999999999875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04149 Arf6 Arf6 subfamily

Probab=98.94  E-value=2.5e-09  Score=88.86  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=57.2

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc---ccccc-----cc-cccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP---RKGGP-----GI-TQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~---~~~~~-----~i-~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+.+.-.+.+...   +..|+++|.+......   .....     .+ ..+-+||.||+|+...  ...++++
T Consensus        55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~  132 (168)
T cd04149          55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQ  132 (168)
T ss_pred             EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHH
Confidence            44455777654433433332   6789999977532111   10101     11 2456788999998654  2334455


Q ss_pred             HHHH--hcCC-CCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDAL--RMRD-GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~--~~~~-~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+.  ++.+ ..+++++||++|+|++++++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         133 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             HHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence            4432  2222 34689999999999999998753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.94  E-value=3e-09  Score=98.92  Aligned_cols=71  Identities=21%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             CceEEEEeCCCCCCccc-----cccccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-----~~~~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......     .....+   ..+-++|+||+|+.+.  ..+..+    ..  ...+++++|++++.|++
T Consensus       270 Dlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~~~----~~--~~~~~i~iSAktg~GI~  341 (351)
T TIGR03156       270 DLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIERL----EE--GYPEAVFVSAKTGEGLD  341 (351)
T ss_pred             CEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHHHH----Hh--CCCCEEEEEccCCCCHH
Confidence            67888999765432111     111112   3455899999999764  222211    11  22468999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       342 eL~~~I~  348 (351)
T TIGR03156       342 LLLEAIA  348 (351)
T ss_pred             HHHHHHH
Confidence            9987654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=5.5e-10  Score=115.57  Aligned_cols=137  Identities=20%  Similarity=0.159  Sum_probs=101.4

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCC----CCcEEEEeccCCCCChHHHHHhccccCchhHHH----
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA----  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~----  140 (275)
                      +.+.+.+...++|+.+.++||+||||||||+.|+|-+..    .|+|.++|.+..+..+   .+.++|++|...-.    
T Consensus       129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT  205 (1391)
T KOG0065|consen  129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT  205 (1391)
T ss_pred             eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence            455566667788999999999999999999999997663    2689999988876544   46689999886421    


Q ss_pred             ----HHh-cCCCcc-------chHHHH-HHHHHHHHHhhccccccccccc------ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          141 ----VET-GGCPHA-------AIREDI-SINLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       141 ----~~~-~~~~~~-------~~~~~~-~~~~~~L~~l~~~~~~d~~~~e------S~G~~q~~~laral~-~~~vlllD  200 (275)
                          +.+ ..|...       .-++.. +.....++.+++....|.+++.      |||||+|+.++..++ .+.++..|
T Consensus       206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D  285 (1391)
T KOG0065|consen  206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD  285 (1391)
T ss_pred             EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence                111 222221       111111 1344577888888877877766      999999999999998 89999999


Q ss_pred             -CCCCCCcc
Q 023913          201 -VSGGDKIP  208 (275)
Q Consensus       201 -~t~g~d~~  208 (275)
                       +++|+|..
T Consensus       286 e~t~GLDSs  294 (1391)
T KOG0065|consen  286 EITRGLDSS  294 (1391)
T ss_pred             cccccccHH
Confidence             89999854

>cd01861 Rab6 Rab6 subfamily

Probab=98.93  E-value=1.3e-09  Score=88.94  Aligned_cols=96  Identities=16%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--cccccc----c--cccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPG----I--TQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~----i--~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+..--.+.+.++   +..++++|.+......  .....+    .  ..+-++++||+|+........+.....
T Consensus        52 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd01861          52 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK  131 (161)
T ss_pred             EEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence            3455566544333333333   6778888875432111  111111    1  256688999999964422233444444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+..  +.+++++|++++.|+++++....
T Consensus       132 ~~~~--~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861         132 AKEL--NAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             HHHh--CCEEEEEeCCCCCCHHHHHHHHH
Confidence            4443  47899999999999999988654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
2hf9_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		2e-15
2hf8_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		2e-14
2wsm_A	221	Crystal Structure Of Hydrogenase Maturation Factor		7e-10

>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form Length = 226

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E + ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
           H     D  +    LE+L NL + DLL  E+ G+ +  A+F       I+ I    G D 
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM 246
           I +   PGI + ADL+VINK DLA A+GAD+  ME DA R+
Sbjct: 156 IEKH--PGIMKTADLIVINKIDLADAVGADIKKMENDAKRI 194

>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form, In Complex With Zinc Length = 226

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E   ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
           H     D  +    LE+L NL + DLL  E+ G+ +  A+F       I+ I    G D 
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRM 246
           I +   PGI + ADL+VINK DLA A+GAD+   E DA R+
Sbjct: 156 IEKH--PGIXKTADLIVINKIDLADAVGADIKKXENDAKRI 194

>pdb|2WSM|A Chain A, Crystal Structure Of Hydrogenase Maturation Factor Hypb From Archaeoglobus Fulgidus Length = 221

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           V I G +G+GKT L+    + + ++  + A+  D+ +K D E + R G   E    A+ T
Sbjct: 33  VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAE----AIST 88
Query: 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD-YIIYIIDVS 202
           G   H     D  +    L++ S+    DLLL E+ G NL      +L + Y + ++ V+
Sbjct: 89  GKECHL----DAHMIYHRLKKFSD---CDLLLIENVG-NLICPVDFDLGENYRVVMVSVT 140
Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA 243
            GD +  K       ADL+VINK  LA A+GAD+  M+ DA
Sbjct: 141 EGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
2hf9_A	226	Probable hydrogenase nickel incorporation protein	3e-84
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	2e-82
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	1e-07
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	2e-05
1pq4_A	291	Periplasmic binding protein component of AN ABC T	2e-04
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	4e-04

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226

 Score =  250 bits (641), Expect = 3e-84
 Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 20/198 (10%)

Query: 71  PILSRN----------FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119
            IL  N           N+         G +G+GKT L+  L   L+DKY +A +  D+ 
Sbjct: 17  DILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76

Query: 120 TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 179
            K D E + ++GA    ++  + TG   H     D  +    LE+L NL + DLL  E+ 
Sbjct: 77  AKFDAERMEKHGA----KVVPLNTGKECHL----DAHLVGHALEDL-NLDEIDLLFIENV 127

Query: 180 GDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 239
           G+ +            I +I  + GD    K    +  ADL+VINK DLA A+GAD+  M
Sbjct: 128 GNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKM 187

Query: 240 ERDALRMRDGGPFIFAQV 257
           E DA R+      +   +
Sbjct: 188 ENDAKRINPDAEVVLLSL 205

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221

 Score =  246 bits (630), Expect = 2e-82
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 75  RNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
               E     V I G +G+GKT L+    + + ++  + A+  D+ +K D E + R G  
Sbjct: 23  EALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI- 81

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD 193
              +  A+ TG   H     D  +    L++ S+    DLLL E+ G+ +         +
Sbjct: 82  ---KAEAISTGKECHL----DAHMIYHRLKKFSDC---DLLLIENVGNLICPVDFDLGEN 131

Query: 194 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI 253
           Y + ++ V+ GD +  K       ADL+VINK  LA A+GAD+  M+ DA  +      I
Sbjct: 132 YRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKII 191

Query: 254 FAQV 257
              +
Sbjct: 192 EMDL 195

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 23/202 (11%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
            AF VG+ GP G GK+  +    K L ++ + L+ +  D  +   G      G+L  ++ 
Sbjct: 73  LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG------GSLLGDKT 126

Query: 139 RAVETGGCPHAAIRED--------ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRE 190
           R  E     +A IR          ++        L      D++L E+ G   +     +
Sbjct: 127 RMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVAD 186

Query: 191 LADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALRMRD 248
           + D  + ++  +GGD++   K G  I  ADL+ + K+D    + A     E   AL++  
Sbjct: 187 MVDMFVLLLPPAGGDELQGIKRGI-IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLR 245

Query: 249 GGPFIFAQVGWVIGIIFTLSIT 270
                     W   +I   + +
Sbjct: 246 K-----RSQVWKPKVIRISARS 262

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 43/202 (21%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
            A  VGI G  G GK+  + AL   L ++ + +A +  D  +   G      G++  ++ 
Sbjct: 78  NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG------GSILGDKT 131

Query: 139 RAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRE 190
           R       P+A IR          ++        L      D++L E+ G   +      
Sbjct: 132 RMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVAN 191

Query: 191 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVME-RDALRMRD 248
           + D  + +     GD++   K G  +  AD++V+NK D      A LA  E   A+R+  
Sbjct: 192 MVDTFVLLTLARTGDQLQGIKKGV-LELADIVVVNKADGEHHKEARLAARELSAAIRLIY 250

Query: 249 GGPFIFAQVGWVIGIIFTLSIT 270
                  +  W   ++   ++ 
Sbjct: 251 P-----REALWRPPVLTMSAVE 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 42/280 (15%), Positives = 76/280 (27%), Gaps = 70/280 (25%)

Query: 17  HDNDHDHTHEKNHGDSTATSWVGSDGRVYHS-HDGLAPHSHEPIYSPGYFSRRAPPILS- 74
              ++         +    S      R+Y    D L  ++   +++  Y   R  P L  
Sbjct: 87  LRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRL--YNDNQVFAK-YNVSRLQPYLKL 140

Query: 75  RN--FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF------TKEDGE 125
           R      R A  V I G +G+GKT + L +C           +   IF            
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 126 FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL-EELSNLFKA-----DLL-LCES 178
            L     L    +  ++      +    +I + +  +  EL  L K+      LL L   
Sbjct: 198 VLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--- 250

Query: 179 GGDNL-------AANF-------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADL 220
              N+       A N        +R        + D                  +T  ++
Sbjct: 251 --LNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 221 LVINKTDLASAIGADLAVMERDALR--MRDGGPFIFAQVG 258
             +    L   +           L   +    P   + + 
Sbjct: 304 KSL----LLKYLD-----CRPQDLPREVLTTNPRRLSIIA 334

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 24/181 (13%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND---IFTKEDGEFLMRNGALPE 135
               +G+ G  G GK+  + A    L  +   +A +  D     T          G++  
Sbjct: 55  NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTG---------GSILG 105

Query: 136 ERIRAVETGGCPHAAIR--------EDISINLGPLEELSNLFKADLLLCESGGDNLAANF 187
           ++ R  +      A IR           S     L  L      D+++ E+ G   +   
Sbjct: 106 DKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE 165

Query: 188 SRELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALR 245
              + D  I +    GGD +   K G  +  ADL+VINK D  +     +A      AL 
Sbjct: 166 VARMVDCFISLQIAGGGDDLQGIKKGL-MEVADLIVINKDDGDNHTNVAIARHMYESALH 224

Query: 246 M 246
           +
Sbjct: 225 I 225

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 12/51 (23%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
              H  +  H  H  + HDH  E     +              +     PH
Sbjct: 95  DHSHGEEEGHDDHSHDGHDHGSESEKEKA------------KGALMVADPH 133

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 31/185 (16%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND---IFTKEDGEFLMRNGALPE 135
           RA  VGI G  G GK+  + AL   L    + +A +  D     T          G++  
Sbjct: 54  RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG---------GSILG 104

Query: 136 ERIRAVETGGCPHAAIREDISI----NLGPL----EELSNLFKA---DLLLCESGGDNLA 184
           ++ R        +A IR          LG +     E   L +A   D++L E+ G   +
Sbjct: 105 DKTRMARLAIDRNAFIR---PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 161

Query: 185 ANFSRELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGA--DLAVMER 241
                +L D+ + ++    GD++   K G     AD++ +NK D           A   R
Sbjct: 162 ETAVADLTDFFLVLMLPGAGDELQGIKKGI-FELADMIAVNKADDGDGERRASAAASEYR 220

Query: 242 DALRM 246
            AL +
Sbjct: 221 AALHI 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.92
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.92
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.92
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.91
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.91
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.91
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.91
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.91
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.9
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.9
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.9
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.9
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.9
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.89
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.89
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.89
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.88
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.88
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.87
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.87
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.87
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.87
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.86
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.86
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.82
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.82
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.77
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.76
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.74
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.73
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.68
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
2og2_A	359	Putative signal recognition particle receptor; nuc	99.65
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.65
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.64
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.64
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.62
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.59
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.56
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.55
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.54
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.51
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.5
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.5
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.49
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.49
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.47
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.46
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.46
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.45
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.44
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.43
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.4
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.4
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.38
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.36
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.3
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.3
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.28
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.25
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.25
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.23
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.21
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.21
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.21
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.18
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.18
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.16
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.16
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.15
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.15
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.13
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.12
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.12
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.12
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.12
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.11
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.11
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.1
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.09
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.09
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.08
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.08
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.07
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.07
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.06
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.05
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.05
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.04
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.04
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.03
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.03
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.03
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.03
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.03
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.03
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.03
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.02
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.02
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.02
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.02
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.01
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.01
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.01
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.0
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.0
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.99
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.99
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.99
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.99
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.99
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.99
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.98
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.97
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.97
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.97
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.96
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.95
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.94
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.94
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.93
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.93
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.93
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.91
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.91
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.9
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.89
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.89
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.89
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.89
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.87
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.87
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.38
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.86
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.86
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.85
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.85
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.85
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.84
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.83
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.83
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.83
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.83
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.82
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.82
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.82
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.82
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.82
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.8
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.8
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.8
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.79
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.79
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.79
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.79
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.78
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.78
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.78
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.78
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.77
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.77
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.76
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.75
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.75
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.73
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.73
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.72
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.72
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.71
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.7
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.69
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.68
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.68
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.68
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.67
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.66
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.65
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.65
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.65
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.64
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.64
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.63
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.63
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.63
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.62
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.61
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.61
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.61
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.61
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.6
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.6
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.6
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.59
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.57
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.57
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.57
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.57
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.57
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.55
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.54
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.54
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.53
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.53
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.51
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.51
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.51
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.5
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.48
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.48
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.47
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.47
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.46
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.45
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.45
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.45
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.45
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.44
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.44
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.43
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.42
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.42
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.41
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.41
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.37
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.37
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.36
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.35
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.35
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.32
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.31
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.31
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.3
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.28
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.26
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.26
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.25
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.24
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.24
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.23
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.23
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.22
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.17
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.17
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.16
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.15
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.12
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.09
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.04
2xxa_A	433	Signal recognition particle protein; protein trans	98.0
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.97
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.96
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.93
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.93
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.92
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.92
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.9
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.9
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.89
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.89
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.86
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.86
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.81
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.79
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.76
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.76
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.76
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.75
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.7
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.69
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.68
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.59
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.58
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.57
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.57
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.56
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.55
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.53
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.52
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.48
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.43
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.42
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	97.35
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.33
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.33
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.32
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.3
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.29
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.29
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.28
3ice_A	422	Transcription termination factor RHO; transcriptio	97.2
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.19
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.19
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.18
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.17
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.15
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.14
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.08
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.08
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.08
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.08
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.06
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.05
3end_A	307	Light-independent protochlorophyllide reductase ir	97.03
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.03
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.98
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.97
3io5_A	333	Recombination and repair protein; storage dimer, i	96.96
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.95
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.94
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.92
1via_A	175	Shikimate kinase; structural genomics, transferase	96.92
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.91
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.91
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.89
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.89
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.87
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.87
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.87
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.86
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.86
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.86
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.84
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.84
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.83
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.8
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.77
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.74
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.74
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.72
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.69
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.68
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.68
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.67
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.65
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.64
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.64
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.63
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.63
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.62
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.62
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.59
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.59
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.56
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.56
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.56
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.55
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.55
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.52
3bos_A	242	Putative DNA replication factor; P-loop containing	96.52
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.49
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.48
3kta_B	173	Chromosome segregation protein SMC; structural mai	96.47
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.47
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.47
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.46
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.43
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.43
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.4
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.39
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.37
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.37
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.37
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.36
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.36
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.35
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.33
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.3
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.29
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.29
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.27
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.26
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.25
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.25
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.24
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.23
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.21
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.16
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.15
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.13
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.1
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.07
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.06
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.06
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.04
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.03
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.0
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.0

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.93  E-value=1.1e-26  Score=207.46  Aligned_cols=152  Identities=14%  Similarity=-0.023  Sum_probs=113.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhcc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNG  131 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig  131 (275)
                      .+..+.|++   ...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...  ....+++.+|
T Consensus        11 ~~ls~~y~~---~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig   87 (275)
T 3gfo_A           11 EELNYNYSD---GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG   87 (275)
T ss_dssp             EEEEEECTT---SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred             EEEEEEECC---CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence            345566654   344666666677889999999999999999999999999999 9999999887422  2335667899


Q ss_pred             ccCchhH---------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          132 ALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       132 ~v~q~~~---------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      |+||++.         +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+
T Consensus        88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL  167 (275)
T 3gfo_A           88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL  167 (275)
T ss_dssp             EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999752         2222221111 11222234456678888777777888888 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | |++++|...
T Consensus       168 DEPts~LD~~~  178 (275)
T 3gfo_A          168 DEPTAGLDPMG  178 (275)
T ss_dssp             ECTTTTCCHHH
T ss_pred             ECccccCCHHH
Confidence            9 999998643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.93  E-value=2.5e-26  Score=212.08  Aligned_cols=155  Identities=15%  Similarity=0.013  Sum_probs=115.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRN  130 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~i  130 (275)
                      .+..+.|++..+...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+   +++++
T Consensus        28 ~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~I  107 (366)
T 3tui_C           28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI  107 (366)
T ss_dssp             EEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTE
T ss_pred             EeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcE
Confidence            445555544111234566666677889999999999999999999999999999 99999999987765543   35679


Q ss_pred             cccCchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          131 GALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       131 g~v~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      ||+||++.        +++.++... .....+....+.+.|+.+++....++.+.+ |+||+||++|||||+ +|+|+|+
T Consensus       108 g~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLl  187 (366)
T 3tui_C          108 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC  187 (366)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999862        233222110 111122234456678888877777888888 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | ||+++|...
T Consensus       188 DEPTs~LD~~~  198 (366)
T 3tui_C          188 DQATSALDPAT  198 (366)
T ss_dssp             ESTTTTSCHHH
T ss_pred             ECCCccCCHHH
Confidence            9 999998643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.93  E-value=4.8e-26  Score=198.82  Aligned_cols=140  Identities=17%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~------  138 (275)
                      ++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......++    ++.+||+||++.      
T Consensus        20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t   99 (235)
T 3tif_A           20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (235)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence            555666667889999999999999999999999999999 999999988876655432    346999999862      


Q ss_pred             --HHHHhcCC----CccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 --RAVETGGC----PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 --~~~~~~~~----~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                        +++.++..    ......+....+.+.++.+..... .+..+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus       100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~  179 (235)
T 3tif_A          100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK  179 (235)
T ss_dssp             HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence              23322210    011122223445556777766543 3667777 999999999999999 99999999 99999975


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       180 ~  180 (235)
T 3tif_A          180 T  180 (235)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.92  E-value=1.3e-25  Score=199.20  Aligned_cols=145  Identities=14%  Similarity=0.050  Sum_probs=108.0

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCChHHHHHhccccCchhH---
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI---  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~---  138 (275)
                      |++.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.  ......+++.+||+||++.   
T Consensus        34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~  113 (263)
T 2olj_A           34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP  113 (263)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred             ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence            33445566666667889999999999999999999999999999 99999988774  1223456678999999752   


Q ss_pred             -----HHHHhcC--CCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 -----RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 -----~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                           +++.++.  .......+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|..
T Consensus       114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~  193 (263)
T 2olj_A          114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE  193 (263)
T ss_dssp             TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence                 2332211  00111112223445677878776667777777 999999999999999 99999999 99999975


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       194 ~  194 (263)
T 2olj_A          194 M  194 (263)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.92  E-value=1.3e-25  Score=199.51  Aligned_cols=142  Identities=16%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......++++.++|++|++.       
T Consensus        23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv  102 (266)
T 4g1u_C           23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV  102 (266)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBH
T ss_pred             CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCH
Confidence            455666666677889999999999999999999999999998 999999999877777777888999999752       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCcc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~~  208 (275)
                       +++.++.... ...+....+.+.++.+......++.+.+ |+||+||++|||+|+       +|+++|+| |++++|..
T Consensus       103 ~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~  181 (266)
T 4g1u_C          103 SEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY  181 (266)
T ss_dssp             HHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred             HHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence             3333332221 1112223445577777776667777777 999999999999998       79999999 99999864


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       182 ~  182 (266)
T 4g1u_C          182 H  182 (266)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=1.2e-25  Score=196.97  Aligned_cols=143  Identities=18%  Similarity=0.054  Sum_probs=104.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~------  138 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+++ +.+||+||++.      
T Consensus        18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt   97 (240)
T 1ji0_A           18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT   97 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred             CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence            344555666667889999999999999999999999999999 9999999887655544443 45999999752      


Q ss_pred             --HHHHhcCCCccchHHHHHHHHHHHHHhh-ccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.++........+....+.+.++.+. .....+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~  174 (240)
T 1ji0_A           98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL  174 (240)
T ss_dssp             HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence              3343432111111111223344566663 55556666777 999999999999999 99999999 999999754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.92  E-value=1.3e-25  Score=200.99  Aligned_cols=145  Identities=14%  Similarity=0.012  Sum_probs=108.1

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC--CCChHHHHHhccccCchhH---
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRNGALPEERI---  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~--~~~~~~~~~~ig~v~q~~~---  138 (275)
                      |++++++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.  ......+++.+||++|++.   
T Consensus        31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~  110 (279)
T 2ihy_A           31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF  110 (279)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred             ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence            33445566666667889999999999999999999999999999 99999988875  4445566778999999852   


Q ss_pred             -------HHHHhcCCCcc-----chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCC
Q 023913          139 -------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (275)
Q Consensus       139 -------~~~~~~~~~~~-----~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~  203 (275)
                             +++.++.....     ...+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++
T Consensus       111 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts  190 (279)
T 2ihy_A          111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA  190 (279)
T ss_dssp             CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred             CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence                   22222211100     0112223455677777776667777777 999999999999999 99999999 899


Q ss_pred             CCCccc
Q 023913          204 GDKIPR  209 (275)
Q Consensus       204 g~d~~~  209 (275)
                      ++|...
T Consensus       191 ~LD~~~  196 (279)
T 2ihy_A          191 GLDFIA  196 (279)
T ss_dssp             TCCHHH
T ss_pred             ccCHHH
Confidence            998643

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=2.1e-25  Score=197.18  Aligned_cols=143  Identities=19%  Similarity=0.086  Sum_probs=108.5

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH-HHHHhccccCchhH------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~------  138 (275)
                      +.+++.+.++...+|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...... .+++.+||+||++.      
T Consensus        19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t   98 (257)
T 1g6h_A           19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT   98 (257)
T ss_dssp             TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred             CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCc
Confidence            445666666667889999999999999999999999999999 9999998887654433 34567999999852      


Q ss_pred             --HHHHhcCCC---c-----------cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          139 --RAVETGGCP---H-----------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       139 --~~~~~~~~~---~-----------~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                        +++.++...   .           .........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+|+|+|
T Consensus        99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD  178 (257)
T 1g6h_A           99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD  178 (257)
T ss_dssp             HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence              333333221   1           11112223455677888776667777777 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       179 EPts~LD~~~  188 (257)
T 1g6h_A          179 EPIAGVAPGL  188 (257)
T ss_dssp             STTTTCCHHH
T ss_pred             CCccCCCHHH
Confidence             999999754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.92  E-value=3.3e-26  Score=198.47  Aligned_cols=143  Identities=18%  Similarity=0.065  Sum_probs=106.2

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HH-HhccccCchhH---
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRNGALPEERI---  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~-~~ig~v~q~~~---  138 (275)
                      +.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+   ++ +.+||+||++.   
T Consensus        16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~   95 (224)
T 2pcj_A           16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP   95 (224)
T ss_dssp             TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred             CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence            345566666667889999999999999999999999999999 99999988876544332   33 67999999752   


Q ss_pred             -----HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -----RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -----~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           +++.++... ..........+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (224)
T 2pcj_A           96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN  175 (224)
T ss_dssp             TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred             CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence                 222221100 011112223445677777776667777777 999999999999999 99999999 899998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.92  E-value=1.9e-25  Score=202.21  Aligned_cols=150  Identities=15%  Similarity=0.172  Sum_probs=109.1

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   ...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus        57 ~~vs~~y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v  133 (306)
T 3nh6_A           57 ENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV  133 (306)
T ss_dssp             EEEEEESST---TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred             EEEEEEcCC---CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence            677788876   455666666667889999999999999999999999999999 9999999999887778888999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +++.++... ... +....+.+  .+..+..  ..+++..+.+     |+||+||++|||||+ +|+|
T Consensus       134 ~Q~~~lf~~Tv~eNi~~~~~~-~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i  211 (306)
T 3nh6_A          134 PQDTVLFNDTIADNIRYGRVT-AGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI  211 (306)
T ss_dssp             CSSCCCCSEEHHHHHHTTSTT-CCH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             ecCCccCcccHHHHHHhhccc-CCH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence            99862       344443222 211 11111111  1111111  1133333333     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +||| ||+++|...
T Consensus       212 LlLDEPts~LD~~~  225 (306)
T 3nh6_A          212 ILLDEATSALDTSN  225 (306)
T ss_dssp             EEEECCSSCCCHHH
T ss_pred             EEEECCcccCCHHH
Confidence            9999 899998643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.92  E-value=1.4e-25  Score=206.70  Aligned_cols=145  Identities=22%  Similarity=0.118  Sum_probs=111.0

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCC--ChHHHHHhccccCchhH---
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERI---  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~---  138 (275)
                      |++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++...  .....++.+||+||++.   
T Consensus        14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p   93 (359)
T 3fvq_A           14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP   93 (359)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred             ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence            34556666777777889999999999999999999999999999 9999998876321  11223467999999852   


Q ss_pred             -----HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -----~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           +++.++..... ...+....+.+.++.+.+....++.+.+ |+||+||++|||||+ +|+++||| |++++|...
T Consensus        94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~  173 (359)
T 3fvq_A           94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL  173 (359)
T ss_dssp             TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                 44444432211 1222334556678888887778888888 999999999999999 99999999 899998653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.92  E-value=3.9e-25  Score=203.68  Aligned_cols=150  Identities=17%  Similarity=0.054  Sum_probs=111.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|++   +.+++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  .++.+||+
T Consensus        18 ~~l~~~y~g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v   92 (355)
T 1z47_A           18 VGVEKIYPG---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLV   92 (355)
T ss_dssp             EEEEECCTT---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEE
T ss_pred             EEEEEEEcC---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEE
Confidence            444455533   556666777777889999999999999999999999999999 999999888765433  24679999


Q ss_pred             CchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          134 PEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ||+..        +++.++... .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+|+||| |
T Consensus        93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP  172 (355)
T 1z47_A           93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP  172 (355)
T ss_dssp             CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99852        233222100 011112223455677888777777888888 999999999999999 99999999 8


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       173 ~s~LD~~~  180 (355)
T 1z47_A          173 FAAIDTQI  180 (355)
T ss_dssp             TCCSSHHH
T ss_pred             cccCCHHH
Confidence            99998653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=6.7e-26  Score=200.39  Aligned_cols=150  Identities=16%  Similarity=0.037  Sum_probs=110.0

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+..+.|.    ++.++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.. ....+++.+||+
T Consensus        19 ~~l~~~y~----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v   93 (256)
T 1vpl_A           19 KDLRKRIG----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYL   93 (256)
T ss_dssp             EEEEEEET----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEE
T ss_pred             EEEEEEEC----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEE
Confidence            45555553    345666666667889999999999999999999999999999 999999887754 344566789999


Q ss_pred             CchhH--------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-C
Q 023913          134 PEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~  201 (275)
                      ||++.        +++.+.... .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+|+||| |
T Consensus        94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP  173 (256)
T 1vpl_A           94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP  173 (256)
T ss_dssp             CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99852        222221100 011111123345567777666666777777 999999999999999 99999999 9


Q ss_pred             CCCCCccc
Q 023913          202 SGGDKIPR  209 (275)
Q Consensus       202 t~g~d~~~  209 (275)
                      ++++|...
T Consensus       174 ts~LD~~~  181 (256)
T 1vpl_A          174 TSGLDVLN  181 (256)
T ss_dssp             TTTCCHHH
T ss_pred             ccccCHHH
Confidence            99999754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.91  E-value=4.3e-25  Score=195.79  Aligned_cols=143  Identities=12%  Similarity=0.038  Sum_probs=105.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC----------CCh---HHHHHhccc
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KED---GEFLMRNGA  132 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~----------~~~---~~~~~~ig~  132 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..          ...   ..+++.+||
T Consensus        18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   97 (262)
T 1b0u_A           18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM   97 (262)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred             CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence            445566666667889999999999999999999999999999 999998887641          222   245678999


Q ss_pred             cCchhH--------HHHHhcC--CCccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEEEE
Q 023913          133 LPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (275)
Q Consensus       133 v~q~~~--------~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vlll  199 (275)
                      +||++.        +++.++.  .......+....+.+.++.+..... .++.+.+ |+||+||++|||+|+ +|+|+|+
T Consensus        98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL  177 (262)
T 1b0u_A           98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF  177 (262)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            999751        2332211  0011111222344567777776665 6777777 999999999999999 9999999


Q ss_pred             e-CCCCCCccc
Q 023913          200 D-VSGGDKIPR  209 (275)
Q Consensus       200 D-~t~g~d~~~  209 (275)
                      | |++++|...
T Consensus       178 DEPts~LD~~~  188 (262)
T 1b0u_A          178 DEPTSALDPEL  188 (262)
T ss_dssp             ESTTTTSCHHH
T ss_pred             eCCCccCCHHH
Confidence            9 999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.91  E-value=2.6e-25  Score=206.31  Aligned_cols=143  Identities=14%  Similarity=-0.000  Sum_probs=109.6

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-----
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (275)
                      |++..++.+.++...+|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+.  .+.+||+||++.     
T Consensus        13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~l   90 (381)
T 3rlf_A           13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL   90 (381)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTS
T ss_pred             ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCC
Confidence            33456666777777889999999999999999999999999999 9999999888765443  367999999852     


Q ss_pred             ---HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ---~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         +++.++.... ....+....+.+.++.+......++.+.+ |+||+||++|||||+ +|+|+||| |++++|...
T Consensus        91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~  168 (381)
T 3rlf_A           91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL  168 (381)
T ss_dssp             CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence               2222221100 11112224455677888777778888888 999999999999999 99999999 899998653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.91  E-value=1.6e-24  Score=193.09  Aligned_cols=154  Identities=13%  Similarity=0.069  Sum_probs=106.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++. +...++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus        20 ~~l~~~y~~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v   98 (271)
T 2ixe_A           20 QDVSFAYPNH-PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV   98 (271)
T ss_dssp             EEEEECCTTC-TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred             EEEEEEeCCC-CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence            4555555430 0134555666667889999999999999999999999999999 9999998877654555667789999


Q ss_pred             CchhH-------HHHHhcCCCccchHH---HH--HHHHHHHHHh--hccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI-------RAVETGGCPHAAIRE---DI--SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~---~~--~~~~~~L~~l--~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      ||++.       +++.++.........   ..  ..+.+.++.+  +.....+..+.+ |+||+||++|||+|+ +|+|+
T Consensus        99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll  178 (271)
T 2ixe_A           99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL  178 (271)
T ss_dssp             CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            99852       333333211111011   01  1122334444  333344555666 999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      ||| |++++|...
T Consensus       179 lLDEPts~LD~~~  191 (271)
T 2ixe_A          179 ILDNATSALDAGN  191 (271)
T ss_dssp             EEESTTTTCCHHH
T ss_pred             EEECCccCCCHHH
Confidence            999 999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.91  E-value=1.5e-24  Score=200.19  Aligned_cols=141  Identities=13%  Similarity=-0.006  Sum_probs=108.0

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||+..       
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv   92 (359)
T 2yyz_A           15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTV   92 (359)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCH
T ss_pred             CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCH
Confidence            445566666667889999999999999999999999999999 9999999887654432  467999999852       


Q ss_pred             -HHHHhcCCCccch-HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~-~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++....... .+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  168 (359)
T 2yyz_A           93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL  168 (359)
T ss_dssp             HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence             3444432211111 11123455678888777777888888 999999999999999 99999999 899998653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.91  E-value=1.7e-24  Score=189.88  Aligned_cols=148  Identities=12%  Similarity=0.055  Sum_probs=103.3

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++   +..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+|
T Consensus         6 ~l~~~y~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   82 (243)
T 1mv5_A            6 HVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS   82 (243)
T ss_dssp             EEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred             EEEEEeCC---CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence            34455543   455566666667889999999999999999999999999998 99999988876544344567799999


Q ss_pred             chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcccccc-----------ccccc-ChhHHHHHHHHHHhc-Cc
Q 023913          135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKAD-----------LLLCE-SGGDNLAANFSRELA-DY  194 (275)
Q Consensus       135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d-----------~~~~e-S~G~~q~~~laral~-~~  194 (275)
                      |++.       +++.++...... .   ..+.+.++.+......+           ..+.+ |+||+||++|||+|+ +|
T Consensus        83 q~~~l~~~tv~enl~~~~~~~~~-~---~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p  158 (243)
T 1mv5_A           83 QDSAIMAGTIRENLTYGLEGDYT-D---EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (243)
T ss_dssp             CSSCCCCEEHHHHTTSCTTSCSC-H---HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCccccccHHHHHhhhccCCCC-H---HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence            9862       222222111111 1   11223444443322222           22344 999999999999999 99


Q ss_pred             eEEEEe-CCCCCCcccc
Q 023913          195 IIYIID-VSGGDKIPRK  210 (275)
Q Consensus       195 ~vlllD-~t~g~d~~~~  210 (275)
                      +++|+| |++++|....
T Consensus       159 ~lllLDEPts~LD~~~~  175 (243)
T 1mv5_A          159 KILMLDEATASLDSESE  175 (243)
T ss_dssp             SEEEEECCSCSSCSSSC
T ss_pred             CEEEEECCcccCCHHHH
Confidence            999999 9999997653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.91  E-value=2.8e-24  Score=188.96  Aligned_cols=148  Identities=14%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++  ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus        11 ~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v   88 (247)
T 2ff7_A           11 RNIRFRYKP--DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV   88 (247)
T ss_dssp             EEEEEESST--TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             EEEEEEeCC--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEE
Confidence            556677742  1344555666666889999999999999999999999999999 9999999888766666677889999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcc-----------ccccccccc-ChhHHHHHHHHHHhc-C
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-----------FKADLLLCE-SGGDNLAANFSRELA-D  193 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-----------~~~d~~~~e-S~G~~q~~~laral~-~  193 (275)
                      ||++.       +++.++ ..... .+.   +.+.++.+...           ...+..+.+ |+||+||++|||+|+ +
T Consensus        89 ~Q~~~l~~~tv~enl~~~-~~~~~-~~~---~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           89 LQDNVLLNRSIIDNISLA-NPGMS-VEK---VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             CSSCCCTTSBHHHHHTTT-CTTCC-HHH---HHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             eCCCccccccHHHHHhcc-CCCCC-HHH---HHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99852       233232 11111 111   11222222221           112233344 999999999999999 8


Q ss_pred             ceEEEEe-CCCCCCccc
Q 023913          194 YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~~  209 (275)
                      |+++||| |++++|...
T Consensus       164 p~lllLDEPts~LD~~~  180 (247)
T 2ff7_A          164 PKILIFDEATSALDYES  180 (247)
T ss_dssp             CSEEEECCCCSCCCHHH
T ss_pred             CCEEEEeCCcccCCHHH
Confidence            9999999 999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=1.1e-24  Score=193.50  Aligned_cols=138  Identities=13%  Similarity=0.007  Sum_probs=103.1

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH---------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---------  138 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..   ..+++.+||++|++.         
T Consensus        21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~~~~~~~~tv~   97 (266)
T 2yz2_A           21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVF   97 (266)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSGGGGCCCSSHH
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccchhhcCCCcHH
Confidence            3555556666789999999999999999999999999999 999998877642   255678999999841         


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhhcc--ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~--~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      +++.++........+....+.+.++.+...  ...++.+.+ |+||+||++|||+|+ +|+|+|+| |++++|...
T Consensus        98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~  173 (266)
T 2yz2_A           98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG  173 (266)
T ss_dssp             HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHH
Confidence            333333211111111123345567777766  566777777 999999999999999 99999999 999998643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.91  E-value=2.7e-25  Score=191.56  Aligned_cols=143  Identities=19%  Similarity=0.131  Sum_probs=103.3

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|    ++ +++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++.     .+++.++|+
T Consensus        14 ~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v   83 (214)
T 1sgw_A           14 RDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFL   83 (214)
T ss_dssp             EEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEE
T ss_pred             EEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEE
Confidence            4445555    34 5555666667889999999999999999999999999999 99999887653     245679999


Q ss_pred             CchhH--------HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CC
Q 023913          134 PEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (275)
Q Consensus       134 ~q~~~--------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t  202 (275)
                      ||++.        +++.++..... .......+.+.++.+..... +..+.+ |+||+||++|||+|+ +|+++|+| |+
T Consensus        84 ~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A           84 PEEIIVPRKISVEDYLKAVASLYG-VKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             CSSCCCCTTSBHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             eCCCcCCCCCCHHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            99752        22222100000 00011233456777766555 666767 999999999999999 99999999 89


Q ss_pred             CCCCccc
Q 023913          203 GGDKIPR  209 (275)
Q Consensus       203 ~g~d~~~  209 (275)
                      +++|...
T Consensus       162 s~LD~~~  168 (214)
T 1sgw_A          162 VAIDEDS  168 (214)
T ss_dssp             TTSCTTT
T ss_pred             cCCCHHH
Confidence            9998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.91  E-value=2.4e-24  Score=199.61  Aligned_cols=141  Identities=11%  Similarity=-0.071  Sum_probs=106.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||+..       
T Consensus        23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv  100 (372)
T 1v43_A           23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTV  100 (372)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCH
T ss_pred             CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCH
Confidence            445566666667889999999999999999999999999999 9999999887654432  467999999863       


Q ss_pred             -HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus       101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  176 (372)
T 1v43_A          101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL  176 (372)
T ss_dssp             HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence             3333332211 11122224456678888777777888888 999999999999999 99999999 899998653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.90  E-value=9e-25  Score=200.92  Aligned_cols=138  Identities=17%  Similarity=0.067  Sum_probs=104.5

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +. ++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  .++.+||+||+..       
T Consensus        13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv   89 (348)
T 3d31_A           13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNV   89 (348)
T ss_dssp             SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCH
T ss_pred             CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCH
Confidence            44 555666667889999999999999999999999999999 999999988765333  3578999999852       


Q ss_pred             -HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++.... ..... ..+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        90 ~enl~~~~~~~-~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~  162 (348)
T 3d31_A           90 KKNLEFGMRMK-KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT  162 (348)
T ss_dssp             HHHHHHHHHHH-CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred             HHHHHHHHHHc-CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence             2222211000 00001 3345577777777777888888 999999999999999 99999999 899998653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.90  E-value=1.1e-24  Score=200.88  Aligned_cols=143  Identities=15%  Similarity=0.003  Sum_probs=107.7

Q ss_pred             CCC--CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhccccCchhH--
Q 023913           67 RRA--PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI--  138 (275)
Q Consensus        67 ~~~--~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~--  138 (275)
                      +..  ++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....   ....++.+||+||+..  
T Consensus        15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~   94 (353)
T 1oxx_K           15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY   94 (353)
T ss_dssp             GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred             CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccC
Confidence            445  566666667889999999999999999999999999999 99999887764310   1123467999999852  


Q ss_pred             ------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 ------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                            +++.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+++||| |++++|..
T Consensus        95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~  174 (353)
T 1oxx_K           95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR  174 (353)
T ss_dssp             TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence                  3444432211 11122234456678888777777888888 999999999999999 99999999 89999975


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       175 ~  175 (353)
T 1oxx_K          175 M  175 (353)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.90  E-value=5.7e-25  Score=203.16  Aligned_cols=142  Identities=12%  Similarity=0.007  Sum_probs=107.4

Q ss_pred             CCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH------
Q 023913           66 SRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------  138 (275)
                      ++..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||+..      
T Consensus        14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~lt   91 (362)
T 2it1_A           14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMT   91 (362)
T ss_dssp             SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSC
T ss_pred             CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCC
Confidence            3455666666667889999999999999999999999999999 9999999887654432  467999999852      


Q ss_pred             --HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 --~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        +++.++... .....+....+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  168 (362)
T 2it1_A           92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL  168 (362)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence              233222100 011111223455677888777777888888 999999999999999 99999999 899998643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=4.5e-24  Score=189.73  Aligned_cols=145  Identities=14%  Similarity=-0.001  Sum_probs=102.5

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHH-HHhccccCchhH--
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--  138 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~--  138 (275)
                      |+++.++.+.++...+|++++|+||||||||||+++|+|+  ++|+ |+|.+.+.++.......+ ++.++|++|++.  
T Consensus        30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~  109 (267)
T 2zu0_C           30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI  109 (267)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred             ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence            3345566666666788999999999999999999999998  4677 999999887755444444 345899999852  


Q ss_pred             ------HHHHhc--------CCCccchHHHHHHHHHHHHHhhcc-cccccccc-c-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          139 ------RAVETG--------GCPHAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       139 ------~~~~~~--------~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~-e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                            +++.+.        +.......+....+.+.++.+... ...++.+. + |+||+||++|||+|+ +|+|+|||
T Consensus       110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD  189 (267)
T 2zu0_C          110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD  189 (267)
T ss_dssp             TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence                  222111        111111111123445577777664 34556654 3 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       190 EPts~LD~~~  199 (267)
T 2zu0_C          190 ESDSGLDIDA  199 (267)
T ss_dssp             STTTTCCHHH
T ss_pred             CCCCCCCHHH
Confidence             999999754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.90  E-value=7.5e-24  Score=186.49  Aligned_cols=137  Identities=11%  Similarity=0.052  Sum_probs=104.7

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH--------HH
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~  140 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+|+|.+.+.++.......+++.+||++|++.        ++
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   93 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY   93 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence            3455555566789999999999999999999999999877999998877755555667788999999752        33


Q ss_pred             HHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce-------EEEEe-CCCCCCccc
Q 023913          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI-------IYIID-VSGGDKIPR  209 (275)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~-------vlllD-~t~g~d~~~  209 (275)
                      +.++......    ...+.+.++.+......++.+.+ |+||+||++|||+|+ +|+       ++|+| |++++|...
T Consensus        94 l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~  168 (249)
T 2qi9_C           94 LTLHQHDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ  168 (249)
T ss_dssp             HHTTCSSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHH
T ss_pred             HHHhhccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHH
Confidence            3333211111    22344567777766666777777 999999999999999 899       99999 999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.90  E-value=8.8e-24  Score=185.10  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=102.2

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~  141 (275)
                      +.+.++...+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++....  ..++.+||+||++.        +++
T Consensus        15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl   91 (240)
T 2onk_A           15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI   91 (240)
T ss_dssp             EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred             EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence            5556666688 999999999999999999999999999 99999888775422  23467999999852        333


Q ss_pred             HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      .++... .........+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~  161 (240)
T 2onk_A           92 AYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT  161 (240)
T ss_dssp             HTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred             HHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            332211 11111233455677777776666777777 999999999999999 99999999 999999754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.90  E-value=2.8e-24  Score=199.32  Aligned_cols=141  Identities=11%  Similarity=-0.068  Sum_probs=105.3

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC------CChHHHHHhccccCchhH-
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI-  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~-  138 (275)
                      +..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+.++..      ..+  ..+.+||+||+.. 
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~~r~ig~v~Q~~~l   92 (372)
T 1g29_1           15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--KDRDIAMVFQSYAL   92 (372)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--GGSSEEEECSCCCC
T ss_pred             CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--hHCCEEEEeCCCcc
Confidence            445566666667889999999999999999999999999999 999998877643      222  2467999999852 


Q ss_pred             -------HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          139 -------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       139 -------~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                             +++.++... .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|+|+||| |++++|.
T Consensus        93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  172 (372)
T 1g29_1           93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA  172 (372)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred             CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence                   233222110 011111223455677777777777888888 999999999999999 99999999 8999986


Q ss_pred             cc
Q 023913          208 PR  209 (275)
Q Consensus       208 ~~  209 (275)
                      ..
T Consensus       173 ~~  174 (372)
T 1g29_1          173 KL  174 (372)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.89  E-value=1.3e-23  Score=185.43  Aligned_cols=130  Identities=17%  Similarity=0.153  Sum_probs=96.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      ++.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+             ++.+||+||++.       
T Consensus        17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i~~v~q~~~~~~~~tv   83 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSIGFVPQFFSSPFAYSV   83 (253)
T ss_dssp             TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCEEEECSCCCCSSCCBH
T ss_pred             CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccEEEEcCCCccCCCCCH
Confidence            344555666667889999999999999999999999999999 99871             246889988752       


Q ss_pred             -HHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                       +++.++....     .........+.+.++.+......++.+.+ |+||+||++|||+|+ +|+++|+| |++++|...
T Consensus        84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~  163 (253)
T 2nq2_C           84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN  163 (253)
T ss_dssp             HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred             HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence             3333322111     00112223445677777776666777777 999999999999999 99999999 999998654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.89  E-value=1.5e-23  Score=184.54  Aligned_cols=143  Identities=15%  Similarity=0.020  Sum_probs=98.7

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc--cCCC-CcEEEEeccCCCCChHHHH-HhccccCchhH----
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI----  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~----  138 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|+  ++|+ |+|.+.+.++.......+. +.++|++|++.    
T Consensus        15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   94 (250)
T 2d2e_A           15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPG   94 (250)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCS
T ss_pred             CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccC
Confidence            34455566666788999999999999999999999998  7788 9999999887665544443 35899999752    


Q ss_pred             ----HHHHhcCC----CccchHHHHHHHHHHHHHhhc-cccccccccc--ChhHHHHHHHHHHhc-CceEEEEe-CCCCC
Q 023913          139 ----RAVETGGC----PHAAIREDISINLGPLEELSN-LFKADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (275)
Q Consensus       139 ----~~~~~~~~----~~~~~~~~~~~~~~~L~~l~~-~~~~d~~~~e--S~G~~q~~~laral~-~~~vlllD-~t~g~  205 (275)
                          +++.+...    ......+....+.+.++.+.. ....++.+.+  |+||+||++|||+|+ +|+++|+| |++++
T Consensus        95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L  174 (250)
T 2d2e_A           95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL  174 (250)
T ss_dssp             CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred             CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence                22221100    000111112334456777766 3445555554  999999999999999 99999999 89999


Q ss_pred             Cccc
Q 023913          206 KIPR  209 (275)
Q Consensus       206 d~~~  209 (275)
                      |...
T Consensus       175 D~~~  178 (250)
T 2d2e_A          175 DIDA  178 (250)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            8654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.89  E-value=3.5e-23  Score=183.31  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=101.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccC
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      .++.+.|++.. ...++.+.++...+|++++|+||||||||||+++|+|+++|.|+|.+.+.++.......+++.++|+|
T Consensus        21 ~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~   99 (260)
T 2ghi_A           21 SDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVP   99 (260)
T ss_dssp             EEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEEC
T ss_pred             EEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEc
Confidence            45556664410 12355555666678999999999999999999999999986799999888775555556777899999


Q ss_pred             chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhc-------cccc----cccccc-ChhHHHHHHHHHHhc-Cc
Q 023913          135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKA----DLLLCE-SGGDNLAANFSRELA-DY  194 (275)
Q Consensus       135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~-------~~~~----d~~~~e-S~G~~q~~~laral~-~~  194 (275)
                      |++.       +++.++. .... .+..   .+.++.+..       ....    +..+.+ |+||+||++|||+|+ +|
T Consensus       100 Q~~~l~~~tv~enl~~~~-~~~~-~~~~---~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  174 (260)
T 2ghi_A          100 QDTILFNETIKYNILYGK-LDAT-DEEV---IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP  174 (260)
T ss_dssp             SSCCCCSEEHHHHHHTTC-TTCC-HHHH---HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCcccccCHHHHHhccC-CCCC-HHHH---HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence            9862       3333332 1111 1111   112222111       1111    223344 999999999999999 99


Q ss_pred             eEEEEe-CCCCCCccc
Q 023913          195 IIYIID-VSGGDKIPR  209 (275)
Q Consensus       195 ~vlllD-~t~g~d~~~  209 (275)
                      +|+|+| |++++|...
T Consensus       175 ~lllLDEPts~LD~~~  190 (260)
T 2ghi_A          175 KIVIFDEATSSLDSKT  190 (260)
T ss_dssp             SEEEEECCCCTTCHHH
T ss_pred             CEEEEECccccCCHHH
Confidence            999999 999998654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.88  E-value=3.4e-23  Score=193.08  Aligned_cols=145  Identities=13%  Similarity=0.053  Sum_probs=104.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.+.|++  ++..++.+.++...+|++++|+|||||||||||++|+|+++ + |+|.+.+.++.......+++.+||+
T Consensus        23 ~~l~~~y~~--~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v   99 (390)
T 3gd7_A           23 KDLTAKYTE--GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI   99 (390)
T ss_dssp             EEEEEESSS--SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred             EEEEEEecC--CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence            556666753  14456666666778899999999999999999999999988 6 9999999998877777788899999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccc------------cChhHHHHHHHHHHhc-C
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLC------------ESGGDNLAANFSRELA-D  193 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~------------eS~G~~q~~~laral~-~  193 (275)
                      ||++.       +++.....   ...   ..+.+.++.+.+....++.+.            -|+||+||++|||||+ +
T Consensus       100 ~Q~~~lf~~tv~enl~~~~~---~~~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~  173 (390)
T 3gd7_A          100 PQKVFIFSGTFRKNLDPNAA---HSD---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK  173 (390)
T ss_dssp             SCCCCCCSEEHHHHHCTTCC---SCH---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred             cCCcccCccCHHHHhhhccc---cCH---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence            99862       22211111   111   122334444443332222222            1999999999999999 9


Q ss_pred             ceEEEEe-CCCCCCcc
Q 023913          194 YIIYIID-VSGGDKIP  208 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~  208 (275)
                      |+|+||| |++++|..
T Consensus       174 P~lLLLDEPts~LD~~  189 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPV  189 (390)
T ss_dssp             CCEEEEESHHHHSCHH
T ss_pred             CCEEEEeCCccCCCHH
Confidence            9999999 88888853

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.88  E-value=1.5e-22  Score=213.79  Aligned_cols=152  Identities=14%  Similarity=0.114  Sum_probs=115.6

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.||+. ++.+++.+.++..++|+.++|+|++|||||||+++|.++++|+ |+|.++|.|+.+.+...++++++||
T Consensus      1080 ~nVsf~Y~~~-~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A         1080 KNVRFAYPER-PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp             EEEEECCTTS-CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred             EEEEEeCCCC-CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence            7888999861 0123445555566789999999999999999999999999998 9999999999999999999999999


Q ss_pred             CchhH-------HHHHhcCCC-ccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERI-------RAVETGGCP-HAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~-~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ||++.       +|+.++..+ ..+. +++..+.+  .+.++.  ...++|..+.|     |+|||||++|||||+ +|+
T Consensus      1159 ~Qdp~LF~gTIreNI~~gld~~~~sd-~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ 1237 (1321)
T 4f4c_A         1159 SQEPTLFDCSIAENIIYGLDPSSVTM-AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPK 1237 (1321)
T ss_dssp             CSSCCCCSEEHHHHHSSSSCTTTSCH-HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCS
T ss_pred             CCCCEeeCccHHHHHhccCCCCCCCH-HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCC
Confidence            99983       444444333 2222 22221111  222321  24578888887     999999999999999 999


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      |+||| ||+.+|..
T Consensus      1238 ILiLDEaTSaLD~~ 1251 (1321)
T 4f4c_A         1238 ILLLDEATSALDTE 1251 (1321)
T ss_dssp             EEEEESCCCSTTSH
T ss_pred             EEEEeCccccCCHH
Confidence            99999 88888854

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=177.45  Aligned_cols=139  Identities=17%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++  .+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+             .++|+|
T Consensus         8 ~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~   72 (237)
T 2cbz_A            8 NATFTWAR--SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVP   72 (237)
T ss_dssp             EEEEESCT--TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEEC
T ss_pred             EEEEEeCC--CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEc
Confidence            34455542  0244555666667889999999999999999999999999998 9998865             378888


Q ss_pred             chhH-------HHHHhcCCCccchHHHHHHHHHHHHHhhccc-----cccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-----~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      |++.       +++.++.................++.+....     ..+..+.+ |+||+||++|||+|+ +|+|+|+|
T Consensus        73 Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD  152 (237)
T 2cbz_A           73 QQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD  152 (237)
T ss_dssp             SSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            8752       3333322111111111111111122221111     12344555 999999999999999 99999999


Q ss_pred             -CCCCCCccc
Q 023913          201 -VSGGDKIPR  209 (275)
Q Consensus       201 -~t~g~d~~~  209 (275)
                       |++++|...
T Consensus       153 EPts~LD~~~  162 (237)
T 2cbz_A          153 DPLSAVDAHV  162 (237)
T ss_dssp             STTTTSCHHH
T ss_pred             CcccccCHHH
Confidence             899998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.87  E-value=1.7e-22  Score=197.76  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=108.0

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++  +...++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..+++++++|+
T Consensus       345 ~~v~~~y~~--~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v  422 (587)
T 3qf4_A          345 ENVEFRYFE--NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV  422 (587)
T ss_dssp             EEEEECSSS--SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEE
T ss_pred             EEEEEEcCC--CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEE
Confidence            677788875  1234555555666789999999999999999999999999999 9999999999877778888999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      ||++.       +++.++ .+.....+.... ....+.++.  ...+++..+.+     |+||+||++|||||+ +|+|+
T Consensus       423 ~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il  501 (587)
T 3qf4_A          423 PQETVLFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL  501 (587)
T ss_dssp             CSSCCCCSEEHHHHHTTT-CSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCCCcCcCccHHHHHhcc-CCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence            99862       333333 222222111110 011111111  12234444433     999999999999999 99999


Q ss_pred             EEe-CCCCCCcc
Q 023913          198 IID-VSGGDKIP  208 (275)
Q Consensus       198 llD-~t~g~d~~  208 (275)
                      |+| ||+++|..
T Consensus       502 llDEpts~LD~~  513 (587)
T 3qf4_A          502 ILDDCTSSVDPI  513 (587)
T ss_dssp             EEESCCTTSCHH
T ss_pred             EEECCcccCCHH
Confidence            999 89998864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.87  E-value=1.4e-23  Score=186.25  Aligned_cols=134  Identities=22%  Similarity=0.079  Sum_probs=97.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcc-ccCchhH------H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERI------R  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~------~  139 (275)
                      +.++.+.++... |++++|+|||||||||||++|+|++ |+ |+|.+.+.++...  .. ++.++ |+||++.      +
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~e   92 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVND   92 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHH
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHH
Confidence            345556666667 9999999999999999999999999 98 9999988766432  12 56799 9999852      1


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.+.....   ......+.+.++.+... ...++.+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus        93 nl~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~  163 (263)
T 2pjz_A           93 IVYLYEELK---GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR  163 (263)
T ss_dssp             HHHHHHHHT---CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHH
T ss_pred             HHHHhhhhc---chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHH
Confidence            111110000   00112334566777665 556677777 999999999999999 99999999 999998654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.87  E-value=2e-22  Score=197.62  Aligned_cols=150  Identities=16%  Similarity=0.152  Sum_probs=109.2

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++   +..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..+++++++|+
T Consensus       358 ~~v~~~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v  434 (598)
T 3qf4_B          358 KNVWFSYDK---KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV  434 (598)
T ss_dssp             EEEECCSSS---SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEEECCC---CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence            667777765   455666666677889999999999999999999999999999 9999999998887778888999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +++.++ .+..+.. ....+.+  .+..+..  ..+++..+.|     |+||+||++||||++ +|++
T Consensus       435 ~Q~~~lf~~tv~eni~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i  512 (598)
T 3qf4_B          435 LQDTILFSTTVKENLKYG-NPGATDE-EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI  512 (598)
T ss_dssp             CTTCCCCSSBHHHHHHSS-STTCCTT-HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred             eCCCccccccHHHHHhcC-CCCCCHH-HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            99862       344333 2222111 1111111  1111111  1234444443     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       513 lllDEpts~LD~~~  526 (598)
T 3qf4_B          513 LILDEATSNVDTKT  526 (598)
T ss_dssp             EEECCCCTTCCHHH
T ss_pred             EEEECCccCCCHHH
Confidence            9999 899998643

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.87  E-value=2.1e-22  Score=196.71  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=108.5

Q ss_pred             ccccccCCCCCCCC-CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRR-APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   .. .++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.+||
T Consensus       343 ~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~  419 (578)
T 4a82_A          343 DHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL  419 (578)
T ss_dssp             EEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred             EEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence            677788876   44 4555555666789999999999999999999999999999 999999999887777888899999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +++.++ .+..... ......+  .+.++.  ...+++..+.|     |+||+||+++||+++ +|+
T Consensus       420 v~Q~~~l~~~tv~eni~~~-~~~~~~~-~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~  497 (578)
T 4a82_A          420 VQQDNILFSDTVKENILLG-RPTATDE-EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  497 (578)
T ss_dssp             ECSSCCCCSSBHHHHHGGG-CSSCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             EeCCCccCcccHHHHHhcC-CCCCCHH-HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            999862       344333 2222211 1111110  111111  12234444443     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       498 illlDEpts~LD~~~  512 (578)
T 4a82_A          498 ILILDEATSALDLES  512 (578)
T ss_dssp             EEEEESTTTTCCHHH
T ss_pred             EEEEECccccCCHHH
Confidence            99999 899998643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.87  E-value=2.7e-22  Score=196.05  Aligned_cols=151  Identities=17%  Similarity=0.128  Sum_probs=108.4

Q ss_pred             ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.+.|++   + ..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.++|
T Consensus       345 ~~v~~~y~~---~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b60_A          345 RNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL  421 (582)
T ss_dssp             EEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEcCC---CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence            667777764   3 44555666667889999999999999999999999999999 999999999877777778889999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +++.++..+.... +....+.+  .+.++..  ..+++..+.+     |+||+||++|||+++ +|+
T Consensus       422 v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~  500 (582)
T 3b60_A          422 VSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP  500 (582)
T ss_dssp             ECSSCCCCSSBHHHHHHTTTTSCCCH-HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             EccCCcCCCCCHHHHHhccCCCCCCH-HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            999862       4444433122221 11111111  1111111  1233444433     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       501 illlDEpts~LD~~~  515 (582)
T 3b60_A          501 ILILDEATSALDTES  515 (582)
T ss_dssp             EEEEETTTSSCCHHH
T ss_pred             EEEEECccccCCHHH
Confidence            99999 899998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.87  E-value=3.5e-22  Score=173.65  Aligned_cols=136  Identities=16%  Similarity=0.077  Sum_probs=89.7

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (275)
                      ++.+.|++  ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+             .++|+|
T Consensus        11 ~l~~~y~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~   75 (229)
T 2pze_A           11 NVTAFWEE--GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS   75 (229)
T ss_dssp             EEEECSST--TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEEC
T ss_pred             EEEEEeCC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEe
Confidence            44555542  1344555666667889999999999999999999999999999 9998865             378888


Q ss_pred             chhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhcc--c----cccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          135 EERI-------RAVETGGCPHAAIREDISINLG--PLEELSNL--F----KADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       135 q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~~--~----~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      |++.       +++.++.. ...  .......+  .+..+...  .    ..+..+.+ |+||+||++|||+|+ +|+++
T Consensus        76 q~~~~~~~tv~enl~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll  152 (229)
T 2pze_A           76 QFSWIMPGTIKENIIFGVS-YDE--YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY  152 (229)
T ss_dssp             SSCCCCSBCHHHHHHTTSC-CCH--HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred             cCCcccCCCHHHHhhccCC-cCh--HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            8752       33333211 110  00111000  11111110  0    11122344 999999999999999 89999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| |++++|...
T Consensus       153 lLDEPts~LD~~~  165 (229)
T 2pze_A          153 LLDSPFGYLDVLT  165 (229)
T ss_dssp             EEESTTTTSCHHH
T ss_pred             EEECcccCCCHHH
Confidence            999 999999754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.87  E-value=2.9e-22  Score=195.88  Aligned_cols=151  Identities=16%  Similarity=0.144  Sum_probs=107.5

Q ss_pred             ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.+.|++   + ..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.+||
T Consensus       345 ~~v~~~y~~---~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b5x_A          345 KDVTFTYQG---KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL  421 (582)
T ss_pred             EEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence            667777765   3 44555666667889999999999999999999999999998 999999998877666778888999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       +++.++..+... .+....+.+  .+.++..  ..+++..+.+     |+||+||++|||+|+ +|+
T Consensus       422 v~Q~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~  500 (582)
T 3b5x_A          422 VSQNVHLFNDTIANNIAYAAEGEYT-REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP  500 (582)
T ss_pred             EcCCCccccccHHHHHhccCCCCCC-HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence            999873       333333212222 111111111  1122211  1233443433     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      ++|+| |++++|...
T Consensus       501 illlDEpts~LD~~~  515 (582)
T 3b5x_A          501 VLILDEATSALDTES  515 (582)
T ss_pred             EEEEECccccCCHHH
Confidence            99999 899998754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.86  E-value=1.1e-21  Score=207.07  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=116.4

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.||+. ++..++.+.++..++|+.++|+||+|||||||+++|+|+++|+ |+|.++|.++.+.+...++++++||
T Consensus       419 ~nvsF~Y~~~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v  497 (1321)
T 4f4c_A          419 ENVHFTYPSR-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV  497 (1321)
T ss_dssp             EEEEECCSSS-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred             EEeeeeCCCC-CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence            7888999861 1223445555566789999999999999999999999999999 9999999999999999999999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHH-HHHHHHHh--hccccccccccc-----ChhHHHHHHHHHHhc-CceEE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-~~~~L~~l--~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vl  197 (275)
                      +|++.       +|+.++ .+..+..+-... ....+.++  ....+++..++|     ||||+||++||||+. +|+|+
T Consensus       498 ~Q~~~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Il  576 (1321)
T 4f4c_A          498 SQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL  576 (1321)
T ss_dssp             CSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CCcceeeCCchhHHHhhh-cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEE
Confidence            99983       444444 444433221111 11112222  124577888887     999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      ||| |++.+|...
T Consensus       577 iLDE~tSaLD~~t  589 (1321)
T 4f4c_A          577 LLDEATSALDAES  589 (1321)
T ss_dssp             EEESTTTTSCTTT
T ss_pred             EEecccccCCHHH
Confidence            999 888888643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.82  E-value=2.7e-21  Score=177.19  Aligned_cols=201  Identities=17%  Similarity=0.104  Sum_probs=129.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHHHHhccccCchhHHHHHh
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVET  143 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~~~~  143 (275)
                      .++.+.++...+|++++|+|+||||||||+++|+|++.|+ |+|.+.+.++.....    ...++++++++|++..++. 
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-  121 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR-  121 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE-
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc-
Confidence            3344444556779999999999999999999999999987 999999998854321    1234678999987532211 


Q ss_pred             cCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEE
Q 023913          144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI  223 (275)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivl  223 (275)
                      ....+|.+......+.+.+..+ .....+.+++|+.|..+........++..++++|+..+++.+.........++++++
T Consensus       122 ~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl  200 (337)
T 2qm8_A          122 PSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV  200 (337)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred             cCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence            1122444444333333344222 345689999999998765433334447788889987665432222223467899999


Q ss_pred             ecCCCCccch---hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913          224 NKTDLASAIG---ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       224 NK~Dl~~~~~---~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ||+|+.....   ...+.+...+..++|     ..+++++|+++++|+++|++.+.
T Consensus       201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~  256 (337)
T 2qm8_A          201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE  256 (337)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHH
Confidence            9999865311   123334444444453     46899999999999999987653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.82  E-value=2.1e-20  Score=196.87  Aligned_cols=150  Identities=17%  Similarity=0.123  Sum_probs=109.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++. .+..++.+.++..++|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+||+
T Consensus       391 ~~v~~~y~~~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v  469 (1284)
T 3g5u_A          391 KNIHFSYPSR-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV  469 (1284)
T ss_dssp             EEEEECCSST-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred             EEEEEEcCCC-CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence            6778888761 0123555566666889999999999999999999999999999 9999999999888888899999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHH-----HHHHHHHhhccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISI-----NLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~-----~~~~L~~l~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +|++.       +++.++.. ..+..+....     ..+.+..+  ..+++..+.|     |+||+||++|||||+ +|+
T Consensus       470 ~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~  546 (1284)
T 3g5u_A          470 SQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK  546 (1284)
T ss_dssp             CSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhc--cccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence            99972       44444432 2222111110     11122222  2344555544     999999999999999 999


Q ss_pred             EEEEe-CCCCCCcc
Q 023913          196 IYIID-VSGGDKIP  208 (275)
Q Consensus       196 vlllD-~t~g~d~~  208 (275)
                      |+||| ||+.+|..
T Consensus       547 iliLDEpts~LD~~  560 (1284)
T 3g5u_A          547 ILLLDEATSALDTE  560 (1284)
T ss_dssp             EEEEESTTCSSCHH
T ss_pred             EEEEECCCCCCCHH
Confidence            99999 88898864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.82  E-value=1.6e-20  Score=168.64  Aligned_cols=127  Identities=16%  Similarity=0.133  Sum_probs=83.1

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (275)
                      ..++.+.++...+|++++|+|||||||||||++|+|+++|+ |+|.+.+             .++|+||++.       +
T Consensus        51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e  117 (290)
T 2bbs_A           51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKE  117 (290)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHH
T ss_pred             ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHH
Confidence            44555666667889999999999999999999999999998 9998754             3788888752       2


Q ss_pred             HHHhcCCCccchH-HHHHHH---HHHHHHhhccc--cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          140 AVETGGCPHAAIR-EDISIN---LGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       140 ~~~~~~~~~~~~~-~~~~~~---~~~L~~l~~~~--~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.  +....... ......   .+.+..+....  ..+..+.+ |+||+||++|||+|+ +|+++||| |++++|...
T Consensus       118 nl~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~  194 (290)
T 2bbs_A          118 NII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT  194 (290)
T ss_dssp             HHH--TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             Hhh--CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH
Confidence            332  22111000 000000   01111111000  11112344 999999999999999 89999999 899998643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.81  E-value=2.4e-20  Score=196.52  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=110.8

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .++.|.|++. ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...++++++|+
T Consensus      1034 ~~v~~~y~~~-~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A         1034 SGVVFNYPTR-PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp             EEEEBCCSCG-GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred             EEEEEECCCC-CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence            6777888761 0124555666667889999999999999999999999999999 9999999999888888888899999


Q ss_pred             CchhH-------HHHHhcCCC-ccchHHHHHHHH--HHHHHhhc--cccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERI-------RAVETGGCP-HAAIREDISINL--GPLEELSN--LFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~-~~~~~~~~~~~~--~~L~~l~~--~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ||++.       +++.++... ..+. +......  ..+.++..  ..+++..+.|     |+||+||++|||+|+ +|+
T Consensus      1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~-~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~ 1191 (1284)
T 3g5u_A         1113 SQEPILFDCSIAENIAYGDNSRVVSY-EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191 (1284)
T ss_dssp             ESSCCCCSSBHHHHHTCCCSSCCCCH-HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             CCCCccccccHHHHHhccCCCCCCCH-HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCC
Confidence            99972       333333221 1221 1111111  11222212  2355666655     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+||| ||+++|...
T Consensus      1192 iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A         1192 ILLLDEATSALDTES 1206 (1284)
T ss_dssp             SEEEESCSSSCCHHH
T ss_pred             EEEEeCCcccCCHHH
Confidence            99999 899998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.77  E-value=1.4e-19  Score=175.33  Aligned_cols=134  Identities=18%  Similarity=0.093  Sum_probs=88.6

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE---------EEeccCCCCChHHHH---HhccccCch
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA---------AVTNDIFTKEDGEFL---MRNGALPEE  136 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~---------i~~~d~~~~~~~~~~---~~ig~v~q~  136 (275)
                      ++.+.+ ...+|++++|+||||||||||+|+|+|+++|+ |++.         +.+.++... .....   ..+++++|.
T Consensus        37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~q~  114 (538)
T 1yqt_A           37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY-FEKLKNGEIRPVVKPQY  114 (538)
T ss_dssp             EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH-HHHHHTTSCCCEEECSC
T ss_pred             cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH-HHHHHHHhhhhhhhhhh
Confidence            455555 56789999999999999999999999999998 8831         111111000 00111   135566665


Q ss_pred             hHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCc
Q 023913          137 RIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (275)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~  207 (275)
                      ........  . .+..+.+      ..+.+.|+.++.....++.+.+ |+||+||++||++|+ +|+|+||| ||+++|.
T Consensus       115 ~~~~~~~~--~-~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~  191 (538)
T 1yqt_A          115 VDLIPKAV--K-GKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI  191 (538)
T ss_dssp             GGGSGGGC--C-SBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             hhhcchhh--h-ccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence            32111100  0 0111111      1234567777776667778888 999999999999999 99999999 9999986


Q ss_pred             c
Q 023913          208 P  208 (275)
Q Consensus       208 ~  208 (275)
                      .
T Consensus       192 ~  192 (538)
T 1yqt_A          192 R  192 (538)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.77  E-value=1.1e-19  Score=178.33  Aligned_cols=119  Identities=20%  Similarity=0.147  Sum_probs=86.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc-h----
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA-I----  151 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~-~----  151 (275)
                      ..+|++++|+|||||||||||++|+|+++|+ |+|.+             ...+||+||++......+...... .    
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~  445 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK  445 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence            4679999999999999999999999999998 98864             135889998742100000000000 0    


Q ss_pred             HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          152 REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       152 ~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ......+.+.++.+......++.+.+ |+||+||++|||+|+ +|.|+||| ||+++|...
T Consensus       446 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~  506 (607)
T 3bk7_A          446 LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ  506 (607)
T ss_dssp             HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred             CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence            00112234567777766667777777 999999999999999 89999999 999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.76  E-value=6.8e-19  Score=172.50  Aligned_cols=140  Identities=14%  Similarity=0.045  Sum_probs=89.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hcccc--------
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGAL--------  133 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v--------  133 (275)
                      +|+.....+.......+|++++|+||||||||||||+|+|+++|+ |+|..   . ..  ...... -.|..        
T Consensus        86 ~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~---~-~~--~~~~~~~~~g~~~~~~~~~~  159 (608)
T 3j16_B           86 RYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDD---P-PE--WQEIIKYFRGSELQNYFTKM  159 (608)
T ss_dssp             ECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCC---S-SC--HHHHHHHTTTSTHHHHHHHH
T ss_pred             EECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEec---c-cc--hhhhhheecChhhhhhhhHH
Confidence            454454555555667789999999999999999999999999998 98621   0 00  011100 01111        


Q ss_pred             ----------CchhHHHHHhcCCCccchHH--------HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-C
Q 023913          134 ----------PEERIRAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D  193 (275)
Q Consensus       134 ----------~q~~~~~~~~~~~~~~~~~~--------~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~  193 (275)
                                +|...........+.....+        ....+.+.++.+......++.+.+ |+||+||++||++|+ +
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~  239 (608)
T 3j16_B          160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE  239 (608)
T ss_dssp             HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred             HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence                      11100000000000001110        112345577777777777888888 999999999999999 8


Q ss_pred             ceEEEEe-CCCCCCccc
Q 023913          194 YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       194 ~~vlllD-~t~g~d~~~  209 (275)
                      |+|+||| |++++|...
T Consensus       240 p~llllDEPts~LD~~~  256 (608)
T 3j16_B          240 ADVYMFDEPSSYLDVKQ  256 (608)
T ss_dssp             CSEEEEECTTTTCCHHH
T ss_pred             CCEEEEECcccCCCHHH
Confidence            9999999 999998643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.76  E-value=3.4e-19  Score=174.74  Aligned_cols=141  Identities=21%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             CCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE---------EEeccCCCCChHHHH---Hh
Q 023913           64 YFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA---------AVTNDIFTKEDGEFL---MR  129 (275)
Q Consensus        64 ~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~---------i~~~d~~~~~~~~~~---~~  129 (275)
                      +|+... ++.+.+ ...+|++++|+|||||||||||++|+|+++|+ |++.         +.+.++... .....   ..
T Consensus       100 ~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~  177 (607)
T 3bk7_A          100 RYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNY-FERLKNGEIR  177 (607)
T ss_dssp             ECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHH-HHHHHHTSCC
T ss_pred             EECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhh-hhhhhhhhcc
Confidence            444443 444544 56789999999999999999999999999998 8841         111111000 00111   13


Q ss_pred             ccccCchhHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-
Q 023913          130 NGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (275)
Q Consensus       130 ig~v~q~~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-  200 (275)
                      +++++|........  .. .+..+.+      ..+.+.|+.++.....++.+.+ |+||+||++|||+|+ +|+|+||| 
T Consensus       178 i~~~~q~~~~~~~~--~~-~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDE  254 (607)
T 3bk7_A          178 PVVKPQYVDLLPKA--VK-GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDE  254 (607)
T ss_dssp             CEEECSCGGGGGGT--CC-SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             eEEeechhhhchhh--cc-ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            55666643211110  00 0121111      1234567777776677888888 999999999999999 99999999 


Q ss_pred             CCCCCCccc
Q 023913          201 VSGGDKIPR  209 (275)
Q Consensus       201 ~t~g~d~~~  209 (275)
                      ||+++|...
T Consensus       255 PTs~LD~~~  263 (607)
T 3bk7_A          255 PSSYLDIRQ  263 (607)
T ss_dssp             TTTTCCHHH
T ss_pred             CcccCCHHH
Confidence            999999653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.75  E-value=1.4e-19  Score=175.27  Aligned_cols=113  Identities=21%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH--
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED--  154 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~--  154 (275)
                      ..+|++++|+||||||||||+++|+|+++|+ |+|.+             ...++|+||++...      ...+..+.  
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~------~~~tv~~~~~  369 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKAD------YEGTVYELLS  369 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCC------CSSBHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCC------CCCcHHHHHH
Confidence            4679999999999999999999999999998 98864             12588999875210      11111110  


Q ss_pred             ---------HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          155 ---------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       155 ---------~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                               ...+.+.++.+......++.+.+ |+||+||++|||+|+ +|.|+||| ||+++|...
T Consensus       370 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~  436 (538)
T 1yqt_A          370 KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ  436 (538)
T ss_dssp             HHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred             hhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence                     11233455556555556777777 999999999999999 89999999 999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.75  E-value=1.4e-18  Score=168.29  Aligned_cols=119  Identities=18%  Similarity=0.132  Sum_probs=85.1

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCC
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP  147 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~  147 (275)
                      ...+|++++|+||||||||||+++|+|+++|+ |+|.+.+            +.++|++|+..        +++......
T Consensus       290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~  357 (538)
T 3ozx_A          290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENASKD  357 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHCSS
T ss_pred             eECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhhhh
Confidence            35679999999999999999999999999998 9987532            23566666431        122211111


Q ss_pred             ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ....  ......+.++.+......++.+.+ |+||+||++|||+|+ +|+|+||| ||+++|...
T Consensus       358 ~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~  420 (538)
T 3ozx_A          358 ALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE  420 (538)
T ss_dssp             TTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             ccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence            1000  011223455666666667777777 999999999999999 89999999 999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.74  E-value=1.5e-18  Score=167.93  Aligned_cols=128  Identities=15%  Similarity=0.031  Sum_probs=82.3

Q ss_pred             cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEE-----------EEeccCCCCChHHHHHh------ccccCc
Q 023913           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMR------NGALPE  135 (275)
Q Consensus        74 ~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~-----------i~~~d~~~~~~~~~~~~------ig~v~q  135 (275)
                      +-....+|++++|+||||||||||+|+|+|+++|+ |++.           +.+.++...........      +.++.+
T Consensus        18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (538)
T 3ozx_A           18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEY   97 (538)
T ss_dssp             CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTG
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhh
Confidence            34455679999999999999999999999999998 8762           11211110000000001      111111


Q ss_pred             hhHHHHHhcCCCccchHHHH------HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          136 ERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~------~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                      .+       .....+..+.+      ..+.+.++.+......++.+.+ |+||+||++||++|+ +|+|+||| ||+++|
T Consensus        98 ~~-------~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD  170 (538)
T 3ozx_A           98 AS-------KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD  170 (538)
T ss_dssp             GG-------TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred             hh-------hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence            10       00001111111      1234466777777777888888 999999999999999 89999999 899998


Q ss_pred             cc
Q 023913          207 IP  208 (275)
Q Consensus       207 ~~  208 (275)
                      ..
T Consensus       171 ~~  172 (538)
T 3ozx_A          171 VR  172 (538)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.73  E-value=8.9e-18  Score=164.58  Aligned_cols=113  Identities=19%  Similarity=0.081  Sum_probs=80.3

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCCCccch
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAAI  151 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~~~~~~  151 (275)
                      |++++|+||||||||||+++|+|+++|+ |+.      +.       ...++|+||+..        +++......... 
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~-  443 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL-  443 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCSBHHHHHHHHCSSTTT-
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCccHHHHHHHHhhcccc-
Confidence            4899999999999999999999999998 852      11       124667766521        111111100000 


Q ss_pred             HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          152 REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       152 ~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        ......+.++.+......+..+.+ |+||+||++|||+|+ +|+|+||| ||+++|...
T Consensus       444 --~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~  502 (608)
T 3j16_B          444 --NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ  502 (608)
T ss_dssp             --SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHH
T ss_pred             --cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence              112233467777766677777888 999999999999999 89999999 999999643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.71  E-value=1e-17  Score=154.13  Aligned_cols=182  Identities=20%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh------------cCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET------------GGC  146 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~------------~~~  146 (275)
                      ++.+++|+|++|||||||+|.|++.+.++ +++.+.+.|+.....      .|.+.++...+..+            ++|
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~------~g~~l~d~~rm~~~~~~~~~~v~~~~~~~  146 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTS------GGSLLGDKTRMTELSRDMNAYIRPSPTRG  146 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------------CCSTTCTTEEEECC----
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCc------CcchhchHHHHHHhcCCCCEEEEecCCcc
Confidence            48899999999999999999999998887 999999999875421      11111111111111            122


Q ss_pred             CccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecC
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKT  226 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~  226 (275)
                      .++....+.   .+.+..+ .....+.+++|+.|..+...-....++..++++|++.+.+.+......+..++++|+||+
T Consensus       147 ~lgg~tr~~---~~~~~~~-~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~  222 (349)
T 2www_A          147 TLGGVTRTT---NEAILLC-EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKS  222 (349)
T ss_dssp             -----CTTH---HHHHHHH-HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCC
T ss_pred             ccccchHHH---HHHHHhh-ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeee
Confidence            222111111   1122222 234678899998886544322233347788999988775433222233567899999999


Q ss_pred             CCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhcccc
Q 023913          227 DLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       227 Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      |+.+...  ...+.+...++.++|     ..+++++|+++++|+++|++.+.
T Consensus       223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~  274 (349)
T 2www_A          223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMK  274 (349)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHH
Confidence            9975411  123344444444444     46799999999999999988653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.69  E-value=3.3e-17  Score=167.02  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=45.6

Q ss_pred             ccccccCCCCCCC-CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           55 SHEPIYSPGYFSR-RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      .+..+.|++   . +.++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+
T Consensus       675 ~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          675 TNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             EeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            444555554   3 34455555666889999999999999999999999999999 9998753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.68  E-value=3.4e-19  Score=158.48  Aligned_cols=149  Identities=17%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHH--------hcCCCccchHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE--------TGGCPHAAIRE  153 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~--------~~~~~~~~~~~  153 (275)
                      .++|+||||||||||+|+|+|++.|+ |++.+.+.++...   ..++.++|++|+......        ++......  .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~--~   78 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE--N   78 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCT--T
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccH--H
Confidence            68999999999999999999999998 9999888766432   224568999997532111        11111100  0


Q ss_pred             HHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEeCC-CCCCccccc-cccc--cccCEEEEecCCC
Q 023913          154 DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDKIPRKG-GPGI--TQADLLVINKTDL  228 (275)
Q Consensus       154 ~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD~t-~g~d~~~~~-~~~i--~~adiivlNK~Dl  228 (275)
                      ...    .+..+......++...+ |+||+||+.+||+++  .++++||+ .+++..... ...+  ..+-++|++|+|.
T Consensus        79 ~~~----~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~--~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~  152 (270)
T 3sop_A           79 CWE----PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHC--CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADT  152 (270)
T ss_dssp             CSH----HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCE--EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGG
T ss_pred             HHH----HHHHHHHHHHHhhhHHhcCcccchhhhhheeee--eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecccc
Confidence            001    11111111122333344 999999999998865  48999954 777754321 1111  1456788999999


Q ss_pred             CccchhhHHHHHHHHH
Q 023913          229 ASAIGADLAVMERDAL  244 (275)
Q Consensus       229 ~~~~~~~~~~~~~~i~  244 (275)
                      ++.  .++..+.+.++
T Consensus       153 lt~--~e~~~~k~~i~  166 (270)
T 3sop_A          153 MTL--EEKSEFKQRVR  166 (270)
T ss_dssp             SCH--HHHHHHHHHHH
T ss_pred             CCH--HHHHHHHHHHH
Confidence            987  55555554444

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.68  E-value=4.2e-18  Score=153.76  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=106.4

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH--HHhccccCchhHHHHHhcCCCccc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGGCPHAA  150 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~~~~~~~~~~~  150 (275)
                      ..+|++++|+||||||||||++.|+|+++|+ |+|.+.+.|......    ..+  +..++|++|++.     ...+..+
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~~~~~~~  171 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-----KAKAATV  171 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-------CCCHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-----ccCHHHH
Confidence            4679999999999999999999999999988 999999988654211    122  246899998642     0011111


Q ss_pred             hHHHHHHHH------HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCcccccccccc---c
Q 023913          151 IREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGIT---Q  217 (275)
Q Consensus       151 ~~~~~~~~~------~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i~---~  217 (275)
                      ..+.+....      ..++.++.....+..+.| |   +||+.+||+++ +|.  ++++||++++|...... .+.   .
T Consensus       172 v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~-~~~~~~g  247 (302)
T 3b9q_A          172 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR-EFNEVVG  247 (302)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHH-HHHHHTC
T ss_pred             HHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHH-HHHHhcC
Confidence            111111100      011111111111222223 4   78999999998 798  99999999998754331 221   2


Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ..+|+++|.|.....+..+    ..+...  +.||.++.  .|+.++++..
T Consensus       248 ~t~iiiThlD~~~~~g~~l----~~~~~~--~~pi~~i~--~Ge~~~dl~~  290 (302)
T 3b9q_A          248 ITGLILTKLDGSARGGCVV----SVVEEL--GIPVKFIG--VGEAVEDLQP  290 (302)
T ss_dssp             CCEEEEECCSSCSCTHHHH----HHHHHH--CCCEEEEE--CSSSGGGEEE
T ss_pred             CCEEEEeCCCCCCccChhe----ehHHHH--CCCEEEEe--CCCChhhccc
Confidence            4689999998765533333    222333  46788776  4766665543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=6.8e-16  Score=142.02  Aligned_cols=182  Identities=17%  Similarity=0.164  Sum_probs=112.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh------------cC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET------------GG  145 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~------------~~  145 (275)
                      .+..+++|+|++|+|||||++.|+..+... .++.++..|+.....      .|.+.++...+...            ++
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~------~g~~l~d~~~~~~~~~~~~~~i~~~~~~  150 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRT------GGSILGDKTRMARLAVHPNAYIRPSPTS  150 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------------CHHHHTCTTEEEECCC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcc------cchhccchhhHHhhccCCCeeEEECCCC
Confidence            456799999999999999999999887655 689999888765321      11111111111111            12


Q ss_pred             CCccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEec
Q 023913          146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINK  225 (275)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK  225 (275)
                      +.++...   ....+.+..+ .....+.+++++.|..+........++..|+++|+..++..+......++.++++|+||
T Consensus       151 ~~~~~~~---~~t~d~i~~~-~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK  226 (355)
T 3p32_A          151 GTLGGVT---RATRETVVLL-EAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNK  226 (355)
T ss_dssp             CCHHHHH---HHHHHHHHHH-HHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEEC
T ss_pred             ccccchh---HHHHHHHHHH-hhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEEC
Confidence            2222221   2223344322 34567889999888766544444455889999998877665444434567899999999


Q ss_pred             CCCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913          226 TDLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       226 ~Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +|+.+...  ...+.+.+.+..+.+     ..+|+++|+++++|+++|++.+
T Consensus       227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i  278 (355)
T 3p32_A          227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTV  278 (355)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred             CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence            99976521  122334444444432     4789999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.65  E-value=1.4e-17  Score=153.55  Aligned_cols=175  Identities=14%  Similarity=0.102  Sum_probs=108.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH--HHhccccCchhHHHHHhcCCCccc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGGCPHAA  150 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~~~~~~~~~~~  150 (275)
                      ..+|++++|+|+||||||||++.|+|+++|+ |+|.+.+.|......    ..+  +..++|++|+...     ..+..+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-----~~p~~t  228 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-----AKAATV  228 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-----CCHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-----cChhhh
Confidence            4579999999999999999999999999988 999999988654211    112  3468999886310     011111


Q ss_pred             hHHHHHHHH------HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCcccccccccc---c
Q 023913          151 IREDISINL------GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGIT---Q  217 (275)
Q Consensus       151 ~~~~~~~~~------~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i~---~  217 (275)
                      ..+.+....      ..++.++.....+..+.| |   +||+.++|+++ +|.  ++|+||++++|...... .+.   .
T Consensus       229 v~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~-~~~~~~g  304 (359)
T 2og2_A          229 LSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAR-EFNEVVG  304 (359)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHH-HHHHHTC
T ss_pred             HHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHH-HHHHhcC
Confidence            111111100      001111111111222223 4   79999999998 798  99999999998754332 221   2


Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      ..+|+++|.|.....+..+..    +...  +.||.++.  .|+.++++...
T Consensus       305 ~t~iiiThlD~~~~gG~~lsi----~~~~--~~pI~~ig--~Ge~~~Dl~~f  348 (359)
T 2og2_A          305 ITGLILTKLDGSARGGCVVSV----VEEL--GIPVKFIG--VGEAVEDLQPF  348 (359)
T ss_dssp             CCEEEEESCTTCSCTHHHHHH----HHHH--CCCEEEEE--CSSSGGGEEEC
T ss_pred             CeEEEEecCcccccccHHHHH----HHHh--CCCEEEEe--CCCChHhccCC
Confidence            468999999877654444332    2222  46788876  47777766543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.65  E-value=8.3e-17  Score=147.45  Aligned_cols=188  Identities=17%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             ccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-hHHHHHhccccCchhHHHHH----hcCCCc
Q 023913           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVE----TGGCPH  148 (275)
Q Consensus        75 ~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~----~~~~~~  148 (275)
                      .....++.+++|+|++|||||||++.|++.+.+. +++.+++.++.... ...+..       +...+..    .+++.+
T Consensus        50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~-------d~~~~~~~~~~~~~~i~  122 (341)
T 2p67_A           50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG-------DKTRMNDLARAEAAFIR  122 (341)
T ss_dssp             GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEE
T ss_pred             CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceec-------ccchHHhhccCCCceee
Confidence            3445679999999999999999999999998877 89999999886532 111110       0000000    011111


Q ss_pred             cch-----HHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEE
Q 023913          149 AAI-----REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI  223 (275)
Q Consensus       149 ~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivl  223 (275)
                      +..     ........+.+..+ ....++.+++++.|..+....+...+|..++++|+..+...+.....+...+.++|+
T Consensus       123 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~  201 (341)
T 2p67_A          123 PVPSSGHLGGASQRARELMLLC-EAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI  201 (341)
T ss_dssp             EECC-----CHHHHHHHHHHHH-HHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEE
T ss_pred             cCccccccchhHHHHHHHHHHh-hccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEE
Confidence            110     00111111222221 134678899998886654444334448899999987765433222123467899999


Q ss_pred             ecCCCCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913          224 NKTDLASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       224 NK~Dl~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ||+|+.....  ..++.+.+.+..+++     ..+++++|+++++|++++++.+
T Consensus       202 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l  255 (341)
T 2p67_A          202 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI  255 (341)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred             ECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHH
Confidence            9999986511  112234444444443     4679999999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=2.2e-19  Score=153.84  Aligned_cols=109  Identities=16%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-HhcCCCccchHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS  156 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~-~~~~~~~~~~~~~~~  156 (275)
                      .+|++++|+||||||||||+++|+|+ +|+ |+|....  +.. ....+++.+||+||++.+++ .+..    .....+.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~--~~~-~~~~~~~~ig~v~q~~~enl~~~~~----~~~~~~~   91 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII--LTR-PAVEAGEKLGFLPGTLNEKIDPYLR----PLHDALR   91 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE--EEE-CSCCTTCCCCSSCC------CTTTH----HHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE--ecC-CchhhhcceEEecCCHHHHHHHHHH----HHHHHHH
Confidence            67999999999999999999999999 887 9884321  110 11123467999999863333 1100    0000000


Q ss_pred             H--HHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCC
Q 023913          157 I--NLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGG  204 (275)
Q Consensus       157 ~--~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g  204 (275)
                      .  ....+..+...         ..||+||++|||+|+ +|+++||| |+++
T Consensus        92 ~~~~~~~~~~~l~~---------glGq~qrv~lAraL~~~p~lllLDEPts~  134 (208)
T 3b85_A           92 DMVEPEVIPKLMEA---------GIVEVAPLAYMRGRTLNDAFVILDEAQNT  134 (208)
T ss_dssp             TTSCTTHHHHHHHT---------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred             HhccHHHHHHHHHh---------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            0  00011111111         229999999999999 99999999 7777

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.64  E-value=2.1e-16  Score=156.80  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=74.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHH---------------------HHHHhccCCC-CcEEEEeccCC---CCCh
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLAAVTNDIF---TKED  123 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl---------------------~~L~g~l~~~-g~i~i~~~d~~---~~~~  123 (275)
                      .++.+.++...+|++++|+||||||||||+                     +++.++..|+ +.+......+.   ....
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~  111 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS  111 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence            456666666788999999999999999998                     7888887776 54432211110   0001


Q ss_pred             HHHHHhccccCchhHHH-------------------HHhcCCCccch------H---H--------HHHHHHHHHHHhhc
Q 023913          124 GEFLMRNGALPEERIRA-------------------VETGGCPHAAI------R---E--------DISINLGPLEELSN  167 (275)
Q Consensus       124 ~~~~~~ig~v~q~~~~~-------------------~~~~~~~~~~~------~---~--------~~~~~~~~L~~l~~  167 (275)
                      ...++.+|+++|.....                   ..++...+..+      .   .        ........++.++.
T Consensus       112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL  191 (670)
T 3ux8_A          112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL  191 (670)
T ss_dssp             ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred             ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence            11223456655532110                   00111111100      0   0        00011123455544


Q ss_pred             ccc-ccccccc-ChhHHHHHHHHHHhc-Cce--EEEEe-CCCCCCccc
Q 023913          168 LFK-ADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR  209 (275)
Q Consensus       168 ~~~-~d~~~~e-S~G~~q~~~laral~-~~~--vlllD-~t~g~d~~~  209 (275)
                      ... .++.+.+ |+||+||++|||+|+ +|+  |+||| ||+++|...
T Consensus       192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~  239 (670)
T 3ux8_A          192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD  239 (670)
T ss_dssp             TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG
T ss_pred             chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH
Confidence            432 4666777 999999999999999 777  99999 999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.62  E-value=2.9e-16  Score=133.74  Aligned_cols=179  Identities=27%  Similarity=0.341  Sum_probs=113.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
                      +..+++|+|++|||||||++.|++.+....++.++.+++....+....+..+.-.    . ...++|.|+.....+.   
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~---  100 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKA----E-AISTGKECHLDAHMIY---  100 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEE----E-ECCCTTCSSCCHHHHH---
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcE----E-EecCCceeecccHHHH---
Confidence            4678999999999999999999987544467888888876422222222211100    0 0012333332222111   


Q ss_pred             HHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHH
Q 023913          160 GPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLA  237 (275)
Q Consensus       160 ~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~  237 (275)
                      +.+.   .....+.+++|+.|+ ..+..+  .+. +..++++|++.+.........++..+.++|+||+|+.+......+
T Consensus       101 ~~~~---~~~~~d~iiidt~G~~~~~~~~--~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          101 HRLK---KFSDCDLLLIENVGNLICPVDF--DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             TTGG---GGTTCSEEEEEEEEBSSGGGGC--CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHH
T ss_pred             HHHH---hcCCCCEEEEeCCCCCCCCchh--ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHH
Confidence            1111   233578889997784 111000  112 568899998877654433444567889999999999754223567


Q ss_pred             HHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+.++++++..+++++|+++++|++++++.+.
T Consensus       176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~  209 (221)
T 2wsm_A          176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLR  209 (221)
T ss_dssp             HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHH
Confidence            7777888888889999999999999999987653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.61  E-value=1.7e-16  Score=144.04  Aligned_cols=180  Identities=19%  Similarity=0.236  Sum_probs=111.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      +-++++|+|+||||||||||.|++.. +..+++++.++.+... +.......   ...  .....+||.||+.+.++...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~-~~~~~aVi~~d~G~i~idg~~l~~~---~~~--~~el~~gCicc~~~~~~~~~   76 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ-HGYKIAVIENEFGEVSVDDQLIGDR---ATQ--IKTLTNGCICCSRSNELEDA   76 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC-CCCCEEEECSSCCSCCEEEEEECTT---SCE--EEEETTSCEEECTTSCHHHH
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc-CCCcEEEEEecCcccCccHHHHhCC---CCC--EEEECCCceEEcccHHHHHH
Confidence            46899999999999999999999986 2234555555544432 11000000   000  01125799999987665443


Q ss_pred             HHHH-HHhhcc-cccccccccChhHHHHHHHHHHh-----------cCceEEEEeCCCCCCccc---cccccccccCEEE
Q 023913          159 LGPL-EELSNL-FKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIPR---KGGPGITQADLLV  222 (275)
Q Consensus       159 ~~~L-~~l~~~-~~~d~~~~eS~G~~q~~~laral-----------~~~~vlllD~t~g~d~~~---~~~~~i~~adiiv  222 (275)
                      ...+ ..+... ..+++.+.|+.|...+..+++.+           ++..+.++|.....+...   ....|...+|+++
T Consensus        77 l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il  156 (318)
T 1nij_A           77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence            3222 111111 13588899966643222222221           155677889766544322   2346678999999


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +||.|+.++  .  +.+.+.+++++|.++|+.+|. ....++.+++..
T Consensus       157 l~k~dl~de--~--~~l~~~l~~l~~~~~ii~~sh-~~~~~~~l~~~~  199 (318)
T 1nij_A          157 LTKTDVAGE--A--EKLHERLARINARAPVYTVTH-GDIDLGLLFNTN  199 (318)
T ss_dssp             EECTTTCSC--T--HHHHHHHHHHCSSSCEEECCS-SCCCGGGGSCCC
T ss_pred             EECcccCCH--H--HHHHHHHHHhCCCCeEEEecc-cCCCHHHHhCCC
Confidence            999999965  2  778888888999999998775 345667676643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.59  E-value=8e-16  Score=156.85  Aligned_cols=126  Identities=17%  Similarity=0.115  Sum_probs=82.3

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh-------
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER-------  137 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-------  137 (275)
                      |+++.++.+.++...+|++++|+|||||||||||++|+|     |.+  .+.+...      ..+++|++|+.       
T Consensus       445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~------~~~~~~v~q~~~~~~~~l  511 (986)
T 2iw3_A          445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE------ECRTVYVEHDIDGTHSDT  511 (986)
T ss_dssp             ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT------TSCEEETTCCCCCCCTTS
T ss_pred             ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc------ceeEEEEcccccccccCC
Confidence            334555556666678899999999999999999999995     121  1111100      01245666542       


Q ss_pred             --HHHHHhcCCCccchHHHHHHHHHHHHHhhcc-ccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          138 --IRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       138 --~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                        .+++.. ...  ..   ...+.+.|+.++.. ...++.+.+ |+||+||++|||+|+ +|+|+||| |++++|...
T Consensus       512 tv~e~l~~-~~~--~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~  583 (986)
T 2iw3_A          512 SVLDFVFE-SGV--GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN  583 (986)
T ss_dssp             BHHHHHHT-TCS--SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred             cHHHHHHH-hhc--CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence              122222 000  01   22334567777653 345666667 999999999999999 99999999 999998654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.56  E-value=4.4e-15  Score=147.24  Aligned_cols=50  Identities=22%  Similarity=0.325  Sum_probs=37.1

Q ss_pred             HHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cc---eEEEEe-CCCCCCccc
Q 023913          160 GPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DY---IIYIID-VSGGDKIPR  209 (275)
Q Consensus       160 ~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~---~vlllD-~t~g~d~~~  209 (275)
                      +.+..+.... ..+..+.+ |+||+||++|||+|+ +|   +|+|+| ||+++|...
T Consensus       525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~  581 (670)
T 3ux8_A          525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD  581 (670)
T ss_dssp             HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH
T ss_pred             HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH
Confidence            3455554432 34556666 999999999999998 44   699999 999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.55  E-value=1.8e-14  Score=130.05  Aligned_cols=167  Identities=13%  Similarity=0.076  Sum_probs=103.5

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh-H---HH--HHhccccCchhHHHHHhcCCCccchH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-G---EF--LMRNGALPEERIRAVETGGCPHAAIR  152 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~-~---~~--~~~ig~v~q~~~~~~~~~~~~~~~~~  152 (275)
                      +|++++|+||||||||||+++|+++++|+ |+|.+.+.|...... .   .+  +..++|++|+..      ..+.....
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~------~~p~~~v~  174 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG------TDSAALAY  174 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT------CCHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC------CCHHHHHH
Confidence            68999999999999999999999999998 999999988754321 1   12  346889998641      11111111


Q ss_pred             HHHHHHHHHHHHhhccccccccccc------------ChhHHHHHHHHHHhc-Cce--EEEEeCCCCCCccccccccc--
Q 023913          153 EDISINLGPLEELSNLFKADLLLCE------------SGGDNLAANFSRELA-DYI--IYIIDVSGGDKIPRKGGPGI--  215 (275)
Q Consensus       153 ~~~~~~~~~L~~l~~~~~~d~~~~e------------S~G~~q~~~laral~-~~~--vlllD~t~g~d~~~~~~~~i--  215 (275)
                      +.+..   ...     ...+..+.+            +...+|++.+||+++ +|.  ++++|++++.+.........  
T Consensus       175 ~~v~~---~~~-----~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~  246 (304)
T 1rj9_A          175 DAVQA---MKA-----RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA  246 (304)
T ss_dssp             HHHHH---HHH-----HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH
T ss_pred             HHHHH---HHh-----CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHH
Confidence            11110   000     011222222            334478999999998 676  77899988876443221111  


Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ....+|++||.|.....+..+    ......  +.||.++.  .|+.++++..
T Consensus       247 ~~~t~iivTh~d~~a~gg~~l----~i~~~~--~~pi~~ig--~Ge~~~dl~~  291 (304)
T 1rj9_A          247 VGLTGVIVTKLDGTAKGGVLI----PIVRTL--KVPIKFVG--VGEGPDDLQP  291 (304)
T ss_dssp             HCCSEEEEECTTSSCCCTTHH----HHHHHH--CCCEEEEE--CSSSTTCEEE
T ss_pred             cCCcEEEEECCcccccccHHH----HHHHHH--CCCeEEEe--CCCChhhccc
Confidence            134789999998765432222    222233  47888887  4777765543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.2e-17  Score=153.92  Aligned_cols=123  Identities=16%  Similarity=-0.032  Sum_probs=79.5

Q ss_pred             cccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-c-EEEEeccCCCCChHHHHHhccccCchhHHHH---------
Q 023913           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIRAV---------  141 (275)
Q Consensus        74 ~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~---------  141 (275)
                      .++...+|++++|+||||||||||+|+|+|++.|+ | + |.+++ ++        ++.++|+||+...+.         
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~--------~~~i~~vpq~~~l~~~~~~~tv~e  201 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DP--------QQPIFTVPGCISATPISDILDAQL  201 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CT--------TSCSSSCSSCCEEEECCSCCCTTC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Cc--------cCCeeeeccchhhcccccccchhh
Confidence            34445679999999999999999999999999998 9 8 87776 21        356899998752100         


Q ss_pred             -HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHH--hc-CceE----EEEeC--CCCCCcc
Q 023913          142 -ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE--LA-DYII----YIIDV--SGGDKIP  208 (275)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~lara--l~-~~~v----lllD~--t~g~d~~  208 (275)
                       .++...... ......+...++.++.....+  ..+ |+||+||+++||+  |+ +|++    +|+|.  ++++|..
T Consensus       202 ni~~~~~~~~-~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~  276 (460)
T 2npi_A          202 PTWGQSLTSG-ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN  276 (460)
T ss_dssp             TTCSCBCBSS-CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred             hhcccccccC-cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence             011100000 000011112233333322222  334 9999999999999  98 9999    99995  5566654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.51  E-value=7.1e-15  Score=125.47  Aligned_cols=180  Identities=32%  Similarity=0.423  Sum_probs=114.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHh-cCCCccchHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISIN  158 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~-~~~~~~~~~~~~~~~  158 (275)
                      +..+++|+|+.|+|||||++.++.......++.+++.++....+....+..+.      ....+ +++.++....+.   
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~------~~~~~~~~~~~~l~~~~~---  107 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA------KVVPLNTGKECHLDAHLV---  107 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC------EEEEEECTTCSSCCHHHH---
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCC------cEEEecCCceEeccHHHH---
Confidence            46789999999999999999999875544677778877753223222222111      00111 244433222222   


Q ss_pred             HHHHHHhhcccccccccccChhH-HHHHHHHHHhc-CceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhH
Q 023913          159 LGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL  236 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~-~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~  236 (275)
                      .+.+..+ ....++.+++++.|. ..+..  .... ...+.++|+..+.+.+..+..++..++++|+||+|+.+......
T Consensus       108 ~~~~~~l-~~~~~d~~~id~~g~i~~~~s--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~  184 (226)
T 2hf9_A          108 GHALEDL-NLDEIDLLFIENVGNLICPAD--FDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADI  184 (226)
T ss_dssp             HHHHTTS-CGGGCSEEEEECCSCSSGGGG--CCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCH
T ss_pred             HHHHHHH-hcCCCCEEEEeCCCCccCcch--hhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHH
Confidence            2233322 133568888887662 11100  0112 44567888666655555555667889999999999975421246


Q ss_pred             HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          237 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       237 ~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+.+.++++++..+++++|+++++|++++++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  219 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIE  219 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHH
Confidence            67777778888889999999999999999987653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.50  E-value=5.7e-14  Score=128.01  Aligned_cols=167  Identities=20%  Similarity=0.335  Sum_probs=104.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH----HHHhcc--ccCchhHHHHHhcCCCccch
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNG--ALPEERIRAVETGGCPHAAI  151 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~----~~~~ig--~v~q~~~~~~~~~~~~~~~~  151 (275)
                      .+|++++|+||||||||||++.|+++++|+ |+|.+.+.|+......+    +.+++|  +++|..      +..+....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~------~~~p~~~v  200 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY------GADPAAVA  200 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT------TCCHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc------cCCHHHHH
Confidence            569999999999999999999999999998 99999999986544322    234455  566542      11111111


Q ss_pred             HHHHHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCccccccccc---cccC
Q 023913          152 REDISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGI---TQAD  219 (275)
Q Consensus       152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i---~~ad  219 (275)
                      .+       .+.. ......+.+++++.|.        .+...+++++. ++.++++|++++.+...... .+   ....
T Consensus       201 ~e-------~l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~-~~~~~~~it  271 (328)
T 3e70_C          201 YD-------AIQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQAR-QFNEAVKID  271 (328)
T ss_dssp             HH-------HHHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH-HHHHHSCCC
T ss_pred             HH-------HHHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHH-HHHHhcCCC
Confidence            11       1111 1112345555553332        23445677777 88999999988865433221 12   1356


Q ss_pred             EEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          220 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       220 iivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      .|++||.|.....+..+    ..+...  +.||.+++  +|++++++..
T Consensus       272 ~iilTKlD~~a~~G~~l----~~~~~~--~~pi~~i~--~Ge~v~dl~~  312 (328)
T 3e70_C          272 GIILTKLDADARGGAAL----SISYVI--DAPILFVG--VGQGYDDLRP  312 (328)
T ss_dssp             EEEEECGGGCSCCHHHH----HHHHHH--TCCEEEEE--CSSSTTCEEE
T ss_pred             EEEEeCcCCccchhHHH----HHHHHH--CCCEEEEe--CCCCcccccc
Confidence            89999999765533332    233333  57898888  6888866544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.50  E-value=2.2e-15  Score=124.54  Aligned_cols=114  Identities=10%  Similarity=0.040  Sum_probs=64.3

Q ss_pred             ccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        75 ~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      ++...+|++++|+||||||||||++++.+-     ... ...       ..+ +  |+++|++....     ......+.
T Consensus         3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~-----~~~-~~~-------d~~-~--g~~~~~~~~~~-----~~~~~~~~   61 (171)
T 4gp7_A            3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKP-----TEV-ISS-------DFC-R--GLMSDDENDQT-----VTGAAFDV   61 (171)
T ss_dssp             EEEEESSEEEEEECCTTSCHHHHHHHHSCG-----GGE-EEH-------HHH-H--HHHCSSTTCGG-----GHHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCHHHHHHHHccC-----CeE-Ecc-------HHH-H--HHhcCcccchh-----hHHHHHHH
Confidence            344567999999999999999999986532     111 111       111 1  45555431000     00000011


Q ss_pred             HHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ...........+.....+.....|+|++||+++|++++ +|.++++| |++++|...
T Consensus        62 ~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~  118 (171)
T 4gp7_A           62 LHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN  118 (171)
T ss_dssp             HHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence            11111111112222222333334999999999999999 89999999 777777643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.49  E-value=2.2e-14  Score=145.54  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~  209 (275)
                      .+.|+.+.+.. ..+..+.+ |+||+||+.||++|+ +   |.|+||| ||+|+|...
T Consensus       826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~  883 (972)
T 2r6f_A          826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD  883 (972)
T ss_dssp             HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH
T ss_pred             HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH
Confidence            34566666554 45566666 999999999999998 4   4999999 999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.49  E-value=5.9e-15  Score=133.70  Aligned_cols=135  Identities=16%  Similarity=0.068  Sum_probs=79.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      ..+|++++|+|+||||||||+++|+|+++|. |  ++.++..+..-... ..+..+++..        ..+.+..   .+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~--------~~g~~~~---~d  154 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMH--------RKGFPES---YN  154 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTT--------CTTSGGG---BC
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHH--------hcCCChH---HH
Confidence            4669999999999999999999999999886 5  35444433221111 2222222110        0011111   11


Q ss_pred             HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccccccccccccCEEEEecCC
Q 023913          155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPGITQADLLVINKTD  227 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~~~~~i~~adiivlNK~D  227 (275)
                      .....+.|+.+. ....+..+.+ |+||+||+++|++++ +|+|+|+| |+...+...  ...-...|..|+-.+|
T Consensus       155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--~~l~~~~D~~I~V~a~  227 (312)
T 3aez_A          155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--LMVSDLFDFSLYVDAR  227 (312)
T ss_dssp             HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--CCGGGGCSEEEEEEEC
T ss_pred             HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--HHHHHhcCcEEEEECC
Confidence            233344566654 2223344445 999999999999988 89999999 555554211  1112345655554444

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.47  E-value=8.9e-14  Score=132.50  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=103.7

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HH--HHHhccccCchhHHHHHhcCCCcc
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GE--FLMRNGALPEERIRAVETGGCPHA  149 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~--~~~~ig~v~q~~~~~~~~~~~~~~  149 (275)
                      ...+|++++|+|+||||||||+++|+|+++++ |+|.+.+.+......    ..  .++.++|++|...      ..+..
T Consensus       289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~------~~p~~  362 (503)
T 2yhs_A          289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG------ADSAS  362 (503)
T ss_dssp             CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT------CCHHH
T ss_pred             eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC------cCHHH
Confidence            34669999999999999999999999999988 999998877653210    11  2456899888631      01111


Q ss_pred             chHHHHHHHHHHHHHhhcccccccccccChhH-----------HHHHHHHHHhc--Cc--eEEEEeCCCCCCcccccccc
Q 023913          150 AIREDISINLGPLEELSNLFKADLLLCESGGD-----------NLAANFSRELA--DY--IIYIIDVSGGDKIPRKGGPG  214 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~-----------~q~~~laral~--~~--~vlllD~t~g~d~~~~~~~~  214 (275)
                      +.       .+.+... ....++.+++++.|.           .+++.+++++.  .|  .++++|+++|.+..... ..
T Consensus       363 tV-------~e~l~~a-~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a-k~  433 (503)
T 2yhs_A          363 VI-------FDAIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA-KL  433 (503)
T ss_dssp             HH-------HHHHHHH-HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH-HH
T ss_pred             HH-------HHHHHHH-HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH-HH
Confidence            11       1122211 223567777775553           23455556553  24  47889999886543221 11


Q ss_pred             cc---ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          215 IT---QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       215 i~---~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      |.   ..+.+|+||.|.....+..+    ..+...  +.||.++.  .|++++++..
T Consensus       434 f~~~~~itgvIlTKLD~takgG~~l----si~~~~--~~PI~fig--~Ge~vdDL~~  482 (503)
T 2yhs_A          434 FHEAVGLTGITLTKLDGTAKGGVIF----SVADQF--GIPIRYIG--VGERIEDLRP  482 (503)
T ss_dssp             HHHHTCCSEEEEECGGGCSCCTHHH----HHHHHH--CCCEEEEE--CSSSGGGEEE
T ss_pred             HHhhcCCCEEEEEcCCCcccccHHH----HHHHHH--CCCEEEEe--cCCChhhccc
Confidence            21   24679999999755433222    222333  46788876  5888876544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.46  E-value=3.1e-16  Score=134.75  Aligned_cols=129  Identities=12%  Similarity=-0.041  Sum_probs=70.7

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCCh-HHHHHhccccCchhHHHHHhc-CCC-
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETG-GCP-  147 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~~~~~-~~~-  147 (275)
                      +.+.++...+|++++|+||||||||||+++|+|++ | |.+.+ +.++.+..+ ...++.++|++|++..+.... ... 
T Consensus        13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   89 (218)
T 1z6g_A           13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF   89 (218)
T ss_dssp             ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred             ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence            33444555679999999999999999999999998 6 88887 655433211 112357899999875443211 000 


Q ss_pred             --ccch-----HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHH-----HHHhc-CceEEEEe-CCCCCC
Q 023913          148 --HAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANF-----SRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       148 --~~~~-----~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~l-----aral~-~~~vlllD-~t~g~d  206 (275)
                        ..++     ......+.+.++.... .   .+-.+ |+||+||+++     +++|+ .|.+.+|| ++...+
T Consensus        90 l~~~~~~~~~~g~~~~~i~~~l~~~~~-~---il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d  159 (218)
T 1z6g_A           90 LEYDNYANNFYGTLKSEYDKAKEQNKI-C---LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN  159 (218)
T ss_dssp             EEEEEETTEEEEEEHHHHHHHHHTTCE-E---EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred             hhhhhcccccCCCcHHHHHHHHhCCCc-E---EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence              0000     0001112223322110 0   11123 9999999998     55666 56677777 444444

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.45  E-value=3.2e-16  Score=141.27  Aligned_cols=170  Identities=16%  Similarity=0.055  Sum_probs=75.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhc-cCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH-----HhcCCCc-cchHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-----ETGGCPH-AAIRED  154 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~-l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~-----~~~~~~~-~~~~~~  154 (275)
                      .++|+|+||||||||+++|+|. +.|+ | +.+.+.++...   ...+.+++++|......     .+.+... ....+.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t---~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT---VQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc---ceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            3499999999999999999997 6776 7 66555443221   11345677776532110     1111100 000000


Q ss_pred             HHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEe-CCC-CCCcccc-ccccc--cccCEEEEecCCC
Q 023913          155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIID-VSG-GDKIPRK-GGPGI--TQADLLVINKTDL  228 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD-~t~-g~d~~~~-~~~~i--~~adiivlNK~Dl  228 (275)
                      .......+..     ..+..+.+ |+|++|++.++|+++   ++++| |+. ++|.... ....+  ...-++|+||+|+
T Consensus        96 ~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~---ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl  167 (301)
T 2qnr_A           96 FKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC---CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADT  167 (301)
T ss_dssp             CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE---EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGG
T ss_pred             HHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh---eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            0000111111     12233334 999999988777764   66666 655 4765432 11111  1245788999999


Q ss_pred             CccchhhH----HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          229 ASAIGADL----AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       229 ~~~~~~~~----~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+.  .++    +++.+.++..  +.+++++|++++ ++++++..
T Consensus       168 ~~~--~e~~~~~~~~~~~~~~~--~~~~~e~Sa~~~-~v~e~f~~  207 (301)
T 2qnr_A          168 LTL--KERERLKKRILDEIEEH--NIKIYHLPDAES-DEDEDFKE  207 (301)
T ss_dssp             SCH--HHHHHHHHHHHHHHHHT--TCCCCCCC----------CHH
T ss_pred             CCH--HHHHHHHHHHHHHHHHc--CCeEEecCCccc-cccHHHHH
Confidence            865  233    3444555554  478999999999 99887653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.45  E-value=3.2e-14  Score=143.55  Aligned_cols=51  Identities=24%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~  209 (275)
                      .+.|+.+.+.. ..+..+.+ |+||+||+.||++|+ +   |.|+||| ||+|+|...
T Consensus       711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~  768 (842)
T 2vf7_A          711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD  768 (842)
T ss_dssp             HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH
T ss_pred             HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence            44566666554 24555666 999999999999999 4   6999999 999998754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.44  E-value=1.6e-14  Score=120.53  Aligned_cols=105  Identities=18%  Similarity=0.016  Sum_probs=63.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L  162 (275)
                      +++|+||||||||||+++|+|++.    +.+.+.+..........+.+||++|+.      .+.... +        ..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~--------~~~   62 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F--------SSK   62 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E--------EET
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H--------Hhh
Confidence            689999999999999999999985    333433221111113456789998874      111000 0        000


Q ss_pred             HHhhccccccccccc-ChhHHHHHHHHHH-----hc-CceEEEEeC---CCCCCc
Q 023913          163 EELSNLFKADLLLCE-SGGDNLAANFSRE-----LA-DYIIYIIDV---SGGDKI  207 (275)
Q Consensus       163 ~~l~~~~~~d~~~~e-S~G~~q~~~lara-----l~-~~~vlllD~---t~g~d~  207 (275)
                       .+......+..+.+ |+||+||+++|++     ++ +|.++|+|+   ++++|.
T Consensus        63 -~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~  116 (178)
T 1ye8_A           63 -FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK  116 (178)
T ss_dssp             -TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred             -cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence             00000123344445 9999999999996     77 899999996   555664

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.43  E-value=5.8e-15  Score=138.40  Aligned_cols=99  Identities=11%  Similarity=0.048  Sum_probs=58.1

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (275)
                      +++|+||||||||||+|+|+|+++|+ |+|.+.+.+..         +.++++|.+. +..+.......+........+.
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---------~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~  140 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---------MERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTY  140 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------eeEEeccccc-cCCeeehHhhcccchHHHHHHH
Confidence            99999999999999999999999998 99877654331         1267777531 0000000000000000112334


Q ss_pred             HHHhhcccccccccccChh--HHHHHHHHHHhc
Q 023913          162 LEELSNLFKADLLLCESGG--DNLAANFSRELA  192 (275)
Q Consensus       162 L~~l~~~~~~d~~~~eS~G--~~q~~~laral~  192 (275)
                      ++.+..... +..+.-|+|  |+|++.+|++|+
T Consensus       141 L~~~~L~~~-~~~~~lS~G~~~kqrv~la~aL~  172 (413)
T 1tq4_A          141 LEKMKFYEY-DFFIIISATRFKKNDIDIAKAIS  172 (413)
T ss_dssp             HHHTTGGGC-SEEEEEESSCCCHHHHHHHHHHH
T ss_pred             HHHcCCCcc-CCeEEeCCCCccHHHHHHHHHHH
Confidence            555543322 222224777  999999999985

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.40  E-value=1.3e-13  Score=128.46  Aligned_cols=32  Identities=19%  Similarity=0.137  Sum_probs=29.1

Q ss_pred             ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~  209 (275)
                      |+||+||++||++|+ +|  +++||| |++++|...
T Consensus       297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~  332 (415)
T 4aby_A          297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA  332 (415)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH
T ss_pred             CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH
Confidence            999999999999998 88  999999 899998643

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.40  E-value=6.9e-14  Score=131.25  Aligned_cols=203  Identities=15%  Similarity=0.108  Sum_probs=107.8

Q ss_pred             CCcceeecCCCCccccCCCCCCCccccccCCCC----CC---CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGY----FS---RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~---~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-+..+.++..+......+..|..+..|..+-.    |.   ......+.++....++.++|+|+|||||||||++|++.
T Consensus       101 ~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          101 ELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             CEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             cEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            345556666666677777777776666665430    00   11112233344566999999999999999999999998


Q ss_pred             cCCCCcEEEEeccCCCCChHHHHHhccccCchh---HHHHHhcCCCc-----cchHHHHHHHHHHHHHhhccccc-cccc
Q 023913          105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER---IRAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLL  175 (275)
Q Consensus       105 l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~---~~~~~~~~~~~-----~~~~~~~~~~~~~L~~l~~~~~~-d~~~  175 (275)
                      .+     .+.+..+.+..     ..+|+++++.   .....+.+...     ..+...+....+....+...... +..+
T Consensus       181 ~~-----~i~~~~ftTl~-----p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~  250 (416)
T 1udx_A          181 HP-----KIAPYPFTTLS-----PNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL  250 (416)
T ss_dssp             CC-----EECCCTTCSSC-----CEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH
T ss_pred             Cc-----cccCcccceec-----ceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCH
Confidence            32     11122221111     1233333221   00000111100     00000000000000000000011 2222


Q ss_pred             cc-ChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEE
Q 023913          176 CE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF  254 (275)
Q Consensus       176 ~e-S~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~  254 (275)
                      .+ |.|++|++.++++|+                       ..+.++|+||+|+...  ..++.+.+.++..  +.+++.
T Consensus       251 ~~ls~g~~el~~la~aL~-----------------------~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~--g~~vi~  303 (416)
T 1udx_A          251 KTLETLRKEVGAYDPALL-----------------------RRPSLVALNKVDLLEE--EAVKALADALARE--GLAVLP  303 (416)
T ss_dssp             HHHHHHHHHHHHHCHHHH-----------------------HSCEEEEEECCTTSCH--HHHHHHHHHHHTT--TSCEEE
T ss_pred             HHHHHHHHHHHHHhHHhh-----------------------cCCEEEEEECCChhhH--HHHHHHHHHHHhc--CCeEEE
Confidence            23 778888888777663                       4556777899998765  4445555544432  468999


Q ss_pred             EEecCCcCHHHHhcccc
Q 023913          255 AQVGWVIGIIFTLSITH  271 (275)
Q Consensus       255 ~S~~~~~g~~~l~~~~~  271 (275)
                      +||++++|++++++.+.
T Consensus       304 iSA~~g~gi~eL~~~i~  320 (416)
T 1udx_A          304 VSALTGAGLPALKEALH  320 (416)
T ss_dssp             CCTTTCTTHHHHHHHHH
T ss_pred             EECCCccCHHHHHHHHH
Confidence            99999999999987543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.38  E-value=3.7e-14  Score=127.93  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=67.0

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHH-hccccCchhHHHHHhcCCCc
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEERIRAVETGGCPH  148 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~~~~~~~~~~  148 (275)
                      ++.+.++...+|++++|+||||||||||+++|+|++  .|+|..........-...++. ++++.++             
T Consensus       115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~~~~-------------  179 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAALVDD-------------  179 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEEEEE-------------
T ss_pred             hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhccCcc-------------
Confidence            444555566779999999999999999999999998  788754332211111111111 2222111             


Q ss_pred             cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeCCCCCCccc
Q 023913          149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR  209 (275)
Q Consensus       149 ~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~t~g~d~~~  209 (275)
                      .+  .   ...+.++.+ ....++  ... |+||+||   ||+++ +|+|+|   |+++|...
T Consensus       180 ~~--~---~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~  228 (305)
T 2v9p_A          180 AT--H---ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---TSNIDVQA  228 (305)
T ss_dssp             EC--H---HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE---EESSCSTT
T ss_pred             cc--H---HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---ECCCCHHH
Confidence            01  0   112233332 122233  233 9999999   99998 899998   77777644

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.36  E-value=5.1e-13  Score=120.48  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=53.0

Q ss_pred             CceEEEEeCCCCCCcccc-----ccccccccCEEEEecCCCC-ccchhhHHHHHHHHHhcC-CCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLA-SAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-----~~~~i~~adiivlNK~Dl~-~~~~~~~~~~~~~i~~~~-~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++.+......     .......+.++|+||+|+. +.  .......+.+.+.. +..+++++||+++.|+++
T Consensus        94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~--~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~  171 (308)
T 3iev_A           94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA--KNVLPLIDEIHKKHPELTEIVPISALKGANLDE  171 (308)
T ss_dssp             SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG--GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH--HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHH
Confidence            788999998876432211     1112356779999999998 44  33344444555544 678999999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      +++.+
T Consensus       172 L~~~l  176 (308)
T 3iev_A          172 LVKTI  176 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.30  E-value=9e-14  Score=130.56  Aligned_cols=164  Identities=13%  Similarity=-0.079  Sum_probs=74.1

Q ss_pred             EEEEcCCcchHHHHHHHHHhccCCC-C--cEEEEeccCCCCChHHHHHhccccCchhHHHHHh-----cCCCcc-chHHH
Q 023913           84 VGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-----GGCPHA-AIRED  154 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~-----~~~~~~-~~~~~  154 (275)
                      ++|+|+||||||||+++|+|...+. +  .+.+..  ..+.    ....+++++|.......+     .+.... .....
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~--~~t~----~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI--KKTV----QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CC----EEEEEECC------CEEEEEEECC-----------
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC--ccce----eeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            4999999999999999999987643 3  221111  0000    123466766653211001     111000 00000


Q ss_pred             HHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-Cce---EEEEe-CC-CCCCcccc-ccccc--cccCEEEEec
Q 023913          155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYI---IYIID-VS-GGDKIPRK-GGPGI--TQADLLVINK  225 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~---vlllD-~t-~g~d~~~~-~~~~i--~~adiivlNK  225 (275)
                      ...+.+.+..     .+      +.++++++.++|+++ ++.   ++++| |+ .+++.... ....+  ..+-++|+||
T Consensus       108 ~~~i~~~i~~-----~~------~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK  176 (418)
T 2qag_C          108 WQPVIDYIDS-----KF------EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAK  176 (418)
T ss_dssp             CHHHHHHHHH-----HH------HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEES
T ss_pred             HHHHHHHHHH-----HH------HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEc
Confidence            0011111111     00      334567788899887 777   77777 55 46664431 11111  3456889999


Q ss_pred             CCCCccchhhHH----HHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          226 TDLASAIGADLA----VMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       226 ~Dl~~~~~~~~~----~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +|+.+.  .++.    .+.+.+...  +.+++.+|++++.++++++.
T Consensus       177 ~Dll~~--~ev~~~k~~i~~~~~~~--~i~~~~~sa~~~~~v~~~~~  219 (418)
T 2qag_C          177 ADTLTP--EECQQFKKQIMKEIQEH--KIKIYEFPETDDEEENKLVK  219 (418)
T ss_dssp             TTSSCH--HHHHHHHHHHHHHHHHH--TCCCCCCC------------
T ss_pred             ccCccH--HHHHHHHHHHHHHHHHc--CCeEEeCCCCCCcCHHHHHH
Confidence            999875  3343    333444443  57788999999888876544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.30  E-value=3.9e-13  Score=122.61  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI  151 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~  151 (275)
                      +.++...+|++++|+||||||||||+++|+|+++|+ |.|.+.+.+.....  ..++.+++++                 
T Consensus       163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~~~~-----------------  223 (330)
T 2pt7_A          163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQLFF-----------------  223 (330)
T ss_dssp             HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEEEEC-----------------
T ss_pred             hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEEEEe-----------------
Confidence            444445679999999999999999999999999998 88888764311100  0001111110                 


Q ss_pred             HHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEeCCCC
Q 023913          152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSGG  204 (275)
Q Consensus       152 ~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD~t~g  204 (275)
                                                .+|++|+++++++|. +|+++|+|++.+
T Consensus       224 --------------------------ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          224 --------------------------GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             --------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             --------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence                                      179999999999999 999999996554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.28  E-value=1.1e-11  Score=126.24  Aligned_cols=51  Identities=24%  Similarity=0.324  Sum_probs=38.1

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C---ceEEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D---YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~---~~vlllD-~t~g~d~~~  209 (275)
                      .+.|+.+++.+ ..+..+.+ ||||+||+.|||+|+ +   |.|+||| ||+++|...
T Consensus       786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~  843 (916)
T 3pih_A          786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED  843 (916)
T ss_dssp             HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH
T ss_pred             HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH
Confidence            34556665543 23445555 999999999999998 3   5899999 999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.25  E-value=1.8e-11  Score=106.61  Aligned_cols=183  Identities=18%  Similarity=0.151  Sum_probs=102.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhc---cccCchhHHHHH----hcCCCccc--
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN---GALPEERIRAVE----TGGCPHAA--  150 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~i---g~v~q~~~~~~~----~~~~~~~~--  150 (275)
                      ..+++++|+.|+|||||++.|+..+. . .++.++..|++..... +....   .+. . ......    .+++.++.  
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP-YEPSIDVREFV-T-VEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS-SCCSEEGGGTC-C-HHHHHTTTCCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC-CCCCCChhhcc-c-HHHHhhccCCCCCcEEecHH
Confidence            56899999999999999999998777 6 5899999888632100 00000   000 0 000000    01111111  


Q ss_pred             hH-HHHHHHHHHHHHhhcccccccccccChhHHHHHHH-------HHHhcC-ceEEEEeCCCCCCccccc---------c
Q 023913          151 IR-EDISINLGPLEELSNLFKADLLLCESGGDNLAANF-------SRELAD-YIIYIIDVSGGDKIPRKG---------G  212 (275)
Q Consensus       151 ~~-~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~l-------aral~~-~~vlllD~t~g~d~~~~~---------~  212 (275)
                      .. .......+.++.+.  ..++.++++++|+.....+       ..++.+ ..|+++|++...+.....         .
T Consensus        90 ~~~~~~~~l~~~l~~~~--~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~  167 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRLE--KENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID  167 (262)
T ss_dssp             HHHTTHHHHHHHHHHHH--HHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHh--hcCCEEEEeCCCccchhhhhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence            00 01111222333332  3478999998887554332       123334 445567765443322110         1


Q ss_pred             ccccccCEEEEecCCCCccchhhHHHHHH----------H------------------HHhcCCCCCEEEEEecCCcCHH
Q 023913          213 PGITQADLLVINKTDLASAIGADLAVMER----------D------------------ALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       213 ~~i~~adiivlNK~Dl~~~~~~~~~~~~~----------~------------------i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      .+...+.++|+||+|+.+.  .+.+.+.+          .                  +.+.++..+++++|+++++|++
T Consensus       168 ~~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~  245 (262)
T 1yrb_A          168 LRLGATTIPALNKVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE  245 (262)
T ss_dssp             HHHTSCEEEEECCGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred             cccCCCeEEEEeccccccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence            2235678999999999865  22222221          1                  2445566789999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       246 ~l~~~i~  252 (262)
T 1yrb_A          246 DLETLAY  252 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.25  E-value=1.8e-12  Score=116.66  Aligned_cols=74  Identities=11%  Similarity=-0.017  Sum_probs=50.3

Q ss_pred             CceEEEEeCCCCCCccccc-ccc---c--cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG-GPG---I--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~~~---i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      +..++++|++.+....... ..+   .  ..+-++|+||+|+...  .. + +.+.++++.+..+++++||+++.|++++
T Consensus        88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~--~~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l  163 (301)
T 1wf3_A           88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY--PE-E-AMKAYHELLPEAEPRMLSALDERQVAEL  163 (301)
T ss_dssp             SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS--HH-H-HHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc--hH-H-HHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence            7789999987764322211 111   2  4567899999999865  22 0 2334444456678999999999999999


Q ss_pred             hccc
Q 023913          267 LSIT  270 (275)
Q Consensus       267 ~~~~  270 (275)
                      ++.+
T Consensus       164 ~~~l  167 (301)
T 1wf3_A          164 KADL  167 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.23  E-value=1.7e-12  Score=116.77  Aligned_cols=148  Identities=14%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      .++.+++|+|++|||||||++.|+|.     ++.+....+.+...    +..|++.++                      
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~-----~~~i~s~~~~tTr~----~~~gi~~~~----------------------   54 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRH----RIVGIHTEG----------------------   54 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC-----SEEECCCCSSCCSS----CEEEEEEET----------------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC-----CccccCCCCCccee----eEEEEEEEC----------------------
Confidence            34568999999999999999999997     34443333322211    122333221                      


Q ss_pred             HHHHHHhhcccccccccccChhHH-H-HHHHHH--------Hhc--CceEEEEeCCCCCCcccc-cccc---ccccCEEE
Q 023913          159 LGPLEELSNLFKADLLLCESGGDN-L-AANFSR--------ELA--DYIIYIIDVSGGDKIPRK-GGPG---ITQADLLV  222 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~~-q-~~~lar--------al~--~~~vlllD~t~g~d~~~~-~~~~---i~~adiiv  222 (275)
                                 .....+.+++|.. + +-.+.+        ++.  +..++++|++. ...... ....   ...+.+++
T Consensus        55 -----------~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilv  122 (301)
T 1ega_A           55 -----------AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILA  122 (301)
T ss_dssp             -----------TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEE
T ss_pred             -----------CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEE
Confidence                       1122333444432 1 111111        111  45677788765 322211 1111   24677999


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +||+|+.... ..+....+.+.+..+..+++++|++++.|++++++.+
T Consensus       123 lNK~D~~~~~-~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          123 VNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV  169 (301)
T ss_dssp             EESTTTCCCH-HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred             EECcccCccH-HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence            9999998621 3333333344444444579999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.23  E-value=7.3e-12  Score=113.45  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             cccccc-ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          172 DLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       172 d~~~~e-S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                      +..+.+ |+||+|+++||++|+     +|+++|+| |++++|...
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~  258 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN  258 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH
Confidence            344455 999999999999984     57899999 888988653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.21  E-value=1.9e-13  Score=113.39  Aligned_cols=107  Identities=15%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC----CcEEEEeccCCCCC---hHHHH-Hhcc----ccCchhHHHHHhcCCCcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA  149 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~----g~i~i~~~d~~~~~---~~~~~-~~ig----~v~q~~~~~~~~~~~~~~  149 (275)
                      ++++|+|++|||||||+++|+++++|+    |.|.+.+.++.+.+   ...++ +.+|    +++|+...+  +.  . .
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~--~-~   77 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR--R-V   77 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE--E-C
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee--c-C
Confidence            689999999999999999999999875    67777776654432   23444 4678    667654211  00  0 0


Q ss_pred             chHHHHHHHHHHHHHhhccccccccccc--ChhHHHHHHHHHHhc-CceE
Q 023913          150 AIREDISINLGPLEELSNLFKADLLLCE--SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e--S~G~~q~~~laral~-~~~v  196 (275)
                      . .+......+.+... .. .++..+.|  |+||+||+++||+++ +|.+
T Consensus        78 ~-~~~~a~l~~~i~~~-l~-g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           78 S-EEEGNDLDWIYERY-LS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             C-HHHHTCHHHHHHHH-TT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             C-hhhhhCHHHHHHhh-CC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence            0 01000111222220 12 68888888  999999999999998 5654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.21  E-value=4.9e-12  Score=106.09  Aligned_cols=77  Identities=12%  Similarity=-0.007  Sum_probs=50.9

Q ss_pred             CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---------------C
Q 023913          193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---------------D  248 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---------------~  248 (275)
                      +..++++|.+.......   ..      ......+-++|.||+|+...  ...+++.+.+....               .
T Consensus        94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 1f6b_A           94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNAR  171 (198)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccccccCc
Confidence            67888999876532111   00      01123456889999999764  34555666555321               3


Q ss_pred             CCCEEEEEecCCcCHHHHhcccc
Q 023913          249 GGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       249 ~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+++++||++|+|++++++.+.
T Consensus       172 ~~~~~~~SA~~g~gv~~l~~~l~  194 (198)
T 1f6b_A          172 PLEVFMCSVLKRQGYGEGFRWMA  194 (198)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHH
T ss_pred             eEEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.21  E-value=1.1e-11  Score=116.83  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHH
Q 023913          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~  264 (275)
                      ++..++++|++.+.......    ......+-++|+||+|+.+......+++.+.+.+.   ...++++++||++|.|++
T Consensus       264 ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  343 (439)
T 1mky_A          264 ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID  343 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHH
Confidence            36778888987664322111    11124566899999999865222244444444322   246899999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       344 ~l~~~i  349 (439)
T 1mky_A          344 RMIDAM  349 (439)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.18  E-value=1.5e-11  Score=104.15  Aligned_cols=79  Identities=8%  Similarity=-0.098  Sum_probs=52.5

Q ss_pred             CceEEEEeCCCCCCcccc-c---cccccccCEEEEecCCCCccch--hhHHHHHHHHHhc-----CCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIG--ADLAVMERDALRM-----RDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-~---~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~-----~~~~~ii~~S~~~~~  261 (275)
                      +..++++|++.+...... .   ......+-++|+||+|+.+...  ...+.+.+.+...     ....+++++|+++++
T Consensus       117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~  196 (223)
T 4dhe_A          117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT  196 (223)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence            447889998765432211 1   1113456789999999987521  1234444555554     467889999999999


Q ss_pred             CHHHHhcccc
Q 023913          262 GIIFTLSITH  271 (275)
Q Consensus       262 g~~~l~~~~~  271 (275)
                      |++++++.+.
T Consensus       197 gv~~l~~~l~  206 (223)
T 4dhe_A          197 GLDDAHALIE  206 (223)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999998653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.18  E-value=1.7e-11  Score=121.47  Aligned_cols=124  Identities=18%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      ..+++.++|+|++|||||||++.|++...+  . |+| ..+..+....+.++.+.+++.++...                
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~----------------   68 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAP----------------   68 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEE----------------
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceE----------------
Confidence            356899999999999999999999986553  3 766 33444444455555666666555320                


Q ss_pred             HHHHHHHHHHhhcccccccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCC
Q 023913          155 ISINLGPLEELSNLFKADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTD  227 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~D  227 (275)
                                + ........+.++.|+.. .....+++  ++..++++|++.+.+.+...    ......+-++++||+|
T Consensus        69 ----------~-~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD  137 (665)
T 2dy1_A           69 ----------L-LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD  137 (665)
T ss_dssp             ----------E-EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             ----------E-eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCc
Confidence                      0 00112333444556432 12222333  38999999999887754321    1122456789999999


Q ss_pred             CC
Q 023913          228 LA  229 (275)
Q Consensus       228 l~  229 (275)
                      +.
T Consensus       138 ~~  139 (665)
T 2dy1_A          138 KG  139 (665)
T ss_dssp             GC
T ss_pred             hh
Confidence            97

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.16  E-value=2.5e-12  Score=111.86  Aligned_cols=119  Identities=10%  Similarity=0.030  Sum_probs=60.1

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH-------H
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (275)
                      +..++.+.++...+|++++|+||||||||||+++|++++.   .+.+.          ...+.++|++|+..       +
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG---~~~~~----------~~~~~i~~v~~d~~~~~l~~~~   77 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG---QNEVE----------QRQRKVVILSQDRFYKVLTAEQ   77 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHHT---GGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc---hhccc----------ccCCceEEEeCCcCccccCHhH
Confidence            4455666666667799999999999999999999999762   22111          11234555555421       1


Q ss_pred             HHHh-cCCCccc--hHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeC
Q 023913          140 AVET-GGCPHAA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDV  201 (275)
Q Consensus       140 ~~~~-~~~~~~~--~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~  201 (275)
                      +... .+.....  ...+.....+.|+.+  ....+..+.+ |+|++||+.+ ++++ +|.++|+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg  141 (245)
T 2jeo_A           78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEG  141 (245)
T ss_dssp             HHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEEC
T ss_pred             hhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeC
Confidence            1111 1110000  000112223344433  2233444444 9999999876 4555 789999994

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.16  E-value=3.5e-11  Score=100.09  Aligned_cols=77  Identities=12%  Similarity=0.086  Sum_probs=50.3

Q ss_pred             CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC----------CCCCEE
Q 023913          193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMR----------DGGPFI  253 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~----------~~~~ii  253 (275)
                      +..++++|.+.......   ..      ...-..+-++|.||+|+...  ...+++.+.+....          ...+++
T Consensus        92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T 1m2o_B           92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVF  169 (190)
T ss_dssp             CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccceEEEE
Confidence            67788899876532111   00      01123456889999999764  34455655554322          346799


Q ss_pred             EEEecCCcCHHHHhcccc
Q 023913          254 FAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       254 ~~S~~~~~g~~~l~~~~~  271 (275)
                      ++|+++++|++++++.+.
T Consensus       170 ~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          170 MCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             ECBTTTTBSHHHHHHHHH
T ss_pred             EeECCcCCCHHHHHHHHH
Confidence            999999999999998653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.15  E-value=3.1e-11  Score=101.27  Aligned_cols=79  Identities=11%  Similarity=-0.004  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCccc-cc---cccccccCEEEEecCCCCccchh--hHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-~~---~~~i~~adiivlNK~Dl~~~~~~--~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      +..+++.|.+.+..... ..   ......+.+++.||+|+.+....  .++.+++.+.+......++++|++++.+++++
T Consensus       110 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l  189 (210)
T 1pui_A          110 QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL  189 (210)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred             cEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence            45567777655432211 01   11223455778999999875211  13444455555444567899999999999999


Q ss_pred             hcccc
Q 023913          267 LSITH  271 (275)
Q Consensus       267 ~~~~~  271 (275)
                      ++.+.
T Consensus       190 ~~~l~  194 (210)
T 1pui_A          190 RQKLD  194 (210)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.15  E-value=2.3e-11  Score=100.27  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++........    .......+-++|+||+|+.+.  .+.+...+.+++.   ....+++++|+++++|+++
T Consensus       106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  183 (195)
T 3pqc_A          106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE  183 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            457778887655332111    112235677899999999865  3333333333322   2347899999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++.+.
T Consensus       184 l~~~l~  189 (195)
T 3pqc_A          184 LLDLIS  189 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.13  E-value=4.4e-11  Score=113.32  Aligned_cols=79  Identities=16%  Similarity=0.128  Sum_probs=55.7

Q ss_pred             cCceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHH
Q 023913          192 ADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGII  264 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~  264 (275)
                      ++..|+++|++.+...+... .   .....+-+||+||+|+.+......+++.+.+++..   +.++++++||++|.|++
T Consensus       278 ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  357 (456)
T 4dcu_A          278 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH  357 (456)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred             CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHH
Confidence            37889999988765433221 1   11245678999999998654345566666666543   36899999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       358 ~l~~~i  363 (456)
T 4dcu_A          358 TLMPAI  363 (456)
T ss_dssp             GHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.12  E-value=4.5e-11  Score=109.73  Aligned_cols=155  Identities=21%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      .....++|+|++|+|||||++.|++...     .+......+...     .++.+.+..        .            
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~-----~~~~~~~~~--------~------------  214 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGI-----NVGQFEDGY--------F------------  214 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCE-----EEEEEEETT--------E------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeece-----eEEEEEecC--------c------------
Confidence            3467899999999999999999998632     111111111110     111111100        0            


Q ss_pred             HHHHHHhhccccccccccc-ChhHHHHHHHHHHh-cCceEEEEeCCCCC--Cccc--cc----cccc-cccCEEEEecCC
Q 023913          159 LGPLEELSNLFKADLLLCE-SGGDNLAANFSREL-ADYIIYIIDVSGGD--KIPR--KG----GPGI-TQADLLVINKTD  227 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral-~~~~vlllD~t~g~--d~~~--~~----~~~i-~~adiivlNK~D  227 (275)
                        .+..+......+....+ +.++++.+. +.+. ++..++++|++...  +...  ..    .... ..+-++|+||+|
T Consensus       215 --~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~D  291 (357)
T 2e87_A          215 --RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID  291 (357)
T ss_dssp             --EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTT
T ss_pred             --eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence              00000000111122222 667666554 3333 38899999965532  3221  11    1111 355688999999


Q ss_pred             CCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          228 LASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       228 l~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +...  ..++.+.+.+..  ...+++++||++|+|++++++.+
T Consensus       292 l~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~l~~~i  330 (357)
T 2e87_A          292 VADE--ENIKRLEKFVKE--KGLNPIKISALKGTGIDLVKEEI  330 (357)
T ss_dssp             TCCH--HHHHHHHHHHHH--TTCCCEECBTTTTBTHHHHHHHH
T ss_pred             cCCh--HHHHHHHHHHHh--cCCCeEEEeCCCCcCHHHHHHHH
Confidence            9876  344445555443  35689999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.12  E-value=4.9e-11  Score=114.94  Aligned_cols=107  Identities=15%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCc-EEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHH
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI  155 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~  155 (275)
                      -..+|++++|+|+||||||||++.+++...+.|. +.++..+   .....+..+.          ..++    ....   
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e---e~~~~l~~~~----------~~~g----~~~~---  336 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE---ESRAQLLRNA----------YSWG----MDFE---  336 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS---SCHHHHHHHH----------HTTS----CCHH---
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe---CCHHHHHHHH----------HHcC----CCHH---
Confidence            3467999999999999999999999999888754 4333221   1122222211          0011    0110   


Q ss_pred             HHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeCCCCCCcc
Q 023913          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIP  208 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~t~g~d~~  208 (275)
                           .+..++.....+..+.+ |+|++|++.+++++. +|.++|+||++++|..
T Consensus       337 -----~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~  386 (525)
T 1tf7_A          337 -----EMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG  386 (525)
T ss_dssp             -----HHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred             -----HHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh
Confidence                 11122222233344445 999999999999998 8999999999888764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.12  E-value=8.9e-11  Score=97.08  Aligned_cols=77  Identities=8%  Similarity=-0.034  Sum_probs=50.4

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHh-c--CCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~-~--~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++........    .......+-++|+||+|+.+.  ...+...+.+++ +  ....+++++|++++.|+++
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  184 (195)
T 1svi_A          107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE  184 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--HHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHH
Confidence            567888898765432221    111234567899999999876  333333333332 2  3467899999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++.+.
T Consensus       185 l~~~l~  190 (195)
T 1svi_A          185 AWGAIK  190 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.12  E-value=3e-11  Score=98.29  Aligned_cols=97  Identities=11%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccc----------cccccCEEEEecCCCCccch-hhH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGP----------GITQADLLVINKTDLASAIG-ADL  236 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~----------~i~~adiivlNK~Dl~~~~~-~~~  236 (275)
                      ..+.+++|+.....+.....   +..|+++|++.......  ....          ....+-++|+||+|+..... ...
T Consensus        60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~  139 (182)
T 1ky3_A           60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE  139 (182)
T ss_dssp             EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred             EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence            34555666544333333333   67888999775432111  0000          02345588999999964311 123


Q ss_pred             HHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          237 AVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       237 ~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +.+.+..+ .....+++++|+++++|++++++.+
T Consensus       140 ~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (182)
T 1ky3_A          140 KSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEI  172 (182)
T ss_dssp             HHHHHHHH-HTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCeEEEEecCCCCCHHHHHHHH
Confidence            34433333 2456789999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.11  E-value=6.6e-11  Score=109.17  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             ccccc-ChhHHHHHHHHHHhc-------CceEEEEe-CCCCCCccc
Q 023913          173 LLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       173 ~~~~e-S~G~~q~~~laral~-------~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.+ |+||+||++||++|+       +|+++|+| |++++|...
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~  320 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN  320 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH
Confidence            34455 999999999999987       89999999 899998654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.11  E-value=9.4e-11  Score=93.77  Aligned_cols=97  Identities=10%  Similarity=0.038  Sum_probs=57.1

Q ss_pred             ccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--c----ccc---cccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--K----GGP---GITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+.....+.+..   ++..++++|.+.......  .    ...   .-..+-++|+||+|+.+......+.+
T Consensus        53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  132 (168)
T 1u8z_A           53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA  132 (168)
T ss_dssp             EEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH
Confidence            34455566654333333332   278888999775321110  0    000   01345689999999976432344555


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..+..  +.+++++|++++.|++++++.+
T Consensus       133 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A          133 KNRADQW--NVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             HHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHc--CCeEEEeCCCCCCCHHHHHHHH
Confidence            5555554  3589999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.10  E-value=1.8e-11  Score=115.58  Aligned_cols=68  Identities=10%  Similarity=0.035  Sum_probs=51.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec---cCCCC-----ChHHHHHhccccCch
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----EDGEFLMRNGALPEE  136 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~---d~~~~-----~~~~~~~~ig~v~q~  136 (275)
                      .+++.+. +...+|++++|+|+||||||||+++|+|+++|+ |.+.+.+.   ++...     ....+.+.++|++|.
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~  221 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA  221 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence            4445455 666789999999999999999999999999999 98888876   33211     013355668999985

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.09  E-value=1.2e-10  Score=93.51  Aligned_cols=76  Identities=14%  Similarity=0.047  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCcc---cccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP---RKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+......   ....      ..-..+-++|+||+|+.+......+...+.....  +.+++++|+++++|+
T Consensus        74 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  151 (166)
T 3q72_A           74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF--DCKFIETSAALHHNV  151 (166)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHT--TCEEEECBGGGTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHh--CCcEEEeccCCCCCH
Confidence            6788888876432111   0000      0113456889999999865323334444444443  478999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       152 ~~l~~~l  158 (166)
T 3q72_A          152 QALFEGV  158 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.09  E-value=7e-11  Score=111.30  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             cCceEEEEeCCCCCCccccc-c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHH
Q 023913          192 ADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~~-~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~  264 (275)
                      ++..++++|++.+...+... .   .....+-++|+||+|+.+......+++.+.+.+.   ...++++++||++|.|++
T Consensus       258 ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~  337 (436)
T 2hjg_A          258 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH  337 (436)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred             CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence            37889999988765433211 0   1124566889999999875322334444444332   247899999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       338 ~l~~~i  343 (436)
T 2hjg_A          338 TLMPAI  343 (436)
T ss_dssp             GHHHHH
T ss_pred             HHHHHH
Confidence            988643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.09  E-value=2.5e-10  Score=96.30  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--c----cccc---ccccCEEEEecCCCCccchhhHHH
Q 023913          171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--K----GGPG---ITQADLLVINKTDLASAIGADLAV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~----~~~~---i~~adiivlNK~Dl~~~~~~~~~~  238 (275)
                      ....+.+++|+.....+....+   +..|+++|.+.......  .    ....   -..+-+||+||+|+........+.
T Consensus        84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~  163 (217)
T 2f7s_A           84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ  163 (217)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence            3445566677654444444433   67888999875422111  0    1000   134458899999997642223344


Q ss_pred             HHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          239 MERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       239 ~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +++..+..  +.+++++|+++++|++++++.+
T Consensus       164 ~~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l  193 (217)
T 2f7s_A          164 ARELADKY--GIPYFETSAATGQNVEKAVETL  193 (217)
T ss_dssp             HHHHHHHT--TCCEEEEBTTTTBTHHHHHHHH
T ss_pred             HHHHHHHC--CCcEEEEECCCCCCHHHHHHHH
Confidence            44444444  4689999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.08  E-value=1e-10  Score=107.50  Aligned_cols=109  Identities=16%  Similarity=-0.002  Sum_probs=63.1

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEE-eccCCCCChHHHHHhccccCchhH-----HHHHhcCCCcc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVETGGCPHA  149 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~-~~d~~~~~~~~~~~~ig~v~q~~~-----~~~~~~~~~~~  149 (275)
                      ..+|++++|+|+||||||||+|+|+|.+. +. |.|.+. +....+    ...+.+++++|+..     -...++ ....
T Consensus       212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~-l~~l  286 (358)
T 2rcn_A          212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFG-LWHL  286 (358)
T ss_dssp             HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCC-CCCC
T ss_pred             hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhh-hcCC
Confidence            34689999999999999999999999998 87 998876 432211    12345788887642     111111 1111


Q ss_pred             chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc
Q 023913          150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA  192 (275)
Q Consensus       150 ~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~  192 (275)
                      ...+....+.+.++.+......+....+ | |++|++++|++++
T Consensus       287 ~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          287 EPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             CHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             CHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            1111122233455555554445555555 8 9999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.08  E-value=3.4e-11  Score=97.92  Aligned_cols=75  Identities=15%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCC-------CCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD-------GGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~-------~~~ii~~S~~~~~  261 (275)
                      +..++++|.+........    .......+-++|+||+|+...   ..+.+.+.+.+...       ..+++++|++++.
T Consensus        80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            567888897654321110    011124566899999999864   22334334433221       2479999999999


Q ss_pred             CHHHHhccc
Q 023913          262 GIIFTLSIT  270 (275)
Q Consensus       262 g~~~l~~~~  270 (275)
                      |++++++.+
T Consensus       157 gv~~l~~~l  165 (178)
T 2lkc_A          157 GLDHLLEMI  165 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.08  E-value=7e-11  Score=95.61  Aligned_cols=95  Identities=11%  Similarity=0.000  Sum_probs=52.4

Q ss_pred             ccccChhHHH--HHHHHHHhc---CceEEEEeCCCCCCcc--ccccc-------cccccCEEEEecCCCCccchhhHHHH
Q 023913          174 LLCESGGDNL--AANFSRELA---DYIIYIIDVSGGDKIP--RKGGP-------GITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       174 ~~~eS~G~~q--~~~laral~---~~~vlllD~t~g~d~~--~~~~~-------~i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      .+.+++|+..  .-.+.+...   +..++++|.+......  .....       .-..+-++|+||+|+.+......+..
T Consensus        55 ~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~  134 (175)
T 2nzj_A           55 VVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG  134 (175)
T ss_dssp             EEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHH
Confidence            3445555443  223333332   6788888976532110  00000       11345688999999976422233344


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +......  +.+++++|+++++|++++++.+
T Consensus       135 ~~~~~~~--~~~~~~~Sa~~g~gi~~l~~~l  163 (175)
T 2nzj_A          135 RACAVVF--DCKFIETSATLQHNVAELFEGV  163 (175)
T ss_dssp             HHHHHHH--TSEEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHc--CCeEEEEecCCCCCHHHHHHHH
Confidence            3333333  3689999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.07  E-value=1.8e-10  Score=95.89  Aligned_cols=76  Identities=11%  Similarity=0.017  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCCCccc--c----c---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--K----G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~----~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......  .    .   ......+-+||+||+|+.+......+.+.+..+..+  .+++++|++++.|+
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN--VNYVETSAKTRANV  164 (206)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--CEEEEECTTTCTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC--CeEEEEeCCCCCCH
Confidence            77888889775321110  0    0   001134558999999997653334455555555543  58999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       165 ~~l~~~l  171 (206)
T 2bov_A          165 DKVFFDL  171 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.07  E-value=4.3e-11  Score=114.32  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             cCceEEEEeCCCCCCcccc-ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          192 ADYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~-~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      ++..|+++|++........ ....+ ..+-++|+||+|+.+.  ...+.+.+.+   ....+++++|+++++|++++++.
T Consensus       324 aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~~~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~  398 (482)
T 1xzp_A          324 ADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INEEEIKNKL---GTDRHMVKISALKGEGLEKLEES  398 (482)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCHHHHHHHH---TCSTTEEEEEGGGTCCHHHHHHH
T ss_pred             ccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--cCHHHHHHHh---cCCCcEEEEECCCCCCHHHHHHH
Confidence            3788999998766432211 11111 3456899999999764  2334443332   23468999999999999999875


Q ss_pred             c
Q 023913          270 T  270 (275)
Q Consensus       270 ~  270 (275)
                      +
T Consensus       399 l  399 (482)
T 1xzp_A          399 I  399 (482)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.07  E-value=1.1e-10  Score=93.68  Aligned_cols=77  Identities=12%  Similarity=-0.063  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCCCc---ccc---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI---PRK---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.....   ...   ...   .-..+-++|+||+|+.+......+.+.+..+.+ +..+++++|++++.|+
T Consensus        76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  154 (167)
T 1c1y_A           76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-CNCAFLESSAKSKINV  154 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TSCEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc-cCCcEEEecCCCCCCH
Confidence            778888887653211   110   000   113455889999999765322344454444443 4678999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       155 ~~l~~~l  161 (167)
T 1c1y_A          155 NEIFYDL  161 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.06  E-value=1.3e-10  Score=93.44  Aligned_cols=77  Identities=12%  Similarity=-0.040  Sum_probs=47.6

Q ss_pred             CceEEEEeCCCCCCc---cccc--ccc-----ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913          193 DYIIYIIDVSGGDKI---PRKG--GPG-----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~--~~~-----i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g  262 (275)
                      +..++++|.+.....   ....  ...     -..+-++|+||+|+.+......+......+..  +.+++++|++++.|
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~g  153 (172)
T 2erx_A           76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--KCAFMETSAKLNHN  153 (172)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBS
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHh--CCeEEEecCCCCcC
Confidence            788999997753211   1100  000     12455889999999764222223333333333  46899999999999


Q ss_pred             HHHHhcccc
Q 023913          263 IIFTLSITH  271 (275)
Q Consensus       263 ~~~l~~~~~  271 (275)
                      ++++++.+.
T Consensus       154 i~~l~~~l~  162 (172)
T 2erx_A          154 VKELFQELL  162 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.06  E-value=7.6e-11  Score=112.42  Aligned_cols=145  Identities=23%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
                      ++-.++|+|++|+|||||+|.|++.-     ..+.....++..+                                    
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~-----~a~vs~~~gtT~d------------------------------------  270 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQE-----RAIVSHMPGTTRD------------------------------------  270 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC---------------------------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-----CcccCCCCCceEE------------------------------------
Confidence            36679999999999999999998852     1222211111110                                    


Q ss_pred             HHHHHhhcccccccccccChhHHHHHH------HHHHh--c---CceEEEEeCCCCCCccc-----cccccc-cccCEEE
Q 023913          160 GPLEELSNLFKADLLLCESGGDNLAAN------FSREL--A---DYIIYIIDVSGGDKIPR-----KGGPGI-TQADLLV  222 (275)
Q Consensus       160 ~~L~~l~~~~~~d~~~~eS~G~~q~~~------laral--~---~~~vlllD~t~g~d~~~-----~~~~~i-~~adiiv  222 (275)
                       ..............+.++.|+.+.-.      +.+++  +   +..++++|++.......     .....+ ..+.++|
T Consensus       271 -~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV  349 (476)
T 3gee_A          271 -YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTV  349 (476)
T ss_dssp             ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEE
T ss_pred             -EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEE
Confidence             00000011123345555666543211      12222  1   67889999887654310     010111 4567899


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +||+|+.+..  ..+.  +.+.+. +..+++++|+++++|++++++.+.
T Consensus       350 ~NK~Dl~~~~--~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~  393 (476)
T 3gee_A          350 ANKLDRAANA--DALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMG  393 (476)
T ss_dssp             EECTTSCTTT--HHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHT
T ss_pred             EECcCCCCcc--chhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHH
Confidence            9999998763  2221  223332 126799999999999999988653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.06  E-value=1.5e-10  Score=94.57  Aligned_cols=76  Identities=11%  Similarity=0.001  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCCCccc--c----ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--K----GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~----~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......  .    ...   ....+-++|+||+|+.+......+.+.+.++..  +.+++++|+++++|+
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  168 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW--NVNYVETSAKTRANV  168 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc--CCeEEEeCCCCCCCH
Confidence            78888999765321110  0    000   013455889999999764323445555555554  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       169 ~~l~~~l  175 (187)
T 2a9k_A          169 DKVFFDL  175 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.06  E-value=1.4e-10  Score=92.66  Aligned_cols=76  Identities=16%  Similarity=-0.018  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCc---ccc---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI---PRK---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.....   ...   ...   .-..+-++|+||+|+.+......+...+..+..  +.+++++|++++.|+
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  153 (167)
T 1kao_A           76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW--GCPFMETSAKSKTMV  153 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSCEEEECTTCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHh--CCCEEEecCCCCcCH
Confidence            778888897753211   000   000   113455889999999754222333444444443  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       154 ~~l~~~l  160 (167)
T 1kao_A          154 DELFAEI  160 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.05  E-value=1.8e-10  Score=108.51  Aligned_cols=168  Identities=20%  Similarity=0.248  Sum_probs=98.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch---HHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI---REDI  155 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~---~~~~  155 (275)
                      ++.+++++|++||||||++..|+..+.+. +++.++..|.......+..+.          .....+.+....   ....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~----------~~~~~gv~~~~~~~~~dp~  165 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQ----------LGNQIGVQVYGEPNNQNPI  165 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHH----------HHHTTTCCEECCTTCSCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHH----------HHHhcCCceeeccccCCHH
Confidence            57899999999999999999999998877 889999888653211111110          001111111110   0011


Q ss_pred             HHHHHHHHHhhcccccccccccChhH----------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc---ccCEE
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGD----------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT---QADLL  221 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~----------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~---~adii  221 (275)
                      .....++..+ ....+|.+++++.|.          .+...+.+++. +..++++|++.+.+..... ..|.   ....|
T Consensus       166 ~i~~~al~~a-~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a-~~f~~~~~~~gV  243 (433)
T 3kl4_A          166 EIAKKGVDIF-VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA-SRFHQASPIGSV  243 (433)
T ss_dssp             HHHHHHHHHT-TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH-HHHHHHCSSEEE
T ss_pred             HHHHHHHHHH-HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH-HHHhcccCCcEE
Confidence            1122344443 234678888885552          23444555555 6788999998876543211 1122   34678


Q ss_pred             EEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          222 VINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       222 vlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      |+||+|.....+..+...    ...  +.||.+++.  |+++++|-
T Consensus       244 IlTKlD~~a~~G~als~~----~~~--g~Pi~fig~--Ge~v~dL~  281 (433)
T 3kl4_A          244 IITKMDGTAKGGGALSAV----VAT--GATIKFIGT--GEKIDELE  281 (433)
T ss_dssp             EEECGGGCSCHHHHHHHH----HHH--TCEEEEEEC--CSSSSCEE
T ss_pred             EEecccccccchHHHHHH----HHH--CCCEEEEEC--CCChHhCc
Confidence            999999876533333222    222  678988885  88876543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.05  E-value=8.5e-11  Score=97.39  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      --.++|+|+.|+|||||++.+++...........+.++..       ..+ .                            
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------~~~-~----------------------------   66 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV-------KTV-Y----------------------------   66 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE-------EEE-E----------------------------
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE-------EEE-E----------------------------
Confidence            4579999999999999999999853221111111111000       000 0                            


Q ss_pred             HHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCcc--ccccccc------cccCEEEEecCCCC
Q 023913          161 PLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIP--RKGGPGI------TQADLLVINKTDLA  229 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~--~~~~~~i------~~adiivlNK~Dl~  229 (275)
                           .........+.+++|+.....+....+   +..++++|.+......  ......+      ..+-++|+||+|+.
T Consensus        67 -----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A           67 -----RHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME  141 (191)
T ss_dssp             -----ETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             -----ECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence                 001122344555666554334443333   6788899977532111  0111111      23457889999997


Q ss_pred             ccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          230 SAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       230 ~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .......+..+...+..  +.+++++|+++++|++++++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          142 EERVVPTEKGQLLAEQL--GFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             GGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHc--CCeEEEEECCCCCCHHHHHHHH
Confidence            54323334444444444  4689999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.05  E-value=9.1e-11  Score=97.40  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......  .....+      ..+-++|+||+|+.+......+.+++..++.  +.+++++|++++.|++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESI--GAIVVETSAKNAINIE  174 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTT--TCEEEECBTTTTBSHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeCCCCcCHH
Confidence            67888899765432111  111111      3455789999999753223345555555554  4789999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       175 ~l~~~l~  181 (192)
T 2fg5_A          175 ELFQGIS  181 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.04  E-value=2e-10  Score=98.14  Aligned_cols=79  Identities=15%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCccc----cccccc-----cccCEEEEecCCCCccchh--h-HHHHHHHHHhcCCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR----KGGPGI-----TQADLLVINKTDLASAIGA--D-LAVMERDALRMRDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~----~~~~~i-----~~adiivlNK~Dl~~~~~~--~-~~~~~~~i~~~~~~~~ii~~S~~~~  260 (275)
                      +..|+++|++.......    .....+     ..+-++|+||+|+.+....  . .+.+.+.....++..+++++|++++
T Consensus       110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  189 (228)
T 2qu8_A          110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTG  189 (228)
T ss_dssp             EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTC
T ss_pred             cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccC
Confidence            57788899876432210    011111     3456889999999764211  1 1233333444434478999999999


Q ss_pred             cCHHHHhcccc
Q 023913          261 IGIIFTLSITH  271 (275)
Q Consensus       261 ~g~~~l~~~~~  271 (275)
                      +|++++++.+.
T Consensus       190 ~gi~~l~~~l~  200 (228)
T 2qu8_A          190 VGVEQAKITAC  200 (228)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999987543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.04  E-value=2.5e-11  Score=97.79  Aligned_cols=76  Identities=17%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......  .....      -..+-++|+||+|+.+......+.+++..+..  +.+++++|++++.|++
T Consensus        80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           80 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV--GAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHH
Confidence            56788889765431110  11011      12345889999999764323344555555544  4789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       158 ~l~~~l  163 (170)
T 1z08_A          158 ELFLDL  163 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.03  E-value=1.3e-10  Score=96.19  Aligned_cols=77  Identities=19%  Similarity=0.022  Sum_probs=48.4

Q ss_pred             CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~  260 (275)
                      +..|+++|.+.......   ..   ..   ....+-++|+||+|+...  ...+++.+.+...   ....+++++|++++
T Consensus        92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  169 (188)
T 1zd9_A           92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEK  169 (188)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence            67889999875432111   00   01   123455889999999865  2334444433221   23457899999999


Q ss_pred             cCHHHHhcccc
Q 023913          261 IGIIFTLSITH  271 (275)
Q Consensus       261 ~g~~~l~~~~~  271 (275)
                      .|++++++.+.
T Consensus       170 ~gv~~l~~~l~  180 (188)
T 1zd9_A          170 DNIDITLQWLI  180 (188)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999988653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.03  E-value=7.8e-12  Score=105.20  Aligned_cols=52  Identities=23%  Similarity=0.086  Sum_probs=42.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (275)
                      |++++|+|+||||||||+++|+|+++ + | +.+.+.+..+..  .+++.+||++|+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~   53 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVT   53 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEe
Confidence            67899999999999999999999998 6 8 888776664322  245678998886

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.03  E-value=1.3e-10  Score=102.37  Aligned_cols=41  Identities=17%  Similarity=0.515  Sum_probs=36.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC--CCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~g~i~i~~~d~  118 (275)
                      ..+|++++|+||||||||||+++|+|+++|  .|+|.+.+.++
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i   64 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI   64 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence            678999999999999999999999999986  38998888664

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=95.63  Aligned_cols=76  Identities=22%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-++|+||+|+.+......+...+.....  +.+++++|++++.|++
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--GIPFLETSAKNATNVE  167 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCCEEEECTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCcEEEEeCCCCCCHH
Confidence            67888899775321111  010111      3456889999999865333334444444444  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       168 ~l~~~l  173 (196)
T 3tkl_A          168 QSFMTM  173 (196)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.03  E-value=3e-10  Score=92.94  Aligned_cols=76  Identities=17%  Similarity=0.072  Sum_probs=49.7

Q ss_pred             CceEEEEeCCCCCCc---ccccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEec-CCcC
Q 023913          193 DYIIYIIDVSGGDKI---PRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVG-WVIG  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~-~~~g  262 (275)
                      +..++++|.+.....   .....      .....+-++|+||+|+........+.+++..+..+  .+++++|++ +++|
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIETSAKDPPLN  168 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEEEBCSSSCBS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--CeEEEeccCCCCCC
Confidence            778888997754211   10000      01134558899999997643334455555555554  789999999 9999


Q ss_pred             HHHHhccc
Q 023913          263 IIFTLSIT  270 (275)
Q Consensus       263 ~~~l~~~~  270 (275)
                      ++++++.+
T Consensus       169 v~~l~~~l  176 (183)
T 3kkq_A          169 VDKTFHDL  176 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.03  E-value=1.6e-10  Score=95.28  Aligned_cols=52  Identities=19%  Similarity=0.088  Sum_probs=38.9

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+-++|+||+|+...  ...+++++.++..+ ..+++++|+++++|++++++.+
T Consensus       135 ~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l  186 (198)
T 3t1o_A          135 DVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG-KFPVLEAVATEGKGVFETLKEV  186 (198)
T ss_dssp             SSCEEEEEECTTSTTC--CCHHHHHHHHCTTC-CSCEEECBGGGTBTHHHHHHHH
T ss_pred             CCCEEEEEEchhcccc--cCHHHHHHHHHhcC-CceEEEEecCCCcCHHHHHHHH
Confidence            3456888999999876  45556665555432 2389999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.02  E-value=1.1e-10  Score=96.77  Aligned_cols=77  Identities=18%  Similarity=0.021  Sum_probs=49.2

Q ss_pred             CceEEEEeCCCCCCccc---ccc---cc--c--------cccCEEEEecCCCCccchhhHHHHHHHHH--h--cCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGG---PG--I--------TQADLLVINKTDLASAIGADLAVMERDAL--R--MRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~---~~--i--------~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~--~~~~~~i  252 (275)
                      +..|+++|.+.......   ...   ..  +        ..+-+||+||+|+...  ...+++.+.+.  .  -....++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHHhcchhhccCCeeEE
Confidence            67888999876532111   000   00  1        4566889999999876  33344433332  1  1245689


Q ss_pred             EEEEecCCcCHHHHhcccc
Q 023913          253 IFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~~  271 (275)
                      +++|+++++|++++++.+.
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~  184 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQ  184 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHH
T ss_pred             EEeeCCCccCHHHHHHHHH
Confidence            9999999999999988653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.02  E-value=2.2e-10  Score=94.51  Aligned_cols=97  Identities=16%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc----cccCEEEEecCCCCccchhhHHHHHH
Q 023913          171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI----TQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i----~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      ....+.+++|+.....+.+..+   +..++++|++.......  .....+    ..+-++|+||+| ........+.+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~~~~~~~~~~  171 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKFQVDILEVQK  171 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-CCSCHHHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccccCCHHHHHH
Confidence            3455666777654333333333   78899999876532111  111111    245588999999 3322234556666


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+++.  +.+++++|++++.|++++++.+
T Consensus       172 ~~~~~--~~~~~~~Sa~~~~~i~~l~~~l  198 (208)
T 3clv_A          172 YAQDN--NLLFIQTSAKTGTNIKNIFYML  198 (208)
T ss_dssp             HHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred             HHHHc--CCcEEEEecCCCCCHHHHHHHH
Confidence            66654  4689999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.02  E-value=2.3e-10  Score=92.72  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      ..+.+++|+.....+.+...   +..++++|++.......  .....      -..+-++|+||+|+.+......+.+++
T Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  145 (179)
T 1z0f_A           66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ  145 (179)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH
Confidence            34455666543323333332   67888999876522111  10000      123458899999997543233455555


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+..  +.+++++|++++.|++++++.+
T Consensus       146 ~~~~~--~~~~~~~Sa~~~~gi~~l~~~l  172 (179)
T 1z0f_A          146 FAEEN--GLLFLEASAKTGENVEDAFLEA  172 (179)
T ss_dssp             HHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence            55554  4689999999999999998754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.02  E-value=2.4e-11  Score=99.59  Aligned_cols=70  Identities=16%  Similarity=0.167  Sum_probs=43.7

Q ss_pred             CceEEEEeCCCCCCcccc-ccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK-GGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|.+........ ....+      ..+-++|+||+|+.... ..       ..+. ...+++++||++++|+++
T Consensus        85 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~-------~~~~-~~~~~~~~SA~~g~gv~~  155 (172)
T 2gj8_A           85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET-LG-------MSEV-NGHALIRLSARTGEGVDV  155 (172)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-CE-------EEEE-TTEEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch-hh-------hhhc-cCCceEEEeCCCCCCHHH
Confidence            678889997655422111 11111      24558899999985431 00       0011 346799999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++.+.
T Consensus       156 l~~~l~  161 (172)
T 2gj8_A          156 LRNHLK  161 (172)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.01  E-value=2.9e-11  Score=97.08  Aligned_cols=76  Identities=14%  Similarity=0.055  Sum_probs=48.9

Q ss_pred             CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++.......  .....+     ..+-++|+||+|+.+......+.+++..+..  +.+++++|++++.|+++
T Consensus        79 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~  156 (168)
T 1z2a_A           79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL--KLRFYRTSVKEDLNVSE  156 (168)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECBTTTTBSSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHc--CCeEEEEecCCCCCHHH
Confidence            67888999875431111  111111     3456889999999764222334444444444  36899999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      +++.+
T Consensus       157 l~~~l  161 (168)
T 1z2a_A          157 VFKYL  161 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.01  E-value=6.7e-10  Score=91.50  Aligned_cols=146  Identities=17%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~  156 (275)
                      |..+.-.++|+|+.|+|||||++.+++-..     .  .... +         +++....                    
T Consensus        12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----~--~~~~-t---------~~~~~~~--------------------   54 (187)
T 1zj6_A           12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEV-----V--HTSP-T---------IGSNVEE--------------------   54 (187)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTTSC-----E--EEEC-C---------SCSSCEE--------------------
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhcCCC-----C--cCcC-C---------CccceEE--------------------
Confidence            345577899999999999999999996421     1  0011 0         0100000                    


Q ss_pred             HHHHHHHHhhcccccccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc---cc---cc---cccccCEEEEe
Q 023913          157 INLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVIN  224 (275)
Q Consensus       157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlN  224 (275)
                              + ........+.+++|+.....+.+..   ++..++++|.+.......   ..   ..   .-..+-++|+|
T Consensus        55 --------~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  125 (187)
T 1zj6_A           55 --------I-VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN  125 (187)
T ss_dssp             --------E-EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             --------E-EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence                    0 0011233444455543222222222   267889999876532211   00   01   12345588999


Q ss_pred             cCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913          225 KTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       225 K~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      |+|+...  ...+++.+.+...   ..+.+++++|+++++|++++++.+
T Consensus       126 K~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (187)
T 1zj6_A          126 KQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  172 (187)
T ss_dssp             CTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence            9999865  3344555554331   234589999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.01  E-value=1.6e-10  Score=109.79  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCcccc-ccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          193 DYIIYIIDVSGGDKIPRK-GGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..++++|++........ ....+ ..+.++|+||+|+.+..  ..+    .+.++....+++++|+++++|++++++.+
T Consensus       305 D~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~--~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i  378 (462)
T 3geh_A          305 DLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQ--LIT----SLEYPENITQIVHTAAAQKQGIDSLETAI  378 (462)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGG--GST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred             CEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcch--hhH----HHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence            678889998765432211 11111 24678899999998762  221    22333356789999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.00  E-value=3.1e-10  Score=93.17  Aligned_cols=144  Identities=16%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      .+.-.++|+|+.|+|||||++.+++-....-       .+ +         +++....                      
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-------~~-t---------~~~~~~~----------------------   56 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTI-------SP-T---------LGFNIKT----------------------   56 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSC-------CC-C---------SSEEEEE----------------------
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcc-------cc-c---------CccceEE----------------------
Confidence            4567899999999999999999997421000       00 0         0000000                      


Q ss_pred             HHHHHHhhcccccccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc---c---cccccCEEEEecC
Q 023913          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG---P---GITQADLLVINKT  226 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~---~---~i~~adiivlNK~  226 (275)
                            + ........+.+++|+.+...+.+...   +..++++|.+.......   ...   .   .-..+-++|+||+
T Consensus        57 ------~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~  129 (186)
T 1ksh_A           57 ------L-EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ  129 (186)
T ss_dssp             ------E-EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred             ------E-EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCc
Confidence                  0 00112233444555433222222222   67788899776432111   000   0   1234568999999


Q ss_pred             CCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCCcCHHHHhccc
Q 023913          227 DLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       227 Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      |+.+.  ...+++.+.+..  . ....+++++|+++++|++++++.+
T Consensus       130 Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  174 (186)
T 1ksh_A          130 DLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL  174 (186)
T ss_dssp             TSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             cCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHH
Confidence            99876  344455444431  1 235689999999999999998754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.00  E-value=1.9e-10  Score=92.46  Aligned_cols=76  Identities=13%  Similarity=0.006  Sum_probs=46.2

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......  .....+      ..+-++|.||+|+.+......+......+..  +.+++++|++++.|++
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~  157 (170)
T 1z0j_A           80 AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSI--HAIFVETSAKNAININ  157 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHc--CCEEEEEeCCCCcCHH
Confidence            67788888765422111  110111      2234567899999764222233444444443  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       158 ~l~~~i  163 (170)
T 1z0j_A          158 ELFIEI  163 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.00  E-value=2.8e-10  Score=93.76  Aligned_cols=77  Identities=17%  Similarity=0.072  Sum_probs=48.2

Q ss_pred             CceEEEEeCCCCCCccc---c---ccc---cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~---~~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|.+.......   .   ...   .-..+-++|.||+|+...  ...+.+.+.+..  . ....+++++||++|
T Consensus        85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  162 (181)
T 1fzq_A           85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (181)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHHhCchhccCCceEEEEccCCCC
Confidence            67888999775422111   0   001   123456889999999865  233444444321  1 12457999999999


Q ss_pred             cCHHHHhcccc
Q 023913          261 IGIIFTLSITH  271 (275)
Q Consensus       261 ~g~~~l~~~~~  271 (275)
                      +|++++++.+.
T Consensus       163 ~gi~~l~~~l~  173 (181)
T 1fzq_A          163 EGVQDGMNWVC  173 (181)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999998653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.00  E-value=3e-10  Score=92.44  Aligned_cols=95  Identities=15%  Similarity=0.108  Sum_probs=53.1

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+.....+.....   +..++++|++.......  .....      -..+-++|+||+|+.+......+.+++.
T Consensus        63 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  142 (180)
T 2g6b_A           63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  142 (180)
T ss_dssp             EEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence            3445555443333333322   67888999876422111  00001      1344588999999986432233444444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..  +.+++++|++++.|++++++.+
T Consensus       143 ~~~~--~~~~~~~Sa~~~~gi~~l~~~l  168 (180)
T 2g6b_A          143 AKEY--GLPFMETSAKTGLNVDLAFTAI  168 (180)
T ss_dssp             HHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            4443  4689999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.00  E-value=3e-11  Score=98.75  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      +..++.+.++...+|++++|+||||||||||+++|+|++ |+ |.|.+.+.++
T Consensus        19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            333444555566789999999999999999999999999 77 9998776655

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.99  E-value=5e-11  Score=96.71  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|++.........  ......+-++|.||+|+.....  .+.+.+.   +.+  +.+++++||++++|++++++
T Consensus        83 ~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~SA~~~~~v~~l~~  157 (165)
T 2wji_A           83 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KIL--GVKVVPLSAAKKMGIEELKK  157 (165)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHH--TSCEEECBGGGTBSHHHHHH
T ss_pred             CEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH---HHh--CCCEEEEEcCCCCCHHHHHH
Confidence            5677888987632211100  0112456688999999864311  1223332   222  36899999999999999987


Q ss_pred             ccc
Q 023913          269 ITH  271 (275)
Q Consensus       269 ~~~  271 (275)
                      .+.
T Consensus       158 ~l~  160 (165)
T 2wji_A          158 AIS  160 (165)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.99  E-value=6e-10  Score=89.22  Aligned_cols=97  Identities=14%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCccchhhHHHHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ..+.+++|+..--.+.+...   +..++++|.+.......   ...      ..-..+-++|+||+|+...  ...+.+.
T Consensus        46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~  123 (164)
T 1r8s_A           46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEIT  123 (164)
T ss_dssp             EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred             EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHH
Confidence            34445555533223333322   67888999876522111   010      0113456889999999765  3334444


Q ss_pred             HHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRM---RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+...   ....+++++|++++.|++++++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (164)
T 1r8s_A          124 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS  157 (164)
T ss_dssp             HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence            433221   1245699999999999999987653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.99  E-value=9.6e-11  Score=95.11  Aligned_cols=96  Identities=7%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc----------ccccCEEEEecCCCCccchhhHH
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG----------ITQADLLVINKTDLASAIGADLA  237 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~----------i~~adiivlNK~Dl~~~~~~~~~  237 (275)
                      ..+.+++|+.....+.....   +..++++|.+.......  .....          ...+-++|+||+|+.... ...+
T Consensus        58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~  136 (177)
T 1wms_A           58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTE  136 (177)
T ss_dssp             EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHH
T ss_pred             EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHH
Confidence            34445555443333333333   67788888765432110  00000          223558899999997431 2344


Q ss_pred             HHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          238 VMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       238 ~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+.+..+. ....+++++|++++.|++++++.+
T Consensus       137 ~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l  168 (177)
T 1wms_A          137 EAQAWCRD-NGDYPYFETSAKDATNVAAAFEEA  168 (177)
T ss_dssp             HHHHHHHH-TTCCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHH
Confidence            45444443 346789999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.99  E-value=2.1e-10  Score=95.23  Aligned_cols=77  Identities=21%  Similarity=0.052  Sum_probs=49.5

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-+||+||+|+.+......+.+++..+.+ ...+++++|+++++|++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQI-TGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS-TTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhc-CCCeEEEEeCCCCCCHH
Confidence            78899999876432211  000111      2445889999999764222334444444443 46789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       179 ~l~~~l  184 (192)
T 2il1_A          179 EIFLKL  184 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.99  E-value=1.9e-10  Score=93.93  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~  260 (275)
                      +..++++|++.......   ..   ..   ....+-++|+||+|+...  ...+++.+.+...   ....+++++|++++
T Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  164 (183)
T 1moz_A           87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG  164 (183)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            57788899765532111   00   00   123456889999999765  3344454444321   12347999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       165 ~gi~~l~~~l  174 (183)
T 1moz_A          165 EGITEGLDWL  174 (183)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.99  E-value=2e-10  Score=94.31  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+.....+....+   +..|+++|++.......  .....       -..+-++|+||+|+.+......+.+
T Consensus        71 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  150 (195)
T 3bc1_A           71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEA  150 (195)
T ss_dssp             EEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH
Confidence            344455555543333444433   67888999775432111  10001       1345588999999976422333444


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+.....  +.+++++|++++.|++++++.+
T Consensus       151 ~~~~~~~--~~~~~~~Sa~~~~~v~~l~~~l  179 (195)
T 3bc1_A          151 RELAEKY--GIPYFETSAANGTNISHAIEML  179 (195)
T ss_dssp             HHHHHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHc--CCCEEEEECCCCCCHHHHHHHH
Confidence            4444444  3689999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.98  E-value=1.8e-10  Score=93.52  Aligned_cols=76  Identities=12%  Similarity=-0.024  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCCCcc--ccccc-------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP--RKGGP-------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~~~~-------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+......  .....       .-..+-++|+||+|+.+......+...+.....  +.+++++|++++.|+
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH--HVAYFEASAKLRLNV  159 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCeEEEecCCCCCCH
Confidence            7788888876532111  00000       113455889999999764222233333333332  578999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       160 ~~l~~~l  166 (181)
T 2fn4_A          160 DEAFEQL  166 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.98  E-value=2.6e-10  Score=94.34  Aligned_cols=76  Identities=16%  Similarity=0.022  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCCCccc--cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  ....      .-..+-++|+||+|+........+.+++..+..  +.+++++|+++++|++
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENN--GLLFLETSALDSTNVE  176 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEECTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            66788888765422110  0000      113445889999999764222334444444443  5689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       177 ~l~~~l  182 (193)
T 2oil_A          177 LAFETV  182 (193)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.98  E-value=1.9e-10  Score=92.65  Aligned_cols=76  Identities=17%  Similarity=0.034  Sum_probs=49.3

Q ss_pred             CceEEEEeCCCCCCc---ccccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI---PRKGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.....   .......      -..+-++|+||+|+.+......+...+..+..  +.+++++|+++++|+
T Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v  154 (169)
T 3q85_A           77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL--SCKHIETSAALHHNT  154 (169)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHc--CCcEEEecCccCCCH
Confidence            788899997653211   1111000      13456889999999754333444555455444  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       155 ~~l~~~l  161 (169)
T 3q85_A          155 RELFEGA  161 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.98  E-value=5.4e-10  Score=89.97  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCCCCccc---cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGP------GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|++.......   ....      .-..+-++|+||+|+.+.  ...+++.+.+..  . ....+++++|++++
T Consensus        76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (171)
T 1upt_A           76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKG  153 (171)
T ss_dssp             SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence            67888999776532211   1100      123455889999999876  334445444432  1 12457999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       154 ~gi~~l~~~l  163 (171)
T 1upt_A          154 TGLDEAMEWL  163 (171)
T ss_dssp             TTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.98  E-value=2e-10  Score=92.17  Aligned_cols=77  Identities=16%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|++.......  .....+      ..+-++|.||+|+.+......+.+.+..+..  +.+++++|+++++|++
T Consensus        80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~  157 (170)
T 1r2q_A           80 QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDN--SLLFMETSAKTSMNVN  157 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence            67888889765421111  110111      2334566799999754223334444444443  4789999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       158 ~l~~~i~  164 (170)
T 1r2q_A          158 EIFMAIA  164 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.97  E-value=3.7e-12  Score=107.71  Aligned_cols=38  Identities=34%  Similarity=0.573  Sum_probs=30.1

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d  117 (275)
                      ..+|++++|+|+||||||||+++|+|++.|  .+.++..+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d   40 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMD   40 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecC
Confidence            356899999999999999999999998765  45555443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.97  E-value=1.1e-09  Score=90.58  Aligned_cols=75  Identities=13%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc--ccc---c-----cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913          193 DYIIYIIDVSGGDKIPR--KGG---P-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~---~-----~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g  262 (275)
                      +..++++|.+.......  ...   .     .-..+-++|+||+|+.... ...+...+..+..  +.+++++|++++.|
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~g  157 (199)
T 2gf0_A           81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTREAQAVAQEW--KCAFMETSAKMNYN  157 (199)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHHHHHHHHHH--TCEEEECBTTTTBS
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHHHHHHHHHh--CCeEEEEecCCCCC
Confidence            78899999765321110  000   0     0134558899999997642 2233344444443  35899999999999


Q ss_pred             HHHHhccc
Q 023913          263 IIFTLSIT  270 (275)
Q Consensus       263 ~~~l~~~~  270 (275)
                      ++++++.+
T Consensus       158 i~~l~~~l  165 (199)
T 2gf0_A          158 VKELFQEL  165 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.97  E-value=1.1e-10  Score=94.87  Aligned_cols=77  Identities=16%  Similarity=0.058  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|++.......  .....+     ..+-++|+||+|+.+......+.........  +.+++++|++++.|+++
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~  160 (181)
T 3tw8_B           83 HGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM--GIQLFETSAKENVNVEE  160 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCCEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc--CCeEEEEECCCCCCHHH
Confidence            67788888765422111  111111     2344889999998765323334444444444  36899999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++.+.
T Consensus       161 l~~~l~  166 (181)
T 3tw8_B          161 MFNCIT  166 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.97  E-value=7.2e-10  Score=90.68  Aligned_cols=75  Identities=19%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc--cc-------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--KG-------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~-------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......  ..       ...-..+-++|+||+|+.+.. ...+.+.+..+..  +.+++++|++++.|+
T Consensus        77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi  153 (189)
T 4dsu_A           77 EGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARSY--GIPFIETSAKTRQGV  153 (189)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHHH--TCCEEECCTTTCTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHHc--CCeEEEEeCCCCCCH
Confidence            77888888765321100  00       011134568899999997542 2334444444444  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       154 ~~l~~~l  160 (189)
T 4dsu_A          154 DDAFYTL  160 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.97  E-value=2.7e-10  Score=101.38  Aligned_cols=60  Identities=7%  Similarity=-0.173  Sum_probs=45.2

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhcc
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNG  131 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig  131 (275)
                      +++.+...-..+|++++|+|+||||||||++.|++.+.++ | ++.+++.+.   ...++.+++.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~   84 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLI   84 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHH
Confidence            3455555446779999999999999999999999998887 7 788887654   2344444443

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.97  E-value=8.1e-11  Score=98.53  Aligned_cols=97  Identities=13%  Similarity=0.036  Sum_probs=57.1

Q ss_pred             ccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913          172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ...+.+++|+.....+....   ++..|+++|.+.......  .....      -..+-++|+||+|+........++..
T Consensus        75 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  154 (200)
T 2o52_A           75 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS  154 (200)
T ss_dssp             EEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHH
Confidence            44455666654332222222   267889999876432111  11011      13345889999999754222334444


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..+..  +.+++++|++++.|+++++..+
T Consensus       155 ~~~~~~--~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          155 RFAQEN--ELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             HHHHHT--TCEEEEECTTTCTTHHHHHHHH
T ss_pred             HHHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence            444443  4789999999999999998754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.97  E-value=7.2e-10  Score=103.36  Aligned_cols=101  Identities=13%  Similarity=0.037  Sum_probs=60.5

Q ss_pred             cccccccChhHHHHHHHH-HHh--cCceEEEEeCCCCC-Cccccc----cccccc-cCEEEEecCCCCccch--hhHHHH
Q 023913          171 ADLLLCESGGDNLAANFS-REL--ADYIIYIIDVSGGD-KIPRKG----GPGITQ-ADLLVINKTDLASAIG--ADLAVM  239 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~la-ral--~~~~vlllD~t~g~-d~~~~~----~~~i~~-adiivlNK~Dl~~~~~--~~~~~~  239 (275)
                      ....+.+++|..+-.... +.+  ++..|+++|++.+. ..+...    ...+.. +-++++||+|+.+...  ...+++
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i  154 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI  154 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH
Confidence            345566777754432222 222  28889999988775 222111    111222 3477899999987621  122333


Q ss_pred             HHHHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.+.... ...+++++|+++|.|++++++.+.
T Consensus       155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~  187 (403)
T 3sjy_A          155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIE  187 (403)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHH
Confidence            33333333 367899999999999999988653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.97  E-value=1.2e-09  Score=104.19  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=64.1

Q ss_pred             cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhH----HHH
Q 023913          171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADL----AVM  239 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~----~~~  239 (275)
                      ....+.+++|..+....... +.  +..|+++|++.+...+...    ...+..+-++++||+|+.+.  ...    +++
T Consensus        73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~~l  150 (482)
T 1wb1_A           73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMIM  150 (482)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHHHH
Confidence            45567778887654333322 22  7899999998875433221    12234566999999999875  333    333


Q ss_pred             HHHHHhc--CCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRM--RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~--~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+.++..  .+..+++++|+++|.|++++++.+
T Consensus       151 ~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L  183 (482)
T 1wb1_A          151 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLI  183 (482)
T ss_dssp             HHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHhhhcccccceEEEEECcCCCCHHHHHHHH
Confidence            4444432  236789999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.97  E-value=1.2e-10  Score=94.89  Aligned_cols=76  Identities=18%  Similarity=0.058  Sum_probs=48.3

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.......  .....+      ..+-++|+||+|+.+......+.+++..+..  +.+++++|+++++|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~  163 (181)
T 2efe_B           86 AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN--GLFFMETSAKTATNVK  163 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEECCSSSCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc--CCEEEEEECCCCCCHH
Confidence            67888889765422110  110111      2345788999999764323344555554443  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       164 ~l~~~l  169 (181)
T 2efe_B          164 EIFYEI  169 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.97  E-value=6.5e-10  Score=88.48  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCcc--cccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP--RKGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|++......  ......       -..+-++|+||+|+.+.. ...+.+.+..++.  +.+++++|++++.|+
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  152 (166)
T 2ce2_X           76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VESRQAQDLARSY--GIPYIETSAKTRQGV  152 (166)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHHH--TCCEEEECTTTCTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCHHHHHHHHHHc--CCeEEEecCCCCCCH
Confidence            7788888976432111  000011       134558899999997642 2334444444443  358999999999999


Q ss_pred             HHHhcccc
Q 023913          264 IFTLSITH  271 (275)
Q Consensus       264 ~~l~~~~~  271 (275)
                      +++++.+.
T Consensus       153 ~~l~~~l~  160 (166)
T 2ce2_X          153 EDAFYTLV  160 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.96  E-value=3.4e-10  Score=93.44  Aligned_cols=98  Identities=14%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             ccccccChhHHHHH-HHHHHhc---CceEEEEeCCCCCCccc---cc---cc---cccccCEEEEecCCCCccchhhHHH
Q 023913          172 DLLLCESGGDNLAA-NFSRELA---DYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAV  238 (275)
Q Consensus       172 d~~~~eS~G~~q~~-~laral~---~~~vlllD~t~g~d~~~---~~---~~---~i~~adiivlNK~Dl~~~~~~~~~~  238 (275)
                      ...+.+++|+.+-. .+.....   +..|+++|.+.......   ..   ..   ....+-++|+||+|+.+......+.
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  149 (189)
T 1z06_A           70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL  149 (189)
T ss_dssp             EEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHH
Confidence            34445566654322 3333332   67889999875321110   00   00   1134558899999997642223344


Q ss_pred             HHHHHHhcCCCCCEEEEEecCC---cCHHHHhcccc
Q 023913          239 MERDALRMRDGGPFIFAQVGWV---IGIIFTLSITH  271 (275)
Q Consensus       239 ~~~~i~~~~~~~~ii~~S~~~~---~g~~~l~~~~~  271 (275)
                      +++..+..  +.+++++|++++   +++++++..+.
T Consensus       150 ~~~~~~~~--~~~~~~~Sa~~~~~~~~i~~l~~~l~  183 (189)
T 1z06_A          150 AQKFADTH--SMPLFETSAKNPNDNDHVEAIFMTLA  183 (189)
T ss_dssp             HHHHHHHT--TCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             HHHHHHHc--CCEEEEEeCCcCCcccCHHHHHHHHH
Confidence            44433333  468999999999   99999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.96  E-value=1.3e-10  Score=95.17  Aligned_cols=95  Identities=12%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccc---c---cccccCEEEEecCCCCccchhhHHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGG---P---GITQADLLVINKTDLASAIGADLAVMERD  242 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~  242 (275)
                      .+.+++|+.....+.....   +..|+++|++.......  ...   .   .-..+-++|+||+|+........++..+.
T Consensus        62 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  141 (186)
T 2bme_A           62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF  141 (186)
T ss_dssp             EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            3444555443333333333   67788899776422111  000   0   11334588999999975422333444444


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..  +.+++++|+++++|+++++..+
T Consensus       142 ~~~~--~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A          142 AQEN--ELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             HHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHc--CCEEEEecCCCCCCHHHHHHHH
Confidence            4443  4789999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.96  E-value=7.9e-11  Score=110.52  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             CCCCCCccccccccCCCcE--EEEEcCCcchHHHHHHHHHhcc
Q 023913           65 FSRRAPPILSRNFNERAFT--VGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~gei--v~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      |++.. +.+.++...+|++  ++|+|+||||||||||+|+|+.
T Consensus        25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            33444 5555566677999  9999999999999999999983

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.96  E-value=2.5e-10  Score=92.50  Aligned_cols=77  Identities=18%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|++.......  .....+      ..+-++|+||+|+.+......+......+..  +.+++++|++++.|++
T Consensus        88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~  165 (179)
T 2y8e_A           88 TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVK  165 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEEEBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence            67888999765321110  110111      2344889999999764322334444444444  4689999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      ++++.+.
T Consensus       166 ~l~~~l~  172 (179)
T 2y8e_A          166 QLFRRVA  172 (179)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.96  E-value=1.9e-11  Score=107.91  Aligned_cols=73  Identities=23%  Similarity=0.181  Sum_probs=46.5

Q ss_pred             CceEEEEeCCCCCCcccccc--cccc-ccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          193 DYIIYIIDVSGGDKIPRKGG--PGIT-QADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~~--~~i~-~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      +..++++|+++.........  .... .+-++|+||+|+.+...  ...+.+.+.+     +.+++++|++++.|+++++
T Consensus        83 d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~~~~~Sa~~g~gi~~l~  157 (271)
T 3k53_A           83 DVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-----GVPVIPTNAKKGEGVEELK  157 (271)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-----SSCEEECBGGGTBTHHHHH
T ss_pred             cEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHc-----CCcEEEEEeCCCCCHHHHH
Confidence            67788888876532111110  1123 66789999999865421  2233343333     4789999999999999998


Q ss_pred             ccc
Q 023913          268 SIT  270 (275)
Q Consensus       268 ~~~  270 (275)
                      +.+
T Consensus       158 ~~i  160 (271)
T 3k53_A          158 RMI  160 (271)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.96  E-value=4.4e-10  Score=94.18  Aligned_cols=98  Identities=14%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ...+.+++|+.+-..+....+   +..|+++|.+.......  .....      -..+-+||+||+|+........+.++
T Consensus        79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~  158 (201)
T 2hup_A           79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQ  158 (201)
T ss_dssp             EEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHH
Confidence            344555666543333333332   67888999765322111  11111      12345788999999764223344555


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..+..+ ..+++++|+++++|++++++.+
T Consensus       159 ~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          159 SLAEHYD-ILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             HHHHHTT-CSEEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHcC-CCEEEEEeCCCCCCHHHHHHHH
Confidence            5554442 2389999999999999998864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.96  E-value=2.8e-10  Score=90.80  Aligned_cols=72  Identities=13%  Similarity=0.011  Sum_probs=46.2

Q ss_pred             CceEEEEeCCCCCCcccc-cc---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRK-GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~-~~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|.+........ ..   .....+-++|+||+|+.+.. ..   +.+. .++ ...+++++|++++.|++++++
T Consensus        81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~---~~~~-~~~-~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-LY---LGPL-YGL-GFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             SEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-GG---CGGG-GGG-SSCSCEECBTTTTBSHHHHHH
T ss_pred             CEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-Hh---HHHH-HhC-CCCCeEEEecccCCChHHHHH
Confidence            678889998775432211 11   11245668999999997651 12   1111 222 223799999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       155 ~l  156 (161)
T 2dyk_A          155 AI  156 (161)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.95  E-value=4.4e-10  Score=93.52  Aligned_cols=147  Identities=14%  Similarity=0.098  Sum_probs=80.3

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~  156 (275)
                      +..+.-.++|+|+.|+|||||++.+++-..     .  ...+          .+++....                    
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~-----~--~~~~----------t~~~~~~~--------------------   67 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEI-----V--TTIP----------TIGFNVET--------------------   67 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCC-----E--EEEE----------ETTEEEEE--------------------
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCc-----c--ccCC----------cCceeEEE--------------------
Confidence            445567899999999999999999975311     0  0000          01110000                    


Q ss_pred             HHHHHHHHhhcccccccccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--c-cc------ccccccCEEEEe
Q 023913          157 INLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--K-GG------PGITQADLLVIN  224 (275)
Q Consensus       157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~-~~------~~i~~adiivlN  224 (275)
                              + ........+.+++|+.+-..+.+..   ++..++++|.+.......  . ..      ..-..+-++|+|
T Consensus        68 --------~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  138 (192)
T 2b6h_A           68 --------V-EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN  138 (192)
T ss_dssp             --------E-EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             --------E-EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence                    0 0011233444556643322222222   277889999876532111  0 00      011345688999


Q ss_pred             cCCCCccchhhHHHHHHHHHhc---CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          225 KTDLASAIGADLAVMERDALRM---RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       225 K~Dl~~~~~~~~~~~~~~i~~~---~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      |+|+...  ...+++.+.+...   ....+++++|++++.|++++++.+.
T Consensus       139 K~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  186 (192)
T 2b6h_A          139 KQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS  186 (192)
T ss_dssp             CTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             CCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence            9999765  3344454443321   1245799999999999999988653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.95  E-value=1.5e-10  Score=93.12  Aligned_cols=75  Identities=20%  Similarity=0.086  Sum_probs=46.8

Q ss_pred             CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|++.......  .....      -..+-++|+||+|+.... ...+...+..++.  +.+++++|++++.|++
T Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~  153 (170)
T 1g16_A           77 MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKEL--GIPFIESSAKNDDNVN  153 (170)
T ss_dssp             EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHHH--TCCEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence            67788899775422111  11011      133458899999995431 2334444444444  3689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       154 ~l~~~l  159 (170)
T 1g16_A          154 EIFFTL  159 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.95  E-value=5.8e-11  Score=98.51  Aligned_cols=56  Identities=16%  Similarity=0.194  Sum_probs=39.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchh
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      ..+|++++|+||||||||||+++|++.  ++ |.|.+.+.++.....  ..+.++|++|..
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~   62 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSH   62 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchh
Confidence            356999999999999999999999997  55 777776644321100  012357777754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=94.89  Aligned_cols=96  Identities=20%  Similarity=0.140  Sum_probs=54.3

Q ss_pred             cccccChhHHHHHHHHHHh---cCceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCcc------chhh
Q 023913          173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASA------IGAD  235 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral---~~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~------~~~~  235 (275)
                      ..+.+++|+.....+....   ++..|+++|++.......  .....+      ..+-+||+||+|+...      ....
T Consensus        79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~  158 (199)
T 2p5s_A           79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVP  158 (199)
T ss_dssp             EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCC
T ss_pred             EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccC
Confidence            3444555543322222222   278899999875432111  110111      3456889999999632      1112


Q ss_pred             HHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          236 LAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       236 ~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+..++..+..  +.+++++|+++++|+++++..+
T Consensus       159 ~~~~~~~~~~~--~~~~~~~SA~~g~gv~el~~~l  191 (199)
T 2p5s_A          159 GHFGEKLAMTY--GALFCETSAKDGSNIVEAVLHL  191 (199)
T ss_dssp             HHHHHHHHHHH--TCEEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCeEEEeeCCCCCCHHHHHHHH
Confidence            23333333443  4689999999999999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.94  E-value=2.4e-10  Score=96.25  Aligned_cols=24  Identities=29%  Similarity=0.211  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ...++|+|+.|+|||||++.+++-
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999975

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.94  E-value=2.2e-10  Score=94.85  Aligned_cols=76  Identities=16%  Similarity=0.037  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-+||+||+|+.+......+.+++..+..  +.+++++|+++++|++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREH--GLIFMETSAKTACNVE  172 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEEECTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            67888999875432111  110111      2345788999999754222334444444444  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       173 ~l~~~l  178 (191)
T 2a5j_A          173 EAFINT  178 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.94  E-value=1.3e-09  Score=89.78  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=52.6

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+.....+....+   +..++++|.+.......  .....       -..+-++|+||+|+.+.. ...+.+
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~  148 (190)
T 3con_A           70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDTKQA  148 (190)
T ss_dssp             EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHH
T ss_pred             EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCHHHH
Confidence            344555666543333333333   67788888765421110  00001       124558899999997631 233444


Q ss_pred             HHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          240 ERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ++..++.  +.+++++|++++.|++++++.+
T Consensus       149 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A          149 HELAKSY--GIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             HHHHHHH--TCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            4444444  3589999999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.94  E-value=3.2e-10  Score=93.68  Aligned_cols=77  Identities=17%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             CceEEEEeCCCCCCccc---ccc-----cc---ccccCEEEEecCCCCccchhhHHHHHHHHH--hcC-CCCCEEEEEec
Q 023913          193 DYIIYIIDVSGGDKIPR---KGG-----PG---ITQADLLVINKTDLASAIGADLAVMERDAL--RMR-DGGPFIFAQVG  258 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~-----~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~~-~~~~ii~~S~~  258 (275)
                      +..++++|.+.......   ...     ..   -..+-++|+||+|+...  ...+++.+.+.  .+. .+.+++++|++
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            67788888765421110   000     00   13456889999999865  34455555553  222 35689999999


Q ss_pred             CCcCHHHHhcccc
Q 023913          259 WVIGIIFTLSITH  271 (275)
Q Consensus       259 ~~~g~~~l~~~~~  271 (275)
                      ++.|++++++.+.
T Consensus       170 ~~~gi~~l~~~l~  182 (190)
T 2h57_A          170 KGEGLQEGVDWLQ  182 (190)
T ss_dssp             TTBTHHHHHHHHH
T ss_pred             CCcCHHHHHHHHH
Confidence            9999999987653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.94  E-value=1.1e-10  Score=97.31  Aligned_cols=52  Identities=19%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +-++++||+|+........+..++...  .|...++.+|++++.+++++++.+.
T Consensus       136 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~--~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          136 VIMLVGNKSDLRHLRAVPTDEARAFAE--KNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cEEEEEECcccccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            457889999997542223333433333  3567899999999999999988653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.94  E-value=2.2e-10  Score=96.53  Aligned_cols=76  Identities=13%  Similarity=-0.040  Sum_probs=46.7

Q ss_pred             CceEEEEeCCCCCCcc--cccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIP--RKGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+......  ......      -..+-++|+||+|+.+......+.+++..+..  +.+++++|+++++|++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~gv~  177 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ--DMYYLETSAKESDNVE  177 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            6778888976542211  000011      12345788999999754222233444433333  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       178 ~l~~~l  183 (201)
T 2ew1_A          178 KLFLDL  183 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.94  E-value=1.2e-10  Score=97.26  Aligned_cols=76  Identities=18%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....      -..+-++|+||+|+........+.+.+..+.+  +.+++++|++++.|++
T Consensus        82 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           82 MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEASAKDNINVK  159 (203)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--TCEEEECBTTTTBSSH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC--CCeEEEEECCCCCCHH
Confidence            67788889765422110  01011      13455889999999764323334444444444  3589999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       160 ~l~~~l  165 (203)
T 1zbd_A          160 QTFERL  165 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.94  E-value=8.8e-10  Score=100.83  Aligned_cols=195  Identities=16%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             CCCcceeecCCCCccccCCCCCCCccccccCCC----CCCC-CCCcc--ccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG----YFSR-RAPPI--LSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~-~~~~~--~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..-+..+.++..+...-..+..|..+..|..+-    +|.. .++-.  ....-.+--..++|+|++|||||||++.|++
T Consensus       101 ~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~  180 (342)
T 1lnz_A          101 KQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSS  180 (342)
T ss_dssp             CCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEE
T ss_pred             CcEehhhhcCCcEEEEeCCCCCccCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHc
Confidence            344556666666667777777777666665543    0000 00000  0000111134689999999999999999987


Q ss_pred             ccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHHHHHHhhcccccccccccChhHHH
Q 023913          104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL  183 (275)
Q Consensus       104 ~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q  183 (275)
                      .-+     .+....+.+..+     .++.+.                                ........+.+++|+..
T Consensus       181 ~~~-----~i~~~~ftTl~p-----~~g~v~--------------------------------~~~~~~~~l~DtPG~i~  218 (342)
T 1lnz_A          181 AKP-----KIADYHFTTLVP-----NLGMVE--------------------------------TDDGRSFVMADLPGLIE  218 (342)
T ss_dssp             ECC-----EESSTTSSCCCC-----CEEEEE--------------------------------CSSSCEEEEEEHHHHHH
T ss_pred             CCC-----ccccCCccccCc-----eEEEEE--------------------------------eCCCceEEEecCCCCcc
Confidence            521     121111111111     011100                                00001122222333211


Q ss_pred             --------HHHHHHHh--cCceEEEEeCCCC--CCccc----------ccc-ccccccCEEEEecCCCCccchhhHHHHH
Q 023913          184 --------AANFSREL--ADYIIYIIDVSGG--DKIPR----------KGG-PGITQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       184 --------~~~laral--~~~~vlllD~t~g--~d~~~----------~~~-~~i~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                              ...+.+.+  ++..|+++|.+..  .+...          .+. .....+-+||+||+|+...  .  +.++
T Consensus       219 ~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~--e~~~  294 (342)
T 1lnz_A          219 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A--ENLE  294 (342)
T ss_dssp             HTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H--HHHH
T ss_pred             cccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H--HHHH
Confidence                    11122322  3778899998652  11111          010 1124566899999999864  1  2233


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +..+.+....+++++|+++++|+++++..+.
T Consensus       295 ~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~  325 (342)
T 1lnz_A          295 AFKEKLTDDYPVFPISAVTREGLRELLFEVA  325 (342)
T ss_dssp             HHHHHCCSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred             HHHHHhhcCCCEEEEECCCCcCHHHHHHHHH
Confidence            3334444346899999999999999987653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.93  E-value=4.6e-11  Score=98.69  Aligned_cols=76  Identities=18%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.......  .....+      ..+-++|+||+|+.+......+.+++..+..  +.+++++|+++++|++
T Consensus        96 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A           96 MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--GFEFFEASAKENINVK  173 (189)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence            67788888765422111  111111      2345889999999764322334444444444  3689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       174 ~l~~~l  179 (189)
T 2gf9_A          174 QVFERL  179 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.93  E-value=6.7e-10  Score=92.26  Aligned_cols=76  Identities=14%  Similarity=0.035  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCcc--cc-c---c---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc-C
Q 023913          193 DYIIYIIDVSGGDKIP--RK-G---G---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI-G  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~-~---~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~-g  262 (275)
                      +..++++|++......  .. .   .   ..-..+-++|+||+|+........+...+..+..  +.+++++|+++++ |
T Consensus       100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--ACAFYECSACTGEGN  177 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSEEEECCTTTCTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh--CCeEEEECCCcCCcC
Confidence            7888999977532110  00 0   0   0113345889999999764222334444444444  4689999999999 9


Q ss_pred             HHHHhccc
Q 023913          263 IIFTLSIT  270 (275)
Q Consensus       263 ~~~l~~~~  270 (275)
                      ++++++.+
T Consensus       178 i~~l~~~l  185 (196)
T 2atv_A          178 ITEIFYEL  185 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.93  E-value=1.8e-09  Score=97.96  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCCh----HHH-----HHhcccc-CchhHHHHHhcCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEERIRAVETGGC  146 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~----~~~-----~~~ig~v-~q~~~~~~~~~~~  146 (275)
                      ..++++++|+|+||+||||++..|++.+.+. ++|.+.+.|+.....    ..+     +..++++ +|..         
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~---------  172 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL---------  172 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST---------
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC---------
Confidence            4569999999999999999999999999887 899999988753211    112     1234444 2221         


Q ss_pred             CccchHHHHHHHHHHHHHhhcccccccccccChhHHHH--------HHHHHHh---c----CceEEEEeCCCCCCccccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA--------ANFSREL---A----DYIIYIIDVSGGDKIPRKG  211 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~--------~~laral---~----~~~vlllD~t~g~d~~~~~  211 (275)
                       .....   ....+.+... ....+|++++++.|..+.        ..+.+.+   .    +..++++|++.+.+.....
T Consensus       173 -~~~p~---~~~~~~l~~~-~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~~  247 (320)
T 1zu4_A          173 -NADPA---SVVFDAIKKA-KEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQA  247 (320)
T ss_dssp             -TCCHH---HHHHHHHHHH-HHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHHH
T ss_pred             -CCCHH---HHHHHHHHHH-HhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHHH
Confidence             00000   0112223222 245689999996663221        1111222   1    3347888877653322111


Q ss_pred             ccccc-c--cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          212 GPGIT-Q--ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       212 ~~~i~-~--adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      . .+. .  -.-+|+||.|.....+    .+.......  +.||.++.  .|+.++++.
T Consensus       248 ~-~~~~~~~i~GvVltk~d~~~~~g----~~~~~~~~~--~~Pi~~i~--~Ge~~~dl~  297 (320)
T 1zu4_A          248 E-EFSKVADVSGIILTKMDSTSKGG----IGLAIKELL--NIPIKMIG--VGEKVDDLL  297 (320)
T ss_dssp             H-HHTTTSCCCEEEEECGGGCSCTT----HHHHHHHHH--CCCEEEEE--CSSSTTCEE
T ss_pred             H-HHhhcCCCcEEEEeCCCCCCchh----HHHHHHHHH--CcCEEEEe--CCCCccccc
Confidence            1 111 1  2358999999755422    222333333  47787776  477776543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.93  E-value=3.1e-10  Score=94.63  Aligned_cols=76  Identities=12%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCccc--ccccc----------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~----------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~  260 (275)
                      +..|+++|.+.......  .....          -..+-++|+||+|+.... ...+.+.+.... ....+++++|++++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~~~Sa~~g  159 (207)
T 1vg8_A           82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKRAQAWCYS-KNNIPYFETSAKEA  159 (207)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHHHHHHHHH-TTSCCEEECBTTTT
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHHHHHHHHh-cCCceEEEEeCCCC
Confidence            67788888765421110  00000          134558899999997431 233444443332 45678999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      .|++++++.+
T Consensus       160 ~gi~~l~~~l  169 (207)
T 1vg8_A          160 INVEQAFQTI  169 (207)
T ss_dssp             BSHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999998754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.93  E-value=2.6e-09  Score=100.65  Aligned_cols=169  Identities=15%  Similarity=0.221  Sum_probs=97.5

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--h-HHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--I-REDI  155 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~-~~~~  155 (275)
                      +..+++++|++||||||++..|+..+... .++.++..|.......+..+..          ....+.++..  . ....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~----------~~~~gvpv~~~~~~~dp~  168 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL----------LDRYHIEVFGNPQEKDAI  168 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHH----------HGGGTCEEECCTTCCCHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHH----------HHhcCCcEEecCCCCCHH
Confidence            47899999999999999999999988776 6888888876543211111110          0011111110  0 0111


Q ss_pred             HHHHHHHHHhhcccccccccccChhHH--------HHHHHHHHhc-CceEEEEeCCCCCCcccccccccc---ccCEEEE
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGDN--------LAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT---QADLLVI  223 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~--------q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~---~adiivl  223 (275)
                      ....++++.+ ....+|.+++++.|..        ....+.++.. +..++++|++.+.+..... ..|.   ....||+
T Consensus       169 ~i~~~al~~a-~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a-~~f~~~~~i~gVIl  246 (443)
T 3dm5_A          169 KLAKEGVDYF-KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA-LAFKEATPIGSIIV  246 (443)
T ss_dssp             HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHH-HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH-HHHHhhCCCeEEEE
Confidence            1122344443 2345899999977631        1122222332 5689999998876543221 1121   2346899


Q ss_pred             ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ||+|.....+..+    .....  -+.||.+++.  |+++++|-.
T Consensus       247 TKlD~~~~gG~~l----s~~~~--~g~PI~fig~--Ge~vddL~~  283 (443)
T 3dm5_A          247 TKLDGSAKGGGAL----SAVAA--TGAPIKFIGT--GEKIDDIEP  283 (443)
T ss_dssp             ECCSSCSSHHHHH----HHHHT--TCCCEEEEEC--SSSTTCEEE
T ss_pred             ECCCCcccccHHH----HHHHH--HCCCEEEEEc--CCChHHhhh
Confidence            9999986632222    22222  3678998885  888876654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.92  E-value=5.8e-11  Score=104.32  Aligned_cols=73  Identities=23%  Similarity=0.160  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..|+++|+++......  .....+..+-++|+||+|+.....  ...+.+.+.+     +.+++++|+++++|++++++
T Consensus        85 d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           85 DCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLL-----GCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHH-----CSCEEECBGGGTBSHHHHHH
T ss_pred             CEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-----CCCEEEEECCCCCCHHHHHH
Confidence            67788889776211100  011223567789999999875421  2333343333     47899999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       160 ~i  161 (256)
T 3iby_A          160 SL  161 (256)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.92  E-value=3.5e-10  Score=95.68  Aligned_cols=62  Identities=16%  Similarity=0.080  Sum_probs=39.8

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHH
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV  141 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~  141 (275)
                      ....+|++++|+||||||||||+++|+|+++.- +.+.+...+..    ...++.++|++|++..+.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~----~~~~~~i~~~~q~~~~~~   77 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPR----PGEVDGVDYHFIDPTRFQ   77 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCC----TTCCBTTTBEECCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCc----ccccCCCeeEecCHHHHH
Confidence            355779999999999999999999999998522 22222111111    112356899999875443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.92  E-value=2.3e-10  Score=93.39  Aligned_cols=76  Identities=13%  Similarity=-0.055  Sum_probs=47.6

Q ss_pred             CceEEEEeCCCCCCccc---c---c---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR---K---G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~---~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......   .   .   ...-..+-++|+||+|+........+.+++..+..  +.+++++|++++.|+
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A           79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESW--NAAFLESSAKENQTA  156 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEECCTTSHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHh--CCcEEEEecCCCCCH
Confidence            56788888765321110   0   0   00113456889999999755333445555555554  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       157 ~~l~~~l  163 (181)
T 3t5g_A          157 VDVFRRI  163 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.92  E-value=8.5e-10  Score=90.48  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCccc---ccc---c---cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KGG---P---GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|.+.......   ...   .   .-..+-++|+||+|+...  ...+++.+.+..  . ....+++++|++++
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            67888999876532211   010   1   123345888999999765  233445444321  1 12457999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       168 ~gi~~l~~~l  177 (181)
T 2h17_A          168 EGLCQGLEWM  177 (181)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.91  E-value=3.9e-10  Score=91.55  Aligned_cols=76  Identities=16%  Similarity=0.036  Sum_probs=47.5

Q ss_pred             CceEEEEeCCCCCCccc--cccccc--------ccc-CEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI--------TQA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i--------~~a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~  261 (275)
                      +..++++|++.......  .....+        ..+ -++|+||+|+.+......+.+.+..+..  +.+++++|++++.
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~  158 (178)
T 2hxs_A           81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN--GFSSHFVSAKTGD  158 (178)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEEECTTTCT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc--CCcEEEEeCCCCC
Confidence            77889999876432111  110111        233 3678999999764222234444444443  3689999999999


Q ss_pred             CHHHHhccc
Q 023913          262 GIIFTLSIT  270 (275)
Q Consensus       262 g~~~l~~~~  270 (275)
                      |++++++.+
T Consensus       159 gi~~l~~~l  167 (178)
T 2hxs_A          159 SVFLCFQKV  167 (178)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999998765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.91  E-value=1.7e-10  Score=96.06  Aligned_cols=97  Identities=20%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--ccccc---------ccccCEEEEecCCCCc-cchhhH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPG---------ITQADLLVINKTDLAS-AIGADL  236 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~---------i~~adiivlNK~Dl~~-~~~~~~  236 (275)
                      ...+.+++|+..-..+.....   +..|+++|.+.......  .....         -..+-++|+||+|+.. ......
T Consensus        74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~  153 (208)
T 2yc2_C           74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRL  153 (208)
T ss_dssp             EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCH
T ss_pred             EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCH
Confidence            445566777655444444443   67888999876432111  11111         1334588999999986 322334


Q ss_pred             HHHHHHHHhcCCCCCEEEEEecC-CcCHHHHhccc
Q 023913          237 AVMERDALRMRDGGPFIFAQVGW-VIGIIFTLSIT  270 (275)
Q Consensus       237 ~~~~~~i~~~~~~~~ii~~S~~~-~~g~~~l~~~~  270 (275)
                      +.+.+..+.++  .+++++|+++ +.|++++++.+
T Consensus       154 ~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i  186 (208)
T 2yc2_C          154 DMAQDWATTNT--LDFFDVSANPPGKDADAPFLSI  186 (208)
T ss_dssp             HHHHHHHHHTT--CEEEECCC-------CHHHHHH
T ss_pred             HHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHH
Confidence            55555555553  7899999999 99999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.91  E-value=1.2e-10  Score=97.54  Aligned_cols=76  Identities=21%  Similarity=0.058  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.......  .....      -..+-+||+||+|+.+......+.+.+.....  +.+++++|++++.|++
T Consensus        82 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           82 HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN--KMPFLETSALDSTNVE  159 (206)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCeEEEEeCCCCCCHH
Confidence            67788899876432111  00001      12345889999999864223334444444443  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       160 ~l~~~l  165 (206)
T 2bcg_Y          160 DAFLTM  165 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.91  E-value=1e-09  Score=90.31  Aligned_cols=75  Identities=20%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             CceEEEEeCCCCCCccc--c----cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--K----GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~----~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|++.......  .    ....   -..+-++|+||+|+.... ...+...+..+..  +.+++++|++++.|+
T Consensus        89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  165 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARKH--SMLFIEASAKTCDGV  165 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHHT--TCEEEECCTTTCTTH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHHHHHHHHHc--CCEEEEecCCCCCCH
Confidence            67888899765421110  0    0010   123457899999996432 2234444444443  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       166 ~~l~~~l  172 (195)
T 1x3s_A          166 QCAFEEL  172 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.90  E-value=1.2e-09  Score=100.70  Aligned_cols=55  Identities=13%  Similarity=-0.055  Sum_probs=36.8

Q ss_pred             ccCEEEEecCCCCccchhh-HHHHHHHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          217 QADLLVINKTDLASAIGAD-LAVMERDALRM-RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~-~~~~~~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+-++|.||+|+.+..... .+.+.+..+.+ .+..+++++|+++++|++++++.+.
T Consensus       293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~  349 (364)
T 2qtf_A          293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIY  349 (364)
T ss_dssp             CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHH
Confidence            4568899999998752111 12222223444 4445789999999999999987653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.90  E-value=1.5e-10  Score=92.96  Aligned_cols=77  Identities=14%  Similarity=-0.087  Sum_probs=46.4

Q ss_pred             CceEEEEeCCCCCCccc--ccccc------ccccCEEEEecCCCCcc---chhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG------ITQADLLVINKTDLASA---IGADLAVMERDALRMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~------i~~adiivlNK~Dl~~~---~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~  261 (275)
                      +..++++|++.......  .....      -..+-++|+||+|+.+.   .....+..++..+..  +.+++++|++++.
T Consensus        77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~  154 (170)
T 1ek0_A           77 QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK--GLLFFETSAKTGE  154 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH--TCEEEECCTTTCT
T ss_pred             cEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc--CCEEEEEeCCCCC
Confidence            67788888775421110  00001      13345788999999754   112223333333333  4689999999999


Q ss_pred             CHHHHhcccc
Q 023913          262 GIIFTLSITH  271 (275)
Q Consensus       262 g~~~l~~~~~  271 (275)
                      |++++++.+.
T Consensus       155 gi~~l~~~l~  164 (170)
T 1ek0_A          155 NVNDVFLGIG  164 (170)
T ss_dssp             THHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.90  E-value=4.5e-09  Score=86.84  Aligned_cols=78  Identities=5%  Similarity=-0.001  Sum_probs=48.5

Q ss_pred             cCceEEEEeCCCCCCccc---ccc------ccccccCEEEEecCCCCc--cchhhHHHHHHHHHhcCCCCCEEEEEecCC
Q 023913          192 ADYIIYIIDVSGGDKIPR---KGG------PGITQADLLVINKTDLAS--AIGADLAVMERDALRMRDGGPFIFAQVGWV  260 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~---~~~------~~i~~adiivlNK~Dl~~--~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~  260 (275)
                      ++..++++|.+.......   ...      ..-..+-++|.||+|+..  ......+.+.+..+.+ ...+++++|++++
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~  164 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL-KRCTYYETCATYG  164 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT-TTCEEEEEBTTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc-CCCeEEEecCCCC
Confidence            377888899775421111   110      012345578899999952  2112334454444444 3578999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       165 ~gv~~lf~~l  174 (184)
T 3ihw_A          165 LNVERVFQDV  174 (184)
T ss_dssp             BTHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999998864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.90  E-value=6.7e-10  Score=92.72  Aligned_cols=51  Identities=18%  Similarity=0.001  Sum_probs=35.9

Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +-++|+||+|+........+.+++.+.+  ++..++.+|++++.+++++++.+
T Consensus       112 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~--~~~~~~d~Sal~~~~i~~l~~~l  162 (199)
T 2f9l_A          112 VIMLVGNKSDLRHLRAVPTDEARAFAEK--NNLSFIETSALDSTNVEEAFKNI  162 (199)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTHHHHHHHH
T ss_pred             eEEEEEECcccccccCcCHHHHHHHHHH--cCCeEEEEeCCCCCCHHHHHHHH
Confidence            4578899999975422233334443333  56789999999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.89  E-value=3.4e-10  Score=94.59  Aligned_cols=76  Identities=13%  Similarity=-0.029  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCCCccc--ccc----c---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGG----P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~----~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......  ...    .   .-..+-++|+||+|+.+......+...+..+..  +.+++++|++++.|+
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~v  174 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--GATFMESSARENQLT  174 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECCTTCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--CCeEEEEeCCCCCCH
Confidence            66788888764321110  000    0   113456889999999765323334444444444  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       175 ~~l~~~l  181 (201)
T 3oes_A          175 QGIFTKV  181 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.89  E-value=1.9e-10  Score=107.91  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=38.5

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      +..+|++++|+|||||||||||++|++++.++ |+|.+++.++.
T Consensus       163 ~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  206 (418)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence            45679999999999999999999999999887 99999887663

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.89  E-value=1.7e-10  Score=113.14  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=36.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccCCCC--C-hHHHHHhccccCchh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTK--E-DGEFLMRNGALPEER  137 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~~~~--~-~~~~~~~ig~v~q~~  137 (275)
                      -+.++|+|+|||||||||++|+|++.| + |.|.+.+.++...  . ...+++.+||++|+.
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred             CCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence            456999999999999999999999878 5 8888777664211  1 123456799999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.89  E-value=4.4e-10  Score=93.94  Aligned_cols=76  Identities=17%  Similarity=0.056  Sum_probs=48.2

Q ss_pred             CceEEEEeCCCCCC---ccccccc------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDK---IPRKGGP------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|.+....   .......      ....+-++|.||+|+........+..++..+..  +.+++++|++++.|+
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL--SCKHIETSAALHHNT  175 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHh--CCEEEEEcCCCCCCH
Confidence            77888999764321   1111100      013456789999999754323344444444444  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       176 ~~lf~~l  182 (195)
T 3cbq_A          176 RELFEGA  182 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.89  E-value=3.2e-11  Score=102.17  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      ..+|++++|+||||||||||+++|+|+++|+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~   49 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ   49 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4569999999999999999999999999853

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.87  E-value=4.5e-10  Score=94.32  Aligned_cols=77  Identities=13%  Similarity=0.026  Sum_probs=46.7

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+.+...            ...+......+. ....++
T Consensus       103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~  181 (204)
T 4gzl_A          103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKY  181 (204)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh-cCCcEE
Confidence            67788888775432111   111111     345688999999976521            111222233333 234569


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|+++++|++++++.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l  199 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEA  199 (204)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHH
Confidence            999999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.87  E-value=1.9e-09  Score=91.80  Aligned_cols=76  Identities=13%  Similarity=0.022  Sum_probs=45.7

Q ss_pred             CceEEEEeCCCCCC---cccc---ccc--c-ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDK---IPRK---GGP--G-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~---~~~--~-i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|.+....   ....   ...  . -..+-++|.||+|+........++.+......  +.+++++||++|+|+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~--~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF--DCKFIETSAAVQHNV  190 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHc--CCEEEEEeCCCCCCH
Confidence            67888889764311   1100   000  0 13455788999999753212223332333333  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      +++++.+
T Consensus       191 ~elf~~l  197 (211)
T 2g3y_A          191 KELFEGI  197 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.87  E-value=2e-10  Score=96.94  Aligned_cols=76  Identities=8%  Similarity=-0.044  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-++|+||+|+........+.+.+..+.  .+.+++++|++++.|++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~  163 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG--KNYEYFEISAKTAHNFG  163 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTT--CCCEEEEEBTTTTBTTT
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--cCCcEEEEecCCCCCHH
Confidence            67888999876532111  000111      245688999999976522223333333322  35789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       164 ~l~~~l  169 (218)
T 4djt_A          164 LPFLHL  169 (218)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.87  E-value=2.4e-09  Score=90.54  Aligned_cols=97  Identities=11%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             cccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch--------
Q 023913          173 LLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG--------  233 (275)
Q Consensus       173 ~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~--------  233 (275)
                      ..+.+++|+..-..+.....   +..++++|.+.......   .....+     ..+-++|+||+|+.....        
T Consensus        84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  163 (214)
T 2j1l_A           84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRN  163 (214)
T ss_dssp             EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred             EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccc
Confidence            34445666543333333322   67788889775422111   111111     345588899999986521        


Q ss_pred             ----hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          234 ----ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       234 ----~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                          ...++..+..+.+ ...+++++|++++.|++++++.+
T Consensus       164 ~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~el~~~l  203 (214)
T 2j1l_A          164 GLEPVTYHRGQEMARSV-GAVAYLECSARLHDNVHAVFQEA  203 (214)
T ss_dssp             TCCCCCHHHHHHHHHHT-TCSEEEECBTTTTBSHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHHHHH
Confidence                0112233333333 23489999999999999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.38  E-value=2.3e-10  Score=95.70  Aligned_cols=78  Identities=13%  Similarity=0.040  Sum_probs=44.7

Q ss_pred             CceEEEEeCCCCCC---ccccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDK---IPRKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+....   ........+     ..+-++|+||+|+.+...            ...+...+..+.. ...++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  181 (204)
T 3th5_A          103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY  181 (204)
Confidence            66778888654321   111111111     345688999999975420            1111122222222 12378


Q ss_pred             EEEEecCCcCHHHHhcccc
Q 023913          253 IFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~~  271 (275)
                      +++|+++++|++++++.+.
T Consensus       182 ~~vSA~~g~gi~~l~~~l~  200 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAI  200 (204)
Confidence            9999999999999998654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.86  E-value=1.4e-09  Score=93.48  Aligned_cols=60  Identities=17%  Similarity=0.061  Sum_probs=44.7

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccCCCCChHHHHHhccccCchhHHH
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~  140 (275)
                      -.++|++++|+||||||||||+++|+|+++|  . |.|.+.+.++..    ..+..++|+||++..+
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f   74 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEF   74 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHH
Confidence            4567999999999999999999999999886  4 777777655432    1134689999986443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.86  E-value=4.9e-09  Score=92.60  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      ..+|++++|+|+||||||||++.+++.+..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            457999999999999999999999986543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.86  E-value=9.4e-10  Score=91.11  Aligned_cols=77  Identities=19%  Similarity=0.129  Sum_probs=47.4

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCcc--chhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVGWVIG  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~--~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g  262 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+.+.  .....+.+.+..+.++ ..+++++|+++++|
T Consensus        96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~g  174 (194)
T 3reg_A           96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-CVAYIEASSVAKIG  174 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-CSCEEECBTTTTBS
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-CCEEEEeecCCCCC
Confidence            67788888765422111   111111     2455889999999753  1123444555555543 23399999999999


Q ss_pred             HHHHhccc
Q 023913          263 IIFTLSIT  270 (275)
Q Consensus       263 ~~~l~~~~  270 (275)
                      ++++++.+
T Consensus       175 i~~l~~~l  182 (194)
T 3reg_A          175 LNEVFEKS  182 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.85  E-value=1.1e-08  Score=96.17  Aligned_cols=166  Identities=23%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH----hccccCchhHHHHHhcCCCccchHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM----RNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~----~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      ++.+++|+|++||||||++..|++.+.+. +++.+++.|+......+..+    ..++ +       .+........ . 
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv-~-------v~~~~~~~~p-~-  166 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV-P-------VLEVMDGESP-E-  166 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC-C-------EEECCTTCCH-H-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc-c-------EEecCCCCCH-H-
Confidence            78999999999999999999999999887 89999998875421111111    1110 0       0000000000 0 


Q ss_pred             HHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc--c-cCEEE
Q 023913          155 ISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q-ADLLV  222 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~-adiiv  222 (275)
                       ....+.++.+ ....+|++++++.|.        .+...+++++. ++.++++|+.++.+..... ..+.  . ...||
T Consensus       167 -~i~~~~l~~~-~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a-~~f~~~l~i~GVI  243 (425)
T 2ffh_A          167 -SIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA-RAFDEKVGVTGLV  243 (425)
T ss_dssp             -HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH-HHHHHHTCCCEEE
T ss_pred             -HHHHHHHHHH-HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH-HHHHhcCCceEEE
Confidence             1112244433 124678888885552        23334455555 7789999988775433221 1121  1 25689


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      +||.|.....+..+    ......  +.||.++.  .|+.++++
T Consensus       244 lTKlD~~~~~g~al----si~~~~--g~PI~flg--~Ge~~~dl  279 (425)
T 2ffh_A          244 LTKLDGDARGGAAL----SARHVT--GKPIYFAG--VSEKPEGL  279 (425)
T ss_dssp             EESGGGCSSCHHHH----HHHHHH--CCCEEEEE--CSSSGGGE
T ss_pred             EeCcCCcccHHHHH----HHHHHH--CCCEEEEe--CCCChhhc
Confidence            99999765532222    222222  56788876  36666544

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.85  E-value=7.5e-10  Score=111.02  Aligned_cols=99  Identities=14%  Similarity=-0.045  Sum_probs=63.8

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccC-CC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCC
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~  147 (275)
                      .+.+...+.  |++++|+||||||||||||+++|+.. ++ |.+.     +.      ....+++++|-.         .
T Consensus       567 ~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa------~~~~i~~v~~i~---------~  624 (765)
T 1ewq_A          567 FVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PA------EEAHLPLFDGIY---------T  624 (765)
T ss_dssp             CCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SS------SEEEECCCSEEE---------E
T ss_pred             eEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----eh------hccceeeHHHhh---------c
Confidence            344555555  99999999999999999999999863 44 6532     11      023466665420         0


Q ss_pred             ccchHHHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHh--c-CceEEEEe-C---CCCCCcc
Q 023913          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL--A-DYIIYIID-V---SGGDKIP  208 (275)
Q Consensus       148 ~~~~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral--~-~~~vlllD-~---t~g~d~~  208 (275)
                      ..+..+                  +.....|.|+.+++.+++++  + +|.++|+| |   |+++|..
T Consensus       625 ~~~~~d------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~  674 (765)
T 1ewq_A          625 RIGASD------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV  674 (765)
T ss_dssp             ECCC------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred             cCCHHH------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence            001000                  01112288999999999988  6 89999999 6   5666643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.85  E-value=4.6e-10  Score=94.02  Aligned_cols=75  Identities=21%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.......  .....+      ..+-++|+||+|+.... ...+.+.+.....  +.+++++|++++.|++
T Consensus        94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKEL--GIPFIESSAKNDDNVN  170 (213)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHHH--TCCEEECBTTTTBSSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            67888999775422111  110111      24458899999995331 2233344444443  3589999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       171 ~l~~~l  176 (213)
T 3cph_A          171 EIFFTL  176 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.85  E-value=4.8e-10  Score=105.60  Aligned_cols=72  Identities=17%  Similarity=0.090  Sum_probs=43.9

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..|+++|++.+.......    ......+-++|+||+|+.... ..   +.+. .++ ...+++++||++|.|++++++
T Consensus        84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~-~~---~~~~-~~l-g~~~~~~iSA~~g~gv~~L~~  157 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-AN---IYDF-YSL-GFGEPYPISGTHGLGLGDLLD  157 (436)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC------C---CCSS-GGG-SSCCCEECBTTTTBTHHHHHH
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccch-hh---HHHH-HHc-CCCCeEEEeCcCCCChHHHHH
Confidence            7888899988775432211    111245668899999987541 11   1111 122 123789999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       158 ~i  159 (436)
T 2hjg_A          158 AV  159 (436)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.85  E-value=9.4e-10  Score=89.57  Aligned_cols=77  Identities=14%  Similarity=0.009  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccchh----------hHHHHHHHHHhcCCCCCEEE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIGA----------DLAVMERDALRMRDGGPFIF  254 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~~----------~~~~~~~~i~~~~~~~~ii~  254 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+......          ..+...+..+.. ...++++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~  159 (182)
T 3bwd_D           81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI-GAPAYIE  159 (182)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc-CCCEEEE
Confidence            67888999765422110   111111     3455888999999765211          223333444443 2348999


Q ss_pred             EEecCCcCHHHHhccc
Q 023913          255 AQVGWVIGIIFTLSIT  270 (275)
Q Consensus       255 ~S~~~~~g~~~l~~~~  270 (275)
                      +|+++++|++++++.+
T Consensus       160 ~Sa~~~~gi~~l~~~l  175 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAA  175 (182)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            9999999999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.85  E-value=5.8e-09  Score=93.99  Aligned_cols=42  Identities=33%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      ..++++++|+|+|||||||+++.|++.+.+. ++|.+.+.|..
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            3568999999999999999999999999887 88999988864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.84  E-value=9e-10  Score=92.51  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=44.6

Q ss_pred             CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|+++|.+......   ......+     ..+-++|+||+|+.+...            ...+...+..+.+ ...++
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  176 (207)
T 2fv8_A           98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI-QAYDY  176 (207)
T ss_dssp             CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc-CCCEE
Confidence            6678888876532111   1111111     345588999999976510            0111222222222 22379


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|++++.|++++++.+
T Consensus       177 ~~~SA~~g~gi~el~~~l  194 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETA  194 (207)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHH
Confidence            999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.84  E-value=6.5e-10  Score=102.23  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             cccCC--CcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           76 NFNER--AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        76 ~~~~~--geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      ....+  ++.++|+|+||||||||+++|+|+++|+
T Consensus       163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34456  9999999999999999999999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.83  E-value=1.1e-09  Score=103.61  Aligned_cols=142  Identities=17%  Similarity=0.111  Sum_probs=73.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      -..++|+|++|+|||||+|.|+|.     +..+....++...+    +..+.                            
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~-----~~~~v~~~~g~t~~----~~~~~----------------------------   65 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGE-----RISIVEDTPGVTRD----RIYSS----------------------------   65 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEE-----EEC---------------CEEEE----------------------------
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC-----CCcccCCCCCccee----EEEEE----------------------------
Confidence            458999999999999999999985     22222111111000    00000                            


Q ss_pred             HHHHhhcccccccccccChh--------HHHHHHHHHHh---cCceEEEEeCCCCCCcccc-c---cccccccCEEEEec
Q 023913          161 PLEELSNLFKADLLLCESGG--------DNLAANFSREL---ADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINK  225 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G--------~~q~~~laral---~~~~vlllD~t~g~d~~~~-~---~~~i~~adiivlNK  225 (275)
                           .........+.+++|        +.+....+...   ++..|+++|...+...... .   ......+-++|+||
T Consensus        66 -----~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK  140 (456)
T 4dcu_A           66 -----AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNK  140 (456)
T ss_dssp             -----CTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred             -----EEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEEC
Confidence                 001122334445555        44443333332   3788888997766543221 1   11124566889999


Q ss_pred             CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +|+....    +.+.+. ..+ ...+++++||+++.|++++++.+
T Consensus       141 ~D~~~~~----~~~~e~-~~l-g~~~~~~iSA~~g~gv~~L~~~i  179 (456)
T 4dcu_A          141 LDNTEMR----ANIYDF-YSL-GFGEPYPISGTHGLGLGDLLDAV  179 (456)
T ss_dssp             C-------------CCS-GGG-SSSSEEECCTTTCTTHHHHHHHH
T ss_pred             ccchhhh----hhHHHH-HHc-CCCceEEeecccccchHHHHHHH
Confidence            9987541    111111 112 23467899999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.83  E-value=1.6e-09  Score=102.03  Aligned_cols=75  Identities=17%  Similarity=0.144  Sum_probs=46.1

Q ss_pred             cCceEEEEeCCCCCCcccc-cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          192 ADYIIYIIDVSGGDKIPRK-GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~-~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      ++..++++|.+.+...... ....   ...+-++|+||+|+...  .. ..+...+.++ ...+++++||++|.|+++++
T Consensus        82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~--~~-~~~~~~~~~l-g~~~~~~iSA~~g~gv~~L~  157 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE-REVKPELYSL-GFGEPIPVSAEHNINLDTML  157 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH-HHTHHHHGGG-SSCSCEECBTTTTBSHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc--cH-HHHHHHHHhc-CCCCEEEEeccCCCCHHHHH
Confidence            3788999998776532211 1111   24556889999998532  11 1221122232 23368999999999999998


Q ss_pred             ccc
Q 023913          268 SIT  270 (275)
Q Consensus       268 ~~~  270 (275)
                      +.+
T Consensus       158 ~~i  160 (439)
T 1mky_A          158 ETI  160 (439)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.83  E-value=2.6e-09  Score=108.81  Aligned_cols=106  Identities=12%  Similarity=0.048  Sum_probs=59.7

Q ss_pred             Cccccccc-cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCc
Q 023913           70 PPILSRNF-NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (275)
Q Consensus        70 ~~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~  148 (275)
                      .+.+...+ ..+|++++|+|||||||||||+++++..-.                   .+...++|....   ..+....
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------aq~g~~vpa~~~---~i~~~d~  718 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------AQIGSYVPAEEA---TIGIVDG  718 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------HHHTCCBSSSEE---EEECCSE
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------hhcCccccchhh---hhhHHHH
Confidence            34444444 567999999999999999999999764210                   001112222110   0000000


Q ss_pred             cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEe-CCCCCCccc
Q 023913          149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       149 ~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD-~t~g~d~~~  209 (275)
                                  .+..++........+.. |+||++++.++++..+|.++||| |++|+|...
T Consensus       719 ------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~  769 (918)
T 3thx_B          719 ------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHD  769 (918)
T ss_dssp             ------------EEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHH
T ss_pred             ------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Confidence                        00001111111111222 78999999999885599999999 899998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.83  E-value=1.5e-10  Score=102.43  Aligned_cols=73  Identities=16%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             CceEEEEeCCCCCCccc--cccccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..|+++|+++......  .....+..+-++|+||+|+.+...  ...+.+.+.+     +.+++++|+++|+|++++++
T Consensus        87 d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~~i~~SA~~g~gi~el~~  161 (274)
T 3i8s_A           87 DLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARL-----GCPVIPLVSTRGRGIEALKL  161 (274)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHH-----TSCEEECCCGGGHHHHHHHH
T ss_pred             CEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHH
Confidence            67788899775321110  011123567799999999875421  2233343332     37899999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       162 ~i  163 (274)
T 3i8s_A          162 AI  163 (274)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.83  E-value=1.4e-09  Score=112.12  Aligned_cols=93  Identities=17%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhcc-ccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIRAVETGGCPHAAIREDISINL  159 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
                      |++++|+|||||||||||+++ |++.+                   ...+| ||||+..   .++......         
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~---~l~v~d~I~---------  836 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC---RLTPIDRVF---------  836 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE---EECCCSBEE---------
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC---CCCHHHHHH---------
Confidence            899999999999999999999 98641                   24566 8888642   111111110         


Q ss_pred             HHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          160 GPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       160 ~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                         ..++.......-... ++++. .++++++++ +|.++|+| |++|.|...
T Consensus       837 ---~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~d  885 (1022)
T 2o8b_B          837 ---TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFD  885 (1022)
T ss_dssp             ---EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHH
T ss_pred             ---HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHH
Confidence               000000000001111 44544 478888888 89999999 888887543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.83  E-value=1.5e-09  Score=90.76  Aligned_cols=59  Identities=22%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~  140 (275)
                      .+|++++|+||||||||||+++|+++++   .+.+.+.+............++|++|++..+
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRF   63 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence            4699999999999999999999999864   4444443332222112245688999987543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=89.96  Aligned_cols=76  Identities=16%  Similarity=-0.022  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCCCccc--ccccc---------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEe-cCC
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG---------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV-GWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~---------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~-~~~  260 (275)
                      +..++++|.+.......  .....         -..+-++|.||+|+........+.+.+..+++  +.+++++|+ +++
T Consensus        93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~g  170 (187)
T 3c5c_A           93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--GCLFFEVSACLDF  170 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECCSSSCS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--CCcEEEEeecCcc
Confidence            67788889764321110  00011         13445888999999754223334455555555  368999999 899


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       171 ~gv~~lf~~l  180 (187)
T 3c5c_A          171 EHVQHVFHEA  180 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             ccHHHHHHHH
Confidence            9999998754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.82  E-value=1.2e-09  Score=89.22  Aligned_cols=77  Identities=13%  Similarity=0.035  Sum_probs=46.0

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+.+...            ...+...+..+.. ...++
T Consensus        78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  156 (186)
T 1mh1_A           78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY  156 (186)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence            67788889765421111   111111     345688999999976410            0112222333333 23489


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|++++.|++++++.+
T Consensus       157 ~~~Sa~~g~gi~~l~~~l  174 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEA  174 (186)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEecCCCccCHHHHHHHH
Confidence            999999999999998754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.82  E-value=8.2e-10  Score=105.85  Aligned_cols=181  Identities=15%  Similarity=0.165  Sum_probs=95.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      +..+++|+|++|||||||++.|+..+... .++.++..|+......+..+..+       .......+...+........
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~-------~~~~i~v~~~~~~~dp~~i~  172 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA-------TKARIPFYGSYTEMDPVIIA  172 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHH-------HHHTCCEEECCCCSCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHh-------hccCceEEccCCCCCHHHHH
Confidence            46689999999999999999999766544 47888888875422211111000       00000000000000001111


Q ss_pred             HHHHHHhhcccccccccccChhHHH--------HHHHHHHhc-CceEEEEeCCCCCCcccccccccc--cc-CEEEEecC
Q 023913          159 LGPLEELSNLFKADLLLCESGGDNL--------AANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINKT  226 (275)
Q Consensus       159 ~~~L~~l~~~~~~d~~~~eS~G~~q--------~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~a-diivlNK~  226 (275)
                      .+.+..+ ....++.+++++.|..+        ...+++++. +..++++|++.+.+.... ...+.  .+ +.||+||+
T Consensus       173 ~~al~~~-~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-a~~~~~~~~i~gvVlNK~  250 (504)
T 2j37_W          173 SEGVEKF-KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-AKAFKDKVDVASVIVTKL  250 (504)
T ss_dssp             HHHHHHH-HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-HHHHHHHHCCCCEEEECT
T ss_pred             HHHHHHH-HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-HHHHHhhcCceEEEEeCC
Confidence            2244443 22467888999666431        112233333 677889999887653211 11222  33 68999999


Q ss_pred             CCCccchhhHHHHHHHH-------------HhcCCCCCEEEEEecCCcC-HHHHhccc
Q 023913          227 DLASAIGADLAVMERDA-------------LRMRDGGPFIFAQVGWVIG-IIFTLSIT  270 (275)
Q Consensus       227 Dl~~~~~~~~~~~~~~i-------------~~~~~~~~ii~~S~~~~~g-~~~l~~~~  270 (275)
                      |........++ +.+.+             ..+.+..+++++|+..|.| +++|++..
T Consensus       251 D~~~~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i  307 (504)
T 2j37_W          251 DGHAKGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKV  307 (504)
T ss_dssp             TSCCCCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHH
T ss_pred             ccccchHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHH
Confidence            99865333333 22111             1223344555667777877 66665543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.82  E-value=2.2e-10  Score=93.74  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~  240 (275)
                      ...+.+++|+..-..+.....   +..++++|.+.......  .....+      ..+-++|+||+|+........+.++
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  137 (183)
T 2fu5_C           58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE  137 (183)
T ss_dssp             EEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred             EEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHH
Confidence            344455666543323322222   67888999776422111  010111      2355889999999764222334454


Q ss_pred             HHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          241 RDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       241 ~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +..+..  +.+++++|++++.|+++++..+
T Consensus       138 ~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C          138 KLALDY--GIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             HHHHHH--TCEEEECCC---CCHHHHHHHH
T ss_pred             HHHHHc--CCeEEEEeCCCCCCHHHHHHHH
Confidence            444444  3689999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.82  E-value=4e-10  Score=95.86  Aligned_cols=76  Identities=14%  Similarity=-0.072  Sum_probs=45.4

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-+||+||+|+........+.+.+..+..  +.+++++|+++++|++
T Consensus        87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQEN--QLLFTETSALNSENVD  164 (223)
T ss_dssp             CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHT--TCEEEECCCC-CCCHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            56788888765432111  000111      3345788999999764222334444444443  4789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       165 ~l~~~l  170 (223)
T 3cpj_B          165 KAFEEL  170 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.80  E-value=8.5e-10  Score=90.57  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=44.1

Q ss_pred             CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|+++........  ......+-++|+||+|+.....  ...+.+.   +.+  +.+++++|++++.|++++++
T Consensus        87 ~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~--~~~~~~~Sa~~~~~v~~l~~  161 (188)
T 2wjg_A           87 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KIL--GVKVVPLSAAKKMGIEELKK  161 (188)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHH--TSCEEECBGGGTBSHHHHHH
T ss_pred             CEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH---HHh--CCCeEEEEecCCCCHHHHHH
Confidence            5567778876432111100  0112345688999999864311  1223332   223  36899999999999999987


Q ss_pred             ccc
Q 023913          269 ITH  271 (275)
Q Consensus       269 ~~~  271 (275)
                      .+.
T Consensus       162 ~i~  164 (188)
T 2wjg_A          162 AIS  164 (188)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.80  E-value=7.9e-09  Score=97.48  Aligned_cols=98  Identities=10%  Similarity=0.002  Sum_probs=59.0

Q ss_pred             cccccccChhHHHHHHHHHH-h--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccc--h
Q 023913          171 ADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAI--G  233 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~lara-l--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~--~  233 (275)
                      ....+.+++|..+-...... +  ++..|+++|++.+..       .+...    ...+..+ -++++||+|+....  .
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~  174 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  174 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence            45667778897654433322 2  378999999887742       11111    1123445 46789999996421  1


Q ss_pred             hhHHH----HHHHHHhcC----CCCCEEEEEecCCcCHHHHhc
Q 023913          234 ADLAV----MERDALRMR----DGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       234 ~~~~~----~~~~i~~~~----~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ...+.    +.+.++++.    ...+++++||++|.|++++.+
T Consensus       175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            22223    333333332    256899999999999998655

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.80  E-value=2.4e-10  Score=102.73  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=39.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHHhccccCchh
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      ..|++++|+|+||||||||+|+|+ +++|+ |.|.+   .+.+..........+.+||++|.+
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p  224 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP  224 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence            458999999999999999999999 98888 99998   666554322111113578887765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.79  E-value=2.6e-09  Score=97.05  Aligned_cols=98  Identities=14%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             ccccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cccc---c---ccccCEEEEecCCCCccchhhHHHH
Q 023913          172 DLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGGP---G---ITQADLLVINKTDLASAIGADLAVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~~---~---i~~adiivlNK~Dl~~~~~~~~~~~  239 (275)
                      ...+.+++|+..-..+....+   +..|+++|.+.......   ....   .   -..+-+||+||+|+.+.  ...+++
T Consensus       210 ~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~--~~~~~i  287 (329)
T 3o47_A          210 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEI  287 (329)
T ss_dssp             EEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHH
T ss_pred             EEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc--cCHHHH
Confidence            344555666443222222222   67888999865432111   1101   1   13345888999999876  344555


Q ss_pred             HHHHHhcC---CCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ...+....   ...+++++|+++++|++++++.+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~  322 (329)
T 3o47_A          288 TDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS  322 (329)
T ss_dssp             HHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             HHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence            55443322   346799999999999999998643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.79  E-value=1.7e-09  Score=91.58  Aligned_cols=41  Identities=24%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      ..+|++++|+||||||||||++.|++.+.+. +++.+++.+.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            4679999999999999999999999887765 8888887654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.79  E-value=5e-09  Score=96.31  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEe
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT  115 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~  115 (275)
                      ...++++++|+|||||||||||++|+|+++++ + .|....
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            45678899999999999999999999999875 4 444443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.79  E-value=2.3e-09  Score=87.80  Aligned_cols=52  Identities=15%  Similarity=0.056  Sum_probs=35.9

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+-++|+||+|+....   .+.+++..++++-     ..+++++|+++++|++++++.+
T Consensus       122 ~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  178 (190)
T 2cxx_A          122 DIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI  178 (190)
T ss_dssp             TCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred             CCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHH
Confidence            45668999999998763   2223333333332     1358999999999999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.78  E-value=2.2e-09  Score=89.70  Aligned_cols=77  Identities=18%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+......   ......+     ..+-++|+||+|+.+...            ...+...+..+.+ ...++
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  176 (201)
T 2gco_A           98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI-SAFGY  176 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC-CCcEE
Confidence            6778888876532111   1111111     345688999999986521            1112223333333 23379


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|+++++|++++++.+
T Consensus       177 ~~~SA~~g~gi~~l~~~i  194 (201)
T 2gco_A          177 LECSAKTKEGVREVFEMA  194 (201)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHH
Confidence            999999999999998754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.78  E-value=2.4e-10  Score=101.27  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             CceEEEEeCCCCCCcccccccc---ccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          193 DYIIYIIDVSGGDKIPRKGGPG---ITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~~~~---i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      +..++++|+++...... ...+   ...+-++|+||+|+.....  .+.+.+.+.+     +.+++++|+++++|+++++
T Consensus        82 d~vi~V~D~t~~e~~~~-~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-----g~~vi~~SA~~g~gi~el~  155 (272)
T 3b1v_A           82 DSILNVVDATNLERNLY-LTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL-----GVPVVATSALKQTGVDQVV  155 (272)
T ss_dssp             SEEEEEEEGGGHHHHHH-HHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-----TSCEEECBTTTTBSHHHHH
T ss_pred             CEEEEEecCCchHhHHH-HHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-----CCCEEEEEccCCCCHHHHH
Confidence            56778888765321111 1111   2466789999999864311  2233343332     4689999999999999998


Q ss_pred             ccc
Q 023913          268 SIT  270 (275)
Q Consensus       268 ~~~  270 (275)
                      +.+
T Consensus       156 ~~i  158 (272)
T 3b1v_A          156 KKA  158 (272)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.78  E-value=1.1e-09  Score=96.19  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=46.9

Q ss_pred             CceEEEEeCCCCCCccccc--cccccccCEEEEecCCCCccch--hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~--~~~i~~adiivlNK~Dl~~~~~--~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..++++|+++........  ......+-++|+||+|+.....  .+.+.+.+.   +  +.+++++|++++.|++++++
T Consensus        85 d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~---l--g~~vi~~SA~~g~gi~el~~  159 (258)
T 3a1s_A           85 DLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKH---L--GIPVVFTSSVTGEGLEELKE  159 (258)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHH---H--CSCEEECCTTTCTTHHHHHH
T ss_pred             CEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHH---c--CCCEEEEEeeCCcCHHHHHH
Confidence            6778899987643211110  0112466789999999865421  123333333   2  37899999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       160 ~i  161 (258)
T 3a1s_A          160 KI  161 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.78  E-value=3.5e-09  Score=87.52  Aligned_cols=77  Identities=12%  Similarity=0.043  Sum_probs=47.1

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+....            ....+...+..+.++ ..++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  169 (194)
T 2atx_A           91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-ACCY  169 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-CSCE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC-CcEE
Confidence            67788889765421110   111111     34558899999997641            012233444444442 2479


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|+++++|++++++.+
T Consensus       170 ~~~Sa~~g~gi~~l~~~l  187 (194)
T 2atx_A          170 VECSALTQKGLKTVFDEA  187 (194)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHH
Confidence            999999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.78  E-value=8.6e-09  Score=92.44  Aligned_cols=169  Identities=18%  Similarity=0.174  Sum_probs=96.9

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH-H---HHhcc--ccCchhHHHHHhcCCCccc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNG--ALPEERIRAVETGGCPHAA  150 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~-~---~~~ig--~v~q~~~~~~~~~~~~~~~  150 (275)
                      ..++.+++++|++|+||||++..|++.+.+. +++.+...|+......+ +   .+..+  +++.          .....
T Consensus        95 ~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~----------~~~~~  164 (297)
T 1j8m_F           95 DKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE----------PGEKD  164 (297)
T ss_dssp             SSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC----------TTCCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec----------CCCCC
Confidence            3448999999999999999999999998877 88999998875432111 1   11111  1110          00001


Q ss_pred             hHHHHHHHHHHHHHhhcccccccccccChhHHH-----HHH-----HHHHhc-CceEEEEeCCCCCCcccccccccc--c
Q 023913          151 IREDISINLGPLEELSNLFKADLLLCESGGDNL-----AAN-----FSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q  217 (275)
Q Consensus       151 ~~~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q-----~~~-----laral~-~~~vlllD~t~g~d~~~~~~~~i~--~  217 (275)
                       ..  ....+.++.+ ....+|+++++++|..+     .+.     +.+++. +..++++|+..+.+..... ..+.  .
T Consensus       165 -p~--~~~~~~l~~~-~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~-~~~~~~~  239 (297)
T 1j8m_F          165 -VV--GIAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLA-SKFNQAS  239 (297)
T ss_dssp             -HH--HHHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH-HHHHHTC
T ss_pred             -HH--HHHHHHHHHH-HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHH-HHHHhhC
Confidence             11  1112344443 22467889999665433     111     123333 6788899987664432211 1121  2


Q ss_pred             c-CEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          218 A-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       218 a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      . ..+|+||+|.....    ..+.......  +.||.+++  .|++++++...
T Consensus       240 ~i~gvVlnk~D~~~~~----g~~~~~~~~~--~~pi~~i~--~Ge~v~dl~~f  284 (297)
T 1j8m_F          240 KIGTIIITKMDGTAKG----GGALSAVAAT--GATIKFIG--TGEKIDELEVF  284 (297)
T ss_dssp             TTEEEEEECGGGCTTH----HHHHHHHHTT--TCCEEEEE--CSSSTTCEEEC
T ss_pred             CCCEEEEeCCCCCcch----HHHHHHHHHH--CcCEEEEe--CCCChhhcccC
Confidence            3 56899999976542    2222333333  57888887  58888766543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.77  E-value=1.5e-09  Score=104.46  Aligned_cols=71  Identities=10%  Similarity=-0.093  Sum_probs=53.7

Q ss_pred             CCCCcccccc-ccCCCcEEEEEcCCcchHHHHHHH--HHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH
Q 023913           67 RRAPPILSRN-FNERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (275)
Q Consensus        67 ~~~~~~~~~~-~~~~geiv~IiG~nGaGKTTLl~~--L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~  138 (275)
                      +.+++.+.++ -..+|++++|+|+||||||||+++  +.|+++|+ |.+.+.+.+. ........+.+||++|++.
T Consensus        24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~   98 (525)
T 1tf7_A           24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV   98 (525)
T ss_dssp             CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred             CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence            4455555555 567899999999999999999999  67998877 9898887662 1112334567999999864

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.77  E-value=2.8e-09  Score=91.21  Aligned_cols=94  Identities=17%  Similarity=0.094  Sum_probs=56.1

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---cccccc--c---ccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PRKGGP--G---ITQADLLVINKTDLASAIGADLAVMERDA  243 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~~~~~--~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i  243 (275)
                      +.++.|+.+--.+.....   +..+++.|.+.....   ......  .   -..+-+||.||+|+.+......++.++..
T Consensus        66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a  145 (216)
T 4dkx_A           66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA  145 (216)
T ss_dssp             EECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             EEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence            344666543233333332   677888887653211   111100  0   12344778999999765333455565666


Q ss_pred             HhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          244 LRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       244 ~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ++++  ++++++||++|.|+++++..+
T Consensus       146 ~~~~--~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A          146 KELN--VMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             HHHT--CEEEEEBTTTTBSHHHHHHHH
T ss_pred             HHhC--CeeEEEeCCCCcCHHHHHHHH
Confidence            6653  679999999999999998754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.76  E-value=1.5e-09  Score=103.50  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             ccccccccChhHHHHHHHHHH-h--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccchh
Q 023913          170 KADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAIGA  234 (275)
Q Consensus       170 ~~d~~~~eS~G~~q~~~lara-l--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~~~  234 (275)
                      .....+.++.|+.+-...... +  ++..|+++|++.+.-       .+...    ...+... -++|+||+|+.+....
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence            345667778887654333322 2  278999999887631       11111    1112333 4678999999863223


Q ss_pred             hHHHHHHHHHh----cC---CCCCEEEEEecCCcCHHHH
Q 023913          235 DLAVMERDALR----MR---DGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       235 ~~~~~~~~i~~----~~---~~~~ii~~S~~~~~g~~~l  266 (275)
                      ..+++.+.+..    +.   ...+++++||++|.|++++
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            33444433332    22   1578999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.76  E-value=8.4e-09  Score=83.77  Aligned_cols=78  Identities=10%  Similarity=0.029  Sum_probs=47.6

Q ss_pred             cCceEEEEeCCCCCCcc--ccc---ccc------ccccCEEEEecCCCCc--cchhhHHHHHHHHHhcCCCCCEEEEEec
Q 023913          192 ADYIIYIIDVSGGDKIP--RKG---GPG------ITQADLLVINKTDLAS--AIGADLAVMERDALRMRDGGPFIFAQVG  258 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~--~~~---~~~------i~~adiivlNK~Dl~~--~~~~~~~~~~~~i~~~~~~~~ii~~S~~  258 (275)
                      ++..++++|.+......  ...   ...      -..+-++|.||+|+..  ......+.+.+..+.. ...+++++|++
T Consensus        73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~  151 (178)
T 2iwr_A           73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM-KRCSYYETXAT  151 (178)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH-SSEEEEEEBTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh-cCCeEEEEecc
Confidence            37888899976542111  010   001      1235578899999942  2112334444444443 35689999999


Q ss_pred             CCcCHHHHhccc
Q 023913          259 WVIGIIFTLSIT  270 (275)
Q Consensus       259 ~~~g~~~l~~~~  270 (275)
                      +++|++++++.+
T Consensus       152 ~~~~i~~lf~~l  163 (178)
T 2iwr_A          152 YGLNVDRVFQEV  163 (178)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.75  E-value=6.6e-09  Score=85.52  Aligned_cols=23  Identities=39%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999863

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.75  E-value=1.7e-08  Score=85.50  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=26.9

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      ..+|++++|+||||||||||+++|+|.+.+
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            467999999999999999999999996554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.74  E-value=3.3e-09  Score=89.85  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCcc------------chhhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASA------------IGADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~------------~~~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|+++|.+.......   .....+     ..+-+||.||+|+.+.            .....+...+..+.++ ..++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  178 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG-AEIY  178 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-CCEE
Confidence            67888899876432111   111111     3456888999999753            1122344444444442 2389


Q ss_pred             EEEEecCCcC-HHHHhccc
Q 023913          253 IFAQVGWVIG-IIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g-~~~l~~~~  270 (275)
                      +++||+++.| ++++++.+
T Consensus       179 ~e~SA~~g~g~v~~lf~~l  197 (214)
T 3q3j_B          179 LEGSAFTSEKSIHSIFRTA  197 (214)
T ss_dssp             EECCTTTCHHHHHHHHHHH
T ss_pred             EEeccCCCcccHHHHHHHH
Confidence            9999999998 99998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.73  E-value=2.2e-09  Score=96.33  Aligned_cols=59  Identities=15%  Similarity=0.103  Sum_probs=38.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHHhccccCchh
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      ..|++++|+||||||||||||+|+|+.+|+ |.|.+   .+.++.........+.+||++|.+
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p  229 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP  229 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence            468999999999999999999999999998 99988   666654322111123588888875

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.73  E-value=1.2e-08  Score=104.09  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=26.1

Q ss_pred             ccccccc-cCCCcEEEEEcCCcchHHHHHHHHH
Q 023913           71 PILSRNF-NERAFTVGIGGPVGTGKTALMLALC  102 (275)
Q Consensus        71 ~~~~~~~-~~~geiv~IiG~nGaGKTTLl~~L~  102 (275)
                      +.+...+ ..+|++++|+||||||||||||+++
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4444444 4569999999999999999999993

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.72  E-value=2.8e-09  Score=87.56  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+......   ......+     ..+-++|.||+|+....            ....+...+..++++ ..++
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  158 (184)
T 1m7b_A           80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATY  158 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-CcEE
Confidence            5678888876532111   1111111     24557889999997431            012233444444443 4689


Q ss_pred             EEEEec-CCcCHHHHhccc
Q 023913          253 IFAQVG-WVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~-~~~g~~~l~~~~  270 (275)
                      +++|++ ++.|+++++..+
T Consensus       159 ~e~Sa~~~~~gi~~l~~~i  177 (184)
T 1m7b_A          159 IECSALQSENSVRDIFHVA  177 (184)
T ss_dssp             EECBTTTBHHHHHHHHHHH
T ss_pred             EEeeecCCCcCHHHHHHHH
Confidence            999999 689999998754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.72  E-value=2.2e-09  Score=88.32  Aligned_cols=76  Identities=18%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCCCccc---cccc------cccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGP------GITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|++.......   ....      .-..+-++|+||+|+.+.  ...+++.+.+..  . ....+++++|++++
T Consensus        91 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  168 (189)
T 2x77_A           91 DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQLGVSSIMNRTWTIVKSSSKTG  168 (189)
T ss_dssp             CEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhccCCceEEEEccCCCc
Confidence            67888999876532211   0100      113456889999999865  333444444321  1 12457999999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++.+
T Consensus       169 ~gi~~l~~~l  178 (189)
T 2x77_A          169 DGLVEGMDWL  178 (189)
T ss_dssp             TTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.72  E-value=3.5e-09  Score=88.02  Aligned_cols=77  Identities=14%  Similarity=0.099  Sum_probs=46.4

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|+++|++.......   .....+     ..+-++|+||+|+....            ....+......+.+ ...++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  171 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI-KAASY  171 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence            67788889765422111   111111     34558889999997531            01223333333333 23489


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|+++++|++++++.+
T Consensus       172 ~~~Sa~~g~gi~~l~~~l  189 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAA  189 (201)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHH
Confidence            999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.71  E-value=2.5e-09  Score=89.72  Aligned_cols=77  Identities=14%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccchh--------hHHHHHHHHHhcCCCCCEEEEE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIGA--------DLAVMERDALRMRDGGPFIFAQ  256 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~~--------~~~~~~~~i~~~~~~~~ii~~S  256 (275)
                      +..|+++|.+.......   .....+     ..+-+||+||+|+......        ..+.+.+..+.++ ..+++++|
T Consensus        82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~S  160 (212)
T 2j0v_A           82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-AAAYIECS  160 (212)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-CSEEEECC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-CceEEEcc
Confidence            67788889765421111   111111     3456889999999765211        2344444444443 35899999


Q ss_pred             ecCCcCHHHHhccc
Q 023913          257 VGWVIGIIFTLSIT  270 (275)
Q Consensus       257 ~~~~~g~~~l~~~~  270 (275)
                      +++++|++++++.+
T Consensus       161 a~~g~gi~~l~~~l  174 (212)
T 2j0v_A          161 SKTQQNVKAVFDTA  174 (212)
T ss_dssp             TTTCTTHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH
Confidence            99999999998754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.71  E-value=9.2e-08  Score=85.64  Aligned_cols=166  Identities=13%  Similarity=0.085  Sum_probs=90.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCcc--chHH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIRE  153 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~--~~~~  153 (275)
                      ..++++++|+|+|||||||+++.|++.+.++ | +|.+...|.......+..+..          ....+.+..  ....
T Consensus       102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~----------~~~~gl~~~~~~~~~  171 (296)
T 2px0_A          102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTY----------AELLQAPLEVCYTKE  171 (296)
T ss_dssp             CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHH----------HTTTTCCCCBCSSHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHH----------HHhcCCCeEecCCHH
Confidence            4568999999999999999999999999874 7 899998887532221111100          001111110  0011


Q ss_pred             HHHHHHHHHHHhhcccccccccccChhHH-----HHHHHHHHhc----CceEEEEeCCCCCCcccccccccc--ccCEEE
Q 023913          154 DISINLGPLEELSNLFKADLLLCESGGDN-----LAANFSRELA----DYIIYIIDVSGGDKIPRKGGPGIT--QADLLV  222 (275)
Q Consensus       154 ~~~~~~~~L~~l~~~~~~d~~~~eS~G~~-----q~~~laral~----~~~vlllD~t~g~d~~~~~~~~i~--~adiiv  222 (275)
                      .+   ..++..+   ..++.+++++.|.-     ....+...+.    +..++++|.+.+.+........+.  ...-+|
T Consensus       172 ~l---~~al~~~---~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV  245 (296)
T 2px0_A          172 EF---QQAKELF---SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI  245 (296)
T ss_dssp             HH---HHHHHHG---GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred             HH---HHHHHHh---cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence            11   2234332   45788888855532     1222222222    235888998766322111111121  235688


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH-HHHh
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI-IFTL  267 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~-~~l~  267 (275)
                      +||.|.....+    .+...+...  +.||.+++  .|+++ +++.
T Consensus       246 ltk~D~~~~~g----~~~~~~~~~--~~pi~~i~--~ge~vp~dl~  283 (296)
T 2px0_A          246 FTKIDETTSLG----SVFNILAES--KIGVGFMT--NGQNVPEDIQ  283 (296)
T ss_dssp             EECTTTCSCCH----HHHHHHHTC--SCCCSEEC--CSSCTTTSCB
T ss_pred             EeCCCcccchh----HHHHHHHHH--CcCEEEEE--CCCCChHHHh
Confidence            99999875532    233344443  46666655  46666 4443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.70  E-value=2.4e-08  Score=93.15  Aligned_cols=101  Identities=15%  Similarity=0.071  Sum_probs=57.1

Q ss_pred             cccccccChhHHHHHHH-HHHhc--CceEEEEeCCCCC-Cccccc----ccccccc-CEEEEecCCCCccch--hhHHHH
Q 023913          171 ADLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGGD-KIPRKG----GPGITQA-DLLVINKTDLASAIG--ADLAVM  239 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g~-d~~~~~----~~~i~~a-diivlNK~Dl~~~~~--~~~~~~  239 (275)
                      ....+.+++|...-... .+.+.  +..|+++|++.+. ..+...    ...+... -++++||+|+.+...  ...+++
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i  160 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQI  160 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence            34556678886543222 12222  7889999988764 222211    1122332 368899999986521  234556


Q ss_pred             HHHHHhcC-CCCCEEEEEecCCcCHHHHhcccc
Q 023913          240 ERDALRMR-DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       240 ~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      .+.++... ...+++++|+++++|++++++.+.
T Consensus       161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~  193 (408)
T 1s0u_A          161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ  193 (408)
T ss_dssp             HHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred             HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            66665432 367899999999999999987653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.69  E-value=2.5e-08  Score=90.75  Aligned_cols=37  Identities=30%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             ccccc-ChhHHHH------HHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          173 LLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       173 ~~~~e-S~G~~q~------~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ..+.+ |+||+|+      +++|++++ +|+++|+| |++++|...
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~  289 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER  289 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH
Confidence            34455 9999995      55666666 89999999 899998754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.69  E-value=1.5e-09  Score=99.93  Aligned_cols=63  Identities=17%  Similarity=0.063  Sum_probs=45.7

Q ss_pred             cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccC-ch
Q 023913           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EE  136 (275)
Q Consensus        72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~-q~  136 (275)
                      .+.++...+|++++|+||||||||||+++|+++++|+ |.|.+.+..  .......++.+++++ |+
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~~~v~~v~~q~  230 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHPNHVHLFYPSE  230 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCSSEEEEECC--
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccCCEEEEeecCc
Confidence            3444556789999999999999999999999999998 888887532  222212334577877 54

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.68  E-value=6.7e-09  Score=98.91  Aligned_cols=50  Identities=14%  Similarity=0.044  Sum_probs=43.2

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      ++.+.++...+ ++++|+|||||||||||++|+|+++|+ |+|.+.+.++..
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG   69 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            45566666677 999999999999999999999999998 999999887754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.68  E-value=2e-08  Score=92.84  Aligned_cols=55  Identities=15%  Similarity=0.395  Sum_probs=42.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccccCch
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (275)
                      ..+|++++|+||||||||||+++|+++++|+  |+|.+++.++. .   .+...+++++|.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~  189 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQR  189 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEE
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEee
Confidence            5679999999999999999999999999874  88877776543 1   123456777763

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.68  E-value=1.7e-08  Score=92.48  Aligned_cols=87  Identities=15%  Similarity=0.047  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHhc-Cc--eEEEEeCCCCCCcccc---cc---ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCC
Q 023913          180 GDNLAANFSRELA-DY--IIYIIDVSGGDKIPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG  250 (275)
Q Consensus       180 G~~q~~~laral~-~~--~vlllD~t~g~d~~~~---~~---~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~  250 (275)
                      ...+...+++..+ ++  .|+++|+++.......   ..   .....+-++|+||+|+++......+.+...  ...-+.
T Consensus       158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~--~~~~~~  235 (360)
T 3t34_A          158 IVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR--SFKLKY  235 (360)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS--SSCCSS
T ss_pred             HHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc--cccccC
Confidence            3455677777776 55  4555555432211110   11   112345688999999986532222222221  222346


Q ss_pred             CEEEEEecCCcCHHHHhc
Q 023913          251 PFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       251 ~ii~~S~~~~~g~~~l~~  268 (275)
                      +.+.++++++.++++.+.
T Consensus       236 ~~~~v~~~s~~~i~~~~~  253 (360)
T 3t34_A          236 PWVGVVNRSQADINKNVD  253 (360)
T ss_dssp             CCEEECCCCHHHHHTTCC
T ss_pred             CeEEEEECChHHhccCCC
Confidence            788899998888776543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.68  E-value=4.5e-09  Score=88.54  Aligned_cols=77  Identities=17%  Similarity=0.141  Sum_probs=45.6

Q ss_pred             CceEEEEeCCCCCCcc---ccccccc-----cccCEEEEecCCCCccc------------hhhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~~~~i-----~~adiivlNK~Dl~~~~------------~~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|+++|.+......   ......+     ..+-++|.||+|+....            ....++..+..++++ ..++
T Consensus       101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  179 (205)
T 1gwn_A          101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATY  179 (205)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-CCEE
Confidence            5678888876532111   1111111     23457889999997531            012233444444443 3579


Q ss_pred             EEEEec-CCcCHHHHhccc
Q 023913          253 IFAQVG-WVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~-~~~g~~~l~~~~  270 (275)
                      +++|++ ++.|+++++..+
T Consensus       180 ~e~SAk~~~~gv~~lf~~l  198 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVA  198 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHH
T ss_pred             EEeeeccCCcCHHHHHHHH
Confidence            999999 689999998754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.67  E-value=1.7e-08  Score=94.88  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             ccccccChhHHHHH-HHHHHhc--CceEEEEeCCCCCCccccc----ccccccc-CEEEEecCCCCccchhhH----HHH
Q 023913          172 DLLLCESGGDNLAA-NFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQA-DLLVINKTDLASAIGADL----AVM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~-~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~~----~~~  239 (275)
                      ...+.+++|+.+-. ...+.+.  +..|+++|++.+...+...    ...+..+ -++|+||+|+.+......    +++
T Consensus       105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~  184 (434)
T 1zun_B          105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY  184 (434)
T ss_dssp             EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHH
Confidence            45567788865422 2222233  8899999998875433211    1122333 467799999986321222    334


Q ss_pred             HHHHHhcC---CCCCEEEEEecCCcCHHHHhc
Q 023913          240 ERDALRMR---DGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       240 ~~~i~~~~---~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      .+.++.+.   +..+++++|+++|.|+++++.
T Consensus       185 ~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          185 LKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            44445554   347899999999999987443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.66  E-value=3.8e-09  Score=93.51  Aligned_cols=73  Identities=15%  Similarity=-0.036  Sum_probs=41.4

Q ss_pred             EEEeCCCCCCcccc--cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcC-CCCCEEEEEecCCcCHHHHhcc
Q 023913          197 YIIDVSGGDKIPRK--GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMR-DGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       197 lllD~t~g~d~~~~--~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~-~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +++|++........  ....   ...+-++|+||+|+.+......+.++..+..+. +..+++++|++++.|++++++.
T Consensus       168 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~  246 (299)
T 2aka_B          168 AVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA  246 (299)
T ss_dssp             EEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHH
T ss_pred             EEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHH
Confidence            57787665432221  1111   134568999999998652112222221111111 2357899999999999888764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.65  E-value=1.2e-09  Score=105.35  Aligned_cols=76  Identities=9%  Similarity=-0.006  Sum_probs=44.9

Q ss_pred             CceEEEEeCCCCCCcccccc--ccc--cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKGG--PGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~~--~~i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..|+++|++...+......  ...  ..+-+||+||+|+........+.+++....+  +.+++++||+++.|+++++.
T Consensus       123 d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gi~eL~~  200 (535)
T 3dpu_A          123 SVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAI--ENRFHRISCKNGDGVESIAK  200 (535)
T ss_dssp             EEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG--TTCEEECCC-----CTTHHH
T ss_pred             cEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhc--CCceEEEecCcccCHHHHHH
Confidence            56778889876533221110  011  2566899999999865333445555555444  46799999999999999887


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       201 ~l  202 (535)
T 3dpu_A          201 SL  202 (535)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.65  E-value=6.7e-08  Score=81.28  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=31.9

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~  118 (275)
                      ..+|++++|+|+||||||||++.+++  .+.+++.++..+.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence            46799999999999999999999999  3446676666543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.65  E-value=5.6e-08  Score=90.62  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=61.0

Q ss_pred             ccccccChhHHHHHHH-HHHhc--CceEEEEeCCCCC-Cccccc----ccccccc-CEEEEecCCCCccch--hhHHHHH
Q 023913          172 DLLLCESGGDNLAANF-SRELA--DYIIYIIDVSGGD-KIPRKG----GPGITQA-DLLVINKTDLASAIG--ADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~l-aral~--~~~vlllD~t~g~-d~~~~~----~~~i~~a-diivlNK~Dl~~~~~--~~~~~~~  240 (275)
                      ...+++++|...-... .+.+.  +..|+++|++.+. ..+...    ...+... -++++||+|+.+...  ...+++.
T Consensus        84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            4556778886543222 22222  8899999998775 322211    1122333 356799999987521  1233444


Q ss_pred             HHHHhc-CCCCCEEEEEecCCcCHHHHhcccc
Q 023913          241 RDALRM-RDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       241 ~~i~~~-~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +.+... ....+++++|++++.|+++|++.+.
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~  195 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIE  195 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            444432 2367999999999999999987553

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.64  E-value=2.3e-09  Score=93.43  Aligned_cols=77  Identities=5%  Similarity=-0.010  Sum_probs=44.3

Q ss_pred             CceEEEEeCCCCCCcccccc--------ccccccCEEEEe-cCCCCccchhh-H-----HHHHHHHHhcCC----CCCEE
Q 023913          193 DYIIYIIDVSGGDKIPRKGG--------PGITQADLLVIN-KTDLASAIGAD-L-----AVMERDALRMRD----GGPFI  253 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~~--------~~i~~adiivlN-K~Dl~~~~~~~-~-----~~~~~~i~~~~~----~~~ii  253 (275)
                      +..|+++|++..........        ..+..+.++|+| |+|+....... +     +.+.+.+..+..    ..+ +
T Consensus       107 d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~  185 (260)
T 2xtp_A          107 HVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNN-R  185 (260)
T ss_dssp             SEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCT-T
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecC-c
Confidence            77889999875221111110        111446788888 99998541111 0     123334444432    222 7


Q ss_pred             EEEecCCcCHHHHhccc
Q 023913          254 FAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       254 ~~S~~~~~g~~~l~~~~  270 (275)
                      ++|++++.|+++++..+
T Consensus       186 ~~SA~~~~gv~~l~~~i  202 (260)
T 2xtp_A          186 AEGSNQDDQVKELMDCI  202 (260)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHH
Confidence            88999999999998754

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.64  E-value=6.8e-09  Score=104.58  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.+...+..+|++++|+||||||||||||+++|+.
T Consensus       597 vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          597 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            44444555779999999999999999999999974

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.63  E-value=3.4e-08  Score=96.47  Aligned_cols=96  Identities=27%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             ccccccChhHHH-HHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913          172 DLLLCESGGDNL-AANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL  244 (275)
Q Consensus       172 d~~~~eS~G~~q-~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~  244 (275)
                      ...+++++|... .....+.+.  +..|+++|++.+...+...    ......+-++++||+|+...   ..+.+.+.+.
T Consensus        74 ~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a---~~~~v~~el~  150 (600)
T 2ywe_A           74 KLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA---DVDRVKKQIE  150 (600)
T ss_dssp             EEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC---CHHHHHHHHH
T ss_pred             EEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc---CHHHHHHHHH
Confidence            444666777543 222334443  8999999999886544321    11234567889999999765   2333444444


Q ss_pred             hcCC--CCCEEEEEecCCcCHHHHhccc
Q 023913          245 RMRD--GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       245 ~~~~--~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +...  ..+++++|+++|.|++++++.+
T Consensus       151 ~~lg~~~~~vi~vSAktg~GI~~Lle~I  178 (600)
T 2ywe_A          151 EVLGLDPEEAILASAKEGIGIEEILEAI  178 (600)
T ss_dssp             HTSCCCGGGCEECBTTTTBSHHHHHHHH
T ss_pred             HhhCCCcccEEEEEeecCCCchHHHHHH
Confidence            4332  1359999999999999998753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.63  E-value=1.7e-08  Score=98.63  Aligned_cols=96  Identities=16%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             ccccccChhHHHH-HHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913          172 DLLLCESGGDNLA-ANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL  244 (275)
Q Consensus       172 d~~~~eS~G~~q~-~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~  244 (275)
                      ...+++++|...- ....+.+  ++..|+++|++.+...+...    ......+-++|+||+|+....   .+.+.+.+.
T Consensus        72 ~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~---~~~v~~ei~  148 (599)
T 3cb4_D           72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD---PERVAEEIE  148 (599)
T ss_dssp             EEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC---HHHHHHHHH
T ss_pred             EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc---HHHHHHHHH
Confidence            4446667775322 2233334  38999999998886544321    111245668899999998652   233333333


Q ss_pred             hcCC--CCCEEEEEecCCcCHHHHhccc
Q 023913          245 RMRD--GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       245 ~~~~--~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +...  ..+++++|+++|.|++++++.+
T Consensus       149 ~~lg~~~~~vi~vSAktg~GI~~Ll~~I  176 (599)
T 3cb4_D          149 DIVGIDATDAVRCSAKTGVGVQDVLERL  176 (599)
T ss_dssp             HHTCCCCTTCEEECTTTCTTHHHHHHHH
T ss_pred             HHhCCCcceEEEeecccCCCchhHHHHH
Confidence            3322  2469999999999999998754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.63  E-value=8.4e-09  Score=96.12  Aligned_cols=91  Identities=11%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             cccccccChhHHHHHH-HHHHh--cCceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913          171 ADLLLCESGGDNLAAN-FSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~-laral--~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~  238 (275)
                      ....+.++.|..+-.. ..+.+  ++..|+++|++.+...+...    ......+. ++++||+|+.+.. ...    ++
T Consensus        75 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~-~~~~~~~~~  153 (405)
T 2c78_A           75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP-ELLDLVEME  153 (405)
T ss_dssp             CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH-HHHHHHHHH
T ss_pred             eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH-HHHHHHHHH
Confidence            4556677777654222 22223  38999999998875433221    12234554 5789999998531 222    23


Q ss_pred             HHHHHHhcCC---CCCEEEEEecCCcC
Q 023913          239 MERDALRMRD---GGPFIFAQVGWVIG  262 (275)
Q Consensus       239 ~~~~i~~~~~---~~~ii~~S~~~~~g  262 (275)
                      +.+.+..+..   ..+++++|++++.+
T Consensus       154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          154 VRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHhcccccCCCEEEccHHHhhh
Confidence            4455555442   47899999999987

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.62  E-value=6e-08  Score=96.44  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..++..++|+|..|+|||||+|.|+|.
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            345788999999999999999999985

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.61  E-value=1.5e-08  Score=92.79  Aligned_cols=49  Identities=18%  Similarity=0.095  Sum_probs=40.8

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      .+++.+. +...+|++++|+|+||||||||+++|+|++.|+ |.+.+.+.+
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            4444444 666889999999999999999999999999999 888777643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.61  E-value=3.1e-08  Score=89.00  Aligned_cols=54  Identities=22%  Similarity=0.380  Sum_probs=41.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+|++++|+|+||||||||+++|++++.  |+ |++.++..+-.... ...++.+|++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~-~~~~~~~~~v  134 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP-NQVLKERGLM  134 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC-HHHHHHHTCT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc-HHHHHhCCEe
Confidence            5699999999999999999999999988  87 99988543322222 2345567776

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.61  E-value=1.7e-08  Score=92.38  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+|+++.|+||||||||||++.+++..
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.61  E-value=3.4e-08  Score=84.91  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...++|+|++|+|||||++.|+|...
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            45799999999999999999999644

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.60  E-value=1.5e-09  Score=91.92  Aligned_cols=74  Identities=11%  Similarity=-0.083  Sum_probs=45.4

Q ss_pred             CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|.+.......  .....+     ..+-++|+||+|+.+..  ..+...+..+..  +.+++++|++++.|+++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKK--NLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCS--SCGGGCCHHHHH--TCEEEECBGGGTBTTTH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccc--ccHHHHHHHHHc--CCEEEEEeCCCCCCHHH
Confidence            67888889775422111  110111     34568899999997652  111222222232  46899999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      ++..+
T Consensus       165 l~~~l  169 (221)
T 3gj0_A          165 PFLWL  169 (221)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.60  E-value=2.8e-08  Score=91.79  Aligned_cols=94  Identities=5%  Similarity=-0.026  Sum_probs=56.1

Q ss_pred             cccccChhHHHHHH-HHHH--hcCceEEEEeCCCCCCccccc----cccccccC-EEEEe-cCCCCccchhhHH----HH
Q 023913          173 LLLCESGGDNLAAN-FSRE--LADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVIN-KTDLASAIGADLA----VM  239 (275)
Q Consensus       173 ~~~~eS~G~~q~~~-lara--l~~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlN-K~Dl~~~~~~~~~----~~  239 (275)
                      ..+.+++|+.+-.. ..+.  .++..|+++| ..+...+.+.    ...+..+. ++++| |+|+ +.  ...+    ++
T Consensus        62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~~~~i  137 (370)
T 2elf_A           62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDELKAKL  137 (370)
T ss_dssp             EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHHHHHH
Confidence            44455666543221 1222  2388999999 6664433211    12234556 88899 9999 54  3333    33


Q ss_pred             HHHHHhcC-CCCCEEE--EEecC---CcCHHHHhccc
Q 023913          240 ERDALRMR-DGGPFIF--AQVGW---VIGIIFTLSIT  270 (275)
Q Consensus       240 ~~~i~~~~-~~~~ii~--~S~~~---~~g~~~l~~~~  270 (275)
                      ++.++... ...++++  +||++   ++|++++++.+
T Consensus       138 ~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l  174 (370)
T 2elf_A          138 KVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARI  174 (370)
T ss_dssp             HHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHH
T ss_pred             HHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHH
Confidence            34343332 3478999  99999   99999988744

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.60  E-value=5.7e-09  Score=93.32  Aligned_cols=123  Identities=17%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCC----cEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g----~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      .++.+++|+|++|||||||.+.|.+++.+.|    .+.++..|..-... ..+.++.+-..+. .....-+++.......
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~-~l~~~~g~p~a~d~~~  106 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-EDQLKLNEQFKNN-KLLQGRGLPGTHDMKL  106 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTC-GGGSSSCSTTSBCHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-HHHHHHhcccccc-chhhhccCcchhHHHH
Confidence            3578999999999999999999999987643    33342433221121 2222221100000 0000011222222222


Q ss_pred             HHHHHHHHHHhhcc------cc---cccccccChhHHHHHHHH--HHhcCceEEEEe-CCCCCCc
Q 023913          155 ISINLGPLEELSNL------FK---ADLLLCESGGDNLAANFS--RELADYIIYIID-VSGGDKI  207 (275)
Q Consensus       155 ~~~~~~~L~~l~~~------~~---~d~~~~eS~G~~q~~~la--ral~~~~vlllD-~t~g~d~  207 (275)
                      +   .+.|..+...      ..   ..+-...|+||.||+++|  +++ +++|+|+| ++.+.+.
T Consensus       107 l---~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~  167 (290)
T 1odf_A          107 L---QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNP  167 (290)
T ss_dssp             H---HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCC
T ss_pred             H---HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCc
Confidence            2   2234433221      00   111111299999998886  555 99999999 6676665

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.59  E-value=5.7e-09  Score=102.38  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=56.6

Q ss_pred             cccccccChhHHHHHHHHHHhc---CceEEEEeCCCCC-------Cccccc----ccccccc-CEEEEecCCCCccchhh
Q 023913          171 ADLLLCESGGDNLAANFSRELA---DYIIYIIDVSGGD-------KIPRKG----GPGITQA-DLLVINKTDLASAIGAD  235 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~laral~---~~~vlllD~t~g~-------d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~  235 (275)
                      ....+.+++|+.+-......-+   +..|+++|++.+.       ..+...    ...+... -+||+||+|+.+.....
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~  324 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  324 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence            4556777888765444333222   7889999987651       111110    1112333 46779999998732233


Q ss_pred             HHHHH----HHHHhcCC---CCCEEEEEecCCcCHHHH
Q 023913          236 LAVME----RDALRMRD---GGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       236 ~~~~~----~~i~~~~~---~~~ii~~S~~~~~g~~~l  266 (275)
                      .+.+.    +.+..+.-   ..+++++||++|.|++++
T Consensus       325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            33333    33333321   578999999999999865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.57  E-value=5.9e-08  Score=90.20  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=60.6

Q ss_pred             cccccccChhHHHHHHHH-HHhc--CceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913          171 ADLLLCESGGDNLAANFS-RELA--DYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~la-ral~--~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~  238 (275)
                      ....+.+++|..+-.... +.+.  +..|+++|++.+...+...    ......+. ++++||+|+.+.. ...    ++
T Consensus        66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~~~  144 (397)
T 1d2e_A           66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELE  144 (397)
T ss_dssp             CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHHHH
Confidence            456677888876533322 2232  7889999998876443221    11234554 5789999998531 222    34


Q ss_pred             HHHHHHhcCC---CCCEEEEEecCCcC----------HHHHhccc
Q 023913          239 MERDALRMRD---GGPFIFAQVGWVIG----------IIFTLSIT  270 (275)
Q Consensus       239 ~~~~i~~~~~---~~~ii~~S~~~~~g----------~~~l~~~~  270 (275)
                      +.+.+++..-   ..+++++|++++.+          +++|++.+
T Consensus       145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l  189 (397)
T 1d2e_A          145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAV  189 (397)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHH
Confidence            4455554431   47899999999763          77777643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.57  E-value=1e-08  Score=89.42  Aligned_cols=60  Identities=20%  Similarity=0.126  Sum_probs=46.5

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHH---hccCCC-CcEE--------EEeccCCC-CChHHHHHhccccCch
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIFT-KEDGEFLMRNGALPEE  136 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~---g~l~~~-g~i~--------i~~~d~~~-~~~~~~~~~ig~v~q~  136 (275)
                      ...+|++++|+||+||||||++++|+   |+..++ |.+.        ..+.++.. .....+++.+++++|.
T Consensus        23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (252)
T 4e22_A           23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS   95 (252)
T ss_dssp             CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence            34679999999999999999999999   887777 8776        55555532 2345677788888865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.57  E-value=4e-08  Score=86.57  Aligned_cols=75  Identities=12%  Similarity=-0.035  Sum_probs=35.7

Q ss_pred             ceEEEEeCCC-CCCcccc-ccccc--cccCEEEEecCCCCccchhhHHHHHHHHHhc--CCCCCEEEEEecCCcCHHHHh
Q 023913          194 YIIYIIDVSG-GDKIPRK-GGPGI--TQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       194 ~~vlllD~t~-g~d~~~~-~~~~i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~--~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      ..++++|++. +...... ....+  ..+-++|+||+|+.+.  .+++.+.+.+.+.  ..+.+++.+|+++++|+++++
T Consensus       118 ~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          118 CCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             EEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             EEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            5677777654 3322111 11111  4566889999999876  4554444433322  235678889999999998876


Q ss_pred             ccc
Q 023913          268 SIT  270 (275)
Q Consensus       268 ~~~  270 (275)
                      +.+
T Consensus       196 ~~l  198 (274)
T 3t5d_A          196 KKI  198 (274)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.57  E-value=9.1e-08  Score=92.26  Aligned_cols=61  Identities=20%  Similarity=0.128  Sum_probs=37.9

Q ss_pred             cccccccChhHHHHH-HHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          171 ADLLLCESGGDNLAA-NFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~-~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                      ....++++.|+..-. ...+.+.  +..|+++|++.+...+...    ......+-++|+||+|+...
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred             EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence            445667777764322 2223333  8899999998876543321    11234567899999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.57  E-value=1e-08  Score=91.60  Aligned_cols=26  Identities=12%  Similarity=0.132  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .-+.++|+|+.|||||||++.|+|.-
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence            45789999999999999999999964

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.55  E-value=1.1e-08  Score=85.17  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=45.1

Q ss_pred             cCceEEEEeCCCCCCc--ccccc---cc----ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913          192 ADYIIYIIDVSGGDKI--PRKGG---PG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG  262 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~--~~~~~---~~----i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g  262 (275)
                      ++..++++|.+.....  .....   ..    -..+-++|.||+|+........+.........  +.+++++||++|.|
T Consensus        81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~--~~~~~e~SA~~g~~  158 (192)
T 2cjw_A           81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF--DXKFIETSAAVQHN  158 (192)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHh--CCceEEeccccCCC
Confidence            3778888887643111  00000   00    12445788999999753212223222222222  46899999999999


Q ss_pred             HHHHhccc
Q 023913          263 IIFTLSIT  270 (275)
Q Consensus       263 ~~~l~~~~  270 (275)
                      +++++..+
T Consensus       159 v~~lf~~l  166 (192)
T 2cjw_A          159 VKELFEGI  166 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.54  E-value=6.7e-09  Score=86.34  Aligned_cols=77  Identities=16%  Similarity=0.019  Sum_probs=44.5

Q ss_pred             CceEEEEeCCCCCCcc-ccc---cccc-----cccCEEEEecCCCCccch--hhHHHH----HHHHHh-c--CCCCCEEE
Q 023913          193 DYIIYIIDVSGGDKIP-RKG---GPGI-----TQADLLVINKTDLASAIG--ADLAVM----ERDALR-M--RDGGPFIF  254 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~-~~~---~~~i-----~~adiivlNK~Dl~~~~~--~~~~~~----~~~i~~-~--~~~~~ii~  254 (275)
                      +..|+++|.+...... ...   ...+     ..+-++|.||+|+.+...  .....+    .+.+.+ .  ..+.++++
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e  176 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL  176 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence            7789999987641110 000   0111     345578899999976410  111111    112222 1  23568999


Q ss_pred             EEecCCcCHHHHhccc
Q 023913          255 AQVGWVIGIIFTLSIT  270 (275)
Q Consensus       255 ~S~~~~~g~~~l~~~~  270 (275)
                      +|+++ +|+++++..+
T Consensus       177 ~Sa~~-~~v~~~f~~l  191 (196)
T 3llu_A          177 TSIYD-HSIFEAFSKV  191 (196)
T ss_dssp             ECTTS-THHHHHHHHH
T ss_pred             EEech-hhHHHHHHHH
Confidence            99999 9999998754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.54  E-value=2.6e-08  Score=83.72  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3588999999999999999999999875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.54  E-value=4.1e-07  Score=81.31  Aligned_cols=175  Identities=20%  Similarity=0.102  Sum_probs=88.9

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHH
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~  154 (275)
                      .+. ++++++|+|+||+||||++..|++++.+. +++.+.+.|+............       .....+...+.......
T Consensus        94 ~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~-------~~~~~l~~~~~~~~~~p  165 (295)
T 1ls1_A           94 VLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------GEKVGVPVLEVMDGESP  165 (295)
T ss_dssp             CCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHH-------HHHHTCCEEECCTTCCH
T ss_pred             ecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHh-------cccCCeEEEEcCCCCCH
Confidence            344 89999999999999999999999999877 8999999887531110000000       00000000000000000


Q ss_pred             HHHHHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-CceEEEEeCCCCCCcccccccccc--c-cCEEE
Q 023913          155 ISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--Q-ADLLV  222 (275)
Q Consensus       155 ~~~~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~-adiiv  222 (275)
                      .......+..+ ....+|+++++++|.        .+...+.+.+. +..++++|+..+.+..... ..+.  . ..-+|
T Consensus       166 ~~l~~~~l~~~-~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~-~~~~~~~~i~giv  243 (295)
T 1ls1_A          166 ESIRRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA-RAFDEKVGVTGLV  243 (295)
T ss_dssp             HHHHHHHHHHH-HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH-HHHHHHTCCCEEE
T ss_pred             HHHHHHHHHHH-HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH-HHHhhcCCCCEEE
Confidence            01112234333 123578888884432        22223333344 5667788876553322111 1121  1 24589


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +||.|.....+.    +.+.+...  +.||.+++  .|+.++++..
T Consensus       244 lnk~d~~~~~g~----~~~~~~~~--~~pi~~i~--~g~~~~dl~~  281 (295)
T 1ls1_A          244 LTKLDGDARGGA----ALSARHVT--GKPIYFAG--VSEKPEGLEP  281 (295)
T ss_dssp             EECGGGCSSCHH----HHHHHHHH--CCCEEEEC--------CCEE
T ss_pred             EECCCCCccHHH----HHHHHHHH--CcCEEEEe--CCCCcccccc
Confidence            999997655322    22333333  57888876  4776665543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.53  E-value=9e-08  Score=90.03  Aligned_cols=99  Identities=11%  Similarity=0.032  Sum_probs=59.3

Q ss_pred             ccccccccChhHHHHHHHHHH-hc--CceEEEEeCCCC-------CCccccc----ccccccc-CEEEEecCCCCccc--
Q 023913          170 KADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGG-------DKIPRKG----GPGITQA-DLLVINKTDLASAI--  232 (275)
Q Consensus       170 ~~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g-------~d~~~~~----~~~i~~a-diivlNK~Dl~~~~--  232 (275)
                      .....+.+++|+.+-...... +.  +..|+++|++.+       ...+.+.    ...+..+ -++++||+|+.+..  
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            345667788887654433332 22  789999998875       2111111    1122334 46789999998631  


Q ss_pred             hhh----HHHHHHHHHhcC--C-CCCEEEEEecCCcCHHHHhc
Q 023913          233 GAD----LAVMERDALRMR--D-GGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       233 ~~~----~~~~~~~i~~~~--~-~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ...    .+++.+.++.+.  + ..+++++|+++|.|+.++.+
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            122    334444554443  2 37899999999999875543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.53  E-value=1.2e-07  Score=79.45  Aligned_cols=55  Identities=18%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchh
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      .+|++++|+|+||||||||+++|++.+   |.+.+.+.++.. .........|+++|+.
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~-~~~~~~~~~g~~~~~~   81 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS-PENIATMQRGIPLTDE   81 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC-HHHHHHHHTTCCCCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc-HHHHHHHhcCCCCCCc
Confidence            469999999999999999999999987   677777766542 1112223578888864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.51  E-value=1.3e-07  Score=93.96  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=38.8

Q ss_pred             cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                      ....+++++|... .....+++  ++..|+++|++.+...+...    ......+-++|+||+|+...
T Consensus        77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence            4556677777632 22223333  38999999998876543221    12235677899999999764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.51  E-value=8.2e-08  Score=99.33  Aligned_cols=98  Identities=13%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCccccc----cccccccC-EEEEecCCCCccchhhH----HH
Q 023913          171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADL----AV  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~~~~----~~  238 (275)
                      ....+.+++|+.+-...... +.  +..|+++|++.+...+.+.    ......+. +|++||+|+.+.. ..+    ++
T Consensus       359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~eE  437 (1289)
T 3avx_A          359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVEME  437 (1289)
T ss_dssp             CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHHHH
Confidence            45567778887664433322 22  7899999998875443321    11234554 6789999998531 212    34


Q ss_pred             HHHHHHhcC---CCCCEEEEEecCC--------cCHHHHhcc
Q 023913          239 MERDALRMR---DGGPFIFAQVGWV--------IGIIFTLSI  269 (275)
Q Consensus       239 ~~~~i~~~~---~~~~ii~~S~~~~--------~g~~~l~~~  269 (275)
                      +.+.+++..   ...+++++|+++|        +|++++++.
T Consensus       438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLlea  479 (1289)
T 3avx_A          438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGF  479 (1289)
T ss_dssp             HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhH
Confidence            445555543   2478999999998        467777754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.51  E-value=2.3e-07  Score=92.39  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=39.1

Q ss_pred             cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                      ....+++++|... .....+++  ++..|+++|++.+...+...    ......+-++++||+|+...
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            5566778888643 22333444  38999999998876433211    11234567899999998754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.50  E-value=2.5e-08  Score=89.10  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCCCccc---cccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.......   .....+     ..+-++|+||+|+.....            ...+...+..+.. ...++
T Consensus       228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  306 (332)
T 2wkq_A          228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY  306 (332)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc-CCcEE
Confidence            67788889766432111   110111     345688999999965410            1122333333333 22489


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++|++++.|++++++.+
T Consensus       307 ~~~Sa~~~~gi~~l~~~l  324 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEA  324 (332)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHHH
Confidence            999999999999998754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.48  E-value=4.7e-09  Score=90.67  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=29.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      ++++|+|||||||||||++|+|++.|+ |.|.+.+.++
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            789999999999999999999999998 9999888776

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.47  E-value=5.2e-09  Score=100.23  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHH-------hcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDAL-------RMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~-------~~~~~~~ii~~S~~~~~  261 (275)
                      +..|+++|++.+...+...    ......+-++++||+|+.....   +++.+.+.       .+....+++++|+++|.
T Consensus        76 D~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~---~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           76 DIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP---DRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             SSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC---CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             CEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH---HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            7789999988776544321    1123456688899999975310   11111111       11223689999999999


Q ss_pred             CHHHHhccc
Q 023913          262 GIIFTLSIT  270 (275)
Q Consensus       262 g~~~l~~~~  270 (275)
                      |++++++.+
T Consensus       153 gI~eLle~I  161 (501)
T 1zo1_I          153 GIDELLDAI  161 (501)
T ss_dssp             TCTTHHHHT
T ss_pred             Ccchhhhhh
Confidence            999998865

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.47  E-value=5.3e-09  Score=98.53  Aligned_cols=137  Identities=20%  Similarity=0.278  Sum_probs=74.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc---hHHHH-
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IREDI-  155 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~---~~~~~-  155 (275)
                      ..+++|+|++|+||||++..|++.+... .++.++..|+......+..+..          ....+.+...   ...+. 
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~----------~~~~gv~v~~~~~~~~dp~  168 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQL----------AEKIHVPIYGDETRTKSPV  168 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHH----------HHHSSCCEECCSSSCCSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHh----------hhccCcceEecCCCCCCHH
Confidence            4689999999999999999999988765 6799888887532211100000          0000110000   00000 


Q ss_pred             HHHHHHHHHhhcccccccccccChhHHHH-HHHH---HHh---c--CceEEEEeCCCCCCcccccccccc--c-c-CEEE
Q 023913          156 SINLGPLEELSNLFKADLLLCESGGDNLA-ANFS---REL---A--DYIIYIIDVSGGDKIPRKGGPGIT--Q-A-DLLV  222 (275)
Q Consensus       156 ~~~~~~L~~l~~~~~~d~~~~eS~G~~q~-~~la---ral---~--~~~vlllD~t~g~d~~~~~~~~i~--~-a-diiv  222 (275)
                      ......+..+   ..++.+++++.|.... ..+.   +.+   .  +..++++|++.+.+..... ..+.  . . ..+|
T Consensus       169 ~i~~~~l~~~---~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~-~~~~~~~~~i~gvV  244 (432)
T 2v3c_C          169 DIVKEGMEKF---KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQA-KAFKEAVGEIGSII  244 (432)
T ss_dssp             TTHHHHHHTT---SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHH-HHHHTTSCSCEEEE
T ss_pred             HHHHHHHHHh---hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHH-HHHhhcccCCeEEE
Confidence            0011244443   5678899997764321 1111   111   1  4566888987775432211 1122  2 3 6789


Q ss_pred             EecCCCCcc
Q 023913          223 INKTDLASA  231 (275)
Q Consensus       223 lNK~Dl~~~  231 (275)
                      +||+|....
T Consensus       245 lnK~D~~~~  253 (432)
T 2v3c_C          245 VTKLDGSAK  253 (432)
T ss_dssp             EECSSSCST
T ss_pred             EeCCCCccc
Confidence            999998754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.46  E-value=5.3e-09  Score=102.24  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             cCceEEEEeCCCCC-------Cccccc----ccccccc-CEEEEecCCCCccchhhHHHHHHHHHhcC--------CCCC
Q 023913          192 ADYIIYIIDVSGGD-------KIPRKG----GPGITQA-DLLVINKTDLASAIGADLAVMERDALRMR--------DGGP  251 (275)
Q Consensus       192 ~~~~vlllD~t~g~-------d~~~~~----~~~i~~a-diivlNK~Dl~~~~~~~~~~~~~~i~~~~--------~~~~  251 (275)
                      ++..|+|+|++.+.       ..+...    ...+..+ -+||+||+|+.+......+.+.+.+..+.        ...+
T Consensus       279 aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~  358 (592)
T 3mca_A          279 ADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVH  358 (592)
T ss_dssp             ---CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEE
T ss_pred             CCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceE
Confidence            37788999977643       222211    1123444 35689999997632233444444443322        1347


Q ss_pred             EEEEEecCCcCHH
Q 023913          252 FIFAQVGWVIGII  264 (275)
Q Consensus       252 ii~~S~~~~~g~~  264 (275)
                      ++++|+++|.|++
T Consensus       359 ii~iSA~~G~gI~  371 (592)
T 3mca_A          359 FVPISAISGTNLI  371 (592)
T ss_dssp             EEEECSSSCSSSC
T ss_pred             EEEEecccCcccc
Confidence            9999999999997

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.45  E-value=3.3e-11  Score=100.61  Aligned_cols=77  Identities=22%  Similarity=0.191  Sum_probs=39.8

Q ss_pred             CceEEEEeCCCCCCccc--cccccc------cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i------~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  .....+      ..+-+||+||+|+.+......+..++....+  +.+++++|+++++|++
T Consensus       107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSA~~g~gv~  184 (199)
T 3l0i_B          107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--GIPFLETSAKNATNVE  184 (199)
T ss_dssp             SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--TCCBCCCCC---HHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--CCeEEEEECCCCCCHH
Confidence            56777888765422110  000001      3455788999999754211222233333333  4689999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      +++..+.
T Consensus       185 ~l~~~l~  191 (199)
T 3l0i_B          185 QSFMTMA  191 (199)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.45  E-value=2.9e-07  Score=78.52  Aligned_cols=30  Identities=27%  Similarity=0.159  Sum_probs=26.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh--ccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK--FLRD  107 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g--~l~~  107 (275)
                      ..+|++++|+||||||||||++.|++  .+++
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~   52 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPI   52 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence            45799999999999999999999999  4554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.45  E-value=1.1e-07  Score=76.58  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g  109 (275)
                      +|+.++|+||+|||||||++++++.+.+.|
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g   64 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG   64 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999887665

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.45  E-value=1.6e-08  Score=91.13  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE---EeccCCCCChHHHHH-hccccCchh
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLM-RNGALPEER  137 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i---~~~d~~~~~~~~~~~-~ig~v~q~~  137 (275)
                      .+|++++|+|+||||||||+|+|+|.+++. |.|.+   .+.......  ++.+ .+||++|.+
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtp  232 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTP  232 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCC
Confidence            469999999999999999999999999887 99887   444433211  1122 267887764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.45  E-value=1.5e-09  Score=104.77  Aligned_cols=78  Identities=14%  Similarity=0.015  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhh-HHHHHHH---HHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGAD-LAVMERD---ALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~-~~~~~~~---i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.+...+...    ......+-++++||+|+....... .+.+.+.   ........+++++|+++|.|++
T Consensus        77 D~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           77 DIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             SSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            7889999988776543321    111234567889999997532111 1112111   1112234589999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       157 eLle~I  162 (537)
T 3izy_P          157 ALAEAT  162 (537)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.44  E-value=3.8e-08  Score=88.36  Aligned_cols=75  Identities=9%  Similarity=-0.003  Sum_probs=43.2

Q ss_pred             CceEEEEeCCCCCCccc--cc---cccc-----cccCEEEEecCCCCcc--ch----hhHHHHHHHHHhcC-CCCCEEEE
Q 023913          193 DYIIYIIDVSGGDKIPR--KG---GPGI-----TQADLLVINKTDLASA--IG----ADLAVMERDALRMR-DGGPFIFA  255 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~---~~~i-----~~adiivlNK~Dl~~~--~~----~~~~~~~~~i~~~~-~~~~ii~~  255 (275)
                      +..|+++|++.......  ..   ...+     ..+-++|+||+|+...  ..    ...+.+.+..+.+. |..+++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            67889999876532111  00   0111     3456888999999873  11    11133334444442 24789999


Q ss_pred             EecCCcCHHHHhc
Q 023913          256 QVGWVIGIIFTLS  268 (275)
Q Consensus       256 S~~~~~g~~~l~~  268 (275)
                      |+++ .++.+++.
T Consensus       162 Sa~~-~~i~e~~~  173 (307)
T 3r7w_A          162 SIWD-ESLYKAWS  173 (307)
T ss_dssp             CTTS-SHHHHHHH
T ss_pred             eecC-ChHHHHHH
Confidence            9999 65555543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.44  E-value=4.7e-08  Score=89.90  Aligned_cols=44  Identities=11%  Similarity=-0.054  Sum_probs=24.0

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcC--CCCCEEEEEecCCcC
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIG  262 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~--~~~~ii~~S~~~~~g  262 (275)
                      .+-++|+||+|+.+.  .++..+.+.+.+..  .+.+++++|++++.+
T Consensus       175 ~piIlV~NK~Dl~~~--~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~  220 (361)
T 2qag_A          175 VNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAESDE  220 (361)
T ss_dssp             SCEEEEEECCSSSCH--HHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred             CCEEEEEECCCCCCH--HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence            456889999999876  44444333333322  257899999998887

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.43  E-value=6.4e-08  Score=82.83  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHH-hccCC
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALC-KFLRD  107 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~-g~l~~  107 (275)
                      ..++...+|++++|+||||||||||+++|+ +++++
T Consensus        19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             ---CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            344445679999999999999999999999 98754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.42  E-value=1.1e-07  Score=90.04  Aligned_cols=97  Identities=12%  Similarity=-0.010  Sum_probs=57.3

Q ss_pred             cccccccChhHHHHHHHHHH-hc--CceEEEEeCCCCCCc-------cccc----ccccccc-CEEEEecCCCCccchhh
Q 023913          171 ADLLLCESGGDNLAANFSRE-LA--DYIIYIIDVSGGDKI-------PRKG----GPGITQA-DLLVINKTDLASAIGAD  235 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~lara-l~--~~~vlllD~t~g~d~-------~~~~----~~~i~~a-diivlNK~Dl~~~~~~~  235 (275)
                      ....+.+++|+.+-...... +.  +..|+++|++.+...       +...    ......+ -++++||+|+.+.....
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~  164 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR  164 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHH
Confidence            45667778887654433322 22  788999998865311       1111    1122344 46679999998421122


Q ss_pred             H----HHHHHHHHhcCC---CCCEEEEEecCCcCHHHHh
Q 023913          236 L----AVMERDALRMRD---GGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       236 ~----~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~l~  267 (275)
                      .    +++.+.++.+.-   ..+++++|+++|.|++++.
T Consensus       165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            2    334444444431   3789999999999997654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.42  E-value=3.5e-08  Score=90.25  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +...++|+|..|||||||++.|+|.-
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999999999999963

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.41  E-value=4.1e-08  Score=95.90  Aligned_cols=78  Identities=17%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccch----------------hhHH-------HHHHHHHh
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIG----------------ADLA-------VMERDALR  245 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~----------------~~~~-------~~~~~i~~  245 (275)
                      +..|+++|++.|...+...    ......+-++++||+|+.....                ...+       .+.+.+.+
T Consensus        95 D~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e  174 (594)
T 1g7s_A           95 DLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHE  174 (594)
T ss_dssp             SEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999886544321    1123456689999999974210                0001       12222222


Q ss_pred             c-------------CCCCCEEEEEecCCcCHHHHhccc
Q 023913          246 M-------------RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       246 ~-------------~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .             ....+++++||++|.|+++|++.+
T Consensus       175 ~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I  212 (594)
T 1g7s_A          175 EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML  212 (594)
T ss_dssp             TTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHH
T ss_pred             cCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHH
Confidence            1             123489999999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.41  E-value=2.6e-07  Score=77.58  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +...++|+|+.|+|||||++.|++..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35679999999999999999999863

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.37  E-value=1.3e-07  Score=89.91  Aligned_cols=97  Identities=13%  Similarity=0.032  Sum_probs=53.6

Q ss_pred             cccccccChhHHHHHHH-HHHh--cCceEEEEeCCCCCC-------ccccc----ccccccc-CEEEEecCCCCccc--h
Q 023913          171 ADLLLCESGGDNLAANF-SREL--ADYIIYIIDVSGGDK-------IPRKG----GPGITQA-DLLVINKTDLASAI--G  233 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~l-aral--~~~~vlllD~t~g~d-------~~~~~----~~~i~~a-diivlNK~Dl~~~~--~  233 (275)
                      ....+.++.|..+-... .+.+  ++..|+++|++.+..       .+.+.    ......+ -+|++||+|+.+..  .
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            34567778887543222 2222  278999999887631       11111    1123445 36779999996421  1


Q ss_pred             hh----HHHHHHHHHhc-C-C---CCCEEEEEecCCcCHHHHh
Q 023913          234 AD----LAVMERDALRM-R-D---GGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       234 ~~----~~~~~~~i~~~-~-~---~~~ii~~S~~~~~g~~~l~  267 (275)
                      ..    .+++.+.++.+ . .   ..+++++|+++|.|+++++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            12    23344555544 1 1   5679999999999998765

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.37  E-value=9.5e-08  Score=92.15  Aligned_cols=102  Identities=16%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             cccccccChhHHH-HHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccch-hhHHHHHHH
Q 023913          171 ADLLLCESGGDNL-AANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIG-ADLAVMERD  242 (275)
Q Consensus       171 ~d~~~~eS~G~~q-~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~-~~~~~~~~~  242 (275)
                      ....+++++|+.. .....+.+.  +..|+++|++.+...+...    ......+-++++||+|+..... ..++.+++.
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~  161 (529)
T 2h5e_A           82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENE  161 (529)
T ss_dssp             EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHH
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHH
Confidence            4556677777643 222333443  8999999998876543221    1122455688999999986521 123333333


Q ss_pred             HHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913          243 ALRMRDGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       243 i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      +..-.....+...|++++.|+.+++....+
T Consensus       162 l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~  191 (529)
T 2h5e_A          162 LKIGCAPITWPIGCGKLFKGVYHLYKDETY  191 (529)
T ss_dssp             HCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred             hCCCccceecceecccCcceeeehhhhhHh
Confidence            321100111222578888888877665444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.36  E-value=3.7e-07  Score=76.00  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEeccCCCCChHHHHHhccccCchhH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~  138 (275)
                      .+|++++|+|++|||||||+++|++.+.|+ + .+.....+..   .. ....++|+++++.
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~~~   61 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMR---EG-EVDGVDYFFKTRD   61 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCC---TT-CCBTTTBEECCHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCC---CC-ccCCCceEEcCHH
Confidence            468999999999999999999999998665 4 3322222211   00 1124778887654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.35  E-value=3.3e-07  Score=90.27  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             EEEEcCCcchHHHHHHHHH---hccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           84 VGIGGPVGTGKTALMLALC---KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~---g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      ++|+|..++|||||...|+   |.+...|++. .+....+..+.+..|.|.+-..          ...+           
T Consensus         5 i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~-~g~~~~D~~~~EreRGITI~s~----------~~~~-----------   62 (638)
T 3j25_A            5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVD-KGTTRTDNTLLERQRGITIQTG----------ITSF-----------   62 (638)
T ss_dssp             CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCC-CSCCSTTCSTTHHHHSSCSSCC----------CCCC-----------
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCccccccc-cCCcccCCcHHHHhCCCcEEee----------eEEE-----------
Confidence            7999999999999998885   4444334442 1111222333444444433111          0011           


Q ss_pred             HHHHhhcccccccccccChhHH-HHHHHHHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          161 PLEELSNLFKADLLLCESGGDN-LAANFSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~eS~G~~-q~~~laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                            ........+++++|-. --....|+|.  |..|+|+|+..|...+...    ......+-++++||+|+...
T Consensus        63 ------~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           63 ------QWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             ------BCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred             ------EECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence                  1123344566666632 2233445554  9999999999998776532    22345677999999998654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.32  E-value=1.3e-07  Score=83.65  Aligned_cols=56  Identities=20%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCch
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (275)
                      ..+|  ++|.||||||||||+++|++.+.+ +.+.+.+.++......+..+.+++++|.
T Consensus        43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           43 TPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQR   98 (274)
T ss_dssp             CCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred             CCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence            3456  999999999999999999998765 5777777776554445555677777765

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.31  E-value=1.9e-07  Score=92.82  Aligned_cols=95  Identities=11%  Similarity=0.079  Sum_probs=54.3

Q ss_pred             cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHH
Q 023913          171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDA  243 (275)
Q Consensus       171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i  243 (275)
                      ....+++++|... .....+++  ++..|+++|++.+...+...    ......+-++|+||+|+...   +.+.+.+.+
T Consensus        75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~---~~~~~~~~l  151 (693)
T 2xex_A           75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA---NFEYSVSTL  151 (693)
T ss_dssp             EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC---CHHHHHHHH
T ss_pred             eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc---chHHHHHHH
Confidence            4455667777532 11122233  48999999998876543211    12235667899999999865   223333333


Q ss_pred             Hhc---CCCCCEEEEEecCCcCHHHHhccc
Q 023913          244 LRM---RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       244 ~~~---~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ++.   ++...++++|+  +.+++.+++++
T Consensus       152 ~~~l~~~~~~~~ipisa--~~~~~~l~d~l  179 (693)
T 2xex_A          152 HDRLQANAAPIQLPIGA--EDEFEAIIDLV  179 (693)
T ss_dssp             HHHHCCCEEESEEEECC--GGGCCEEEETT
T ss_pred             HHHhCCCceeEEeeccc--CCCcceeeeee
Confidence            332   33455778776  66666555543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.31  E-value=7.4e-09  Score=97.25  Aligned_cols=74  Identities=11%  Similarity=-0.054  Sum_probs=46.4

Q ss_pred             CceEEEEeCCCCCCccccc---cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          193 DYIIYIIDVSGGDKIPRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~---~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +..|+++|+ .........   ......+-++|+||+|+.+..  ..+ ..+.+.+.. +.+++++|+++++|++++++.
T Consensus       115 D~vllVvD~-~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~--~~~-~~~~l~~~~-g~~v~~vSAktg~gI~eL~~~  189 (423)
T 3qq5_A          115 DCGILVTDS-APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK--AEE-LKGLYESRY-EAKVLLVSALQKKGFDDIGKT  189 (423)
T ss_dssp             SEEEEECSS-SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC--CTH-HHHHSSCCT-TCCCCCCSSCCTTSTTTHHHH
T ss_pred             CEEEEEEeC-CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc--HHH-HHHHHHHHc-CCCEEEEECCCCCCHHHHHHH
Confidence            778889997 211111111   112355678999999998763  222 222232222 468999999999999999875


Q ss_pred             cc
Q 023913          270 TH  271 (275)
Q Consensus       270 ~~  271 (275)
                      +.
T Consensus       190 L~  191 (423)
T 3qq5_A          190 IS  191 (423)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.30  E-value=8.7e-07  Score=85.80  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-..++|+|+.|+|||||+|.|+|.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.28  E-value=2.2e-07  Score=90.00  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             cccccccChhHH-HHHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          171 ADLLLCESGGDN-LAANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       171 ~d~~~~eS~G~~-q~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                      ....+++++|-. --....|+|  +|..|+|+|+..|...+...    ......+-++++||+|+...
T Consensus       100 ~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          100 RVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL  167 (548)
T ss_dssp             EEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence            344566666642 122334454  39999999999998876532    22346677899999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.26  E-value=4.6e-07  Score=74.64  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAV  114 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~  114 (275)
                      +|++++|+||+|||||||+++|++.+++ . +.+...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            5899999999999999999999998764 2 555443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.26  E-value=1.6e-07  Score=78.64  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=34.8

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcE--EEEeccC
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI  118 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i--~i~~~d~  118 (275)
                      ....+|++++|+|++|||||||.++|++.+...|.+  .+++.++
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            344679999999999999999999999998744776  6665443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.25  E-value=3.1e-07  Score=75.89  Aligned_cols=36  Identities=25%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~  118 (275)
                      |++++|+||||||||||+++|++.  ..|.+.+.+.++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccch
Confidence            678999999999999999999872  236677776543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.24  E-value=5.4e-07  Score=78.47  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=48.2

Q ss_pred             CceEEEEeCCCC--CCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGG--DKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g--~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~  261 (275)
                      +..|+++|.+..  .....  .....       -..+-+||.||+|+.+.  ..++.+++..+.. .+.+++++||+++.
T Consensus       164 d~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~-~~~~~~e~SAk~g~  240 (255)
T 3c5h_A          164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE--RYIRDAHTFALSK-KNLQVVETSARSNV  240 (255)
T ss_dssp             CEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH--HHHHHHHHHHHTS-SSCCEEECBTTTTB
T ss_pred             CEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc--HHHHHHHHHHHhc-CCCeEEEEECCCCC
Confidence            678899997754  21111  11001       13455888999999765  3344444444332 35789999999999


Q ss_pred             CHHHHhcccc
Q 023913          262 GIIFTLSITH  271 (275)
Q Consensus       262 g~~~l~~~~~  271 (275)
                      |++++++.+.
T Consensus       241 gv~elf~~l~  250 (255)
T 3c5h_A          241 NVDLAFSTLV  250 (255)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999987653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.24  E-value=5.4e-07  Score=75.55  Aligned_cols=42  Identities=29%  Similarity=0.380  Sum_probs=36.1

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      .++.+++|+|++|||||||++.|.+.+++. |.+.+.+.|...
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            468999999999999999999999998876 788887766543

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.23  E-value=6.1e-07  Score=86.16  Aligned_cols=42  Identities=19%  Similarity=0.224  Sum_probs=35.5

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      +...+|+.++|+|||||||||||++|+++++|+ |.+.+.+..
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            334679999999999999999999999999998 777766543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.23  E-value=2e-07  Score=93.13  Aligned_cols=75  Identities=12%  Similarity=-0.089  Sum_probs=45.0

Q ss_pred             CceEEEEeCCCCCCcccc--cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhc----CCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPRK--GGPG---ITQADLLVINKTDLASAIGADLAVMERDALRM----RDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~--~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~----~~~~~ii~~S~~~~~g~  263 (275)
                      +-.++++|+..+......  ...+   ...+-++|+||+|+++..... ..+.+  .+.    .+..+++++|++++.|+
T Consensus       189 DlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~-~~il~--~~~~~l~lg~~~VV~iSA~~G~Gv  265 (772)
T 3zvr_A          189 CLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA-RDVLE--NKLLPLRRGYIGVVNRSQKDIDGK  265 (772)
T ss_dssp             EEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS-HHHHT--TCSSCCSSCEEECCCCCCEESSSS
T ss_pred             cEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh-HHHHH--HHhhhhhccCCceEEecccccccc
Confidence            456778887765432221  1111   235678999999998762221 12211  122    23467899999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++|++..
T Consensus       266 deL~eaI  272 (772)
T 3zvr_A          266 KDITAAL  272 (772)
T ss_dssp             EEHHHHH
T ss_pred             hhHHHHH
Confidence            8877643

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.7e-06  Score=70.88  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +...++|+|+.|||||||++.|++..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35689999999999999999999863

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.17  E-value=1.1e-06  Score=74.12  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .+|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            56999999999999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.17  E-value=4.8e-07  Score=78.12  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHH---hccCCC-CcEEEEec
Q 023913           80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAVTN  116 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~---g~l~~~-g~i~i~~~  116 (275)
                      ++++++|+|+||||||||+++|+   |+..++ |.+.+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            47899999999999999999999   887777 77765543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.16  E-value=2.4e-06  Score=79.55  Aligned_cols=30  Identities=23%  Similarity=0.132  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHH--HhccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLAL--CKFLRD  107 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L--~g~l~~  107 (275)
                      ..+|+++.|+||+|||||||++.|  .+++++
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~  206 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPL  206 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence            457999999999999999999955  455554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.15  E-value=6.4e-06  Score=74.31  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh-ccCCC-CcEEEEeccCCCCChHHHHHhccccCchh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g-~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (275)
                      .+.+.|.||+|+|||||+++|++ ++.++ |.+.+.+.++...  ......++++++..
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~~   92 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSPY   92 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeecccc
Confidence            33499999999999999999999 67777 8888877654321  12245567776653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.13  E-value=7.7e-07  Score=82.81  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=35.3

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      ..+.++|+||+|+...  ..++.+.+.....  +++++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~~~--~~l~~l~~~~~~~--~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAASD--EQIKRLVREEEKR--GYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSCH--HHHHHHHHHHHHT--TCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccch--HHHHHHHHHHhhc--CCcEEEEeccchhhHHHHHh
Confidence            3678999999998732  4455555444332  47899999999999987654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.12  E-value=1.7e-06  Score=74.12  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d  117 (275)
                      ..+|++++|.|++|||||||+++|+++   .|++.+.+.+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~   53 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEP   53 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecC
Confidence            356999999999999999999999998   5678877654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.09  E-value=1.7e-06  Score=72.99  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +|++++|+||+|||||||++.|++.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            589999999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.09  E-value=2.1e-06  Score=69.86  Aligned_cols=53  Identities=13%  Similarity=0.099  Sum_probs=37.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHH-hccccCch
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEE  136 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~  136 (275)
                      .+|++++|+|++|||||||++.|++.+   |.+.+.+.++..  ...+.+ ..|+.+|+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~   59 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND   59 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence            358999999999999999999999875   566666655432  112222 35666654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.05  E-value=2.8e-06  Score=76.82  Aligned_cols=40  Identities=28%  Similarity=0.440  Sum_probs=33.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC--CC-CcEEEEeccCCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTK  121 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~--~~-g~i~i~~~d~~~~  121 (275)
                      .+++|+|++|||||||+++|.+++.  ++ |++.++..|....
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~  135 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY  135 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence            3899999999999999999999987  45 7888887765433

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.04  E-value=2.7e-06  Score=69.62  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      +| +++|+|+||||||||+++|.+++.+.
T Consensus        26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~   53 (182)
T 3kta_A           26 KG-FTAIVGANGSGKSNIGDAILFVLGGL   53 (182)
T ss_dssp             SS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            45 99999999999999999999987765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.00  E-value=5e-05  Score=71.36  Aligned_cols=143  Identities=21%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI  157 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~  157 (275)
                      +..+++++|++|+||||+...|+..+...  .++.++..|+......+..+..+       ....+...+..........
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~-------~~~~l~v~~~~~~~dp~~i  171 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLA-------EQVGVDFFPSDVGQKPVDI  171 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHH-------HHHTCEECCCCSSSCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhc-------ccCCeeEEeCCCCCCHHHH
Confidence            35789999999999999999999776643  47888888875432211111000       0000000000000000111


Q ss_pred             HHHHHHHhhcccccccccccChhHH-----HHHHHH---HHhc-CceEEEEeCCCCCCcccccccccc--cc-CEEEEec
Q 023913          158 NLGPLEELSNLFKADLLLCESGGDN-----LAANFS---RELA-DYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLVINK  225 (275)
Q Consensus       158 ~~~~L~~l~~~~~~d~~~~eS~G~~-----q~~~la---ral~-~~~vlllD~t~g~d~~~~~~~~i~--~a-diivlNK  225 (275)
                      ....+..+ ....+|++++++.|..     ....++   ..+. +..++++|++.+.+..... ..+.  .. .-||+||
T Consensus       172 ~~~~l~~~-~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~-~~f~~~l~i~gvVlnK  249 (433)
T 2xxa_A          172 VNAALKEA-KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA-KAFNEALPLTGVVLTK  249 (433)
T ss_dssp             HHHHHHHH-HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH-HHHHHHSCCCCEEEEC
T ss_pred             HHHHHHHH-HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH-HHHhccCCCeEEEEec
Confidence            12244433 1246799999966631     122222   2223 6778889988775542211 1121  22 4579999


Q ss_pred             CCCCcc
Q 023913          226 TDLASA  231 (275)
Q Consensus       226 ~Dl~~~  231 (275)
                      +|....
T Consensus       250 ~D~~~~  255 (433)
T 2xxa_A          250 VDGDAR  255 (433)
T ss_dssp             TTSSSC
T ss_pred             CCCCcc
Confidence            998655

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.97  E-value=3.2e-06  Score=68.43  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.+++|+|++|||||||+++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.96  E-value=4.3e-06  Score=71.19  Aligned_cols=59  Identities=17%  Similarity=0.010  Sum_probs=39.0

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHH-hccCCCCcEEEEeccCCCCChHHHHHhccccCch
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALC-KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~-g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (275)
                      ..+|++++|+|+||||||||+..++ ...+..+++.++..+.....-.+..+.+|+.+|+
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~   79 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKP   79 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHH
Confidence            4679999999999999999966555 4444457787777654321112233456776654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.93  E-value=3.7e-06  Score=81.39  Aligned_cols=38  Identities=29%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C-cEEEEe
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT  115 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g-~i~i~~  115 (275)
                      ..+|++++|+|+||||||||+++|++.+.++ | .+.+..
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD  405 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD  405 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence            4579999999999999999999999999887 5 576443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.93  E-value=7.4e-07  Score=75.44  Aligned_cols=25  Identities=40%  Similarity=0.587  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.+++|+|++||||||+.++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.92  E-value=2.2e-06  Score=70.18  Aligned_cols=30  Identities=33%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      .+|+.++|.||||+|||||++++++.+.+.
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~   65 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEK   65 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            458999999999999999999999987643

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.92  E-value=7.9e-06  Score=74.92  Aligned_cols=57  Identities=21%  Similarity=0.095  Sum_probs=43.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCch
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (275)
                      ..+|.++.|.||+|||||||+..++..+.+. +++.++..+...  +..+.+++|+.+++
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~ra~rlgv~~~~  115 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPVYAKNLGVDLKS  115 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHHHHHHHTCCGGG
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chHHHHHcCCchhh
Confidence            3569999999999999999999999987766 778777655332  23456677876554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.90  E-value=7e-06  Score=76.19  Aligned_cols=45  Identities=11%  Similarity=0.127  Sum_probs=32.7

Q ss_pred             ccccCEEEEecCCC--CccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913          215 ITQADLLVINKTDL--ASAIGADLAVMERDALRMRDGGPFIFAQVGW  259 (275)
Q Consensus       215 i~~adiivlNK~Dl--~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~  259 (275)
                      ...+-++++|+.|.  .......++.+++++.+.+|+++++++|++.
T Consensus       223 t~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          223 TAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             ccCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            35677889999873  2011245777888888877889999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.90  E-value=1.1e-06  Score=75.94  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~  118 (275)
                      ..+|  ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus        48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~   85 (254)
T 1ixz_A           48 IPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF   85 (254)
T ss_dssp             CCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred             CCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHH
Confidence            3446  99999999999999999999864 45666665543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.89  E-value=5.2e-06  Score=72.68  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ...++|+|..|+|||||++.|++.
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999985

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.89  E-value=1.2e-06  Score=76.97  Aligned_cols=37  Identities=32%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~  118 (275)
                      .+|  ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus        73 ~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~  109 (278)
T 1iy2_A           73 PKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF  109 (278)
T ss_dssp             CCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred             CCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence            446  99999999999999999999864 46666665544

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.86  E-value=7.8e-06  Score=67.17  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      ++.....+|.++.|+|++||||||+.+.|+..+.+. +.+.+..
T Consensus         5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A            5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            334445579999999999999999999999988765 5665543

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.86  E-value=3.1e-05  Score=70.50  Aligned_cols=150  Identities=15%  Similarity=0.098  Sum_probs=80.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHH
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~  156 (275)
                      ..+|+++.|.|++|+|||||+..++...... +.+.++..+..   ..++..++-.         ...+.          
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms---~~ql~~Rlls---------~~~~v----------  100 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS---AEQLALRALS---------DLTSI----------  100 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC---HHHHHHHHHH---------HHHCC----------
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHH---------HhhCC----------
Confidence            4679999999999999999998888755434 67888776543   3333332100         00000          


Q ss_pred             HHHHHHHHhhcccccccccccChhHHHHHHHHHHhc-CceEEEEeCCC-CCC-ccccccc---cccccCEEEEecCCCCc
Q 023913          157 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIIDVSG-GDK-IPRKGGP---GITQADLLVINKTDLAS  230 (275)
Q Consensus       157 ~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~-~~~vlllD~t~-g~d-~~~~~~~---~i~~adiivlNK~Dl~~  230 (275)
                          .+..+..   ...    +.++.+++..|...+ +.+++|.|.+. ..+ ...+...   .....++||+.-..++.
T Consensus       101 ----~~~~l~~---g~L----s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~  169 (338)
T 4a1f_A          101 ----NMHDLES---GRL----DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS  169 (338)
T ss_dssp             ----CHHHHHH---TCC----CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred             ----CHHHHhc---CCC----CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence                0111100   012    677777777766655 66777777432 111 1111111   11135677766544443


Q ss_pred             cc------hhhHHHHHHHHHhcCC--CCCEEEEEecCC
Q 023913          231 AI------GADLAVMERDALRMRD--GGPFIFAQVGWV  260 (275)
Q Consensus       231 ~~------~~~~~~~~~~i~~~~~--~~~ii~~S~~~~  260 (275)
                      ..      ..++..+...++.+..  +.+|+.+|..+.
T Consensus       170 ~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R  207 (338)
T 4a1f_A          170 GSKATKERHEQIAEISRELKTLARELEIPIIALVQLNR  207 (338)
T ss_dssp             THHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            21      1233444444443322  688999887553

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=9.1e-06  Score=67.74  Aligned_cols=35  Identities=23%  Similarity=0.161  Sum_probs=24.6

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+.++...++.+++|+|++||||||+.+.|++.+
T Consensus        15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            33444445679999999999999999999999876

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.79  E-value=2.9e-06  Score=74.11  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=31.7

Q ss_pred             CCCCccccccccCC---CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           67 RRAPPILSRNFNER---AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        67 ~~~~~~~~~~~~~~---geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...++.+.++...+   |++++|+|++||||||+.++|++.+.
T Consensus        31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            44455555555666   99999999999999999999999653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.76  E-value=1.2e-05  Score=65.64  Aligned_cols=31  Identities=35%  Similarity=0.407  Sum_probs=26.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g  109 (275)
                      .+|.+++|+|++||||||+.+.|.+.+.+.|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g   33 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG   33 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence            3589999999999999999999999876554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.76  E-value=1.6e-05  Score=79.08  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             cccccChhHH-HHHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCcc
Q 023913          173 LLLCESGGDN-LAANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (275)
Q Consensus       173 ~~~~eS~G~~-q~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~  231 (275)
                      ..+++|+|-. --....|+|  +|..|+|+|+..|...+...    ......+-+++|||+|+...
T Consensus        87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred             EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence            4456677732 123334444  49999999999998876532    12235677999999998644

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.76  E-value=5.2e-05  Score=69.22  Aligned_cols=40  Identities=23%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      .+|+++.|.|++|||||||+..++...... +++.++..+.
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            479999999999999999988888655444 7788877654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.75  E-value=2.6e-05  Score=65.11  Aligned_cols=36  Identities=33%  Similarity=0.583  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d  117 (275)
                      .++.+++|+|++|||||||.+.|.+.++   .+.++..|
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~~~~i~~D   54 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP---NCSVISQD   54 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST---TEEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC---CcEEEeCC
Confidence            3488999999999999999999999764   34444433

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.70  E-value=0.00018  Score=67.78  Aligned_cols=42  Identities=17%  Similarity=0.205  Sum_probs=35.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC-CC-cEEEEeccCC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIF  119 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g-~i~i~~~d~~  119 (275)
                      ..+|+++.|.|++|+|||||+..++....+ .| .+.++..+..
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            567999999999999999999999987665 35 7888886653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.69  E-value=2.4e-05  Score=64.47  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      -++++|+|++|||||||++.|++.+.+. .++.++..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            5789999999999999999999987655 56766666543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.68  E-value=1.3e-05  Score=69.83  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-.++|+|..|+|||||++.|++.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999985

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.64  E-value=2.5e-05  Score=72.99  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+|+++||++|+     +|+++||| |++++|...
T Consensus       335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~  372 (430)
T 1w1w_A          335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN  372 (430)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH
T ss_pred             CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH
Confidence            999999999999997     58999999 888998654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.59  E-value=3.6e-06  Score=76.16  Aligned_cols=24  Identities=38%  Similarity=0.448  Sum_probs=23.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.++|.||||+|||||+++|++.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            789999999999999999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.58  E-value=7.4e-05  Score=63.99  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .+|.+++|.|++||||||+++.|...+.+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            36899999999999999999999998876

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.57  E-value=3.4e-05  Score=70.80  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             ChhHHHHHHHHHHhc----------CceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA----------DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~----------~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+|++++|++|+          +|+|+||| |++++|...
T Consensus       267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~  309 (359)
T 2o5v_A          267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHR  309 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHH
Confidence            999999999999987          69999999 888998754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.57  E-value=3.4e-05  Score=64.30  Aligned_cols=23  Identities=30%  Similarity=0.684  Sum_probs=21.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .+++|+|++||||||+.++|+++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            37999999999999999999984

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.56  E-value=1.2e-05  Score=81.54  Aligned_cols=59  Identities=24%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             cccccccChhHHH-HHHHHHHh--cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCC
Q 023913          171 ADLLLCESGGDNL-AANFSREL--ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLA  229 (275)
Q Consensus       171 ~d~~~~eS~G~~q-~~~laral--~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~  229 (275)
                      ....++++.|+.. .....+++  ++..|+++|++.+...+...    ......+-++++||+|+.
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            4455667777532 11222333  48999999999886544321    111245668999999986

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.55  E-value=3.8e-05  Score=74.13  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      +..+|+.++|+||||+|||||+++|++.+.+. +.+.+.+
T Consensus       104 ~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          104 KSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             SSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            33479999999999999999999999998766 6665433

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.53  E-value=5.4e-05  Score=62.13  Aligned_cols=39  Identities=18%  Similarity=0.121  Sum_probs=32.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      -.+++|+|++|||||||++.|+..+... .++.++..+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            4689999999999999999999988766 57888876654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.52  E-value=4.3e-05  Score=63.81  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=25.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+|.+++|+||+|||||||.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45688999999999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.51  E-value=4.5e-05  Score=63.32  Aligned_cols=21  Identities=24%  Similarity=0.601  Sum_probs=20.4

Q ss_pred             EEEEEcCCcchHHHHHHHHHh
Q 023913           83 TVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.48  E-value=5.6e-05  Score=60.44  Aligned_cols=24  Identities=29%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..+.+|+|||||||||||.+|.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999854

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.44  E-value=4.4e-05  Score=70.50  Aligned_cols=30  Identities=27%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ....+|++++|+||||||||||+++|++.+
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345679999999999999999999999964

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.43  E-value=4.4e-05  Score=64.10  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-C
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y  109 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g  109 (275)
                      ...+|.+++|+|++||||||+.+.|.+.+.|. |
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g   54 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR   54 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence            34569999999999999999999999988755 5

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.42  E-value=4.1e-05  Score=74.76  Aligned_cols=55  Identities=18%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC--CcEEEEeccC
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDI  118 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~--g~i~i~~~d~  118 (275)
                      .|+...++.........|+.++|+||||+|||||+++|++++++.  +.+.+.++..
T Consensus        43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~   99 (604)
T 3k1j_A           43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE   99 (604)
T ss_dssp             CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred             EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence            455555665666667789999999999999999999999998876  5566555544

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=97.35  E-value=0.00012  Score=58.55  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             cccccc-ChhHHHHHHHH------HHhc-CceEEEEe-CCCCCCccc
Q 023913          172 DLLLCE-SGGDNLAANFS------RELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       172 d~~~~e-S~G~~q~~~la------ral~-~~~vlllD-~t~g~d~~~  209 (275)
                      ++.+.+ |+||+||+++|      |+++ +|+++|+| |++++|...
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~   98 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER   98 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH
Confidence            344455 99999999876      7777 79999999 899998754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.33  E-value=0.00079  Score=60.24  Aligned_cols=40  Identities=25%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      ..+|+++.|.|++|+|||||+..++...... ..+.++..+
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            4679999999999999999998887543333 567777755

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.33  E-value=8.8e-05  Score=61.58  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+++|+|++|||||||.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999876

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.32  E-value=3.4e-05  Score=70.94  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++..++++|.+|+|||||+|.|++..
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhhh
Confidence            45679999999999999999999964

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.30  E-value=4.3e-05  Score=69.24  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             EEEEcCCcchHHHHHHHHHhcc
Q 023913           84 VGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.|+|..|+|||||++.+.+-.
T Consensus         2 IvllGdsgvGKTSLl~~~~~~~   23 (331)
T 3r7w_B            2 VLLMGVRRCGKSSICKVVFHNM   23 (331)
T ss_dssp             EEEECSTTSSTTHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6899999999999999876643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.29  E-value=0.0001  Score=60.01  Aligned_cols=26  Identities=31%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +|.+++|+|++||||||+.+.|+..+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.29  E-value=0.00014  Score=69.45  Aligned_cols=54  Identities=30%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE  135 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (275)
                      .+|  +.|+||||+|||||+++|++... .+.+.+.+.++.........+++..+++
T Consensus        64 p~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq  117 (499)
T 2dhr_A           64 PKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE  117 (499)
T ss_dssp             CSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred             Cce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence            445  99999999999999999999864 3567777766654322223333444444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.28  E-value=0.00012  Score=58.48  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+++|+|++||||||+.+.|+..+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999988653

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.20  E-value=0.00026  Score=65.47  Aligned_cols=49  Identities=16%  Similarity=0.020  Sum_probs=38.4

Q ss_pred             ccccccCCCCCCCCCCcc--------------ccccccCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           55 SHEPIYSPGYFSRRAPPI--------------LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++.+.||.   .+..+.              +..+...+|+.++|+|++|+|||||++.|++.+.
T Consensus       137 e~ltp~yP~---er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          137 ENLTPLHAN---SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TTSCEESCC---SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             ccccccCCC---CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            566677877   555554              3445567899999999999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.19  E-value=0.00021  Score=57.77  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.++.|+|++||||||+.+.|...+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.19  E-value=0.00041  Score=57.37  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSL  111 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i  111 (275)
                      ++.+++|.|++||||||+.+.|...+...|.+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~   34 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV   34 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence            46789999999999999999999977654544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.18  E-value=0.00019  Score=60.27  Aligned_cols=24  Identities=29%  Similarity=0.160  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..+.+|+|||||||||++.+|.-.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHH
Confidence            359999999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.17  E-value=0.00026  Score=58.08  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .++.+++|+|++||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999999986

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.15  E-value=0.00021  Score=60.95  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=24.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..++.+++|+|++||||||+.+.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3458899999999999999999999854

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.14  E-value=0.0006  Score=69.51  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             HHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-Cce--EEEEe-CCCCCCccc
Q 023913          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYI--IYIID-VSGGDKIPR  209 (275)
Q Consensus       159 ~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~--vlllD-~t~g~d~~~  209 (275)
                      .+.|..+++.+ ..++.+.+ |+||+||+.||++|+ +|.  ++||| |++++|...
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~  501 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD  501 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH
Confidence            44566665543 35677777 999999999999998 554  99999 899998654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.08  E-value=0.00036  Score=57.51  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +|.+++|+|+.||||||+.+.|...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.08  E-value=0.00011  Score=61.15  Aligned_cols=31  Identities=32%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEE
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i  113 (275)
                      +++|.|++||||||+++.|...+... ..+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~   33 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT   33 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            68999999999999999999987654 34433

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.08  E-value=0.00026  Score=65.61  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..+..++|+|+||+|||||+|+|++.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45778999999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.08  E-value=0.00027  Score=56.23  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=18.7

Q ss_pred             cEEEEEcCCcchHHHHHHHH
Q 023913           82 FTVGIGGPVGTGKTALMLAL  101 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L  101 (275)
                      .+++|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.07  E-value=0.00027  Score=57.45  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      +.++.|.|++||||||+.+.|...+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            568999999999999999999986543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.06  E-value=0.00029  Score=57.48  Aligned_cols=26  Identities=35%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.++.|+|++||||||+.+.|...+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998755

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.05  E-value=0.00028  Score=57.97  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +++|.|++||||||+.+.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.03  E-value=6.2e-05  Score=67.82  Aligned_cols=49  Identities=29%  Similarity=0.347  Sum_probs=34.3

Q ss_pred             CccccccccCCCcE--EEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           70 PPILSRNFNERAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        70 ~~~~~~~~~~~gei--v~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      ++.........|++  +.|.||+|+||||+++++++.+.+. ++..+...+.
T Consensus        33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   84 (340)
T 1sxj_C           33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA   84 (340)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence            33333344455666  9999999999999999999987655 5544444443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.98  E-value=0.00045  Score=57.94  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +.+++|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999988

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.97  E-value=0.00032  Score=60.65  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++.++.|+|++||||||+.+.|+..+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4478999999999999999999998764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.96  E-value=0.0024  Score=57.49  Aligned_cols=38  Identities=13%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHH-hccCC--CCcEEEEecc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALC-KFLRD--KYSLAAVTND  117 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~-g~l~~--~g~i~i~~~d  117 (275)
                      .+| ++-|.||+|+|||||.-.++ ...+.  .+++.++..+
T Consensus        27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E   67 (333)
T 3io5_A           27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE   67 (333)
T ss_dssp             CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            457 89999999999999965554 44333  4566666544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.95  E-value=0.00044  Score=56.54  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.94  E-value=0.00046  Score=55.49  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=20.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHh
Q 023913           82 FTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999997

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.92  E-value=0.00053  Score=56.38  Aligned_cols=25  Identities=28%  Similarity=0.626  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      +..+++|+|++||||||+.+.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999999986

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.92  E-value=0.00035  Score=56.49  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.91  E-value=0.00045  Score=57.43  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.0

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.|+||+|||||||++.|+...+
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999987654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.91  E-value=0.00045  Score=57.30  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++.+++|+|++||||||+.+.|...+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999998654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.89  E-value=0.0016  Score=66.56  Aligned_cols=49  Identities=16%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             HHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-C--ceEEEEe-CCCCCCccc
Q 023913          161 PLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       161 ~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~--~~vlllD-~t~g~d~~~  209 (275)
                      .|..+++.+ .+++.+.+ |+||+||+.||++|. +  |.++||| ||+++|...
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~  541 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD  541 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGG
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHH
Confidence            456666554 36777777 999999999999998 5  5899999 899998654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.89  E-value=0.00045  Score=59.90  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+++|+||+|||||||-+.|++.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            3789999999999999999998653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.87  E-value=0.00044  Score=56.13  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.87  E-value=0.00066  Score=60.38  Aligned_cols=77  Identities=21%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CceEEEEeCCCCCC---cccccccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          193 DYIIYIIDVSGGDK---IPRKGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      +..|+++|.+...-   ...+....   ...+-+||+||+||.+.  ...+++.+.+.......+++++||++++|++++
T Consensus        86 d~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~--~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~l  163 (301)
T 1u0l_A           86 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL  163 (301)
T ss_dssp             CEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc--hhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHH
Confidence            67888899764321   11111111   13455889999999865  232334444443322278999999999999999


Q ss_pred             hcccc
Q 023913          267 LSITH  271 (275)
Q Consensus       267 ~~~~~  271 (275)
                      +.+..
T Consensus       164 f~~l~  168 (301)
T 1u0l_A          164 KEYLK  168 (301)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            97653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.87  E-value=0.00052  Score=55.80  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.++.|+|++||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999998765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.86  E-value=0.00053  Score=56.92  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++.+++|+|+.||||||+.+.|...+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999998654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.86  E-value=0.0067  Score=56.72  Aligned_cols=41  Identities=15%  Similarity=0.070  Sum_probs=32.5

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCC-C-CcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~-g~i~i~~~d~  118 (275)
                      ..+|+++.|.|++|+|||||...++..... . ..+.++..+.
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~  239 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM  239 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            457999999999999999999888875543 3 4677777653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.86  E-value=0.001  Score=56.33  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIF  119 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~~  119 (275)
                      +|.++.|.|+.||||||+++.|...+...| .+. ...++.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~-~~~~p~   44 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ-LTREPG   44 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE-EEESSC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc-cccCCC
Confidence            588999999999999999999999887664 443 334444

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.86  E-value=0.0017  Score=65.66  Aligned_cols=49  Identities=20%  Similarity=0.226  Sum_probs=38.2

Q ss_pred             HHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913          161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR  209 (275)
Q Consensus       161 ~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~  209 (275)
                      .|..+++.+. .++.+.+ |+||+||+.||++|+ +|  .++||| ||+++|...
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~  416 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD  416 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence            4555555432 5666777 999999999999999 66  699999 899997643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.84  E-value=0.00069  Score=62.21  Aligned_cols=36  Identities=14%  Similarity=-0.045  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      .+.-++|+|++|||||||++.|+..+.+. +++.+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            46678999999999999999999877666 6776664

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.84  E-value=0.00069  Score=60.35  Aligned_cols=77  Identities=14%  Similarity=-0.026  Sum_probs=48.9

Q ss_pred             CceEEEEeCCCCC-Ccc--cccccc---ccccCEEEEecCCCCccchhh-HHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGD-KIP--RKGGPG---ITQADLLVINKTDLASAIGAD-LAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~-d~~--~~~~~~---i~~adiivlNK~Dl~~~~~~~-~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|.+... ...  .++...   ...+-+||+||+|+.+..... .+.+.+..+++  +.+++++|+++++|+++
T Consensus        81 D~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~--g~~~~~~SA~~g~gi~~  158 (302)
T 2yv5_A           81 DRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA--GYDVLKVSAKTGEGIDE  158 (302)
T ss_dssp             CEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT--TCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence            6678888976432 111  111111   234568999999998752101 34444444444  46899999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      ++++..
T Consensus       159 L~~~l~  164 (302)
T 2yv5_A          159 LVDYLE  164 (302)
T ss_dssp             HHHHTT
T ss_pred             HHhhcc
Confidence            998654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.83  E-value=0.00051  Score=55.80  Aligned_cols=26  Identities=19%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      ++.|.|++||||||+.+.|...+...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999876543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.81  E-value=0.00067  Score=55.15  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.80  E-value=0.00088  Score=54.49  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +++|+|+.||||||+.+.|...+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998664

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.79  E-value=0.0007  Score=56.86  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.77  E-value=0.00053  Score=55.46  Aligned_cols=27  Identities=37%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++.++.|+|++||||||+.+.|...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            467899999999999999999987543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.75  E-value=0.00072  Score=55.36  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.+++|+|++||||||+.+.|+..+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998865

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.74  E-value=0.00042  Score=66.25  Aligned_cols=32  Identities=19%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             ChhHHHHHHHHHHhc-Cc--eEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-~~--~vlllD-~t~g~d~~~  209 (275)
                      |+||+||++||++++ +|  +++|+| |++|+|...
T Consensus       399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~  434 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA  434 (517)
T ss_dssp             CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH
Confidence            999999999999998 88  999999 999998653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.74  E-value=0.00067  Score=58.40  Aligned_cols=25  Identities=36%  Similarity=0.715  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+++|.||+||||||+.+.|+..+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999999754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.72  E-value=0.0011  Score=60.84  Aligned_cols=23  Identities=43%  Similarity=0.601  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +..++|+|.+|+|||||+|.|++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~   24 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTK   24 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35789999999999999999998

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.72  E-value=0.00075  Score=55.68  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +++|+|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.68  E-value=0.0008  Score=59.50  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.++.|+||+||||||+.+.|+..+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999999998764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.68  E-value=0.0013  Score=55.75  Aligned_cols=41  Identities=22%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC--cEEEEeccCCCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY--SLAAVTNDIFTK  121 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g--~i~i~~~d~~~~  121 (275)
                      +|.++.|.|+.||||||+++.|...+...|  .+ +...+++..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~~t   44 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPGGT   44 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCCCC
Confidence            478999999999999999999999887654  34 444455443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.67  E-value=0.0012  Score=54.53  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +..+++|+|++||||||+.+.|+..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.65  E-value=0.00099  Score=56.26  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.+++|+|++||||||+.+.|+..+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999999754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.64  E-value=0.0043  Score=56.61  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      ..+|.++.|.|++|+|||||...++...... +++.++..+.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3479999999999999999998888755434 6777776543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.64  E-value=0.0011  Score=54.69  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +-+++|+|++||||||+.+.|+..+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.63  E-value=0.00093  Score=55.74  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997754

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.63  E-value=0.0016  Score=58.38  Aligned_cols=41  Identities=20%  Similarity=0.104  Sum_probs=31.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhcc-CC------CCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l-~~------~g~i~i~~~d~  118 (275)
                      ..+|.++.|.|++|+|||||...++... .+      .+++.++..+.
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            3569999999999999999999888743 34      45666666553

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.62  E-value=0.00077  Score=61.59  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=24.9

Q ss_pred             ccCCCcE--EEEEcCCcchHHHHHHHHHhccC
Q 023913           77 FNERAFT--VGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        77 ~~~~gei--v~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...+|++  ++|+|++||||||+.++|++.+.
T Consensus        18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3445666  99999999999999999998654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.62  E-value=0.0011  Score=55.38  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.59  E-value=0.00083  Score=54.58  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+++|+|++||||||+-+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.59  E-value=0.001  Score=54.02  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+++|+|++||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.56  E-value=0.001  Score=60.76  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=26.2

Q ss_pred             ChhHHHHHH------HHHHhc-C-ceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAAN------FSRELA-D-YIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~------laral~-~-~~vlllD-~t~g~d~~~  209 (275)
                      |+||+|++.      +|++++ + |+++|+| |++++|...
T Consensus       282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~  322 (371)
T 3auy_A          282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR  322 (371)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence            999999885      456666 7 9999999 888988643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.56  E-value=0.00098  Score=56.02  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.56  E-value=0.00097  Score=53.38  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+++|+|++||||||+.+.|...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.55  E-value=0.0012  Score=52.65  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +++|+|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998854

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.55  E-value=0.0012  Score=52.85  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      -.+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.52  E-value=0.002  Score=53.12  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i  113 (275)
                      ..+.|.||+|+|||||++.++..+... ..+.+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~   87 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI   87 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            689999999999999999999876554 44443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.52  E-value=0.0016  Score=54.41  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV  114 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~  114 (275)
                      .+..+.|.||+|+|||||++.++..+... ..+.+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~   86 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI   86 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            57889999999999999999999876543 344443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.49  E-value=0.0021  Score=56.49  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN  116 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~  116 (275)
                      ...+.|.||+|+|||||.+.|++.+... +.+.....
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~   83 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   83 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeec
Confidence            3579999999999999999999988766 55554443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.48  E-value=0.0043  Score=55.87  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=24.1

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      .+.|.||+|+|||||++.+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            89999999999999999999987664

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=96.47  E-value=0.0014  Score=53.73  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             ChhHHHHHHHHHHhc-----CceEEEEe-CCCCCCccc
Q 023913          178 SGGDNLAANFSRELA-----DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       178 S~G~~q~~~laral~-----~~~vlllD-~t~g~d~~~  209 (275)
                      |+||+|+++||++|+     .|+++||| |++++|...
T Consensus        66 SgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~  103 (173)
T 3kta_B           66 SGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN  103 (173)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             CHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH
Confidence            999999999999996     35899999 889998643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.47  E-value=0.0014  Score=56.33  Aligned_cols=24  Identities=42%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+|||||+++|++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC
Confidence            388999999999999999999764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.47  E-value=0.002  Score=55.42  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccCCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT  120 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~~~  120 (275)
                      +|.++.|.|++||||||+++.|...+...| .+.+...++..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~   67 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG   67 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence            488999999999999999999999877553 32333344443

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.46  E-value=0.0016  Score=56.37  Aligned_cols=27  Identities=26%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++.++.|+|++||||||+.+.|...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999998654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.43  E-value=0.0014  Score=56.18  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .+|.++.|.|+.||||||+++.|...+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999987753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.43  E-value=0.0017  Score=55.27  Aligned_cols=27  Identities=22%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+..++.|+||+||||+|.-+.|+..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.40  E-value=0.0018  Score=53.94  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      -.+++|+|+.||||||+.+.|...+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.39  E-value=0.0083  Score=52.24  Aligned_cols=73  Identities=8%  Similarity=0.021  Sum_probs=48.6

Q ss_pred             CceEEEEeCCCCCCccc-cccccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          193 DYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-~~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      +..+.|+|+........ ... .+..+-++|+||+||++.  ...+...+.+++.  +.++ ++|++++.|++++++.+.
T Consensus        23 D~vl~VvDar~P~~~~~~~l~-ll~k~~iivlNK~DL~~~--~~~~~~~~~~~~~--g~~v-~iSa~~~~gi~~L~~~l~   96 (262)
T 3cnl_A           23 NTVVEVRDARAPFATSAYGVD-FSRKETIILLNKVDIADE--KTTKKWVEFFKKQ--GKRV-ITTHKGEPRKVLLKKLSF   96 (262)
T ss_dssp             SEEEEEEETTSTTTTSCTTSC-CTTSEEEEEEECGGGSCH--HHHHHHHHHHHHT--TCCE-EECCTTSCHHHHHHHHCC
T ss_pred             CEEEEEeeCCCCCcCcChHHH-hcCCCcEEEEECccCCCH--HHHHHHHHHHHHc--CCeE-EEECCCCcCHHHHHHHHH
Confidence            78888999654322211 111 125667899999999976  4444444455442  4567 999999999999987654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.37  E-value=0.0021  Score=55.14  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998754

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.37  E-value=0.0026  Score=60.79  Aligned_cols=42  Identities=12%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHh--ccCCC-CcEEEEeccCCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g--~l~~~-g~i~i~~~d~~~  120 (275)
                      .+++-+.|.|.+||||||+|+.|+.  ++..+ +.+.+...|+..
T Consensus       165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            4588999999999999999999886  44555 788888878764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.37  E-value=0.0016  Score=54.75  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +-+++|+|++||||||+.+.|+..+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.36  E-value=0.0017  Score=54.93  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.36  E-value=0.0019  Score=55.62  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -.+++|+|+.||||||+.+.|...+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45899999999999999999988543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.35  E-value=0.00088  Score=59.37  Aligned_cols=38  Identities=13%  Similarity=0.353  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      +..+++|.|+.||||||+.+.|...+... .++.++..|
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D   42 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence            46789999999999999999998855422 224444433

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.33  E-value=0.0018  Score=59.49  Aligned_cols=49  Identities=12%  Similarity=0.150  Sum_probs=30.8

Q ss_pred             cccCEEEEecCCC--Ccc-chhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          216 TQADLLVINKTDL--ASA-IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       216 ~~adiivlNK~Dl--~~~-~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      ..+-+++.||+|.  .+. ....++.+++..++.  +++++++||+..+++.++
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~--g~~vv~iSAk~E~el~eL  252 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE--GAEVVVVSARLEAELAEL  252 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH--TCEEEEECHHHHHHHHTS
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHc--CCeEEEeechhHHHHHHh
Confidence            3567888999873  321 014456666655544  478999999875555443

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.30  E-value=0.0023  Score=54.30  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++..+.|+|++||||||+.+.|+..+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.29  E-value=0.0063  Score=53.60  Aligned_cols=73  Identities=14%  Similarity=0.025  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc-cccccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          193 DYIIYIIDVSGGDKIPR-KGGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~-~~~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +..+.|+|+........ .....+ ..+-++|+||+||++.  ...+...+.+++  .+.+++++|++++.|++++++.
T Consensus        25 DvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~--~~~~~~~~~~~~--~g~~~i~iSA~~~~gi~~L~~~   99 (282)
T 1puj_A           25 DIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA--AVTQQWKEHFEN--QGIRSLSINSVNGQGLNQIVPA   99 (282)
T ss_dssp             SEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH--HHHHHHHHHHHT--TTCCEEECCTTTCTTGGGHHHH
T ss_pred             CEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCH--HHHHHHHHHHHh--cCCcEEEEECCCcccHHHHHHH
Confidence            77888999754432211 111111 4566899999999875  444444444433  2458999999999999888763

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.29  E-value=0.0042  Score=56.17  Aligned_cols=41  Identities=24%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhc--cCC-----CCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKF--LRD-----KYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~--l~~-----~g~i~i~~~d~  118 (275)
                      ..+|+++.|.|++|+|||||+..++..  +++     .+++.++..+.
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            457999999999999999999998874  322     35676666553

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.27  E-value=0.0019  Score=54.02  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999998854

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.26  E-value=0.012  Score=53.78  Aligned_cols=40  Identities=28%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC-CCcEEEEeccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDI  118 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g~i~i~~~d~  118 (275)
                      .+|.++.|.|++|+|||||...++..... .+.+.++..+.
T Consensus        72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            56999999999999999999877765433 36788877664

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.25  E-value=0.0019  Score=64.85  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..++.++|+||+||||||++..++....
T Consensus       107 ~~~~~vii~gpTGSGKTtllp~ll~~~~  134 (773)
T 2xau_A          107 QNNQIMVFVGETGSGKTTQIPQFVLFDE  134 (773)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             hCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4578999999999999999988876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.25  E-value=0.0027  Score=56.12  Aligned_cols=28  Identities=32%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+..+.|.||+|+|||||.+++++.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4577899999999999999999999753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.24  E-value=0.042  Score=44.80  Aligned_cols=132  Identities=13%  Similarity=0.100  Sum_probs=67.3

Q ss_pred             EEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHHH
Q 023913           83 TVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        83 iv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      +++|. +.-|+||||+.-.|+..+... .++.++..|+.. ....+...   -+..         ........  ....+
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~-~~~~~~~~---~~~~---------~~~~~~~~--~~l~~   67 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM-SLTNWSKA---GKAA---------FDVFTAAS--EKDVY   67 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHTT---SCCS---------SEEEECCS--HHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC-CHHHHHhc---CCCC---------CcEEecCc--HHHHH
Confidence            56666 678899999999998877655 578888877542 11111110   0000         00000000  11223


Q ss_pred             HHHHhhccccccccccc-ChhHHHHHHHHHHhcCceEEEEeCCCCCCcccccccccc--------ccCEEEEecCCCCcc
Q 023913          161 PLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGIT--------QADLLVINKTDLASA  231 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~--------~adiivlNK~Dl~~~  231 (275)
                      .++.+  ...+|+++++ +++.......+...++..|+++.|.............++        ..-.+|+|+++....
T Consensus        68 ~l~~l--~~~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~  145 (206)
T 4dzz_A           68 GIRKD--LADYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT  145 (206)
T ss_dssp             THHHH--TTTSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred             HHHHh--cCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence            44444  2358999999 444422222222334778888876544311111111111        111789999985443

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.23  E-value=0.0025  Score=52.47  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC-CCCcEEEEe
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVT  115 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~-~~g~i~i~~  115 (275)
                      +|.++.|.|+.||||||++..++..+. ...++.+..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~   38 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK   38 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            478999999999999999855544332 234565554

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.21  E-value=0.0053  Score=51.52  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEF  126 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~  126 (275)
                      |.+++|=|.-||||||+++.|...+.....+. ...+++....++.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~-~~~eP~~t~~g~~   46 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI-MTREPGGVPTGEE   46 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE-EEESSTTCHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE-EeeCCCCChHHHH
Confidence            56889999999999999999999876434443 3344544333333

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.16  E-value=0.0028  Score=54.06  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC-CC-cEEEEeccCCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFT  120 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g-~i~i~~~d~~~  120 (275)
                      .+|.++.|.|+.||||||+.+.|...+.. .| ++.+...+++.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            35889999999999999999999998776 43 44442445543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.15  E-value=0.0026  Score=55.95  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..+++|+|++||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.13  E-value=0.0026  Score=53.49  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ++.|+||+||||+|.-+.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999865

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.10  E-value=0.054  Score=46.40  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CCcEEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           80 RAFTVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        80 ~geiv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      ++.+++|. +.-|+||||+.-.|+..+. . .++.++..|+..
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~   67 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA   67 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            46777774 6778999999999998888 6 689999888753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0025  Score=58.67  Aligned_cols=24  Identities=29%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..|+|+|++++|||||||.|++.-
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.06  E-value=0.0042  Score=49.53  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ....+.|.|++|+|||||++.++..+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999998653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0029  Score=56.72  Aligned_cols=29  Identities=34%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      ..+..+.|.||+|+|||||++.+++.+.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34789999999999999999999997654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.04  E-value=0.0086  Score=50.74  Aligned_cols=29  Identities=34%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .+|.++.|.|+.||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36889999999999999999999998765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.03  E-value=0.0036  Score=53.28  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.+++|.|..||||||+.+.|...+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999998764

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.00  E-value=0.0039  Score=52.90  Aligned_cols=25  Identities=28%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      .+|+.++|.|++||||||++..++-
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            4589999999999999998877654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.00  E-value=0.0035  Score=59.86  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .+| +.+|+|+|||||||||.+|..+
T Consensus        59 ~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           59 GGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             CCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            446 9999999999999999999665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	3e-25
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	4e-18
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	2e-07
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	0.001
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.003
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score =   99 bits (248), Expect = 3e-25
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 6/199 (3%)

Query: 75  RNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGAL 133
                RA  VGI G  G GK+  + AL   L    + +A +  D  +   G  ++ +   
Sbjct: 45  LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 104

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLE--ELSNLFKADLLLCESGGDNLAANFSREL 191
                        P  +      +     E   L      D++L E+ G   +     +L
Sbjct: 105 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADL 164

Query: 192 ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGP 251
            D+ + ++    GD++          AD++ +NK D         A        +    P
Sbjct: 165 TDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTP 224

Query: 252 FIFAQVGWVIGIIFTLSIT 270
                  W   ++    + 
Sbjct: 225 ---PSATWTPPVVTISGLH 240

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 80.7 bits (198), Expect = 4e-18
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 4/171 (2%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEE-- 136
               +G+ G  G GK+  + A    L  +   +A +  D  +   G  ++ +     +  
Sbjct: 53  NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYII 196
           R  A      P +      S     L  L      D+++ E+ G   +      + D  I
Sbjct: 113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFI 172

Query: 197 YIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALRM 246
            +    GGD +       +  ADL+VINK D  +     +A      AL +
Sbjct: 173 SLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHI 223

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 30/185 (16%), Positives = 49/185 (26%), Gaps = 22/185 (11%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-------DGEFLMRNGALPEE 136
           V   G  G+GKT L     ++L D Y +A V  D   KE       D    +    +  E
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDN------LAANFSRE 190
                      +  + E  +  L  +  L       L+      +               
Sbjct: 63  GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122

Query: 191 LADYIIYIIDVSGGDKIPRKGGPGITQ---------ADLLVINKTDLASAIGADLAVMER 241
               ++YI D     K                      +  +NK DL S    +      
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182

Query: 242 DALRM 246
           + +  
Sbjct: 183 EDIDY 187

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 64  YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIF 119
           +  +  P       N+    +   GP G+GK+   + +   L +KY    S+   + D F
Sbjct: 11  FLDKYIPEWFETG-NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69

Query: 120 --TKEDGEFLMRN 130
             T ED   L   
Sbjct: 70  YLTHEDQLKLNEQ 82

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
           V + GP G GKT L+    + L+     +     +   +           L   R     
Sbjct: 4   VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63

Query: 143 TGGCPHAAIREDIS----INLGPLEELSNLFKADLLLCESGG 180
            G  P    RE       ++L   E+L+     +       G
Sbjct: 64  VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPG 105

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 3/95 (3%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-- 140
             + G   +GKT LM         + + +  V +     E       +    E       
Sbjct: 4   WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLL 175
              G              L  +  L    + DL+L
Sbjct: 64  AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVL 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.94
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.93
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.93
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.93
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.93
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.89
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.87
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.86
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	99.85
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.82
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.79
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.62
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.44
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.33
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.27
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.27
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.26
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.24
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.19
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.17
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.12
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.12
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.08
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.08
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.06
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.05
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.04
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.03
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.02
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.99
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.93
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.91
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.89
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.88
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.88
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.87
d1okkd2	207	GTPase domain of the signal recognition particle r	98.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.85
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.84
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.83
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.81
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.79
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.78
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.77
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.73
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.72
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.72
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.71
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.7
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.7
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.69
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.68
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.64
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.57
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.57
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.52
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.45
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.43
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.35
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.29
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.27
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.2
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.13
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.12
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.91
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.86
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.82
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.82
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.68
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.51
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.5
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.49
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.47
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.43
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.43
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.39
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.36
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.31
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.31
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.3
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.25
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.23
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.22
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.18
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.18
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.17
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.15
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.15
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.08
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.06
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.06
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.05
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.04
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.02
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.02
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.0
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.0
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.99
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.98
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.93
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.93
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.9
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.89
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.89
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.88
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.88
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.86
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.83
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.8
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.77
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.74
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.7
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.68
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.68
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.66
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.66
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.65
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.65
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.54
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.54
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.49
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.48
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.47
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.46
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.44
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.43
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.43
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.38
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.34
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.32
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.31
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.29
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.29
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.26
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.09
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.08
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.99
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.95
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.87
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.85
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.78
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.77
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.68
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.57
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.55
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.5
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.5
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.46
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.41
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.4
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.4
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.35
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.29
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.26
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.25
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.16
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.13
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.09
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.03
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	95.02
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.65
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.44
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.35
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.31
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.3
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.83
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.77
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.77
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	93.63
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.46
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.46
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.44
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.19
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.15
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.1
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.05
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.74
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.7
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.56
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.46
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.28
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.06
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.03
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	91.81
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	91.74
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.21
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.84
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.65
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.13
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.9
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.57
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	89.5
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.94
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.9
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.57
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.52
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.46
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	88.21
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.85
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.59
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.67
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.31
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	85.07
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	85.01
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.92
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.78
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.24
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.67
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.52
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	82.32
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	82.23
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	81.77
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.62
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.11
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.06

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=1.5e-28  Score=212.34  Aligned_cols=145  Identities=11%  Similarity=-0.045  Sum_probs=113.3

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      +|++.+++.++++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+.  ++++||+||++.    
T Consensus        15 ~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~   92 (239)
T d1v43a3          15 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPH   92 (239)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------C
T ss_pred             EECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechhhccc
Confidence            344677777888888999999999999999999999999999999 9999999998765543  467999999973    


Q ss_pred             ----HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 ----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ----~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                          +++.+...... ...+....+.+.|+.+......++.+.+ |+||+||++|||+|+ +|+|+|+| ||+++|+..+
T Consensus        93 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~  172 (239)
T d1v43a3          93 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR  172 (239)
T ss_dssp             CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHH
Confidence                23333322222 2223334566788888888888888888 999999999999999 99999999 9999997543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.5e-29  Score=214.88  Aligned_cols=144  Identities=13%  Similarity=-0.001  Sum_probs=92.8

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHh
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET  143 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~  143 (275)
                      |++.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+.  ++++||+||++..+..+
T Consensus        10 yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~~   87 (232)
T d2awna2          10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL   87 (232)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEECSSCCC----
T ss_pred             ECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeeccccccccch
Confidence            44566777777778889999999999999999999999999999 9999999998765542  46799999997433322


Q ss_pred             cCCCccch---------HHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          144 GGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       144 ~~~~~~~~---------~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      +...+..+         .+....+.+.|+.+......++.+.+ |+||+||++|||+|+ +|.++|+| ||+++|+..+
T Consensus        88 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~  166 (232)
T d2awna2          88 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR  166 (232)
T ss_dssp             -----------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence            22222111         12224456678888777778888888 999999999999999 99999999 9999997643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=9.1e-28  Score=206.48  Aligned_cols=140  Identities=18%  Similarity=0.053  Sum_probs=108.3

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHH----HHhccccCchhH------
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI------  138 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~------  138 (275)
                      ++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.++    ++++||+||++.      
T Consensus        20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t   99 (230)
T d1l2ta_          20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT   99 (230)
T ss_dssp             EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred             EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCcc
Confidence            455666667889999999999999999999999999999 999999999987766553    346999999862      


Q ss_pred             --HHHHhc----CCCccchHHHHHHHHHHHHHhhccc-cccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 --RAVETG----GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 --~~~~~~----~~~~~~~~~~~~~~~~~L~~l~~~~-~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                        +++.++    ........+....+.+.|+.+.... ..+..+.+ ||||+||++|||||+ +|+|+|+| ||+++|..
T Consensus       100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~  179 (230)
T d1l2ta_         100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK  179 (230)
T ss_dssp             HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence              333322    1222233333455566777776654 35677777 999999999999999 99999999 89999875


Q ss_pred             c
Q 023913          209 R  209 (275)
Q Consensus       209 ~  209 (275)
                      .
T Consensus       180 ~  180 (230)
T d1l2ta_         180 T  180 (230)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=2.7e-28  Score=211.00  Aligned_cols=153  Identities=14%  Similarity=-0.008  Sum_probs=117.4

Q ss_pred             cccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC---hHHHHHhcc
Q 023913           56 HEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNG  131 (275)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~---~~~~~~~ig  131 (275)
                      +++..|++  ++..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+   ...+++++|
T Consensus         8 nlsk~y~~--g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig   85 (242)
T d1oxxk2           8 NVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIG   85 (242)
T ss_dssp             EEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEE
T ss_pred             eEEEEECC--CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccce
Confidence            34445543  1345666777777889999999999999999999999999999 99999998875433   123456799


Q ss_pred             ccCchhH--------HHHHhcCCCcc-chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe
Q 023913          132 ALPEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (275)
Q Consensus       132 ~v~q~~~--------~~~~~~~~~~~-~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD  200 (275)
                      |+||++.        +++.++..... ...+....+.+.++.+......++.+.+ |+||+||++|||||+ +|.|+|+|
T Consensus        86 ~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllD  165 (242)
T d1oxxk2          86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD  165 (242)
T ss_dssp             EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeec
Confidence            9999862        44444433222 2223335567788888888888888988 999999999999999 99999999


Q ss_pred             -CCCCCCcccc
Q 023913          201 -VSGGDKIPRK  210 (275)
Q Consensus       201 -~t~g~d~~~~  210 (275)
                       |++++|+...
T Consensus       166 EPt~~LD~~~~  176 (242)
T d1oxxk2         166 EPFSNLDARMR  176 (242)
T ss_dssp             STTTTSCGGGH
T ss_pred             CCccCCCHHHH
Confidence             8999998654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=3e-28  Score=209.15  Aligned_cols=138  Identities=17%  Similarity=0.053  Sum_probs=107.8

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------H
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (275)
                      .++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+  .++++||+||++.        +
T Consensus        14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~--~~r~ig~v~Q~~~l~~~~tV~e   91 (229)
T d3d31a2          14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKK   91 (229)
T ss_dssp             CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHH
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch--hHhcceeeccccccCccccHHH
Confidence            3666667777889999999999999999999999999999 999999999876554  3578999999862        2


Q ss_pred             HHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      ++.++.....  ......+.+.++.+......++.+.+ |+||+||++|||||+ +|+++|+| |++++|+..+
T Consensus        92 nl~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~  163 (229)
T d3d31a2          92 NLEFGMRMKK--IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ  163 (229)
T ss_dssp             HHHHHHHHHC--CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHH
T ss_pred             HHHHHHhhcc--ccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHH
Confidence            2222110000  00113455677788777778888888 999999999999999 99999999 9999997543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4e-28  Score=209.90  Aligned_cols=142  Identities=16%  Similarity=0.053  Sum_probs=111.4

Q ss_pred             CCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHH---HHHhccccCchhH------
Q 023913           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNGALPEERI------  138 (275)
Q Consensus        69 ~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~---~~~~ig~v~q~~~------  138 (275)
                      +++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.+   +++++|||||++.      
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~t   98 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT   98 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSB
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCcc
Confidence            4566666667889999999999999999999999999999 99999999987766543   4568999999862      


Q ss_pred             --HHHHhcCCC-ccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 --RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 --~~~~~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                        +++.++... .....+....+.+.|+.+++....++.+.+ ||||+||++|||||+ +|+|+|+| ||+++|....
T Consensus        99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~  176 (240)
T d3dhwc1          99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (240)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHh
Confidence              233222111 111122234566788888888888888888 999999999999999 99999999 8999997653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.94  E-value=1.3e-28  Score=212.87  Aligned_cols=147  Identities=12%  Similarity=-0.016  Sum_probs=112.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChH----HHHHhccccCchhH
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG----EFLMRNGALPEERI  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~----~~~~~ig~v~q~~~  138 (275)
                      +|++.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......    ..++++||+||++.
T Consensus        12 ~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~   91 (240)
T d1g2912          12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA   91 (240)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred             EECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh
Confidence            344666777777778899999999999999999999999999999 9999999887543322    23467999999862


Q ss_pred             --------HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCC
Q 023913          139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (275)
Q Consensus       139 --------~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d  206 (275)
                              +++.++.... ....+....+.+.++.+......++.+.+ ||||+||++|||||+ +|+|+|+| ||+++|
T Consensus        92 L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD  171 (240)
T d1g2912          92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD  171 (240)
T ss_dssp             CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSC
T ss_pred             hcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccC
Confidence                    2222221111 11122234466688888887778888888 999999999999999 99999999 999999


Q ss_pred             cccc
Q 023913          207 IPRK  210 (275)
Q Consensus       207 ~~~~  210 (275)
                      +..+
T Consensus       172 ~~~~  175 (240)
T d1g2912         172 AKLR  175 (240)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=6.3e-28  Score=210.96  Aligned_cols=146  Identities=21%  Similarity=0.126  Sum_probs=115.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~---  138 (275)
                      +|++.+++.++++...+||+++|+||||||||||+++|+|+++|+ |+|.+.+.++....+.++++ .++|+||++.   
T Consensus        13 ~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~   92 (254)
T d1g6ha_          13 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK   92 (254)
T ss_dssp             EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred             EECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCC
Confidence            455677888888888999999999999999999999999999999 99999999998777776655 4999999873   


Q ss_pred             -----HHHHhcCCCcc--------------chHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          139 -----RAVETGGCPHA--------------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       139 -----~~~~~~~~~~~--------------~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                           +++.++.....              ...+....+.+.++.+......+..+.+ |+||+||++|||+|+ +|+++
T Consensus        93 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~ll  172 (254)
T d1g6ha_          93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI  172 (254)
T ss_dssp             GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCch
Confidence                 34444321110              0112223455567777767777888888 999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      ||| ||+|+|+..
T Consensus       173 ilDEPt~gLD~~~  185 (254)
T d1g6ha_         173 VMDEPIAGVAPGL  185 (254)
T ss_dssp             EEESTTTTCCHHH
T ss_pred             hhcCCcccCCHHH
Confidence            999 999999754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.94  E-value=2e-27  Score=206.23  Aligned_cols=151  Identities=13%  Similarity=0.083  Sum_probs=110.7

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+++|.|++   ...++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++++||+
T Consensus         5 knvsf~Y~~---~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v   81 (242)
T d1mv5a_           5 RHVDFAYDD---SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV   81 (242)
T ss_dssp             EEEEECSSS---SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred             EEEEEECCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEE
Confidence            467888877   556666676677889999999999999999999999999999 9999999999887777788899999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          134 PEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      ||++.       +++.++........ ......+  .+..+.  .....+..+.+     |+||+||++|||||+ +|+|
T Consensus        82 ~Q~~~lf~~ti~eNi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i  160 (242)
T d1mv5a_          82 SQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI  160 (242)
T ss_dssp             CCSSCCCCEEHHHHTTSCTTSCSCHH-HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             ccccccCCcchhhheecccccccchh-hHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            99973       23223322222221 1111111  111111  12234444443     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       161 lilDEpts~LD~~~  174 (242)
T d1mv5a_         161 LMLDEATASLDSES  174 (242)
T ss_dssp             EEEECCSCSSCSSS
T ss_pred             EEecCCccccCHHH
Confidence            9999 899998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.94  E-value=2.3e-27  Score=205.67  Aligned_cols=147  Identities=18%  Similarity=0.064  Sum_probs=108.8

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHH-hccccCchhH---
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI---  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~---  138 (275)
                      +|++.+++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+.+ .++|+||++.   
T Consensus        15 ~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~   94 (240)
T d1ji0a_          15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP   94 (240)
T ss_dssp             EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred             EECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence            456677888888888999999999999999999999999999999 99999999998766544433 4789999752   


Q ss_pred             -----HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 -----RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 -----~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                           +++.+..................++.+ ......++.+.+ |+||+||++|||+|+ +|+++|+| ||+|+|+..
T Consensus        95 ~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~  174 (240)
T d1ji0a_          95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL  174 (240)
T ss_dssp             TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHH
Confidence                 333333222211111111222233333 234566777777 999999999999999 99999999 999999754


Q ss_pred             c
Q 023913          210 K  210 (275)
Q Consensus       210 ~  210 (275)
                      .
T Consensus       175 ~  175 (240)
T d1ji0a_         175 V  175 (240)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=202.61  Aligned_cols=152  Identities=15%  Similarity=0.084  Sum_probs=111.9

Q ss_pred             ccccccCCCCCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           55 SHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      .+++|.||+. .+..++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.++|+
T Consensus        15 ~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v   93 (251)
T d1jj7a_          15 QDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAV   93 (251)
T ss_dssp             EEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred             EEEEEECCCC-CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhc
Confidence            7888999871 1223556666677889999999999999999999999999999 9999999999888888899999999


Q ss_pred             CchhH-------HHHHhcCCCccchHHHHH-----HHHHHHHHhhcccccccccc----c-ChhHHHHHHHHHHhc-Cce
Q 023913          134 PEERI-------RAVETGGCPHAAIREDIS-----INLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       134 ~q~~~-------~~~~~~~~~~~~~~~~~~-----~~~~~L~~l~~~~~~d~~~~----e-S~G~~q~~~laral~-~~~  195 (275)
                      +|++.       +++.++............     ...+.++.+  ...++..+.    + |+||+||++|||||+ +|+
T Consensus        94 ~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~  171 (251)
T d1jj7a_          94 GQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGL--PQGYDTEVDEAGSQLSGGQRQAVALARALIRKPC  171 (251)
T ss_dssp             CSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTS--TTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             cccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhc--cccchhhHhccCccCChhHceEEEEeeccccCCc
Confidence            99873       344444333333222111     111222222  123333332    3 999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       172 ililDEpTs~LD~~~  186 (251)
T d1jj7a_         172 VLILDDATSALDANS  186 (251)
T ss_dssp             EEEEESTTTTCCHHH
T ss_pred             EEEecCcCcccChhh
Confidence            99999 899998643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.8e-27  Score=203.10  Aligned_cols=151  Identities=15%  Similarity=0.158  Sum_probs=109.6

Q ss_pred             ccccccCCCCCCCCCCcc-ccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPPI-LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~-~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+++|.|++   +.+.++ +.++...+|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+..++++.++|
T Consensus         5 ~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           5 RNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            467888987   565554 555556789999999999999999999999999999 999999999998888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHH--HHHHHHHHhhc-cccccccccc-----ChhHHHHHHHHHHhc-CceE
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDIS--INLGPLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~--~~~~~L~~l~~-~~~~d~~~~e-----S~G~~q~~~laral~-~~~v  196 (275)
                      +||++.       +++.+ +.+.....+...  ......+.+.. ....+..+.+     |+||+||++|||+|+ +|+|
T Consensus        82 v~Q~~~lf~~Ti~eNi~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          82 VLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             ECSSCCCTTSBHHHHHCT-TSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EecccccCCccccccccc-cCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            999873       22222 333333221111  11111111111 2233444433     999999999999999 9999


Q ss_pred             EEEe-CCCCCCccc
Q 023913          197 YIID-VSGGDKIPR  209 (275)
Q Consensus       197 lllD-~t~g~d~~~  209 (275)
                      +|+| ||+++|...
T Consensus       161 lilDEpts~LD~~~  174 (241)
T d2pmka1         161 LIFDEATSALDYES  174 (241)
T ss_dssp             EEECCCCSCCCHHH
T ss_pred             hhhhCCccccCHHH
Confidence            9999 888888643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=2.6e-26  Score=200.38  Aligned_cols=151  Identities=16%  Similarity=0.133  Sum_probs=111.2

Q ss_pred             ccccccCCCCCCCCC-CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRA-PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .+++|.|++   ... ++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.++|
T Consensus        17 ~nvsf~Y~~---~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   93 (253)
T d3b60a1          17 RNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL   93 (253)
T ss_dssp             EEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred             EEEEEEeCC---CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEE
Confidence            788899987   554 455555566779999999999999999999999999999 999999999988888889999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHH---HHHHHHhh-ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISIN---LGPLEELS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~---~~~L~~l~-~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      +||++.       .++.++.....+. +.+..+   ....+.+. ...+++..+.+     |+||+||++|||||+ +|+
T Consensus        94 v~Q~~~l~~~ti~~n~~~~~~~~~~~-~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~  172 (253)
T d3b60a1          94 VSQNVHLFNDTVANNIAYARTEEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP  172 (253)
T ss_dssp             ECSSCCCCSSBHHHHHHTTTTSCCCH-HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             EeeccccCCcchhhhhhhcCcccCCH-HHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            999873       3333433222222 222111   11112111 12234444433     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       173 ililDEpts~LD~~~  187 (253)
T d3b60a1         173 ILILDEATSALDTES  187 (253)
T ss_dssp             EEEEETTTSSCCHHH
T ss_pred             EEEeccccccCCHHH
Confidence            99999 899988643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.1e-26  Score=201.05  Aligned_cols=145  Identities=17%  Similarity=0.058  Sum_probs=111.0

Q ss_pred             CCCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH----
Q 023913           64 YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (275)
                      +|++++++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. .+..+++.+||+||++.    
T Consensus        11 ~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~~vpq~~~~~~~   89 (238)
T d1vpla_          11 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRN   89 (238)
T ss_dssp             EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTT
T ss_pred             EECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEeEeeeccccCCC
Confidence            466778888888888999999999999999999999999999999 999999998765 34567788999999852    


Q ss_pred             ----HHHHhcCCCc-cchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCccc
Q 023913          139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       139 ----~~~~~~~~~~-~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~  209 (275)
                          +++.+....+ ....+....+...++.+......+..+.+ |+||+||++|||+|+ +|+|+||| |++|+|+..
T Consensus        90 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~  168 (238)
T d1vpla_          90 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN  168 (238)
T ss_dssp             SBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence                2221111000 11111122334456666666667777777 999999999999999 99999999 999999754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=3.1e-26  Score=199.99  Aligned_cols=150  Identities=19%  Similarity=0.173  Sum_probs=112.3

Q ss_pred             ccccccCCCCCCCCCCc-cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccc
Q 023913           55 SHEPIYSPGYFSRRAPP-ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        55 ~~~~~~~~~~~~~~~~~-~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      .++.|.|++   ..+++ .+.++...+|++++|+|++|||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus        20 ~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   96 (255)
T d2hyda1          20 DHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL   96 (255)
T ss_dssp             EEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred             EEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeee
Confidence            788899987   55544 4555566789999999999999999999999999999 999999999988888899999999


Q ss_pred             cCchhH-------HHHHhcCCCccchHHHHHHHHH--HHHHhh--ccccccccccc-----ChhHHHHHHHHHHhc-Cce
Q 023913          133 LPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (275)
Q Consensus       133 v~q~~~-------~~~~~~~~~~~~~~~~~~~~~~--~L~~l~--~~~~~d~~~~e-----S~G~~q~~~laral~-~~~  195 (275)
                      ++|++.       +++.++ .+..+..+ ...+.+  .+.++.  ...+++..+.+     |+||+||++|||||+ +|+
T Consensus        97 v~Q~~~lf~~Ti~eNi~~g-~~~~~~~~-~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~  174 (255)
T d2hyda1          97 VQQDNILFSDTVKENILLG-RPTATDEE-VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP  174 (255)
T ss_dssp             ECSSCCCCSSBHHHHHGGG-CSSCCHHH-HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred             eeccccCCCCCHHHHHhcc-CcCCCHHH-HHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            999872       334343 33333222 111111  122221  12345555544     999999999999999 999


Q ss_pred             EEEEe-CCCCCCccc
Q 023913          196 IYIID-VSGGDKIPR  209 (275)
Q Consensus       196 vlllD-~t~g~d~~~  209 (275)
                      |+|+| ||+++|...
T Consensus       175 ililDEpts~LD~~t  189 (255)
T d2hyda1         175 ILILDEATSALDLES  189 (255)
T ss_dssp             EEEEESTTTTCCHHH
T ss_pred             EEEEeCccccCCHHH
Confidence            99999 888888643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=3.2e-26  Score=197.52  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=105.7

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------HHHHhcCC
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGC  146 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~~~~~~  146 (275)
                      +|...+++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+.  ++++||+||++.        +++.++..
T Consensus        19 s~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~~l~   96 (240)
T d2onka1          19 DFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLR   96 (240)
T ss_dssp             EEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred             EEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchhhHhhhhhhc
Confidence            344456899999999999999999999999999 9999999999776543  568999999862        44444432


Q ss_pred             CccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                       .....+....+.+.++.++.....++.+.+ ||||+||++|||||+ +|.++|+| |++++|+..+
T Consensus        97 -~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~  162 (240)
T d2onka1          97 -NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK  162 (240)
T ss_dssp             -TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred             -ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHH
Confidence             222222334567788888888888888888 999999999999999 99999999 9999997543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.93  E-value=1.4e-26  Score=202.51  Aligned_cols=145  Identities=12%  Similarity=0.031  Sum_probs=109.7

Q ss_pred             CCCCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCC-------------hHHHHHhc
Q 023913           65 FSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRN  130 (275)
Q Consensus        65 ~~~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~-------------~~~~~~~i  130 (275)
                      |++.+++.++++...+||+++|+||||||||||+++|+|+++|+ |+|.+.+.++....             ...+++++
T Consensus        12 yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i   91 (258)
T d1b0ua_          12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL   91 (258)
T ss_dssp             ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred             ECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence            44677777888888899999999999999999999999999999 99999998875321             13456789


Q ss_pred             cccCchhH--------HHHHhcC--CCccchHHHHHHHHHHHHHhhcccc-ccccccc-ChhHHHHHHHHHHhc-CceEE
Q 023913          131 GALPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (275)
Q Consensus       131 g~v~q~~~--------~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~~~~-~d~~~~e-S~G~~q~~~laral~-~~~vl  197 (275)
                      ||+||++.        +++..+.  .......+....+.+.++.+..... .++.+.+ ||||+||++|||+|+ +|+|+
T Consensus        92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~ll  171 (258)
T d1b0ua_          92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL  171 (258)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             EEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEE
Confidence            99999852        2222221  1111222233445667777776553 4566677 999999999999999 99999


Q ss_pred             EEe-CCCCCCccc
Q 023913          198 IID-VSGGDKIPR  209 (275)
Q Consensus       198 llD-~t~g~d~~~  209 (275)
                      |+| ||+++|...
T Consensus       172 ilDEPT~gLD~~~  184 (258)
T d1b0ua_         172 LFDEPTSALDPEL  184 (258)
T ss_dssp             EEESTTTTSCHHH
T ss_pred             EeccccccCCHHH
Confidence            999 999999754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=7.5e-25  Score=184.85  Aligned_cols=136  Identities=21%  Similarity=0.156  Sum_probs=95.9

Q ss_pred             CCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH--------
Q 023913           68 RAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (275)
Q Consensus        68 ~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (275)
                      ++++.+.++...+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..     ++.+++|+||+..        
T Consensus        14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~~~~~~~~~~t~~   88 (200)
T d1sgwa_          14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPRKISVE   88 (200)
T ss_dssp             SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEECSSCCCCTTSBHH
T ss_pred             CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEeecccCCCCcCHH
Confidence            45555666667889999999999999999999999999999 999998877642     3467899988642        


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcccc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK  210 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD-~t~g~d~~~~  210 (275)
                      +++........ .......+.+.++.+.... .+..+.+ |+||+||+.+||+|+ +|+++|+| |++++|...+
T Consensus        89 ~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~  161 (200)
T d1sgwa_          89 DYLKAVASLYG-VKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK  161 (200)
T ss_dssp             HHHHHHHHHTT-CCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred             HHHHHHHHhcC-CccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHH
Confidence            11111000000 0001122334555554322 3445666 999999999999999 99999999 8999987654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9e-23  Score=180.33  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=86.8

Q ss_pred             CCCCccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-------
Q 023913           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (275)
Q Consensus        67 ~~~~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (275)
                      +++++.+.++...+|++++|+||||||||||+++|+|+++|+ |.|.+.+             +++|+||++.       
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~  114 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIK  114 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEHH
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCceee
Confidence            455666777777889999999999999999999999999999 9988765             3788888752       


Q ss_pred             HHHHhcCCCccchHHHHHHHHHHHHHh-hccccccccccc-----ChhHHHHHHHHHHhc-CceEEEEe-CCCCCCcc
Q 023913          139 RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (275)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~~~~~d~~~~e-----S~G~~q~~~laral~-~~~vlllD-~t~g~d~~  208 (275)
                      +++.++....................+ ......+..+.+     |+||+||++|||+|+ +|+|+||| |++++|..
T Consensus       115 eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~  192 (281)
T d1r0wa_         115 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF  192 (281)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred             ccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHH
Confidence            333333211111011111101111111 111223333332     999999999999999 99999999 89999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.6e-22  Score=171.77  Aligned_cols=136  Identities=11%  Similarity=0.057  Sum_probs=100.5

Q ss_pred             CccccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCChHHHHHhccccCchhH--------HHH
Q 023913           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (275)
Q Consensus        70 ~~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~~  141 (275)
                      ++.+.++...+|++++|+||||||||||+++|+|+.+..|+|.+.+.++......++....+|++|...        .+.
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            355566666889999999999999999999999986544999999998877777777777888887641        111


Q ss_pred             HhcCCCccchHHHHHHHHHHHHHhhccccccccccc-ChhHHHHHHHHHHhc--------CceEEEEe-CCCCCCccc
Q 023913          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPR  209 (275)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~--------~~~vlllD-~t~g~d~~~  209 (275)
                      .+..... .   ......+.++.+......++.+.+ |+||+||+++||+|+        +|+|+|+| |++++|+..
T Consensus        94 ~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~  167 (231)
T d1l7vc_          94 TLHQHDK-T---RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ  167 (231)
T ss_dssp             HHHCSCT-T---CHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHH
T ss_pred             hhccchh-h---HHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHH
Confidence            1221111 1   112233455566666667777777 999999999999996        45899999 999999654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.7e-22  Score=172.85  Aligned_cols=182  Identities=18%  Similarity=0.247  Sum_probs=128.6

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCC-hHHHHHhccccCchhHHHHHhcCCCccchHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~  158 (275)
                      +-+++.|+|+.||||||||+.++.. .+..+++++.||++... ++.+....+.     ......++|.||+....+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~-~~~~riaVI~Ne~g~~~iD~~~~~~~~~-----~~~el~~gcicc~~~~~~~~~   75 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA   75 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS-CCCCCEEEECSSCCSCCEEEEEECTTSC-----EEEEETTSCEEECTTSCHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc-CCCCcEEEEEecccchhhhhhhhccccc-----ceEEecCCcceeccchhHHHH
Confidence            4689999999999999999999985 33368999999998754 3222221111     011236899999876555332


Q ss_pred             -HHHHHHhhc-ccccccccccChhHHHHHHHHHHhc-----------CceEEEEeCCCCCCcccc---ccccccccCEEE
Q 023913          159 -LGPLEELSN-LFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKIPRK---GGPGITQADLLV  222 (275)
Q Consensus       159 -~~~L~~l~~-~~~~d~~~~eS~G~~q~~~laral~-----------~~~vlllD~t~g~d~~~~---~~~~i~~adiiv  222 (275)
                       ...++.+.. ...++++++|+.|......++..+.           +..|+++|+..+.+....   +..|++.||+||
T Consensus        76 l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv  155 (222)
T d1nija1          76 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  155 (222)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCCccc
Confidence             223333322 3468999999888876666654431           456889999988765433   357899999999


Q ss_pred             EecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccce
Q 023913          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       223 lNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      +||+|+++.    .+++++.++++||.++|+.++. ....++.|++...|
T Consensus       156 lNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~~-g~v~~~~ll~~~~~  200 (222)
T d1nija1         156 LTKTDVAGE----AEKLHERLARINARAPVYTVTH-GDIDLGLLFNTNGF  200 (222)
T ss_dssp             EECTTTCSC----THHHHHHHHHHCSSSCEEECCS-SCCCGGGGSCCCTT
T ss_pred             ccccccccH----HHHHHHHHHHHhCCCeEEEeeC-CccCHHHhhCCCCC
Confidence            999999875    3578889999999999998662 44577888776544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.82  E-value=1.2e-20  Score=169.75  Aligned_cols=185  Identities=19%  Similarity=0.186  Sum_probs=125.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch------
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI------  151 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~------  151 (275)
                      .+..++||+||+|||||||+..|+..+... -+++++.+|+....      ..|.+..+..++......+++.+      
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~------~gg~llgdr~rm~~~~~~~~~~ir~~~~~  122 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR------TGGSILGDKTRMARLAIDRNAFIRPSPSS  122 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS------SCCCSSCCGGGSTTGGGCTTEEEECCCCC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH------HHhccccchhhHHHHhcccceeecccccc
Confidence            457899999999999999999999876544 68999999986531      23444455555444432222211      


Q ss_pred             --HHHH-HHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCCC
Q 023913          152 --REDI-SINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (275)
Q Consensus       152 --~~~~-~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~Dl  228 (275)
                        ...+ ....+.+. +....+++.+++|+.|..|.......+++..++++.|..|++.|..+..+++.||++|+||+|+
T Consensus       123 ~~~gg~~~~~~~~i~-~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vvNKaD~  201 (323)
T d2qm8a1         123 GTLGGVAAKTRETML-LCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADD  201 (323)
T ss_dssp             SSHHHHHHHHHHHHH-HHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCST
T ss_pred             ccccchhHHHHHHHH-hhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhhhhhhhhhHhhhhheeeEecccc
Confidence              1111 22222222 2234578999999999888777766777999999999999999999999999999999999998


Q ss_pred             CccchhhHHH---HHHHHHhcC-----CCCCEEEEEecCCcCHHHHhccc
Q 023913          229 ASAIGADLAV---MERDALRMR-----DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       229 ~~~~~~~~~~---~~~~i~~~~-----~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+......+.   +...+....     +..||+.+|+++++|+++|++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I  251 (323)
T d2qm8a1         202 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI  251 (323)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHH
Confidence            7663222222   122222222     45789999999999999999854

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.7e-20  Score=164.22  Aligned_cols=186  Identities=19%  Similarity=0.186  Sum_probs=119.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchH----
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR----  152 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~----  152 (275)
                      ..+..++||+||+|||||||++.|+..+... .+|+++..|+.....      -|.+..+..++......+++..+    
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~------ggailgdr~rm~~~~~~~~~~ir~~~~  124 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT------GGSILGDKTRMNDLARAEAAFIRPVPS  124 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------------CTTTTCTTEEEEEECC
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeee------ccccccchhHHHHhccccccccccccc
Confidence            3458899999999999999999999887766 589999999875321      22233333344333333332211    


Q ss_pred             -----HHHHHHHHHHHHhhcccccccccccChhHHHHHHHHHHhcCceEEEEeCCCCCCccccccccccccCEEEEecCC
Q 023913          153 -----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD  227 (275)
Q Consensus       153 -----~~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~laral~~~~vlllD~t~g~d~~~~~~~~i~~adiivlNK~D  227 (275)
                           .......+.+. +....++|.+++|+.|..|...-...+++..+++++|..|++.+..+...++.||++|+||+|
T Consensus       125 ~g~lgg~~~~~~~~~~-~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aDi~VvNKaD  203 (327)
T d2p67a1         125 SGHLGGASQRARELML-LCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDD  203 (327)
T ss_dssp             -----CHHHHHHHHHH-HHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCC
T ss_pred             ccccccchhhhhHHHH-HHHhcCCCeEEEeeccccccchhhhhccceEEEEecCCCchhhhhhchhhhccccEEEEEeec
Confidence                 11112222222 223457899999988888877766667799999999999999999888889999999999999


Q ss_pred             CCccch--hhHHHHHHHHHhcCC-----CCCEEEEEecCCcCHHHHhccc
Q 023913          228 LASAIG--ADLAVMERDALRMRD-----GGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       228 l~~~~~--~~~~~~~~~i~~~~~-----~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +.....  .....+...++.+.+     ..||+.+|+++|+|+++|++.+
T Consensus       204 ~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I  253 (327)
T d2p67a1         204 GDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAI  253 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHH
Confidence            876521  123344444544433     3579999999999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.62  E-value=5.3e-17  Score=137.81  Aligned_cols=184  Identities=18%  Similarity=0.120  Sum_probs=105.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCCCCCh-H----HHHHhccc--cCchhHHHHHhcCCCccc--hHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-G----EFLMRNGA--LPEERIRAVETGGCPHAA--IRE  153 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~~~~~-~----~~~~~ig~--v~q~~~~~~~~~~~~~~~--~~~  153 (275)
                      +++|+||+|||||||++.|+..+....++.++..|++.... .    +.+..+.+  ....  .....++|.+|.  +.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE--GYGPNGAIVESYDRLME   79 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT--TCCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHh--hhccCCchhhhhHhHHh
Confidence            68999999999999999999876544678888777654321 0    00000000  0000  000112222221  112


Q ss_pred             HHHHHHHHHHHhhcccccccccccChhHHHHHHH-------HHHhc-CceEEEEeCCCCCCccccc---------ccccc
Q 023913          154 DISINLGPLEELSNLFKADLLLCESGGDNLAANF-------SRELA-DYIIYIIDVSGGDKIPRKG---------GPGIT  216 (275)
Q Consensus       154 ~~~~~~~~L~~l~~~~~~d~~~~eS~G~~q~~~l-------aral~-~~~vlllD~t~g~d~~~~~---------~~~i~  216 (275)
                      ........+..  .....++++++++|+......       +..+. +..++++|+..+.+.+...         ..++.
T Consensus        80 ~~~~~~~~~~~--~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~  157 (244)
T d1yrba1          80 KFNEYLNKILR--LEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLG  157 (244)
T ss_dssp             THHHHHHHHHH--HHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHh--hccccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhC
Confidence            22221222221  122456777787776554332       11222 4577888887776654321         24567


Q ss_pred             ccCEEEEecCCCCccchhhHHHH----------------------------HHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          217 QADLLVINKTDLASAIGADLAVM----------------------------ERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~----------------------------~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      .++++|+||+|+.+.  ...+.+                            ...+.+..+..+++++|+++|+|+++|++
T Consensus       158 ~~~ivvinK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~  235 (244)
T d1yrba1         158 ATTIPALNKVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  235 (244)
T ss_dssp             SCEEEEECCGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             CCceeeeeccccccH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            899999999999976  222111                            11223445678999999999999999998


Q ss_pred             ccce
Q 023913          269 ITHY  272 (275)
Q Consensus       269 ~~~~  272 (275)
                      ++..
T Consensus       236 ~l~e  239 (244)
T d1yrba1         236 LAYE  239 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.44  E-value=1e-13  Score=113.17  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             cccChhHHHHHHH-HHHhc--CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHH----HHH
Q 023913          175 LCESGGDNLAANF-SRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVME----RDA  243 (275)
Q Consensus       175 ~~eS~G~~q~~~l-aral~--~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~----~~i  243 (275)
                      +..++|......- .+++.  +..++++|+..+...+.+.    ......+-++|+||+|+...  ...+...    +.+
T Consensus        63 ~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~--~~~~~~~~~~~~~~  140 (179)
T d1wb1a4          63 LVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMIMKSIL  140 (179)
T ss_dssp             ECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCH--HHHHHHHHHHHHHH
Confidence            3345554433322 23333  7888899998876543321    12235678899999999876  3332222    222


Q ss_pred             HhcC--CCCCEEEEEecCCcCHHHHhccc
Q 023913          244 LRMR--DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       244 ~~~~--~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ....  +..+++++||++|+|+++|++.+
T Consensus       141 ~~~~~~~~~~iv~iSA~~g~gi~eL~~~I  169 (179)
T d1wb1a4         141 QSTHNLKNSSIIPISAKTGFGVDELKNLI  169 (179)
T ss_dssp             HHSSSGGGCCEEECCTTTCTTHHHHHHHH
T ss_pred             HHhhcCCCCeEEEEEccCCcCHHHHHHHH
Confidence            2221  35789999999999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=1.5e-13  Score=111.68  Aligned_cols=74  Identities=11%  Similarity=-0.050  Sum_probs=51.2

Q ss_pred             CceEEEEeCCCCCCccccc-cccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHH
Q 023913          193 DYIIYIIDVSGGDKIPRKG-GPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l  266 (275)
                      +..|+++|+..+....... ...+     ..+-++|+||+|+....    +...+.+.+..+...++++||+++.|+++|
T Consensus        86 d~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP----EEAMKAYHELLPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH----HHHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             cceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH----HHHHHHHHhhcccCceEEEecCCCCCHHHH
Confidence            6678889987664432211 1111     23457889999997752    334456667778888999999999999999


Q ss_pred             hccc
Q 023913          267 LSIT  270 (275)
Q Consensus       267 ~~~~  270 (275)
                      ++.+
T Consensus       162 ~~~i  165 (178)
T d1wf3a1         162 KADL  165 (178)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9854

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=2e-12  Score=105.04  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             cCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcC---CCCCEEEEEecCCcCHH
Q 023913          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVGWVIGII  264 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---~~~~ii~~S~~~~~g~~  264 (275)
                      ++-.++++|+..+.......    ......+-++|+||+|+........+.+.+.+++..   +..+++++||++|.|++
T Consensus        92 ~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~  171 (186)
T d1mkya2          92 ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNID  171 (186)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHH
T ss_pred             CCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHH
Confidence            37788889987665433211    122245668889999998664444555555555432   46789999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      +|++.+.
T Consensus       172 ~L~~~i~  178 (186)
T d1mkya2         172 RMIDAMN  178 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=1.6e-12  Score=106.78  Aligned_cols=77  Identities=8%  Similarity=-0.040  Sum_probs=51.7

Q ss_pred             CceEEEEeCCCCCCcccc----ccccccccCEEEEecCCCCccchhhHHHHHHHHH---hcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~----~~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~---~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|...+......    .......+-++|+||+|+.+.  .+.+...+.++   ..++..+++++||++++|+++
T Consensus       107 ~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~e  184 (195)
T d1svia_         107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE  184 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred             hhhhhhhhccccccccccccccccccccCcceechhhccccCH--HHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHH
Confidence            567888897665432211    112234566889999999876  34444433333   345788999999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      +++.+.
T Consensus       185 l~~~i~  190 (195)
T d1svia_         185 AWGAIK  190 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=9.7e-13  Score=106.81  Aligned_cols=52  Identities=17%  Similarity=0.189  Sum_probs=41.4

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..+-++|+||+|+.+.  ...+.+.+.+.+  .+.+++++||++|+|+++|++.++
T Consensus       113 ~~p~iiv~NK~D~~~~--~~~~~~~~~~~~--~~~~~~~iSA~tg~gid~L~~~i~  164 (180)
T d1udxa2         113 RRPSLVALNKVDLLEE--EAVKALADALAR--EGLAVLPVSALTGAGLPALKEALH  164 (180)
T ss_dssp             HSCEEEEEECCTTSCH--HHHHHHHHHHHT--TTSCEEECCTTTCTTHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhH--HHHHHHHHHHHh--cCCeEEEEEcCCCCCHHHHHHHHH
Confidence            3566889999999887  556666666654  467899999999999999988653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=2.1e-12  Score=105.15  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=38.3

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+-++|+||+|+.+.    .+.++.....+..+.+++++||++|.|+++|++.+
T Consensus       117 ~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i  167 (185)
T d1lnza2         117 ERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV  167 (185)
T ss_dssp             TSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHH
T ss_pred             CCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence            3456899999999765    12333344456678899999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=4.3e-12  Score=102.00  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=45.6

Q ss_pred             CceEEEEeCCCCCCccccc-cc---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG-GP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..+++.|+..+....... ..   ....+-++|+||+|+...  .. ..+...+.+. ...+++++||++|.|+++|++
T Consensus        82 d~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~--~~-~~~~~~~~~~-~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--FE-REVKPELYSL-GFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--HH-HHTHHHHGGG-SSCSCEECBTTTTBSHHHHHH
T ss_pred             cEEEEeecccccccccccccccccccccccccccchhhhhhhh--hh-hHHHHHHHhc-CCCCeEEEecCCCCCHHHHHH
Confidence            5556666765554322111 11   123455888999999765  22 3333344444 345789999999999999987


Q ss_pred             cc
Q 023913          269 IT  270 (275)
Q Consensus       269 ~~  270 (275)
                      .+
T Consensus       158 ~i  159 (171)
T d1mkya1         158 TI  159 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=5.9e-12  Score=99.69  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             cCceEEEEeCCCCCCccccc-ccc-ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          192 ADYIIYIIDVSGGDKIPRKG-GPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~~~~~-~~~-i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      ++..++++|+..+....... ..+ ....-++++||+|+.+.  ...+.+.+   .+.+..+++++||++|.|+++|++.
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~--~~~~~~~~---~~~~~~~~~~vSA~~g~gi~~L~~~  155 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INEEEIKN---KLGTDRHMVKISALKGEGLEKLEES  155 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCHHHHHH---HHTCSTTEEEEEGGGTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccch--hhhHHHHH---HhCCCCcEEEEECCCCCCHHHHHHH
Confidence            37889999988765432211 112 23445778999999887  44444443   4456789999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.3e-12  Score=101.20  Aligned_cols=60  Identities=15%  Similarity=-0.002  Sum_probs=45.4

Q ss_pred             cccCEEEEecCCCCccc--hhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccceecC
Q 023913          216 TQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITHYIVS  275 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~--~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~~~~~  275 (275)
                      ....++++||+|++...  ....+.+++.+....+..+++++||++|.|+++|++.+.-+|+
T Consensus       127 ~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~~  188 (188)
T d1puia_         127 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  188 (188)
T ss_dssp             TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            45668889999998762  1234455566666677789999999999999999988766553

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=4.5e-11  Score=96.05  Aligned_cols=54  Identities=15%  Similarity=-0.009  Sum_probs=40.8

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..-++|+||+|..... .++....+.+.+.....+++++||++|.|+++|++.+.
T Consensus       114 ~~~i~v~~k~d~~~~~-~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~  167 (179)
T d1egaa1         114 APVILAVNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  167 (179)
T ss_dssp             SCEEEEEESTTTCCCH-HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             Cceeeeeeeeeccchh-hhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHH
Confidence            3457889999987653 34444555666666778999999999999999998653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.08  E-value=2.1e-10  Score=94.28  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=61.8

Q ss_pred             ccccccChhHHHHHHHH-HHhc--CceEEEEeCCCCCCccc-c----ccccccccC-EEEEecCCCCccch--hhHHHHH
Q 023913          172 DLLLCESGGDNLAANFS-RELA--DYIIYIIDVSGGDKIPR-K----GGPGITQAD-LLVINKTDLASAIG--ADLAVME  240 (275)
Q Consensus       172 d~~~~eS~G~~q~~~la-ral~--~~~vlllD~t~g~d~~~-~----~~~~i~~ad-iivlNK~Dl~~~~~--~~~~~~~  240 (275)
                      ...+++++|.......+ +++.  +..++++|+..|...+. +    ....+..+. ++++||+|+.+...  ...+.+.
T Consensus        79 ~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          79 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHH
Confidence            34566777866554433 3333  88899999887753221 1    111223455 55699999987621  2233444


Q ss_pred             HHHHhcCC-CCCEEEEEecCCcCHHHHhcc
Q 023913          241 RDALRMRD-GGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       241 ~~i~~~~~-~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +.+....+ ..+++++||++|+|+++|++.
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~  188 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKA  188 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHH
Confidence            55554443 578999999999999999874

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=2.4e-11  Score=98.13  Aligned_cols=55  Identities=11%  Similarity=-0.023  Sum_probs=36.5

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcC--CCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~--~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+-++|+||+|+++......+.+.+.+....  ....++++||++|.|+++|++.+
T Consensus       121 ~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i  177 (184)
T d2cxxa1         121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI  177 (184)
T ss_dssp             TCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHH
T ss_pred             CCCEEEEEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHH
Confidence            34568899999998663333333333332211  13458899999999999998754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.06  E-value=1.1e-11  Score=104.88  Aligned_cols=78  Identities=17%  Similarity=0.003  Sum_probs=49.9

Q ss_pred             CceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccchh--------------------hHHHHHHHHHhc--
Q 023913          193 DYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGA--------------------DLAVMERDALRM--  246 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~~~--------------------~~~~~~~~i~~~--  246 (275)
                      |..|+++|+..|...+...    ......+-+|++||+|+......                    ..+.+.+.+..+  
T Consensus        95 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~  174 (227)
T d1g7sa4          95 DLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHE  174 (227)
T ss_dssp             SEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998887654432    12235677899999998754200                    001111111111  


Q ss_pred             --------------CCCCCEEEEEecCCcCHHHHhccc
Q 023913          247 --------------RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       247 --------------~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                                    ....+++++|+++|.|+++|++.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l  212 (227)
T d1g7sa4         175 EGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML  212 (227)
T ss_dssp             TTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHH
T ss_pred             hhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHH
Confidence                          123579999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.5e-12  Score=99.16  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CceEEEEeCCCCCCc--ccccc---ccc--cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKI--PRKGG---PGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~--~~~~~---~~i--~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|+......  .....   ..+  ..+-++|+||+|+..... .       +.+ ....+++++||+++.|+++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~-~-------~~~-~~~~~~~~iSAk~~~gi~~  152 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-G-------MSE-VNGHALIRLSARTGEGVDV  152 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-E-------EEE-ETTEEEEECCTTTCTTHHH
T ss_pred             cccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH-H-------HHH-hCCCcEEEEECCCCCCHHH
Confidence            556677776544321  11111   111  345578999999876521 1       122 2467899999999999999


Q ss_pred             Hhcccc
Q 023913          266 TLSITH  271 (275)
Q Consensus       266 l~~~~~  271 (275)
                      |++.+.
T Consensus       153 L~~~l~  158 (161)
T d2gj8a1         153 LRNHLK  158 (161)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.04  E-value=1.4e-11  Score=98.91  Aligned_cols=164  Identities=14%  Similarity=0.033  Sum_probs=81.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhH-HHHHhcCCCccchHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGGCPHAAIREDISINLG  160 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (275)
                      .++|+||||||||||++.|++.++++ |.+.+.+.+....     .++.++...... .......+....          
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----------   66 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET-----KKRTGFRIITTEGKKKIFSSKFFTS----------   66 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEETTCCEEEEEETTCCC----------
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH-----HHhhhhhhhhhhHHHHHHhhhhhhh----------
Confidence            48999999999999999999999998 8888876554321     112222111000 000000000000          


Q ss_pred             HHHHhhccccccccccc-ChhHHHHHHHHHHhc-CceEEEEeCCCCCCccc-cc----cccccccC-EEEEecCCCCccc
Q 023913          161 PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR-KG----GPGITQAD-LLVINKTDLASAI  232 (275)
Q Consensus       161 ~L~~l~~~~~~d~~~~e-S~G~~q~~~laral~-~~~vlllD~t~g~d~~~-~~----~~~i~~ad-iivlNK~Dl~~~~  232 (275)
                       ...+ .....+....+ ++|+.++..+++++. +|.++++|......... ..    ...+.... .+++.--+..   
T Consensus        67 -~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~---  141 (178)
T d1ye8a1          67 -KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD---  141 (178)
T ss_dssp             -SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSC---
T ss_pred             -hhhh-hhhhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHH---
Confidence             0000 00011111112 788999999999888 89999999653332211 11    12223222 3333222211   


Q ss_pred             hhhHHHHHHHHHhcCCCCCEEEEEecCCcC-HHHHhccc
Q 023913          233 GADLAVMERDALRMRDGGPFIFAQVGWVIG-IIFTLSIT  270 (275)
Q Consensus       233 ~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g-~~~l~~~~  270 (275)
                         ...+.+.+..+ ++.+++.++..+... .+++++.+
T Consensus       142 ---~~~~~~~i~~~-~~~~i~~v~~~nrd~~~~~i~~~l  176 (178)
T d1ye8a1         142 ---VHPLVKEIRRL-PGAVLIELTPENRDVILEDILSLL  176 (178)
T ss_dssp             ---CSHHHHHHHTC-TTCEEEECCTTTTTTHHHHHHHHS
T ss_pred             ---HHHhhceEEEE-eCCEEEEECCccHHHHHHHHHHHH
Confidence               11233445444 567788877544333 45555443

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.4e-10  Score=93.03  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=36.5

Q ss_pred             ccCEEEEecCCCCccch-hhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 QADLLVINKTDLASAIG-ADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~-~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+-+||.||+|+.+... ...+.+++..+++ ...+++++||++|.|+++++..+
T Consensus       113 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~-~~~~~~e~SA~~g~gv~e~f~~l  166 (175)
T d1ky3a_         113 FPFVILGNKIDAEESKKIVSEKSAQELAKSL-GDIPLFLTSAKNAINVDTAFEEI  166 (175)
T ss_dssp             CCEEEEEECTTSCGGGCCSCHHHHHHHHHHT-TSCCEEEEBTTTTBSHHHHHHHH
T ss_pred             CcEEEEecccchhhhhcchhHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHH
Confidence            35578899999975421 1223444444443 46789999999999999987643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.02  E-value=1.3e-10  Score=92.41  Aligned_cols=76  Identities=12%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             CceEEEEeCCCCCCccc---cc---c--ccc-cccCEEEEecCCCCccchhhHHHHHHHHH--hc-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KG---G--PGI-TQADLLVINKTDLASAIGADLAVMERDAL--RM-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~---~--~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|.+.-.....   ..   .  ... ..+-+||.||+|+...  ...+...+.+.  .+ ....+++++||++|
T Consensus        71 ~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  148 (165)
T d1ksha_          71 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTG  148 (165)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             hcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc--cCHHHHHHHHHhhhhhcCCCEEEEEECCCC
Confidence            56788888664322111   00   0  011 2345788999999765  23333433332  22 22457899999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++++
T Consensus       149 ~gv~e~~~~l  158 (165)
T d1ksha_         149 EDLLPGIDWL  158 (165)
T ss_dssp             TTHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999998853

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.99  E-value=2.9e-10  Score=91.09  Aligned_cols=76  Identities=17%  Similarity=0.094  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCCCccc---c---cccc---ccccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---K---GGPG---ITQADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~---~~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~  260 (275)
                      +..++++|.+.......   .   ....   -..+-+||.||+|+.+.  ...+.+.+.+..  . ....+++++||++|
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            67888889764321110   0   0011   12345777999999876  344445444432  1 12457899999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++++
T Consensus       163 ~gv~e~~~~l  172 (176)
T d1fzqa_         163 EGVQDGMNWV  172 (176)
T ss_dssp             TTHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999999864

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.1e-10  Score=89.84  Aligned_cols=95  Identities=12%  Similarity=0.106  Sum_probs=56.5

Q ss_pred             ccccChhHHHHHHHHHHhc---CceEEEEeCCCCCCc---cc---ccccc--c-cccCEEEEecCCCCccchhhHHHHHH
Q 023913          174 LLCESGGDNLAANFSRELA---DYIIYIIDVSGGDKI---PR---KGGPG--I-TQADLLVINKTDLASAIGADLAVMER  241 (275)
Q Consensus       174 ~~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~---~~---~~~~~--i-~~adiivlNK~Dl~~~~~~~~~~~~~  241 (275)
                      .+.+++|+..--.+.+...   +..|+++|.+.....   ..   .....  . ..+-+||.||+|+........+++.+
T Consensus        67 ~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~  146 (186)
T d2f7sa1          67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  146 (186)
T ss_dssp             EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH
Confidence            3444666544333333332   678889997653211   10   01111  1 12346789999997653233445555


Q ss_pred             HHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          242 DALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       242 ~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..++.  +.+++++||++|+|+++++..+
T Consensus       147 ~~~~~--~~~~~e~Sak~~~~i~e~f~~l  173 (186)
T d2f7sa1         147 LADKY--GIPYFETSAATGQNVEKAVETL  173 (186)
T ss_dssp             HHHHT--TCCEEEEBTTTTBTHHHHHHHH
T ss_pred             HHHHc--CCEEEEEeCCCCCCHHHHHHHH
Confidence            55554  4789999999999999998754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.95  E-value=4e-10  Score=93.39  Aligned_cols=97  Identities=14%  Similarity=0.075  Sum_probs=60.0

Q ss_pred             cccccChhHHHHHH-HHHHhc--CceEEEEeCCCCC-Cccccc----cccccccC-EEEEecCCCCccch--hhHHHHHH
Q 023913          173 LLLCESGGDNLAAN-FSRELA--DYIIYIIDVSGGD-KIPRKG----GPGITQAD-LLVINKTDLASAIG--ADLAVMER  241 (275)
Q Consensus       173 ~~~~eS~G~~q~~~-laral~--~~~vlllD~t~g~-d~~~~~----~~~i~~ad-iivlNK~Dl~~~~~--~~~~~~~~  241 (275)
                      ..++++.|...-+. ..+++.  +..|+++|+..|. ..+.+.    ...+.... +|++||+|+.+...  ...+.+.+
T Consensus        88 ~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~  167 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQ  167 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHH
Confidence            45677888765432 233443  8899999988875 323221    11123334 45699999987621  11223334


Q ss_pred             HHHhcCC-CCCEEEEEecCCcCHHHHhcc
Q 023913          242 DALRMRD-GGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       242 ~i~~~~~-~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+...++ ..+++++||++|.|+++|++.
T Consensus       168 ~l~~~~~~~~p~ipiSA~~g~nI~~L~e~  196 (205)
T d2qn6a3         168 FTKGTWAENVPIIPVSALHKINIDSLIEG  196 (205)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred             HhccccCCCCeEEEEeCCCCCChHHHHHH
Confidence            4444433 578999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.3e-10  Score=89.84  Aligned_cols=75  Identities=12%  Similarity=-0.011  Sum_probs=46.4

Q ss_pred             CceEEEEeCCCCCCc---ccccc-------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC
Q 023913          193 DYIIYIIDVSGGDKI---PRKGG-------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~-------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g  262 (275)
                      +..++++|.+.....   .....       ..-..+-++|.||+|+........+++++..++.  +.+++++||++|+|
T Consensus        75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~--~~~~~e~Sak~~~~  152 (171)
T d2erxa1          75 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--KCAFMETSAKLNHN  152 (171)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBS
T ss_pred             eEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHc--CCeEEEEcCCCCcC
Confidence            678889997753211   11100       0112344777899998654323334455555554  36899999999999


Q ss_pred             HHHHhcc
Q 023913          263 IIFTLSI  269 (275)
Q Consensus       263 ~~~l~~~  269 (275)
                      +++++..
T Consensus       153 v~e~f~~  159 (171)
T d2erxa1         153 VKELFQE  159 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.93  E-value=1.2e-09  Score=87.06  Aligned_cols=53  Identities=13%  Similarity=-0.046  Sum_probs=36.8

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHh---cCCCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~---~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ..+-+||.||+|+...  ...+.+.+.+..   .....+++++||++|+|++++++++
T Consensus       116 ~~p~iiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L  171 (177)
T d1zj6a1         116 KAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  171 (177)
T ss_dssp             TCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ceEEEEEEEccccccc--CcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            3456788999998765  333444443332   2234679999999999999998854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.91  E-value=3.7e-10  Score=90.60  Aligned_cols=76  Identities=20%  Similarity=0.159  Sum_probs=46.9

Q ss_pred             CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHH--HhcCC-CCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDA--LRMRD-GGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i--~~~~~-~~~ii~~S~~~~  260 (275)
                      +..|+++|.+.......   ..      ...-..+-+||.||+|+...  .....+...+  ..+.. ...++++||++|
T Consensus        81 ~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg  158 (173)
T d1e0sa_          81 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSG  158 (173)
T ss_dssp             CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             ceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCC
Confidence            67788889765322111   00      01123455789999999765  2333344332  23322 456889999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++++
T Consensus       159 ~gv~e~~~~l  168 (173)
T d1e0sa_         159 DGLYEGLTWL  168 (173)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHHH
Confidence            9999999865

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2e-10  Score=91.39  Aligned_cols=76  Identities=14%  Similarity=0.055  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCccc--cccccc-----cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPGI-----TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~i-----~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~  265 (275)
                      +..++++|.+.......  ....++     ..+-++|.||+|+.+......+++++..++.  +.+++++||++|.|+++
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          76 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRL--KLRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECBTTTTBSSHH
T ss_pred             ceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHc--CCEEEEeccCCCcCHHH
Confidence            56778888765422111  110111     2344677899999765323344555555554  36899999999999999


Q ss_pred             Hhccc
Q 023913          266 TLSIT  270 (275)
Q Consensus       266 l~~~~  270 (275)
                      ++..+
T Consensus       154 ~f~~l  158 (164)
T d1z2aa1         154 VFKYL  158 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=2.6e-09  Score=83.11  Aligned_cols=55  Identities=13%  Similarity=0.013  Sum_probs=37.5

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhc----------CCCCCEEEEEecCCcCHHHHhcccce
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRM----------RDGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~----------~~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      ..+-+++.||.|+...  ....++.+.+...          ....+++++||++|+|++++++++..
T Consensus       101 ~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         101 DVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            3455788999998765  2334444443221          12346899999999999999997754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.88  E-value=1.4e-09  Score=90.93  Aligned_cols=168  Identities=20%  Similarity=0.227  Sum_probs=92.3

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHHH-H
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDI-S  156 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~~-~  156 (275)
                      -.+++++||+|+||||.+--|+..+... .+|.++..|.......+.++.          +-...+++...  ...++ .
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~----------~a~~l~v~~~~~~~~~~~~~   81 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ----------LGQQIGVPVYGEPGEKDVVG   81 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHH----------HHHHHTCCEECCTTCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHH----------hccccCcceeecccchhhhH
Confidence            5688999999999999998888877655 689999988654221111111          11112222211  11111 1


Q ss_pred             HHHHHHHHhhcccccccccccChhHH------H-HHHH---HHHhc-CceEEEEeCCCCCCccccccccccc--cCEEEE
Q 023913          157 INLGPLEELSNLFKADLLLCESGGDN------L-AANF---SRELA-DYIIYIIDVSGGDKIPRKGGPGITQ--ADLLVI  223 (275)
Q Consensus       157 ~~~~~L~~l~~~~~~d~~~~eS~G~~------q-~~~l---aral~-~~~vlllD~t~g~d~~~~~~~~i~~--adiivl  223 (275)
                      ...+++... .....+.+++++.|..      . ...+   ..++. +..++++|++.+.+........++.  .+-+|+
T Consensus        82 ~~~~a~~~~-~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~  160 (211)
T d1j8yf2          82 IAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIII  160 (211)
T ss_dssp             HHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEE
T ss_pred             HHHHHHHHh-hccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEE
Confidence            122233332 2345788999877631      1 1122   22222 4578899988886654332222333  355899


Q ss_pred             ecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       224 NK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      +|.|-....+..+.    .+.+  -+.||.+++  .|+++++|.
T Consensus       161 TKlDet~~~G~~l~----~~~~--~~lPi~~it--~Gq~v~DL~  196 (211)
T d1j8yf2         161 TKMDGTAKGGGALS----AVAA--TGATIKFIG--TGEKIDELE  196 (211)
T ss_dssp             ECTTSCSCHHHHHH----HHHT--TTCCEEEEE--CSSSTTCEE
T ss_pred             ecccCCCcccHHHH----HHHH--HCcCEEEEe--CCCCcccCc
Confidence            99998776444433    3333  468898888  588886643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=9.1e-10  Score=87.66  Aligned_cols=75  Identities=16%  Similarity=0.017  Sum_probs=46.5

Q ss_pred             CceEEEEeCCCCCCcc---ccc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP---RKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.-....   ...      ...-..+-++|.||+|+........++.....++.  +.+++++||++|.|+
T Consensus        76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sak~g~~i  153 (167)
T d1kaoa_          76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEW--GCPFMETSAKSKTMV  153 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSCEEEECTTCHHHH
T ss_pred             cceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHc--CCeEEEECCCCCcCH
Confidence            6778888876432111   000      00012345778999998765333344444444554  368999999999999


Q ss_pred             HHHhcc
Q 023913          264 IFTLSI  269 (275)
Q Consensus       264 ~~l~~~  269 (275)
                      ++++..
T Consensus       154 ~e~f~~  159 (167)
T d1kaoa_         154 DELFAE  159 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1e-09  Score=87.75  Aligned_cols=76  Identities=18%  Similarity=0.042  Sum_probs=46.6

Q ss_pred             CceEEEEeCCCCCCccc--ccc------ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~------~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.......  ...      ..-..+-++|.||+|+........+++++..++.  +.+++++||++|.|++
T Consensus        79 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~gv~  156 (169)
T d3raba_          79 MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEASAKDNINVK  156 (169)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHc--CCEEEEecCCCCcCHH
Confidence            66788888765422111  000      0012333566799998765323334454455554  4689999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       157 e~f~~l  162 (169)
T d3raba_         157 QTFERL  162 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998744

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.86  E-value=1.3e-08  Score=84.53  Aligned_cols=170  Identities=16%  Similarity=0.134  Sum_probs=98.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDI  155 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~~  155 (275)
                      .++.+++++||+|+||||.+--|+..+... .+|.++..|.......+.++.          +-...+++...  ...+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~----------~a~~l~i~~~~~~~~~d~   73 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE----------WGKRLSIPVIQGPEGTDP   73 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHH----------HHHHHTCCEECCCTTCCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhh----------cccccCceEEeccCCccH
Confidence            357899999999999999999898877755 689998888654332221111          11122222211  11122


Q ss_pred             HH-HHHHHHHhhcccccccccccChhH--------HHHHHHHHHh--c-----CceEEEEeCCCCCCccccccccc--cc
Q 023913          156 SI-NLGPLEELSNLFKADLLLCESGGD--------NLAANFSREL--A-----DYIIYIIDVSGGDKIPRKGGPGI--TQ  217 (275)
Q Consensus       156 ~~-~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral--~-----~~~vlllD~t~g~d~~~~~~~~i--~~  217 (275)
                      .. ..+.+.. ......+.+++++.|.        .+...+.+..  .     ...++++|++.+.+........+  -.
T Consensus        74 ~~~~~~~~~~-~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~  152 (207)
T d1okkd2          74 AALAYDAVQA-MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG  152 (207)
T ss_dssp             HHHHHHHHHH-HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHH-HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC
Confidence            11 1112221 1233578999997773        2222233322  1     24689999988865433222222  23


Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      .+-+|++|.|-....+..+..+    ..  -+.||.+++  +|+..++|.
T Consensus       153 ~~~lI~TKlDet~~~G~~l~~~----~~--~~~Pi~~i~--~Gq~p~Dl~  194 (207)
T d1okkd2         153 LTGVIVTKLDGTAKGGVLIPIV----RT--LKVPIKFVG--VGEGPDDLQ  194 (207)
T ss_dssp             CSEEEEECTTSSCCCTTHHHHH----HH--HCCCEEEEE--CSSSTTCEE
T ss_pred             CceEEEeccCCCCCccHHHHHH----HH--HCCCEEEEe--CCCChHhCc
Confidence            5789999999877655554433    22  267888887  477766554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.86  E-value=7.2e-10  Score=88.08  Aligned_cols=52  Identities=19%  Similarity=-0.038  Sum_probs=35.7

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHh--c-CCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALR--M-RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~--~-~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+-+||.||.|+...  ...+++.+.+..  + ....+++++|+++|+|++++++++
T Consensus       105 ~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l  159 (164)
T d1zd9a1         105 IPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL  159 (164)
T ss_dssp             CCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHH
Confidence            345688999998765  233444444321  1 235678999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.85  E-value=7.1e-10  Score=89.56  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             CceEEEEeCCCCCCccc---cc------cccccccCEEEEecCCCCccchhhHHHHHHHHH--hcCC-CCCEEEEEecCC
Q 023913          193 DYIIYIIDVSGGDKIPR---KG------GPGITQADLLVINKTDLASAIGADLAVMERDAL--RMRD-GGPFIFAQVGWV  260 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~--~~~~-~~~ii~~S~~~~  260 (275)
                      +..++++|.+.......   ..      ...-..+-+||.||+|+...  ...+++.+.+.  .+.. ..+++++||++|
T Consensus        86 ~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g  163 (182)
T d1moza_          86 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG  163 (182)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             eeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCC
Confidence            56778888654432111   00      01112345777899999765  23344444332  2222 357899999999


Q ss_pred             cCHHHHhccc
Q 023913          261 IGIIFTLSIT  270 (275)
Q Consensus       261 ~g~~~l~~~~  270 (275)
                      +|++++++++
T Consensus       164 ~gv~e~~~~l  173 (182)
T d1moza_         164 EGITEGLDWL  173 (182)
T ss_dssp             BTHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            9999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.2e-09  Score=85.68  Aligned_cols=76  Identities=14%  Similarity=0.060  Sum_probs=46.3

Q ss_pred             CceEEEEeCCCCCCccc--cccc-------cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGP-------GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~-------~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|.+.......  ....       .-..+-++|.||+|+........++.++..+..  +.+++++||++|.|+
T Consensus        73 d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~~~~v  150 (168)
T d2gjsa1          73 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF--DCKFIETSAALHHNV  150 (168)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TSEEEECBTTTTBSH
T ss_pred             hhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhc--CCEEEEEeCCCCcCH
Confidence            67788889765321110  1101       112345778899999765322334444444444  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       151 ~~~f~~l  157 (168)
T d2gjsa1         151 QALFEGV  157 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.3e-10  Score=87.55  Aligned_cols=77  Identities=18%  Similarity=0.070  Sum_probs=48.9

Q ss_pred             CceEEEEeCCCCCCccc---ccccc-----ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~---~~~~~-----i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......   .....     -..+-++|.||+|+.+......+...+..++.  +.+++++||++|+|++
T Consensus        74 ~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~SAk~g~~v~  151 (164)
T d1yzqa1          74 AAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKEL--NVMFIETSAKAGYNVK  151 (164)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHH
T ss_pred             ceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHc--CCEEEEecCCCCcCHH
Confidence            56677778665432111   11000     12345677899999765434455565555554  4689999999999999


Q ss_pred             HHhcccc
Q 023913          265 FTLSITH  271 (275)
Q Consensus       265 ~l~~~~~  271 (275)
                      +++..++
T Consensus       152 e~f~~i~  158 (164)
T d1yzqa1         152 QLFRRVA  158 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.2e-09  Score=87.01  Aligned_cols=76  Identities=18%  Similarity=0.073  Sum_probs=48.1

Q ss_pred             CceEEEEeCCCCCCcc---ccc---c--ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIP---RKG---G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~---~~~---~--~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|++.|.+......   ...   .  ..-..+-++|.||+|+........+++++..++.  +.+.+++||++|.|++
T Consensus        77 ~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~--~~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          77 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV--GAKHYHTSAKQNKGIE  154 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEEBTTTTBSHH
T ss_pred             ceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHc--CCeEEEEecCCCcCHH
Confidence            5678888876542111   100   0  0112344667899999765333445555555554  4789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       155 e~F~~l  160 (167)
T d1z08a1         155 ELFLDL  160 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.1e-09  Score=87.67  Aligned_cols=50  Identities=16%  Similarity=-0.060  Sum_probs=35.3

Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      +-++|.||+|+........+.+++..+..  +.+++++||++|+|+++++..
T Consensus       112 ~~ilvgnK~D~~~~~~v~~~~~~~~~~~~--~~~~~~~SAktg~gV~e~f~~  161 (171)
T d2ew1a1         112 ITVLVGNKIDLAERREVSQQRAEEFSEAQ--DMYYLETSAKESDNVEKLFLD  161 (171)
T ss_dssp             EEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCCEEECCTTTCTTHHHHHHH
T ss_pred             cEEEEEeecccccccchhhhHHHHHHHhC--CCEEEEEccCCCCCHHHHHHH
Confidence            44677899998765333344454444443  468999999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.84  E-value=1.8e-09  Score=86.25  Aligned_cols=75  Identities=11%  Similarity=0.011  Sum_probs=47.1

Q ss_pred             CceEEEEeCCCCCCccc--ccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIPR--KGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.......  ....+       -..+-+||.||+|+.....-..+++++..++.  +.+++++||++|.|+
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~gv  154 (168)
T d1u8za_          77 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQW--NVNYVETSAKTRANV  154 (168)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TCEEEECCTTTCTTH
T ss_pred             ceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHc--CCeEEEEcCCCCcCH
Confidence            67788888665321110  01011       12345678999998654223345555666665  478999999999999


Q ss_pred             HHHhcc
Q 023913          264 IFTLSI  269 (275)
Q Consensus       264 ~~l~~~  269 (275)
                      ++++..
T Consensus       155 ~e~f~~  160 (168)
T d1u8za_         155 DKVFFD  160 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.1e-09  Score=86.20  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCCCcc--ccc-------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP--RKG-------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~~-------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|++.|.+......  ...       ...-..+-+||.||+|+........+..++..+..  +.+.+++||++|.|+
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF--DCKFIETSAAVQHNV  156 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECBTTTTBSH
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHc--CCeEEEEeCCCCcCH
Confidence            5777888976542211  000       00113455788999998765323344444444444  478999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       157 ~~~f~~l  163 (172)
T d2g3ya1         157 KELFEGI  163 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.1e-09  Score=84.83  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCCC---cccccc---c---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDK---IPRKGG---P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..+++.|.+....   ......   .   .-..+-++|.||+|+........+++.+..++.  +.+.+++||++|.|+
T Consensus        78 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~~~~i  155 (171)
T d2erya1          78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQL--KVTYMEASAKIRMNV  155 (171)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred             ceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHc--CCEEEEEcCCCCcCH
Confidence            67788888654321   111110   0   112345788999998755333445555566555  368999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       156 ~e~f~~l  162 (171)
T d2erya1         156 DQAFHEL  162 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.4e-08  Score=84.65  Aligned_cols=169  Identities=17%  Similarity=0.145  Sum_probs=96.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDISI  157 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~~~~  157 (275)
                      -.+++++||+|+||||.+--|+..+... .+|.++..|...  .+..-       |-. .+-...+.+...  ...++..
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R--~gA~e-------QL~-~~a~~l~v~~~~~~~~~d~~~   78 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR--AAAVE-------QLQ-VWGQRNNIPVIAQHTGADSAS   78 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC--HHHHH-------HHH-HHHHHTTCCEECCSTTCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc--ccchh-------hhh-hhhhhcCCcccccccCCCHHH
Confidence            3578999999999999999998877655 689998877543  22111       100 111122222211  1112222


Q ss_pred             HH-HHHHHhhcccccccccccChhHH--------HHHHHHHHhc-------CceEEEEeCCCCCCcccccccccc--ccC
Q 023913          158 NL-GPLEELSNLFKADLLLCESGGDN--------LAANFSRELA-------DYIIYIIDVSGGDKIPRKGGPGIT--QAD  219 (275)
Q Consensus       158 ~~-~~L~~l~~~~~~d~~~~eS~G~~--------q~~~laral~-------~~~vlllD~t~g~d~~~~~~~~i~--~ad  219 (275)
                      +. +.++.. .....|.+++++.|..        +...+.+.+-       .-.++++|++.+.+........++  -.+
T Consensus        79 ~l~~~~~~a-~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~  157 (211)
T d2qy9a2          79 VIFDAIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT  157 (211)
T ss_dssp             HHHHHHHHH-HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHH-HHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCc
Confidence            11 222222 2346789999977731        2222222221       247889999887654332222222  357


Q ss_pred             EEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          220 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       220 iivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      -+|++|.|-....+..+...    .+  -+.||.+++  .|+.+++|..
T Consensus       158 ~lIlTKlDe~~~~G~~l~~~----~~--~~~Pi~~i~--~Gq~v~Dl~~  198 (211)
T d2qy9a2         158 GITLTKLDGTAKGGVIFSVA----DQ--FGIPIRYIG--VGERIEDLRP  198 (211)
T ss_dssp             EEEEECCTTCTTTTHHHHHH----HH--HCCCEEEEE--CSSSGGGEEE
T ss_pred             eEEEeecCCCCCccHHHHHH----HH--HCCCEEEEe--CCCCcccCcc
Confidence            89999999876654444332    22  267899988  5888876543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.81  E-value=1.8e-09  Score=84.14  Aligned_cols=52  Identities=17%  Similarity=-0.000  Sum_probs=35.0

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHH-hc--CCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~-~~--~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+-+++.||.|+.+.  ....++..... ..  ....+++++||++|+|++++++++
T Consensus       102 ~~i~~v~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l  156 (160)
T d1r8sa_         102 AVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  156 (160)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHH
T ss_pred             ceEEEEeeccccccc--ccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHH
Confidence            345688999998765  22333332221 11  235679999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.9e-09  Score=83.26  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=47.0

Q ss_pred             CceEEEEeCCCCCCccc--cc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......  ..      ...-..+-+++.||+|+........+++++..++.  +.+++++||++|+|++
T Consensus        78 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Saktg~~v~  155 (166)
T d1z0fa1          78 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN--GLLFLEASAKTGENVE  155 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHH
T ss_pred             cEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHc--CCEEEEEeCCCCCCHH
Confidence            67788888765421111  00      01112344667899998655333445555555554  4689999999999999


Q ss_pred             HHhcc
Q 023913          265 FTLSI  269 (275)
Q Consensus       265 ~l~~~  269 (275)
                      +++..
T Consensus       156 e~f~~  160 (166)
T d1z0fa1         156 DAFLE  160 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.79  E-value=3.6e-10  Score=93.47  Aligned_cols=97  Identities=12%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             cccccccChhHHHHHH-HHHHhc--CceEEEEeCCCCCCcccccc----ccccccCEE-EEecCCCCccchhhHH----H
Q 023913          171 ADLLLCESGGDNLAAN-FSRELA--DYIIYIIDVSGGDKIPRKGG----PGITQADLL-VINKTDLASAIGADLA----V  238 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~~-laral~--~~~vlllD~t~g~d~~~~~~----~~i~~adii-vlNK~Dl~~~~~~~~~----~  238 (275)
                      ....+++++|-..-.. ..+++.  |..|+|+|+..|...|.+..    ..+....+| ++||+|+.... ...+    +
T Consensus        66 ~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~-~~~~~i~~~  144 (196)
T d1d2ea3          66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELE  144 (196)
T ss_dssp             CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred             eeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccH-HHHHHHHHH
Confidence            4455667778654322 234443  89999999999877654321    223444554 58999998641 2223    3


Q ss_pred             HHHHHHhcCC---CCCEEEEEecCC----------cCHHHHhc
Q 023913          239 MERDALRMRD---GGPFIFAQVGWV----------IGIIFTLS  268 (275)
Q Consensus       239 ~~~~i~~~~~---~~~ii~~S~~~~----------~g~~~l~~  268 (275)
                      +.+.+..+..   .+||+++|+++|          .++++|++
T Consensus       145 i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lld  187 (196)
T d1d2ea3         145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLD  187 (196)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHH
Confidence            4444444432   478999999987          47777766

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.9e-09  Score=85.79  Aligned_cols=51  Identities=16%  Similarity=-0.053  Sum_probs=36.8

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+-++|.||+|+........+++++..++.  +.+++++||++|.|+++++..
T Consensus       110 ~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1         110 IVVAIAGNKCDLTDVREVMERDAKDYADSI--HAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHHHH
T ss_pred             ceEEEecccchhccccchhHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHH
Confidence            345688999999754333344555555554  478999999999999998763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=3.9e-09  Score=84.34  Aligned_cols=75  Identities=17%  Similarity=0.054  Sum_probs=48.2

Q ss_pred             CceEEEEeCCCCC---Ccccccc---cc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCc-C
Q 023913          193 DYIIYIIDVSGGD---KIPRKGG---PG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVI-G  262 (275)
Q Consensus       193 ~~~vlllD~t~g~---d~~~~~~---~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~-g  262 (275)
                      +..++++|.+...   .......   ..   ...+-+++.||+|+........+++.+..++.+  .+.+++||+++. |
T Consensus        77 ~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~--~~~~e~Sak~~~~n  154 (169)
T d1x1ra1          77 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIETSAKDPPLN  154 (169)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEEEBCSSSCBS
T ss_pred             cEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcC--CEEEEEcCCCCCcC
Confidence            6778888876532   1111111   11   123447789999997653334456666666664  689999999886 9


Q ss_pred             HHHHhcc
Q 023913          263 IIFTLSI  269 (275)
Q Consensus       263 ~~~l~~~  269 (275)
                      +++++..
T Consensus       155 V~~~F~~  161 (169)
T d1x1ra1         155 VDKTFHD  161 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.1e-09  Score=83.15  Aligned_cols=75  Identities=16%  Similarity=0.098  Sum_probs=47.0

Q ss_pred             CceEEEEeCCCCCCc--ccccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKI--PRKGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~--~~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+.....  .......       -..+-++|.||+|+.... ...+.+++..+..  +.+++++||++|+|+
T Consensus        76 ~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~--~~~~~e~Sak~g~gi  152 (166)
T d1ctqa_          76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART-VESRQAQDLARSY--GIPYIETSAKTRQGV  152 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-SCHHHHHHHHHHH--TCCEEECCTTTCTTH
T ss_pred             cccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccc-ccHHHHHHHHHHh--CCeEEEEcCCCCcCH
Confidence            677888887643211  1111011       123567889999987542 2334455555554  468999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       153 ~e~f~~i  159 (166)
T d1ctqa_         153 EDAFYTL  159 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.5e-09  Score=85.61  Aligned_cols=75  Identities=12%  Similarity=-0.025  Sum_probs=46.7

Q ss_pred             CceEEEEeCCCCCCccc--cc-c-----ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KG-G-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~-~-----~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+.......  .. .     ..-..+-++|.||+|+........+...+..+..  +.+++++||++|+|++
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~e~Sak~~~gi~  156 (174)
T d2bmea1          79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQEN--ELMFLETSALTGENVE  156 (174)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHH
T ss_pred             CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhC--CCEEEEeeCCCCcCHH
Confidence            67788888765432111  00 0     0113456788999998665333334444444443  5789999999999999


Q ss_pred             HHhcc
Q 023913          265 FTLSI  269 (275)
Q Consensus       265 ~l~~~  269 (275)
                      +++..
T Consensus       157 e~f~~  161 (174)
T d2bmea1         157 EAFVQ  161 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.73  E-value=9.4e-09  Score=80.47  Aligned_cols=51  Identities=12%  Similarity=-0.031  Sum_probs=36.2

Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHH---hcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~---~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +-+++.||+|+...  .....+...+.   ......+++++||++|+|++++++.+
T Consensus       108 ~i~iv~nk~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l  161 (169)
T d1upta_         108 ILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL  161 (169)
T ss_dssp             EEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             eEEEEEeecccccc--ccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence            34678999999876  33334443332   22345789999999999999999765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=1.5e-08  Score=84.64  Aligned_cols=170  Identities=19%  Similarity=0.124  Sum_probs=95.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccc--hHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDISI  157 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~--~~~~~~~  157 (275)
                      -.+++++||+|+||||.+--|+..+... .+|.++..|.....-.+.++.          +-...+.+...  ...+...
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~----------~a~~l~i~~~~~~~~~d~~~   80 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI----------WGERVGATVISHSEGADPAA   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH----------HHHHHTCEEECCSTTCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHH----------HhhhcCccccccCCCCcHHH
Confidence            4588999999999999998888776645 789999988643211111110          11111222211  1112222


Q ss_pred             HHHHHHHhhcccccccccccChhH--------HHHHHHHHHhc-------CceEEEEeCCCCCCccccccccc--cccCE
Q 023913          158 NLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-------DYIIYIIDVSGGDKIPRKGGPGI--TQADL  220 (275)
Q Consensus       158 ~~~~L~~l~~~~~~d~~~~eS~G~--------~q~~~laral~-------~~~vlllD~t~g~d~~~~~~~~i--~~adi  220 (275)
                      ..............|.+++++.|.        .+...+.....       .-.++++|++.+.+........+  --.+-
T Consensus        81 ~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~  160 (213)
T d1vmaa2          81 VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTG  160 (213)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCE
T ss_pred             HHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCce
Confidence            222222222344678999997773        12223333321       23688999887754322211111  23578


Q ss_pred             EEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       221 ivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +|++|.|-....+..+..+    ...  +.||.+++  +|+.+++|..
T Consensus       161 lI~TKlDe~~~~G~~l~~~----~~~--~~Pi~~i~--~Gq~v~Dl~~  200 (213)
T d1vmaa2         161 IILTKLDGTAKGGITLAIA----REL--GIPIKFIG--VGEKAEDLRP  200 (213)
T ss_dssp             EEEECGGGCSCTTHHHHHH----HHH--CCCEEEEE--CSSSGGGEEE
T ss_pred             EEEecccCCCcccHHHHHH----HHH--CCCEEEEe--CCCCcccCcc
Confidence            9999999876654444332    222  57899888  5888876543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=1.2e-09  Score=90.78  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=53.0

Q ss_pred             ccccccccChhHHHHHH-HHHHhc--CceEEEEeCCCCCCccccc----cccccccCEE-EEecCCCCccchhhHHHH--
Q 023913          170 KADLLLCESGGDNLAAN-FSRELA--DYIIYIIDVSGGDKIPRKG----GPGITQADLL-VINKTDLASAIGADLAVM--  239 (275)
Q Consensus       170 ~~d~~~~eS~G~~q~~~-laral~--~~~vlllD~t~g~d~~~~~----~~~i~~adii-vlNK~Dl~~~~~~~~~~~--  239 (275)
                      .....+++++|-..-+. ..+++.  |..|+++|+..|...+...    ......+.+| ++||+|+++.. +..+.+  
T Consensus        66 ~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~-~~~~~~~~  144 (204)
T d2c78a3          66 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP-ELLDLVEM  144 (204)
T ss_dssp             SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH-HHHHHHHH
T ss_pred             CeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCH-HHHHHHHH
Confidence            44556677777543322 234444  8999999999998776432    1223556655 59999997642 233334  


Q ss_pred             --HHHHHhcC-C--CCCEEEEEecC
Q 023913          240 --ERDALRMR-D--GGPFIFAQVGW  259 (275)
Q Consensus       240 --~~~i~~~~-~--~~~ii~~S~~~  259 (275)
                        .+.+..+. |  ..++++.|+..
T Consensus       145 ~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         145 EVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHhcCCCcccceeeeeechh
Confidence              33343322 2  36788888753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=4.1e-09  Score=85.15  Aligned_cols=52  Identities=12%  Similarity=0.061  Sum_probs=36.6

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      .+-++|.||+|+.... ...+...+.... ....+++++||++|.|+++++..+
T Consensus       112 ip~ilv~nK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~e~Sak~~~gI~e~f~~l  163 (184)
T d1vg8a_         112 FPFVVLGNKIDLENRQ-VATKRAQAWCYS-KNNIPYFETSAKEAINVEQAFQTI  163 (184)
T ss_dssp             SCEEEEEECTTSSCCC-SCHHHHHHHHHH-TTSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCEEEEEEeecccccc-hhHHHHHHHHHH-hcCCeEEEEcCCCCcCHHHHHHHH
Confidence            3558889999987642 233333333333 347889999999999999998743

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.8e-09  Score=84.67  Aligned_cols=76  Identities=12%  Similarity=-0.024  Sum_probs=47.5

Q ss_pred             CceEEEEeCCCCCCcc--cccccc-------ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDKIP--RKGGPG-------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~--~~~~~~-------i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..++++|.+......  ......       -..+-++|.||+|+........+...+..++.  +.+.+++||++|+|+
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          79 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH--HVAYFEASAKLRLNV  156 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSH
T ss_pred             eeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhc--CCEEEEEeCCCCcCH
Confidence            6778888876542111  011000       12345788999998754323344455554443  478999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       157 ~e~f~~l  163 (173)
T d2fn4a1         157 DEAFEQL  163 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8e-09  Score=82.61  Aligned_cols=51  Identities=8%  Similarity=-0.018  Sum_probs=37.4

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+-++|.||+|+.+.. ...+++++..++. ...+++++|+++++|+++++..
T Consensus       116 ~piilVgnK~Dl~~~~-v~~~~~~~~~~~~-~~~~~~e~Sak~~~gI~e~f~~  166 (174)
T d1wmsa_         116 FPFVILGNKIDISERQ-VSTEEAQAWCRDN-GDYPYFETSAKDATNVAAAFEE  166 (174)
T ss_dssp             SCEEEEEECTTCSSCS-SCHHHHHHHHHHT-TCCCEEECCTTTCTTHHHHHHH
T ss_pred             ceEEEeccccchhhcc-CcHHHHHHHHHHc-CCCeEEEEcCCCCcCHHHHHHH
Confidence            4558889999997642 3345555565554 3468999999999999999753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=8.1e-09  Score=81.61  Aligned_cols=77  Identities=17%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCC---Ccccccc---c---cccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecC---C
Q 023913          193 DYIIYIIDVSGGD---KIPRKGG---P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGW---V  260 (275)
Q Consensus       193 ~~~vlllD~t~g~---d~~~~~~---~---~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~---~  260 (275)
                      +..|+++|.+...   .....+.   .   .-..+-+||.||+|+........+++++..++.  +.+++++||++   +
T Consensus        77 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~SAkt~~~~  154 (165)
T d1z06a1          77 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTH--SMPLFETSAKNPNDN  154 (165)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT--TCCEEECCSSSGGGG
T ss_pred             CceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHC--CCEEEEEecccCCcC
Confidence            6788888876532   1111111   0   012355788999999765333455555555554  46899999987   4


Q ss_pred             cCHHHHhcccc
Q 023913          261 IGIIFTLSITH  271 (275)
Q Consensus       261 ~g~~~l~~~~~  271 (275)
                      .++++++..+|
T Consensus       155 ~~V~e~F~~lA  165 (165)
T d1z06a1         155 DHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHC
T ss_pred             cCHHHHHHHhC
Confidence            58998886543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.70  E-value=1.3e-08  Score=84.59  Aligned_cols=170  Identities=22%  Similarity=0.139  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccch--HHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI--REDIS  156 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~--~~~~~  156 (275)
                      +..++.++||+|+||||.+-.|+..+... .++.++..|...  .+...+       -. .+-...+.+....  .++..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R--~gA~eQ-------L~-~~a~~l~v~~~~~~~~~~~~   78 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR--PAAREQ-------LR-LLGEKVGVPVLEVMDGESPE   78 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC--HHHHHH-------HH-HHHHHHTCCEEECCTTCCHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc--chHHHH-------HH-HHHHhcCCccccccccchhh
Confidence            45689999999999999999998877655 678888877643  221111       00 0111112221111  11222


Q ss_pred             HHHHHHHHhhcccccccccccChhHH--------HHHHHHHHhc-CceEEEEeCCCCCCcccccccccc--ccCEEEEec
Q 023913          157 INLGPLEELSNLFKADLLLCESGGDN--------LAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGIT--QADLLVINK  225 (275)
Q Consensus       157 ~~~~~L~~l~~~~~~d~~~~eS~G~~--------q~~~laral~-~~~vlllD~t~g~d~~~~~~~~i~--~adiivlNK  225 (275)
                      ........+......|.+++++.|..        +...+....- +..++++|++.+.+.........+  ..+-+|++|
T Consensus        79 ~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~TK  158 (207)
T d1ls1a2          79 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTK  158 (207)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEee
Confidence            21112222223446788888877731        2222333333 466788888877654332211112  246799999


Q ss_pred             CCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       226 ~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      .|-....+..+.    .....  +.||.+++  .|+..++|.
T Consensus       159 lDe~~~~G~~l~----~~~~~--~~Pi~~i~--~Gq~pedl~  192 (207)
T d1ls1a2         159 LDGDARGGAALS----ARHVT--GKPIYFAG--VSEKPEGLE  192 (207)
T ss_dssp             GGGCSSCHHHHH----HHHHH--CCCEEEEC--------CCE
T ss_pred             cCccccchHHHH----HHHHH--CCCEEEEe--CCCChhhcc
Confidence            997665433332    22232  46787776  366555443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=7.7e-09  Score=82.42  Aligned_cols=74  Identities=16%  Similarity=0.088  Sum_probs=47.0

Q ss_pred             CceEEEEeCCCCCCccc--c-c------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcC-
Q 023913          193 DYIIYIIDVSGGDKIPR--K-G------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIG-  262 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~-~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g-  262 (275)
                      +..++++|.+.-.....  . +      ...-..+-++|.||+|+........+++++..++.  +.+.+++||++|.| 
T Consensus        74 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~--~~~~~e~Saktg~gn  151 (168)
T d2atva1          74 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL--ACAFYECSACTGEGN  151 (168)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH--TSEEEECCTTTCTTC
T ss_pred             ccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHh--CCeEEEEccccCCcC
Confidence            67888899765422111  0 0      01113456789999999754223344555555555  46899999999996 


Q ss_pred             HHHHhc
Q 023913          263 IIFTLS  268 (275)
Q Consensus       263 ~~~l~~  268 (275)
                      +++++.
T Consensus       152 V~e~F~  157 (168)
T d2atva1         152 ITEIFY  157 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=6.7e-09  Score=82.52  Aligned_cols=77  Identities=12%  Similarity=-0.032  Sum_probs=48.8

Q ss_pred             CceEEEEeCCCCCC---cccccc---ccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCH
Q 023913          193 DYIIYIIDVSGGDK---IPRKGG---PGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGI  263 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~---~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~  263 (275)
                      +..|+++|.+....   ......   ...   ..+-++|.||+|+........++..+..++. ...+.+++||++|+|+
T Consensus        76 ~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_          76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-CNCAFLESSAKSKINV  154 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT-TSCEEEECBTTTTBSH
T ss_pred             ceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHh-CCCEEEEEcCCCCcCH
Confidence            67788888765321   111110   011   2344788999999765333444444555543 4678999999999999


Q ss_pred             HHHhccc
Q 023913          264 IFTLSIT  270 (275)
Q Consensus       264 ~~l~~~~  270 (275)
                      ++++..+
T Consensus       155 ~e~F~~l  161 (167)
T d1c1ya_         155 NEIFYDL  161 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.7e-09  Score=85.96  Aligned_cols=51  Identities=16%  Similarity=-0.046  Sum_probs=36.5

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+-++|.||+|+.....-..+++++..+++  +.+.+++||++|.|+++++..
T Consensus       110 ~piilvgnK~Dl~~~r~v~~~~~~~~a~~~--~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1         110 IPIMLVGNKKDLHMERVISYEEGKALAESW--NAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEECCTTCHHHHHHHHHH
T ss_pred             cceeeeccccccccccchhHHHHHHHHHHc--CCEEEEEecCCCCCHHHHHHH
Confidence            345788999998754322344555555555  367899999999999999763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2e-09  Score=86.17  Aligned_cols=92  Identities=10%  Similarity=-0.047  Sum_probs=53.1

Q ss_pred             cccChhHHHHHHHHHHhc---CceEEEEeCCCCCCccc---cccccc----cccCEEEEecCCCCccchhhHHHHHHHHH
Q 023913          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGDKIPR---KGGPGI----TQADLLVINKTDLASAIGADLAVMERDAL  244 (275)
Q Consensus       175 ~~eS~G~~q~~~laral~---~~~vlllD~t~g~d~~~---~~~~~i----~~adiivlNK~Dl~~~~~~~~~~~~~~i~  244 (275)
                      +.+++|+...-.+.+...   +..++++|.+.......   .+....    ..+-++|.||+|+....  ..++.....+
T Consensus        56 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~--~~~~~~~~~~  133 (170)
T d1i2ma_          56 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHR  133 (170)
T ss_dssp             EEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSC--CTTTSHHHHS
T ss_pred             ccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhh--hhhHHHHHHH
Confidence            334555444333333333   57888899766432211   111111    34558889999997652  2122222322


Q ss_pred             hcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          245 RMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       245 ~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +  .+.+.+++||++|.|+++++..+
T Consensus       134 ~--~~~~~~e~Sak~~~~v~e~f~~l  157 (170)
T d1i2ma_         134 K--KNLQYYDISAKSNYNFEKPFLWL  157 (170)
T ss_dssp             S--CSSEEEEEBTTTTBTTTHHHHHH
T ss_pred             H--cCCEEEEEeCCCCCCHHHHHHHH
Confidence            2  35789999999999999988654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.68  E-value=5.7e-09  Score=83.06  Aligned_cols=55  Identities=13%  Similarity=-0.129  Sum_probs=37.3

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcC---------------CCCCEEEEEecCCcCHHHHhcccce
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMR---------------DGGPFIFAQVGWVIGIIFTLSITHY  272 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~---------------~~~~ii~~S~~~~~g~~~l~~~~~~  272 (275)
                      ..+.+|+.||.|+...  .....+.+.+....               ...+++++||++|+|++++++++..
T Consensus       114 ~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~  183 (186)
T d1f6ba_         114 NVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  183 (186)
T ss_dssp             TSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            3566888999998765  33444444432110               1235899999999999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.5e-09  Score=83.28  Aligned_cols=51  Identities=18%  Similarity=0.016  Sum_probs=36.8

Q ss_pred             cCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       218 adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      +-++|.||+|+........+..++..+..  ..+++++||++|.|+++++..+
T Consensus       113 ~iilvgnK~Dl~~~~~v~~e~~~~~~~~~--~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_         113 VIALSGNKADLANKRAVDFQEAQSYADDN--SLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHHH
T ss_pred             eEEeecccccccccccccHHHHHHHHHhc--CCEEEEeeCCCCCCHHHHHHHH
Confidence            44678899998765333445555444443  4689999999999999998743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.1e-09  Score=84.37  Aligned_cols=50  Identities=20%  Similarity=0.044  Sum_probs=35.2

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      .+-++|.||+|+........+...+..++.  +.+++++||++|.|+++++.
T Consensus       109 ~piilv~nK~D~~~~~~~~~~~~~~~a~~~--~~~~~e~Sa~tg~~V~e~f~  158 (173)
T d2a5ja1         109 MVIMLIGNKSDLESRRDVKREEGEAFAREH--GLIFMETSAKTACNVEEAFI  158 (173)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCEEEEECTTTCTTHHHHHH
T ss_pred             CeEEEEecCCchhhhhhhHHHHHHHHHHHc--CCEEEEecCCCCCCHHHHHH
Confidence            345677899998654323344444444443  47899999999999999875

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.64  E-value=5.2e-09  Score=87.99  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=56.6

Q ss_pred             ccccccChhHHHHH-HHHHH--hcCceEEEEeCCCCCCcccccc----ccccccC-EEEEecCCCCccchhhHH----HH
Q 023913          172 DLLLCESGGDNLAA-NFSRE--LADYIIYIIDVSGGDKIPRKGG----PGITQAD-LLVINKTDLASAIGADLA----VM  239 (275)
Q Consensus       172 d~~~~eS~G~~q~~-~lara--l~~~~vlllD~t~g~d~~~~~~----~~i~~ad-iivlNK~Dl~~~~~~~~~----~~  239 (275)
                      ...+++++|-..-+ ...+.  .+|..|+|+|+..|...+.+..    ..+.... +|++||+|+.+......+    ++
T Consensus        90 ~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l  169 (222)
T d1zunb3          90 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY  169 (222)
T ss_dssp             EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred             EEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHH
Confidence            45566677754322 22222  3499999999998877664321    2233333 567999999875323333    33


Q ss_pred             HHHHHhcC--C-CCCEEEEEecCCcCHHH
Q 023913          240 ERDALRMR--D-GGPFIFAQVGWVIGIIF  265 (275)
Q Consensus       240 ~~~i~~~~--~-~~~ii~~S~~~~~g~~~  265 (275)
                      ...+..+.  + ..+++++|+++|.++.+
T Consensus       170 ~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         170 LKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            34444432  2 24679999999988744

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.5e-09  Score=83.82  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CceEEEEeCCCCCCcccc---cc-----ccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPRK---GG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~---~~-----~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|.+........   ..     ..-..+-++|.||+|+........+++.+..+..  +.+++++|+++|+|++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1          81 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY--GLPFMETSAKTGLNVD  158 (170)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH--TCCEEECCTTTCTTHH
T ss_pred             ceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHc--CCEEEEEeCCCCcCHH
Confidence            677888887654321110   00     1113345677899998876434455555555555  4789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       159 e~f~~l  164 (170)
T d2g6ba1         159 LAFTAI  164 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.1e-08  Score=82.05  Aligned_cols=74  Identities=15%  Similarity=-0.028  Sum_probs=43.9

Q ss_pred             CceEEEEeCCCCCCc---ccccc--ccc---cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKI---PRKGG--PGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~--~~i---~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.....   .....  ...   ..+-++|.||+|+.+......+......+.  ...+++++|+++|+|++
T Consensus        78 ~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~g~~i~  155 (175)
T d2f9la1          78 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK--NNLSFIETSALDSTNVE  155 (175)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTHH
T ss_pred             CeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcc--cCceEEEEecCCCcCHH
Confidence            567788886643211   11110  011   234566789999976532333333333333  35789999999999999


Q ss_pred             HHhc
Q 023913          265 FTLS  268 (275)
Q Consensus       265 ~l~~  268 (275)
                      +++.
T Consensus       156 e~f~  159 (175)
T d2f9la1         156 EAFK  159 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=8.4e-09  Score=81.77  Aligned_cols=75  Identities=21%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             CceEEEEeCCCCCC---ccccc-----cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~-----~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..++++|......   ....+     ...-..+-+++.||.|+.+.. ...+.+.+..++.  +.+++++|+++++|++
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~  152 (166)
T d1g16a_          76 MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKEL--GIPFIESSAKNDDNVN  152 (166)
T ss_dssp             EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHHH--TCCEEECBTTTTBSHH
T ss_pred             CEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhh-hhHHHHHHHHHhc--CCeEEEECCCCCCCHH
Confidence            67788888765421   11100     011133456788998886552 3334454444444  4799999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      ++++.+
T Consensus       153 e~f~~l  158 (166)
T d1g16a_         153 EIFFTL  158 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.4e-08  Score=80.05  Aligned_cols=50  Identities=22%  Similarity=0.067  Sum_probs=36.0

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      .+-+++.||.|..... ...+.+++..++.  +.+++++||++|+|++++++.
T Consensus       114 ~~i~~~~nk~d~~~~~-v~~~~~~~~~~~~--~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1         114 IVNMLVGNKIDKENRE-VDRNEGLKFARKH--SMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             CEEEEEEECTTSSSCC-SCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHHHH
T ss_pred             eeeEEEeecccccccc-ccHHHHHHHHHHC--CCEEEEEeCCCCCCHHHHHHH
Confidence            3447889999976542 3344455555554  368999999999999999864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2e-08  Score=81.25  Aligned_cols=76  Identities=12%  Similarity=0.019  Sum_probs=45.5

Q ss_pred             CceEEEEeCCCCCCc---ccccccc-----ccccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKI---PRKGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~~~-----i~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.-...   .......     -..+-++|.||+|+.+...            -..++..+..++++ ..+.
T Consensus        82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~-~~~~  160 (185)
T d2atxa1          82 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-ACCY  160 (185)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-CSCE
T ss_pred             ceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC-CCEE
Confidence            677888997653211   1111001     1234578899999976310            11233334444443 4678


Q ss_pred             EEEEecCCcCHHHHhcc
Q 023913          253 IFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~  269 (275)
                      +++||++|.|+++++.-
T Consensus       161 ~E~SAk~~~gv~e~F~~  177 (185)
T d2atxa1         161 VECSALTQKGLKTVFDE  177 (185)
T ss_dssp             EECCTTTCTTHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHH
Confidence            99999999999999763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=1.2e-08  Score=83.25  Aligned_cols=76  Identities=21%  Similarity=0.054  Sum_probs=47.2

Q ss_pred             CceEEEEeCCCCCCccc--cc---ccc---ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKIPR--KG---GPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~--~~---~~~---i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|++.......  ..   ...   -..+-++|.||+|+........+......+..  ..+.+++||++|.|++
T Consensus        80 ~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~e~SAk~g~gi~  157 (194)
T d2bcgy1          80 HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADAN--KMPFLETSALDSTNVE  157 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--TCCEEECCTTTCTTHH
T ss_pred             CEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhcc--CcceEEEecCcCccHH
Confidence            56788888765422111  00   011   12345788999999865333444444444433  5779999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       158 e~f~~l  163 (194)
T d2bcgy1         158 DAFLTM  163 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.7e-08  Score=80.86  Aligned_cols=77  Identities=19%  Similarity=0.190  Sum_probs=44.8

Q ss_pred             CceEEEEeCCCCCCc---cccccccc-----cccCEEEEecCCCCccchh------------hHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKI---PRKGGPGI-----TQADLLVINKTDLASAIGA------------DLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~~~i-----~~adiivlNK~Dl~~~~~~------------~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|+++|.+.....   .......+     ..+-+||.||+|+......            ..++..+..+++ ...+.
T Consensus        75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~-~~~~~  153 (177)
T d1kmqa_          75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI-GAFGY  153 (177)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc-CCcEE
Confidence            567788887653211   11111111     2345677899999764211            112233333343 34578


Q ss_pred             EEEEecCCcCHHHHhccc
Q 023913          253 IFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~~  270 (275)
                      +++||++|.|++++++..
T Consensus       154 ~E~SAkt~~gi~e~F~~i  171 (177)
T d1kmqa_         154 MECSAKTKDGVREVFEMA  171 (177)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEecCCCCcCHHHHHHHH
Confidence            999999999999998643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=2.7e-08  Score=79.09  Aligned_cols=75  Identities=15%  Similarity=-0.074  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCCCc---ccccc-----ccccccCEEEEecCCCCccc---hhhHHHHHHHHHhcCCCCCEEEEEecCCc
Q 023913          193 DYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAI---GADLAVMERDALRMRDGGPFIFAQVGWVI  261 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~-----~~i~~adiivlNK~Dl~~~~---~~~~~~~~~~i~~~~~~~~ii~~S~~~~~  261 (275)
                      +..++++|.+.....   .....     ..-..+-++|.||+|+....   ....++..+..+..  +.+++++||++|.
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~  154 (170)
T d1ek0a_          77 QAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEK--GLLFFETSAKTGE  154 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH--TCEEEECCTTTCT
T ss_pred             ceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHc--CCEEEEecCCCCc
Confidence            677888887653211   11110     01123457889999986431   12334444555554  4689999999999


Q ss_pred             CHHHHhcc
Q 023913          262 GIIFTLSI  269 (275)
Q Consensus       262 g~~~l~~~  269 (275)
                      |+++++..
T Consensus       155 gV~e~F~~  162 (170)
T d1ek0a_         155 NVNDVFLG  162 (170)
T ss_dssp             THHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2.2e-07  Score=75.90  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.4

Q ss_pred             EEEEEcCCcchHHHHHHHHHhc
Q 023913           83 TVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .|+|+|++|||||||++.|++-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999984

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.43  E-value=4.3e-08  Score=84.49  Aligned_cols=132  Identities=18%  Similarity=0.134  Sum_probs=72.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhc---cCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALCKF---LRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~---l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
                      -++|+|..|+|||||+..|+..   ....|++. .++......+.+..+.+.+...-          .            
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~----------~------------   60 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGV----------A------------   60 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEE----------E------------
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeec----------c------------
Confidence            5899999999999999999643   22114332 12222223344444443321110          0            


Q ss_pred             HHHHHhhcccccccccccChhHHH---HHHHHHHhcCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCccc
Q 023913          160 GPLEELSNLFKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAI  232 (275)
Q Consensus       160 ~~L~~l~~~~~~d~~~~eS~G~~q---~~~laral~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~~~  232 (275)
                          .+ ........+++++|-..   -+.-|...+|..|+++|+..|...+...    ..+...+-++++||+|.....
T Consensus        61 ----~~-~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~~~~  135 (267)
T d2dy1a2          61 ----PL-LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDY  135 (267)
T ss_dssp             ----EE-EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCH
T ss_pred             ----cc-cccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccccccc
Confidence                00 11223445666666432   1222233349999999999998765432    233467789999999975332


Q ss_pred             hhhHHHHHHH
Q 023913          233 GADLAVMERD  242 (275)
Q Consensus       233 ~~~~~~~~~~  242 (275)
                      ...++.+++.
T Consensus       136 ~~~l~~~~~~  145 (267)
T d2dy1a2         136 YALLEDLRST  145 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhhhhhHHHH
Confidence            2333334333

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=1.7e-08  Score=80.61  Aligned_cols=76  Identities=16%  Similarity=0.103  Sum_probs=42.9

Q ss_pred             CceEEEEeCCCCCCc--cccc------cccccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHH
Q 023913          193 DYIIYIIDVSGGDKI--PRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGII  264 (275)
Q Consensus       193 ~~~vlllD~t~g~d~--~~~~------~~~i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~  264 (275)
                      +..|+++|.+.....  ....      ......+-++|.||.|+........+.+.+.....  +.+++++|+++|+|++
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~g~gv~  157 (173)
T d2fu5c1          80 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDY--GIKFMETSAKANINVE  157 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHH--TCEEEECCC---CCHH
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhc--CCEEEEEeCCCCCCHH
Confidence            677888887643211  1100      01123456788999999865333344444444443  5789999999999999


Q ss_pred             HHhccc
Q 023913          265 FTLSIT  270 (275)
Q Consensus       265 ~l~~~~  270 (275)
                      +++..+
T Consensus       158 e~f~~l  163 (173)
T d2fu5c1         158 NAFFTL  163 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.1e-07  Score=74.54  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      ++++|+|++|||||||++.|+..+... .++.+..++...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            689999999999999999999987766 678888887764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1e-07  Score=76.65  Aligned_cols=76  Identities=13%  Similarity=0.008  Sum_probs=43.5

Q ss_pred             CceEEEEeCCCCCCc---ccccccc-----ccccCEEEEecCCCCccchh------------hHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDKI---PRKGGPG-----ITQADLLVINKTDLASAIGA------------DLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d~---~~~~~~~-----i~~adiivlNK~Dl~~~~~~------------~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.....   .......     -..+-+||.||+|+......            .........++. ...+.
T Consensus        78 ~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~  156 (183)
T d1mh1a_          78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKY  156 (183)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEE
T ss_pred             ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc-CCceE
Confidence            567888887643211   1111111     12355778999998654110            111222223333 34689


Q ss_pred             EEEEecCCcCHHHHhcc
Q 023913          253 IFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~  269 (275)
                      +++||++|.|+++++..
T Consensus       157 ~E~SAk~~~~V~e~F~~  173 (183)
T d1mh1a_         157 LECSALTQRGLKTVFDE  173 (183)
T ss_dssp             EECCTTTCTTHHHHHHH
T ss_pred             EEcCCCCCcCHHHHHHH
Confidence            99999999999999763

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.29  E-value=2.3e-07  Score=78.81  Aligned_cols=99  Identities=15%  Similarity=0.064  Sum_probs=54.0

Q ss_pred             cccccccChhHHHHH-HHHHHh--cCceEEEEeCCCCCCccc-------c----ccccccccCE-EEEecCCCCccc--h
Q 023913          171 ADLLLCESGGDNLAA-NFSREL--ADYIIYIIDVSGGDKIPR-------K----GGPGITQADL-LVINKTDLASAI--G  233 (275)
Q Consensus       171 ~d~~~~eS~G~~q~~-~laral--~~~~vlllD~t~g~d~~~-------~----~~~~i~~adi-ivlNK~Dl~~~~--~  233 (275)
                      ....+++++|-..-+ ...+++  ++..++++|+..|...+.       +    ....+....+ +++||+|+....  .
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e  181 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  181 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhH
Confidence            345667777754322 222233  389999999987742211       1    0111234445 679999997431  1


Q ss_pred             hh----HHHHHHHHHhcC---C--CCCEEEEEecCCcCHHHHhcc
Q 023913          234 AD----LAVMERDALRMR---D--GGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       234 ~~----~~~~~~~i~~~~---~--~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      ..    .+++...++++.   +  ..+++++||++|+|+.++++-
T Consensus       182 ~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         182 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            12    233344444432   2  357999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.27  E-value=1.7e-07  Score=81.01  Aligned_cols=136  Identities=15%  Similarity=0.057  Sum_probs=69.0

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh---ccCCCCcEEEEeccCCCCChHHHHHhccccCchhHHHHHhcCCCccchHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK---FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISI  157 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g---~l~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~  157 (275)
                      -.-++|+|..|||||||+..|+-   ....-|++. .+.......+.+..|.+.+-..          +..         
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~----------~~~---------   65 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAA----------VTT---------   65 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCS----------EEE---------
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccc----------eee---------
Confidence            34689999999999999999863   333224442 1111111222333333322100          000         


Q ss_pred             HHHHHHHhhcccccccccccChhHHH---HHHHHHHhcCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCCc
Q 023913          158 NLGPLEELSNLFKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLAS  230 (275)
Q Consensus       158 ~~~~L~~l~~~~~~d~~~~eS~G~~q---~~~laral~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~~  230 (275)
                             + ........+++++|-..   -+.-+...+|..|+++|+..|...+...    ......+-++++||+|...
T Consensus        66 -------~-~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          66 -------C-FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             -------E-EETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred             -------e-ccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence                   0 11223334444444321   0111223349999999999998876532    2334678899999999876


Q ss_pred             cchhhHHHHHHHHHhcC
Q 023913          231 AIGADLAVMERDALRMR  247 (275)
Q Consensus       231 ~~~~~~~~~~~~i~~~~  247 (275)
                      .   +.+.+.+.+++..
T Consensus       138 a---d~~~~l~ei~~~l  151 (276)
T d2bv3a2         138 A---DLWLVIRTMQERL  151 (276)
T ss_dssp             C---CHHHHHHHHHHTT
T ss_pred             c---ccchhHHHHHHHh
Confidence            5   4455555565544

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.6e-07  Score=75.46  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=44.7

Q ss_pred             CceEEEEeCCCCCC---ccccccccc-----cccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDK---IPRKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~~~i-----~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..|++.|.+....   ........+     ..+-++|.||+|+.....            -..++..+..++++ ..+.
T Consensus        75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-~~~y  153 (179)
T d1m7ba_          75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-AATY  153 (179)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-CSEE
T ss_pred             hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-CCeE
Confidence            56788888765421   111111111     234478899999864310            11234444445543 4678


Q ss_pred             EEEEecCCc-CHHHHhcc
Q 023913          253 IFAQVGWVI-GIIFTLSI  269 (275)
Q Consensus       253 i~~S~~~~~-g~~~l~~~  269 (275)
                      +++||+++. |++++++.
T Consensus       154 ~E~SAk~~~n~i~~~F~~  171 (179)
T d1m7ba_         154 IECSALQSENSVRDIFHV  171 (179)
T ss_dssp             EECBTTTBHHHHHHHHHH
T ss_pred             EEEeCCCCCcCHHHHHHH
Confidence            999999998 69999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.3e-08  Score=78.12  Aligned_cols=76  Identities=16%  Similarity=0.080  Sum_probs=45.5

Q ss_pred             CceEEEEeCCCCCC---cccccccc-----ccccCEEEEecCCCCccch------------hhHHHHHHHHHhcCCCCCE
Q 023913          193 DYIIYIIDVSGGDK---IPRKGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGPF  252 (275)
Q Consensus       193 ~~~vlllD~t~g~d---~~~~~~~~-----i~~adiivlNK~Dl~~~~~------------~~~~~~~~~i~~~~~~~~i  252 (275)
                      +..++++|.+.-..   ........     -..+-++|.||+|+.+...            -..+..++..+++ ...+.
T Consensus        76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~  154 (191)
T d2ngra_          76 DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL-KAVKY  154 (191)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT-TCSCE
T ss_pred             ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc-CCCeE
Confidence            67788888765431   11111111     1234468899999875411            1123333344444 34679


Q ss_pred             EEEEecCCcCHHHHhcc
Q 023913          253 IFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       253 i~~S~~~~~g~~~l~~~  269 (275)
                      +++||+++.|++++++.
T Consensus       155 ~e~SAk~~~~V~e~f~~  171 (191)
T d2ngra_         155 VECSALTQKGLKNVFDE  171 (191)
T ss_dssp             EECCTTTCTTHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHH
Confidence            99999999999999863

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=1.3e-06  Score=70.73  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      +.|+|+|++|||||||+|.|++.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999985

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.13  E-value=6.5e-07  Score=70.60  Aligned_cols=39  Identities=18%  Similarity=0.118  Sum_probs=32.7

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      .+++|+|++|||||||++.|+..++.. .++.++.++...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~   41 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   41 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence            478999999999999999999988877 688888777643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=9.2e-07  Score=74.68  Aligned_cols=97  Identities=15%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             ccccccccChhHHHHH-HHHHHhc--CceEEEEeCCCCC-------Cccccc----cccccccCE-EEEecCCCCccchh
Q 023913          170 KADLLLCESGGDNLAA-NFSRELA--DYIIYIIDVSGGD-------KIPRKG----GPGITQADL-LVINKTDLASAIGA  234 (275)
Q Consensus       170 ~~d~~~~eS~G~~q~~-~laral~--~~~vlllD~t~g~-------d~~~~~----~~~i~~adi-ivlNK~Dl~~~~~~  234 (275)
                      .....+++++|-..=+ ...+++.  |..|+|+|+..|.       ..|.+.    ...+....+ +++||+|+.....+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~  162 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES  162 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHH
Confidence            3456677788865432 2333443  8999999988762       222211    123345554 56999999865322


Q ss_pred             hH----HHHHHHHHhcCC---CCCEEEEEecCCcCHHHH
Q 023913          235 DL----AVMERDALRMRD---GGPFIFAQVGWVIGIIFT  266 (275)
Q Consensus       235 ~~----~~~~~~i~~~~~---~~~ii~~S~~~~~g~~~l  266 (275)
                      ..    +++.+.+..+..   ..+++++|+..|.++-+.
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~  201 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  201 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceec
Confidence            22    333444444332   367899999999886543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.7e-06  Score=76.99  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.7

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      --++|+|.+|+|||||+|.|.|.-
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            459999999999999999999963

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.8e-06  Score=64.82  Aligned_cols=76  Identities=11%  Similarity=0.066  Sum_probs=43.9

Q ss_pred             cCceEEEEeCCCCCCc--cccccccc---------cccCEEEEecCCCCccc--hhhHHHHHHHHHhcCCCCCEEEEEec
Q 023913          192 ADYIIYIIDVSGGDKI--PRKGGPGI---------TQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVG  258 (275)
Q Consensus       192 ~~~~vlllD~t~g~d~--~~~~~~~i---------~~adiivlNK~Dl~~~~--~~~~~~~~~~i~~~~~~~~ii~~S~~  258 (275)
                      ++..|++.|.+...-.  .......+         ..+-++|.||.|+....  .-..++..+..++. ...+.+++||+
T Consensus        71 ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~-~~~~~~e~SAk  149 (175)
T d2bmja1          71 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADM-KRCSYYETCAT  149 (175)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTS-TTEEEEEEBTT
T ss_pred             cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHh-CCCeEEEeCCC
Confidence            3788889997754211  00000111         12346788887764321  11223444444444 35689999999


Q ss_pred             CCcCHHHHhc
Q 023913          259 WVIGIIFTLS  268 (275)
Q Consensus       259 ~~~g~~~l~~  268 (275)
                      ++.|+++++.
T Consensus       150 ~~~~v~~~F~  159 (175)
T d2bmja1         150 YGLNVDRVFQ  159 (175)
T ss_dssp             TTBTHHHHHH
T ss_pred             CCcCHHHHHH
Confidence            9999999876

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.86  E-value=1.1e-05  Score=66.81  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=53.1

Q ss_pred             ccccccccChhHHHH-HHHHHHh--cCceEEEEeCCCCCCccc-------cc----cccccccC-EEEEecCCCCccc--
Q 023913          170 KADLLLCESGGDNLA-ANFSREL--ADYIIYIIDVSGGDKIPR-------KG----GPGITQAD-LLVINKTDLASAI--  232 (275)
Q Consensus       170 ~~d~~~~eS~G~~q~-~~laral--~~~~vlllD~t~g~d~~~-------~~----~~~i~~ad-iivlNK~Dl~~~~--  232 (275)
                      .....+++++|-..- -...+++  +|..|+|+|+..|...+.       +.    ...+.... ++++||+|+....  
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCcccc
Confidence            344556778885432 2223333  399999999988843211       10    11123333 5569999997531  


Q ss_pred             hhhHHHHHHHHH----hcC---CCCCEEEEEecCCcCHH
Q 023913          233 GADLAVMERDAL----RMR---DGGPFIFAQVGWVIGII  264 (275)
Q Consensus       233 ~~~~~~~~~~i~----~~~---~~~~ii~~S~~~~~g~~  264 (275)
                      ....+.+...+.    .+.   ...+++++|+..|.++-
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            122333333333    222   34678999999988764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.82  E-value=6.6e-06  Score=69.81  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .-.++|+|.+|+|||||+|.|+|.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            457899999999999999999996

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.2e-06  Score=66.14  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~  118 (275)
                      .+.|+||+|+|||||++.++..+... ..+.+...++
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            58999999999999999999988766 5666655443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=1.3e-05  Score=63.55  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      .++|+|..|+|||||++.+..-..|+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t   29 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAG   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC
Confidence            57999999999999999988765565

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.4e-05  Score=63.72  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      |.+++|+||+|||||||++.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999998765

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=9.3e-06  Score=71.83  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             cccccChhHH---HHHHHHHHhcCceEEEEeCCCCCCccccc----cccccccCEEEEecCCCC
Q 023913          173 LLLCESGGDN---LAANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLA  229 (275)
Q Consensus       173 ~~~~eS~G~~---q~~~laral~~~~vlllD~t~g~d~~~~~----~~~i~~adiivlNK~Dl~  229 (275)
                      .-+++++|-.   .-+.-|..++|..|+++|+..|...+...    ......+-++++||+|+.
T Consensus        98 inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          98 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            3356677742   22233334569999999999998765432    122356779999999975

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=2.4e-05  Score=60.90  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .|.++.|.|++||||||+.+.|...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.51  E-value=2.6e-05  Score=60.98  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEE
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i  113 (275)
                      .+++|.|++||||||+.+.|+..+... .++.+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~   34 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM   34 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            589999999999999999999887655 44443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.50  E-value=2.4e-05  Score=60.99  Aligned_cols=26  Identities=35%  Similarity=0.388  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...++|+|++|||||||.+.|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999998763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.7e-05  Score=60.42  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999999998763

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.47  E-value=2.8e-05  Score=60.35  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+|.+|.|+|++||||||+-+.|+..+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4589999999999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.43  E-value=3.3e-05  Score=59.56  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++.|+|++||||||+.+.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999998764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.43  E-value=3.4e-05  Score=58.79  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .++.|.|++|||||||.+.|+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999988653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.41  E-value=4.2e-05  Score=59.27  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+|.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=4.4e-05  Score=63.45  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCC-CCcEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA  112 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g~i~  112 (275)
                      +|.+.+++|++|+|||||+|.|.+.... +|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5889999999999999999999986443 35543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.36  E-value=5.4e-05  Score=58.77  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +++-.++|+|++||||||+.+.|+..+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3477899999999999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.31  E-value=4.5e-05  Score=58.97  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..++|+|++||||||+.+.|+..+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998765

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=5.8e-05  Score=59.67  Aligned_cols=29  Identities=34%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             CCc-EEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           80 RAF-TVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        80 ~ge-iv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      +|+ +|||.|+.|||||||.+.|...+...
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            354 68899999999999999999877654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.30  E-value=9.6e-05  Score=64.61  Aligned_cols=37  Identities=19%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEecc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d  117 (275)
                      +.-+.|+|+.||||||||+.|++.++++.++..+...
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            4458999999999999999999999888777776544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=1e-05  Score=63.77  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+++|+|+|||||||+|.+|.-.+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4889999999999999999986554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=8.4e-05  Score=59.47  Aligned_cols=27  Identities=22%  Similarity=0.185  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.+++.|+||+||||||+.+.|+..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            347899999999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=5.4e-05  Score=59.88  Aligned_cols=28  Identities=39%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      +|-++.|+|++||||||+-+.|+..+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5779999999999999999999987653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.5e-05  Score=56.70  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.2

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.|+||+||||||+-+.|+..+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            478889999999999999998763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.0001  Score=60.16  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +|.++.|+||+|||||||++.|+...+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            478999999999999999999988754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.18  E-value=4.3e-05  Score=63.69  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCC-CCcEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLA  112 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~-~g~i~  112 (275)
                      ++.+.+|+|++|+|||||+|.|++-... +|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5788999999999999999999986443 25443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.15  E-value=0.00012  Score=57.15  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=23.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      .++.|.|++||||||+.+.|+..+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~   28 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            468899999999999999999988655

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.15  E-value=9.5e-05  Score=58.95  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+++|+||+||||||+.+.|+..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.06  E-value=0.00014  Score=58.08  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++.++.|+||+||||||+.+.|+..+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.06  E-value=0.00015  Score=57.69  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +|-.++|+||+||||||+-+.|+..+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            56778899999999999999999754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00012  Score=62.41  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .+.+|+|+|||||||+|.+|.-+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            48999999999999999988543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00021  Score=56.00  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+|.++.|-|+.|||||||.+.++.-+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            5799999999999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00025  Score=56.04  Aligned_cols=27  Identities=19%  Similarity=0.103  Sum_probs=22.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..+-.++.++|++||||||+.+.++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            345679999999999999999988654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00014  Score=58.02  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      +++++|.+|||||||.+.|+..+... -++.+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence            68999999999999999999876533 3444443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00016  Score=57.66  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=21.2

Q ss_pred             EEEEcCCcchHHHHHHHHHhccCC
Q 023913           84 VGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      ++|+||+|||||||++.|+...+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc
Confidence            689999999999999999887543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00017  Score=58.38  Aligned_cols=24  Identities=21%  Similarity=0.555  Sum_probs=21.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++||.|+.|||||||.+.|...+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999987664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00026  Score=57.16  Aligned_cols=40  Identities=23%  Similarity=0.113  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIF  119 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~~  119 (275)
                      +|.+++|-|+.||||||+++.|...+...| ...+...++.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~   41 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG   41 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            588999999999999999999999776543 3333434443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.98  E-value=0.00068  Score=60.69  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             ccCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      ...+.-++.|+||.||||||++..++..+... .+|.-+..++.
T Consensus       154 ~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE  197 (401)
T d1p9ra_         154 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  197 (401)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             HhhhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc
Confidence            34567799999999999999999999977544 67766665554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.96  E-value=0.00026  Score=58.06  Aligned_cols=40  Identities=18%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      ..+|.++.|.|++|||||||...++-..... ..+.++..+
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            3579999999999999999998877654333 567666644

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.93  E-value=0.00019  Score=56.28  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00029  Score=58.60  Aligned_cols=33  Identities=21%  Similarity=0.139  Sum_probs=26.0

Q ss_pred             ccccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        71 ~~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +-|...+.....++.|+|||.+||||+||.+.-
T Consensus        31 VpNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          31 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEECCCceEEEEeccCchhhHHHHHHHHH
Confidence            444445555678999999999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00027  Score=58.54  Aligned_cols=53  Identities=21%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhccc
Q 023913          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSIT  270 (275)
Q Consensus       216 ~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~~  270 (275)
                      ...-+||+||+||++.  .+.+.+.+.........+++.+|+++++|++++.+++
T Consensus        41 ~i~pvIvlnK~DL~~~--~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          41 ELETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TCEEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             CCCEEEEEeCcccCCH--HHHHHHHHhhcccccceeEEEeccccchhHhhHHHHh
Confidence            3456899999999987  5666666666666667889999999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00021  Score=56.78  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.7

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .++.|+||+||||||..+.|+..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00016  Score=56.27  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=21.3

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.+.|+|++||||||+-+.|+..+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhC
Confidence            3477889999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.89  E-value=0.0002  Score=55.69  Aligned_cols=22  Identities=41%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             EEEEcCCcchHHHHHHHHHhcc
Q 023913           84 VGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.|+|++||||||+-+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999999876

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00024  Score=62.60  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHH
Q 023913           81 AFTVGIGGPVGTGKTALMLALC  102 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~  102 (275)
                      +.+.+|+|+|||||||+|.+|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4489999999999999999984

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00026  Score=56.22  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..++|+||+|||||||++.|+...+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999997544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00048  Score=56.02  Aligned_cols=36  Identities=17%  Similarity=0.102  Sum_probs=29.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEE
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAV  114 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~  114 (275)
                      .+|.+++|-|+.||||||+.+.|...+...| .+.+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3688999999999999999999999876553 44443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.85  E-value=0.00024  Score=56.06  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00026  Score=57.00  Aligned_cols=26  Identities=38%  Similarity=0.584  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .++++|.||+||||||+-+.|+.-+.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36999999999999999999998763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.82  E-value=0.00022  Score=56.60  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||+.+.|+..+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998865

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00026  Score=56.60  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             EEEEcCCcchHHHHHHHHHhccC
Q 023913           84 VGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++|+||+|||||||.+.|+...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999988654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.77  E-value=0.0004  Score=58.91  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=21.2

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      -.+||+|.+.+|||||+++|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999986

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.74  E-value=0.00031  Score=54.85  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.1

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+|++||||||+-+.|+..+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999998765

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00038  Score=54.56  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||..+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.00039  Score=54.64  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||+-+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00038  Score=55.16  Aligned_cols=23  Identities=30%  Similarity=0.667  Sum_probs=20.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      -++||+|+.||||||+.+.|..+
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            37899999999999999988653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.66  E-value=0.00045  Score=57.18  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+.|.||+|||||||.+.|++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4588999999999999999999764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00047  Score=54.28  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|+||+||||||+.+.|+..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36788999999999999999865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.65  E-value=0.00046  Score=55.09  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.-.++|+||+||||||+-+.|+..+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999865

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.65  E-value=0.00021  Score=61.31  Aligned_cols=38  Identities=13%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      +-+++||.|++||||||+.+.|...++.. -+++++..|
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~D   41 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   41 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCC
Confidence            45799999999999999999998877654 355555544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.54  E-value=0.0012  Score=52.55  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=26.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEec
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTN  116 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~  116 (275)
                      +|+|-|.-||||||+++.|...+...| .+.+...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~   36 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            588999999999999999998776553 4555443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00089  Score=57.86  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCC--C-CcEEEEeccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDI  118 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~--~-g~i~i~~~d~  118 (275)
                      --++||.|+.|||||||-+.|..++..  . -++.++..|-
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence            458999999999999999999988752  2 4566666553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.54  E-value=0.00053  Score=54.39  Aligned_cols=26  Identities=38%  Similarity=0.594  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .-+++|-|..||||||+++.|...+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.49  E-value=0.0022  Score=52.42  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      ...+.|.||+|+||||+++.++..+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            4589999999999999999999988755

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00072  Score=53.12  Aligned_cols=27  Identities=26%  Similarity=0.189  Sum_probs=23.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ..+|.++.|.|++|+|||||...++..
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            356999999999999999999888754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00088  Score=54.51  Aligned_cols=30  Identities=33%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g  109 (275)
                      +|.+++|-|+-||||||+++.|...+...+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            689999999999999999999998877554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0018  Score=54.64  Aligned_cols=53  Identities=23%  Similarity=0.211  Sum_probs=38.0

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC-CCCcEEEEeccCCCCChHHHHHhcccc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      ..|.++-|.|++|||||||.-.++.... +.+.+.++..+-. . +.++.+.+|+-
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~-~-~~~~a~~~Gvd  105 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-L-DPIYARKLGVD  105 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-C-CHHHHHHTTCC
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc-c-CHHHHHHhCCC
Confidence            4589999999999999999877777554 4477766665532 2 33556667753

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.00069  Score=54.60  Aligned_cols=23  Identities=30%  Similarity=0.684  Sum_probs=20.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .++||+|..||||||+.+.|..+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            47999999999999999988643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.43  E-value=0.0018  Score=54.78  Aligned_cols=53  Identities=23%  Similarity=0.197  Sum_probs=39.7

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCCCChHHHHHhcccc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (275)
                      +.|.++-|-|++|||||||.-.++...+.. +.+.++..+-. .+ .++.+++|+-
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~-~~-~~~a~~~Gvd  108 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LD-PVYARALGVN  108 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CC-HHHHHHTTCC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCcc-CC-HHHHHHhCCC
Confidence            468899999999999999998888765544 77877776642 33 3566777763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00051  Score=55.98  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++.+++|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999999775

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.43  E-value=0.00067  Score=54.70  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +++|.||+||||||+-+.|+..+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999763

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00089  Score=54.08  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .++||+|..||||||+.+.|..+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            38999999999999999988754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.34  E-value=0.00074  Score=58.08  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhc
Q 023913           83 TVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .|||+|.+.+|||||+|+|++.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999999886

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.0011  Score=54.44  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...+.|.||+|+||||+.++|+..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.0019  Score=54.62  Aligned_cols=52  Identities=19%  Similarity=0.226  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC-CCCcEEEEeccCCCCChHHHHHhccc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGA  132 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~g~i~i~~~d~~~~~~~~~~~~ig~  132 (275)
                      +.|.++-|.|++|+|||||.-.++.... ..+.+.++..+-. .+ .++.+.+|.
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~-~~-~e~a~~~Gv  110 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA-LD-PDYAKKLGV  110 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC-CC-HHHHHHHTC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc-CC-HHHHHHhCC
Confidence            4599999999999999999766666544 4477666665532 33 455666665

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.30  E-value=0.0011  Score=53.73  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=25.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+|-++-|+|.+|||||||-+.|...+.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999999999986553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.0011  Score=53.99  Aligned_cols=26  Identities=38%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.+.|.||+|+|||||+++++..+.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            35688999999999999999998653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.29  E-value=0.0014  Score=53.97  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHh
Q 023913           81 AFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..++.|+|||.+||||+||.+.=
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHH
Confidence            35899999999999999997653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.26  E-value=0.001  Score=56.88  Aligned_cols=44  Identities=11%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             cccCEEEEecCCC--CccchhhHHHHHHHHHhcCCCCCEEEEEecC
Q 023913          216 TQADLLVINKTDL--ASAIGADLAVMERDALRMRDGGPFIFAQVGW  259 (275)
Q Consensus       216 ~~adiivlNK~Dl--~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~  259 (275)
                      ..+-++|+|+.|.  ........+.+.+.+.+..++.+++++|++.
T Consensus       214 ~KP~i~v~Nv~E~~~~~~~n~~~~~v~~~~~~~~~~~~vi~isa~~  259 (296)
T d1ni3a1         214 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  259 (296)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             CCCeeeeccccchhhhhhhhHHHHHHHHHHHhhCCCCeEEEEEHHH
Confidence            4678999999753  2222234567778888888889999999853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.11  E-value=0.0013  Score=53.68  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +-+.|.||+|+|||||.+++++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3477999999999999999998654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0012  Score=53.60  Aligned_cols=24  Identities=50%  Similarity=0.548  Sum_probs=21.2

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.+.|.||+|+|||||+++++..+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            348899999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.0013  Score=53.77  Aligned_cols=27  Identities=33%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      +-+.|.||+|+|||||.++|+..+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCC
Confidence            358899999999999999999876544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.013  Score=48.35  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc----------CCC-CcEEEEeccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL----------RDK-YSLAAVTNDI  118 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l----------~~~-g~i~i~~~d~  118 (275)
                      +|.++.|.|++|+|||||+-.|+-.+          ... +.+.+...+.
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~   77 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   77 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc
Confidence            48999999999999999997766432          112 5777776554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.95  E-value=0.0019  Score=52.93  Aligned_cols=27  Identities=26%  Similarity=0.142  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.++.|.||.|+|||||++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            577899999999999999999887543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0018  Score=52.21  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..+|.++.|.|++|||||||...++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            35699999999999999999987764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.85  E-value=0.037  Score=46.20  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ....+++|.|.-|.|||||.+.+...
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34679999999999999999998754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.78  E-value=0.005  Score=51.16  Aligned_cols=41  Identities=7%  Similarity=-0.014  Sum_probs=31.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhc-cCC-CCcEEEEeccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKF-LRD-KYSLAAVTNDI  118 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~-l~~-~g~i~i~~~d~  118 (275)
                      ..+|+++.|.|++|+|||||+..++-- ... ..++.+...+.
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~   74 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeecc
Confidence            467999999999999999998888753 223 35788887664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.77  E-value=0.0014  Score=54.06  Aligned_cols=24  Identities=38%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.68  E-value=0.0013  Score=54.51  Aligned_cols=53  Identities=11%  Similarity=-0.041  Sum_probs=36.4

Q ss_pred             ccCEEEEecCCCCccchhhHHHHHHHHHhcC--CCCCEEEEEecCCcCHHHHhcccc
Q 023913          217 QADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVGWVIGIIFTLSITH  271 (275)
Q Consensus       217 ~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~--~~~~ii~~S~~~~~g~~~l~~~~~  271 (275)
                      ..-+||+||+||.+.  .+.+...+.+.+.+  .+.+++.+|++++.|+++|.+.+.
T Consensus        42 i~pvIvlnK~DL~~~--~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          42 IQPIICITKMDLIED--QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             CEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGT
T ss_pred             CCEEEEEeccccccc--HHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhhc
Confidence            355899999999876  33332222222222  267999999999999999887553

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.65  E-value=0.0026  Score=50.93  Aligned_cols=40  Identities=20%  Similarity=0.138  Sum_probs=28.8

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh--ccCCCCcEEEEecc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK--FLRDKYSLAAVTND  117 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g--~l~~~g~i~i~~~d  117 (275)
                      ..+|.++.|.|++|+|||||...++.  .......+.++..+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            45799999999999999999865543  32223467766654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.58  E-value=0.0029  Score=51.40  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..+|.++.|.|++|||||||.-.++-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            35699999999999999999876653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0028  Score=53.99  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      -++||.|+.|||||||.+.|...+
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHH
Confidence            488999999999999998887654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.57  E-value=0.0034  Score=51.22  Aligned_cols=23  Identities=13%  Similarity=0.018  Sum_probs=20.6

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .++||+|..||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.55  E-value=0.0031  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+|||+|.+.|+..+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECcCCCCHHHHHHHHhhccc
Confidence            488999999999999999998654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0028  Score=51.28  Aligned_cols=24  Identities=33%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+||||+.++++..+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            478999999999999999987644

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0035  Score=49.21  Aligned_cols=20  Identities=15%  Similarity=0.277  Sum_probs=18.4

Q ss_pred             EEEEEcCCcchHHHHHHHHH
Q 023913           83 TVGIGGPVGTGKTALMLALC  102 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~  102 (275)
                      .+.|+|..|+|||||++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999999984

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.50  E-value=0.002  Score=55.58  Aligned_cols=26  Identities=35%  Similarity=0.360  Sum_probs=23.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .=+.|.|++|+|||||.+.+.+++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            34899999999999999999998863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.46  E-value=0.0036  Score=53.15  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=21.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhcc
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      +.++|+|.-+||||||||+|+|.-
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999963

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.41  E-value=0.0038  Score=53.54  Aligned_cols=38  Identities=21%  Similarity=0.306  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~  118 (275)
                      +..-+.|.||+|+|||+|.++|+..+... -+.+...++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~-~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAP-FIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC-EEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccc-hhccccccc
Confidence            34457789999999999999999975422 344455444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.003  Score=51.55  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.7

Q ss_pred             EEEEEcCCcchHHHHHHHHHhcc
Q 023913           83 TVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+.|.||+|+||||+.+.++..+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0038  Score=50.34  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+||||++++++..+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            377999999999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.35  E-value=0.0039  Score=51.84  Aligned_cols=24  Identities=42%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+|||+|.+.|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            489999999999999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.29  E-value=0.0045  Score=52.05  Aligned_cols=26  Identities=35%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+-.++|+|.+++|||||+|.|.|..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            46679999999999999999999963

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.26  E-value=0.0044  Score=49.71  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=23.0

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..+|.++.|.|++|+|||||...++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45699999999999999999988874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.004  Score=52.08  Aligned_cols=25  Identities=40%  Similarity=0.399  Sum_probs=22.1

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .-+.|.||+|+|||+|.+.|+..+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC
Confidence            4578999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0059  Score=49.37  Aligned_cols=26  Identities=35%  Similarity=0.323  Sum_probs=23.2

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      ..+|.++.|.|++|||||||...++.
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999988874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.16  E-value=0.0054  Score=49.72  Aligned_cols=29  Identities=10%  Similarity=0.056  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHH-hccCCC-C
Q 023913           81 AFTVGIGGPVGTGKTALMLALC-KFLRDK-Y  109 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~-g~l~~~-g  109 (275)
                      -..+.|+|..|||||||++.+. +...|+ |
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            3468999999999999999875 344466 5

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.13  E-value=0.0049  Score=52.03  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      -+.++|+|.-.||||||||+|+|.
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCC
Confidence            446899999999999999999995

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0055  Score=49.75  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~  107 (275)
                      .+++|=|.-||||||+++.|...+..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            47899999999999999999987653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0047  Score=52.30  Aligned_cols=28  Identities=32%  Similarity=0.264  Sum_probs=24.6

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..+.-+|+|+|+-++|||||||.|+|..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4456799999999999999999999864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.02  E-value=0.013  Score=46.32  Aligned_cols=53  Identities=19%  Similarity=0.167  Sum_probs=35.5

Q ss_pred             ccccCEEEEecCCCCcc--chhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          215 ITQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~--~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..-++||+..++....  .....+.+...++..++..+++..||.- .+.+++.+
T Consensus       136 ~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl-~n~~~~~~  190 (202)
T d2p6ra3         136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA-PNVTEIAE  190 (202)
T ss_dssp             GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC-TTHHHHHH
T ss_pred             hhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCC-CcHHHHHH
Confidence            45567888888776543  1234566777888889999999999853 33454443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0059  Score=50.83  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -+.|.||+|+|||+|.+.++..+.
T Consensus        40 giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eeEEecCCCCCchHHHHHHHHHhC
Confidence            378999999999999999999753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.98  E-value=0.006  Score=48.15  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=25.3

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      ....+...|.-+.|.|++|+|||||...|+..
T Consensus         6 H~~~v~~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_           6 HGVLVDIYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            34445567888999999999999998777653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.94  E-value=0.032  Score=45.91  Aligned_cols=39  Identities=26%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      .+++|.|.=|+||||+--.|+..+... -+|.++..|++.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            368899999999999998888877766 579999888763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.88  E-value=0.0058  Score=48.31  Aligned_cols=32  Identities=25%  Similarity=0.238  Sum_probs=25.7

Q ss_pred             cccccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      +........|.-+.|.|++|+|||||...|+.
T Consensus         6 ~H~~~v~~~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           6 IHGVLLEVFGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34445566788899999999999999877765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.77  E-value=0.0086  Score=50.06  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..-+.|.||+|+|||+|.+.+++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34588999999999999999999764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.65  E-value=0.0091  Score=52.38  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++...+.|.||+|+|||||.+.|++.+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4577999999999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.01  Score=46.04  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             EEEEEcCCcchHHHHHHHHHhc
Q 023913           83 TVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .+.|+|..|+|||||++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.35  E-value=0.14  Score=40.35  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             EEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           83 TVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        83 iv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      +++|+ |.-|+||||+--.|+..+... .++.++..|+..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            56666 899999999999999887755 678888877654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.31  E-value=0.011  Score=46.38  Aligned_cols=31  Identities=29%  Similarity=0.244  Sum_probs=24.7

Q ss_pred             cccccCCCcEEEEEcCCcchHHHHHHHHHhc
Q 023913           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (275)
Q Consensus        74 ~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~  104 (275)
                      .......|.-+.|.|++|+|||||.-.|+..
T Consensus         8 ~~~v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2           8 GVLVDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             SEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3445566888999999999999998776654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.30  E-value=0.019  Score=49.75  Aligned_cols=33  Identities=12%  Similarity=0.095  Sum_probs=27.3

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccCCCCcEEEEe
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~  115 (275)
                      .|.|=|+-|+||||+++.|...+...+.+.+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~   40 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP   40 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEEe
Confidence            578999999999999999999887665555543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.11  E-value=0.039  Score=45.93  Aligned_cols=72  Identities=14%  Similarity=0.029  Sum_probs=46.1

Q ss_pred             CceEEEEeCCCCCCccccc-cccc-cccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          193 DYIIYIIDVSGGDKIPRKG-GPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       193 ~~~vlllD~t~g~d~~~~~-~~~i-~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      |-.|.|+|+.......... ...+ ..+-++|+||+||++.  ...+...+.+...  ..+.+++|++++.+..++.+
T Consensus        17 DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~--~~~~~w~~~f~~~--~~~~i~isa~~~~~~~~~~~   90 (273)
T d1puja_          17 DIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA--AVTQQWKEHFENQ--GIRSLSINSVNGQGLNQIVP   90 (273)
T ss_dssp             SEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH--HHHHHHHHHHHTT--TCCEEECCTTTCTTGGGHHH
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCch--HHHHHHHHHHHhc--CCccceeecccCCCccccch
Confidence            7888999964433221111 1111 3567899999999987  4445555554433  46788999999988876654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.032  Score=48.67  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHH
Q 023913           80 RAFTVGIGGPVGTGKTALMLALC  102 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~  102 (275)
                      .+.++.|.|++|+||||++..++
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHH
Confidence            46799999999999999885443

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.77  E-value=0.019  Score=49.64  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=28.3

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEec
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN  116 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~  116 (275)
                      -.|.|=|.-||||||+++.|...+... ..+.+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            358899999999999999999988766 45655543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.77  E-value=0.015  Score=52.34  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             EEEEEcCCcchHHHHHHHHHhccC
Q 023913           83 TVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        83 iv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      =+.++||+|+|||-|.+.|++.+.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999999764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.63  E-value=0.11  Score=42.91  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=31.3

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      .+++|.|.=|.||||+--.|+-.+... .+|.++..|++.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            367889999999999988887766555 579888888763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.46  E-value=0.025  Score=46.93  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCcchHHHHH-HHHHhccC---CC-CcEEEEe
Q 023913           81 AFTVGIGGPVGTGKTALM-LALCKFLR---DK-YSLAAVT  115 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl-~~L~g~l~---~~-g~i~i~~  115 (275)
                      |+ +.|+|++||||||+| ..+..++.   .. .+|.+..
T Consensus        15 ~~-~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          15 GP-CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             SE-EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CC-EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            55 568899999999765 43333322   12 5787765

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.46  E-value=0.037  Score=41.62  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCcchHHH-HHHHHHhccCCCCcEEEEeccC
Q 023913           81 AFTVGIGGPVGTGKTA-LMLALCKFLRDKYSLAAVTNDI  118 (275)
Q Consensus        81 geiv~IiG~nGaGKTT-Ll~~L~g~l~~~g~i~i~~~d~  118 (275)
                      |.+..|+||-.||||| ||+.+-.+.....++.++....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~   40 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI   40 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcc
Confidence            6788999999999999 5555544422335666665443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.018  Score=48.90  Aligned_cols=34  Identities=21%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             ccccccCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        73 ~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.-....+|...+|.|+.|+|||||+..|+....
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3334457899999999999999999999987543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.025  Score=48.40  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~  119 (275)
                      ...+.++||+|+|||.|.+.|+..+.. --+.++..++.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~~-~~i~~d~s~~~   89 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALGI-ELLRFDMSEYM   89 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTC-EEEEEEGGGCS
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhccC-CeeEecccccc
Confidence            447899999999999999999998642 23444544443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.15  E-value=0.022  Score=49.01  Aligned_cols=40  Identities=25%  Similarity=0.185  Sum_probs=29.9

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      .-++.+.||+|+|||.|.+.|++.+... .-+.+.+.++..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~  163 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS  163 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST
T ss_pred             CceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh
Confidence            4456678999999999999999976433 346667666654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.021  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             cEEEEEcCCcchHHHHHHHHHh
Q 023913           82 FTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      .-+.|+|++|||||++++.++-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3489999999999999976654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.022  Score=45.55  Aligned_cols=26  Identities=31%  Similarity=0.444  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ...+.|.||+|+||||+.+.++..+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            44689999999999999999998653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.03  Score=44.66  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..-+.|+|++|.|||+++..|+..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            4567899999999999999998753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.027  Score=45.79  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+.|.||+|+||||+.++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3578899999999999999988654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.031  Score=46.82  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      ..-+.|+|++|+|||+++..|+..+
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHH
Confidence            4567899999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.46  E-value=0.035  Score=47.84  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      -.|.|=|+-||||||+++.|...+.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            3588999999999999999987654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.28  E-value=0.029  Score=40.60  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=25.5

Q ss_pred             ccCCCcEEEEEcCCcchHHHHH-HHHHhccCCC-CcEEEEe
Q 023913           77 FNERAFTVGIGGPVGTGKTALM-LALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        77 ~~~~geiv~IiG~nGaGKTTLl-~~L~g~l~~~-g~i~i~~  115 (275)
                      ..++|+.+.|..|.|||||+.. ..++...... ..+.+..
T Consensus         3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            4567999999999999999543 4444443333 3444443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.06  E-value=0.028  Score=47.16  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCcchHHHHH-HHHHhccC---CC-CcEEEEe
Q 023913           80 RAFTVGIGGPVGTGKTALM-LALCKFLR---DK-YSLAAVT  115 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl-~~L~g~l~---~~-g~i~i~~  115 (275)
                      .|+ +.|.|++||||||.| ..++.++.   .. .+|.+..
T Consensus        24 ~g~-~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt   63 (318)
T d1pjra1          24 EGP-LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (318)
T ss_dssp             SSC-EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             CCC-EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEe
Confidence            355 568899999999765 33333221   12 4676664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.092  Score=38.97  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCC-cEEEEeccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDI  118 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g-~i~i~~~d~  118 (275)
                      +|.+..|+||-.|||||-|-..+..+...| ++.++....
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~   40 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK   40 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence            588999999999999998877776666554 466555443

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.34  Score=38.11  Aligned_cols=55  Identities=4%  Similarity=-0.129  Sum_probs=35.4

Q ss_pred             ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhcc
Q 023913          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLSI  269 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~~  269 (275)
                      ++.-..+|+..+|..-......+.+...++.+.+...++..||.-...++++.+.
T Consensus       143 l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~  197 (207)
T d1t6na_         143 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK  197 (207)
T ss_dssp             CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred             ccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHH
Confidence            4556688998888432211223445555556656778888999877888877653

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.36  Score=37.95  Aligned_cols=53  Identities=9%  Similarity=0.223  Sum_probs=36.5

Q ss_pred             ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +.....+|+..+|..-.. .-.+.+...++.+.+...++..||.-...++++.+
T Consensus       144 ~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~  196 (206)
T d1veca_         144 VDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMN  196 (206)
T ss_dssp             CTTCCEEEEETHHHHTST-TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHH
T ss_pred             ccccceEEEecccccccc-chHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHH
Confidence            345568899998854332 23455666667777778888899987777777765

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.082  Score=44.31  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             cccCCCcEEEEEcCCcchHHHHHHHHHhcc-CCCCcEEEE
Q 023913           76 NFNERAFTVGIGGPVGTGKTALMLALCKFL-RDKYSLAAV  114 (275)
Q Consensus        76 ~~~~~geiv~IiG~nGaGKTTLl~~L~g~l-~~~g~i~i~  114 (275)
                      ....+|..++|.|+.|+|||||+..++... +.+..+.+.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~  102 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  102 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence            345689999999999999999988887643 333344443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.21  E-value=0.23  Score=38.22  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=19.0

Q ss_pred             EEEEcCCcchHHHHHHHHHhc-c-CCCCcEEEEe
Q 023913           84 VGIGGPVGTGKTALMLALCKF-L-RDKYSLAAVT  115 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~-l-~~~g~i~i~~  115 (275)
                      +.|.+|.|||||...-.++.. + ...+++.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            457799999999754444432 2 2235555543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.84  E-value=0.062  Score=43.06  Aligned_cols=23  Identities=43%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEcCCcchHHHHHHHHHhccC
Q 023913           84 VGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        84 v~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      +.|-||.|+|||-|+++++..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999998654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.65  E-value=0.083  Score=43.96  Aligned_cols=27  Identities=30%  Similarity=0.375  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+--++.|.||.++|||||++.|+.++
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            346689999999999999999999987

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.13  E-value=0.084  Score=42.20  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ++-.++.|.||+++|||++...|+..+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4567999999999999999999999874

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.90  E-value=0.13  Score=43.03  Aligned_cols=43  Identities=21%  Similarity=-0.007  Sum_probs=29.7

Q ss_pred             cccccccCCCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEE
Q 023913           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (275)
Q Consensus        72 ~~~~~~~~~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~  114 (275)
                      .+.-....+|..++|.|+.|+|||+|+..++-....+..+.+.
T Consensus        58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~  100 (276)
T d1fx0a3          58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY  100 (276)
T ss_dssp             TTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred             EeccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence            3333445689999999999999999998765543334334333

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.57  E-value=0.11  Score=38.13  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHh-ccCCC--CcEEEEecc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCK-FLRDK--YSLAAVTND  117 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g-~l~~~--g~i~i~~~d  117 (275)
                      ++|..+.+.|-+|||||||-+.|.- +++-.  ..+.+...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            4689999999999999999999965 44434  346665433

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.50  E-value=0.37  Score=37.88  Aligned_cols=52  Identities=6%  Similarity=0.054  Sum_probs=34.5

Q ss_pred             ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHh
Q 023913          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTL  267 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~  267 (275)
                      +..-..+|+..+|..-.. ...+.+.+.++.+.+...++..||.-...+.++.
T Consensus       143 ~~~l~~lViDEad~l~~~-~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~  194 (208)
T d1hv8a1         143 LKNVKYFILDEADEMLNM-GFIKDVEKILNACNKDKRILLFSATMPREILNLA  194 (208)
T ss_dssp             TTSCCEEEEETHHHHHTT-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHH
T ss_pred             cccCcEEEEEChHHhhcC-CChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHH
Confidence            344568899998854221 2345566667777778889999987665555554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.03  E-value=0.11  Score=44.29  Aligned_cols=26  Identities=35%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .-.+.++||+|+|||.|.+.|+..+.
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHhc
Confidence            33678999999999999999999764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.18  Score=41.25  Aligned_cols=39  Identities=23%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      -.++.+.|.=|+||||+--.|+-.+... .++.++..|+.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5678899999999999999888887665 68888888864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.90  E-value=0.1  Score=45.36  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=26.4

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEeccCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF  119 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~~d~~  119 (275)
                      .-+.++||.|+|||-|.+.|+.++.. .-+.++...+.
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~-~~ir~D~s~~~  105 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDI-PIAISDATSLT  105 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGGGCC
T ss_pred             cceeeeCCCCccHHHHHHHHHhhccc-ceeehhhhhcc
Confidence            34888899999999999999987532 23444444443

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.57  E-value=0.17  Score=37.82  Aligned_cols=38  Identities=13%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEecc
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d  117 (275)
                      .|.+-.|+||-.|||||-|-..+..+... -++.++...
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~   44 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE   44 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEec
Confidence            59999999999999999877666655544 456665543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.52  E-value=0.17  Score=39.84  Aligned_cols=40  Identities=33%  Similarity=0.381  Sum_probs=32.3

Q ss_pred             CcEEEEE-cCCcchHHHHHHHHHhccCCC-CcEEEEeccCCC
Q 023913           81 AFTVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        81 geiv~Ii-G~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~~  120 (275)
                      |.+++|. +.-|+||||+--.|+..+... .++.++..|+..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~   43 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            5678888 788999999999999887755 578888877643

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.12  Score=40.11  Aligned_cols=34  Identities=24%  Similarity=0.165  Sum_probs=28.3

Q ss_pred             cEEEEEcCC-cchHHHHHHHHHhccCCC-CcEEEEe
Q 023913           82 FTVGIGGPV-GTGKTALMLALCKFLRDK-YSLAAVT  115 (275)
Q Consensus        82 eiv~IiG~n-GaGKTTLl~~L~g~l~~~-g~i~i~~  115 (275)
                      ..+.|+|-. |+||||+--.|+..+... .++.++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            467899997 999999999999988776 5777764

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.21  E-value=0.18  Score=39.50  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=36.9

Q ss_pred             ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +..-..+|+..+|..-.. .-.+.+...++.+.+...++..||.-.+.+.++.+
T Consensus       145 ~~~l~~lViDEad~ll~~-~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~  197 (209)
T d1q0ua_         145 VHTAHILVVDEADLMLDM-GFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK  197 (209)
T ss_dssp             GGGCCEEEECSHHHHHHT-TCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred             cccceEEEEeeccccccc-ccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHH
Confidence            355677888888865432 22455666677777888899999976677777765

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.85  E-value=0.1  Score=42.95  Aligned_cols=38  Identities=11%  Similarity=0.066  Sum_probs=25.0

Q ss_pred             cCCCcEEEEEcCCcchHHH-HH-HHHHhccCCCCcEEEEe
Q 023913           78 NERAFTVGIGGPVGTGKTA-LM-LALCKFLRDKYSLAAVT  115 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTT-Ll-~~L~g~l~~~g~i~i~~  115 (275)
                      ..+|+.+.|.+|.|||||+ ++ .++....+...++.+..
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~   45 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA   45 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            4578899999999999996 33 44433333334555553

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.82  E-value=0.1  Score=45.78  Aligned_cols=39  Identities=21%  Similarity=0.173  Sum_probs=24.2

Q ss_pred             cEEEEEcCCcchHHHHHHHHHhc-----cCCC-CcEEEEeccCCC
Q 023913           82 FTVGIGGPVGTGKTALMLALCKF-----LRDK-YSLAAVTNDIFT  120 (275)
Q Consensus        82 eiv~IiG~nGaGKTTLl~~L~g~-----l~~~-g~i~i~~~d~~~  120 (275)
                      .-+.|+|++|+|||+++.-|+..     .++. ....+...+++.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~   88 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS   88 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh
Confidence            33688899999999999766642     2233 233455555543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.22  Score=40.58  Aligned_cols=39  Identities=26%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC-CcEEEEeccCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~-g~i~i~~~d~~  119 (275)
                      ..++.+.|.=|+||||+--.|+-.+... .++.++..|+.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5677788999999999988888777655 57888888875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.67  E-value=0.2  Score=39.43  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+.-+.|.||+|+||||+.+.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999999998653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.31  E-value=0.16  Score=36.87  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEEe
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~~  115 (275)
                      -.+..|.+|.|||||+++-.++-  ....++.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~--~~~~~vli~~   40 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA--AQGYKVLVLN   40 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH--TTTCCEEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH--HcCCcEEEEc
Confidence            46678899999999998744432  2224555443

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=1.8  Score=34.24  Aligned_cols=53  Identities=8%  Similarity=-0.025  Sum_probs=36.9

Q ss_pred             ccccCEEEEecCCCCccchhhHHHHHHHHHhcCCCCCEEEEEecCCcCHHHHhc
Q 023913          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVGWVIGIIFTLS  268 (275)
Q Consensus       215 i~~adiivlNK~Dl~~~~~~~~~~~~~~i~~~~~~~~ii~~S~~~~~g~~~l~~  268 (275)
                      +.....+|+..+|..-.. .-.+.+...++.+.+...++..||.-...++++.+
T Consensus       157 ~~~l~~lVlDEaD~ll~~-~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~  209 (222)
T d2j0sa1         157 TRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN  209 (222)
T ss_dssp             CTTCCEEEEETHHHHTST-TTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGG
T ss_pred             cccceeeeecchhHhhhc-CcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHH
Confidence            455668899998865332 23455666667777778899999977777777665

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=85.01  E-value=0.43  Score=36.76  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAV  114 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i~  114 (275)
                      ++.+++|+|-|  ||||.-.+|..++...|.....
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~g~~~~~   33 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQCGNTLYT   33 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTTSCEEEC
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhCCCCEEE
Confidence            45799999999  7999999999998877654443

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.92  E-value=0.18  Score=42.33  Aligned_cols=29  Identities=24%  Similarity=0.034  Sum_probs=23.9

Q ss_pred             ccccCCCcEEEEEcCCcchHHHHHHHHHh
Q 023913           75 RNFNERAFTVGIGGPVGTGKTALMLALCK  103 (275)
Q Consensus        75 ~~~~~~geiv~IiG~nGaGKTTLl~~L~g  103 (275)
                      -....+|..++|.|+.|+|||||+..++.
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            33457799999999999999999876654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.27  Score=41.63  Aligned_cols=20  Identities=40%  Similarity=0.381  Sum_probs=17.6

Q ss_pred             CCCcEEEEEcCCcchHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALM   98 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl   98 (275)
                      .+|++..+.|-+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            45889999999999999964

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.24  E-value=0.28  Score=41.70  Aligned_cols=20  Identities=35%  Similarity=0.303  Sum_probs=17.5

Q ss_pred             CCCcEEEEEcCCcchHHHHH
Q 023913           79 ERAFTVGIGGPVGTGKTALM   98 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl   98 (275)
                      ..|++..+.|-+|+|||||-
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            45889999999999999963

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.67  E-value=0.22  Score=39.79  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC-CCCcEEEEe
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVT  115 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~-~~g~i~i~~  115 (275)
                      .+|+-+.|+.|.|+|||+..-..+-.+. +..++.++.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             HCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            3577889999999999986544443322 234555543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.32  E-value=0.65  Score=37.61  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCcchHHHHHHHHHhccCCC
Q 023913           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (275)
Q Consensus        81 geiv~IiG~nGaGKTTLl~~L~g~l~~~  108 (275)
                      ..-|.|.|+.|+|||++-+.|-..-...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            4447888999999999999998764444

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.44  Score=36.73  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCcchHHHHHHHHHhccCCCCcEEE
Q 023913           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAA  113 (275)
Q Consensus        80 ~geiv~IiG~nGaGKTTLl~~L~g~l~~~g~i~i  113 (275)
                      +.++++|+|-|  ||||.-.+|..+++..|....
T Consensus        10 ~~~vI~VTGT~--GKTTt~~~l~~iL~~~g~~~~   41 (204)
T d2jfga3          10 QAPIVAITGSN--GKSTVTTLVGEMAKAAGVNVG   41 (204)
T ss_dssp             CSCEEEEECSS--SHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCC--CHHHHHHHHHHHHHhcCCCcc
Confidence            47899999998  799999999998876654433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=81.77  E-value=0.38  Score=45.13  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhcc
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l  105 (275)
                      .+...+.|.|.+|||||+-.|.|+..+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999888765

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.62  E-value=0.39  Score=45.30  Aligned_cols=28  Identities=25%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        79 ~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      .+...+.|.|.+|||||+-.|.++..+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999988653

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.11  E-value=0.41  Score=45.07  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=25.1

Q ss_pred             cCCCcEEEEEcCCcchHHHHHHHHHhccC
Q 023913           78 NERAFTVGIGGPVGTGKTALMLALCKFLR  106 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl~~L~g~l~  106 (275)
                      ..+...+.|.|.+|||||+-.|.++..+.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999988763

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.06  E-value=0.4  Score=40.73  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.3

Q ss_pred             cCCCcEEEEEcCCcchHHHHH
Q 023913           78 NERAFTVGIGGPVGTGKTALM   98 (275)
Q Consensus        78 ~~~geiv~IiG~nGaGKTTLl   98 (275)
                      ...|.+..+.|-+|+|||||-
T Consensus        11 ~~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          11 GKQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CTTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCCEEEEEccCCCCcccce
Confidence            345889999999999999985