Citrus Sinensis ID: 023919

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvswnsvplEITYQVLGWISFVAWSVSFYPQVILNFRrksvvglnFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKygrdqmipvaanDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFrrkstdgfsiGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Flexible Loop (DISEMBL)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISsklskdggvepllkssdhpesenv
Low Complexity Region (SEG)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTllslvsvvfdllfICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Disordered region (IsUnstruct)
***WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVI*************************
Disordered Region (DISOPRED)
*****SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY********************************
Disordered Region (DISEMBL)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPL************
Disordered Region (DISPRO)
***WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAK*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
P57758	270	Cystinosin homolog OS=Ara	yes	no	0.974	0.992	0.691	1e-110
Q54WT7	284	Cystinosin homolog OS=Dic	yes	no	0.836	0.809	0.472	9e-59
A7MB63	367	Cystinosin OS=Bos taurus	yes	no	0.869	0.651	0.456	7e-55
O60931	367	Cystinosin OS=Homo sapien	yes	no	0.883	0.662	0.461	9e-55
P57757	367	Cystinosin OS=Mus musculu	yes	no	0.869	0.651	0.456	3e-52
Q9VCR7	397	Cystinosin homolog OS=Dro	yes	no	0.927	0.642	0.425	1e-51
Q09500	404	Cystinosin homolog OS=Cae	yes	no	0.861	0.586	0.448	2e-49
A8WN56	403	Cystinosin homolog OS=Cae	N/A	no	0.963	0.657	0.402	6e-49
P17261	260	Cystine transporter OS=Sa	yes	no	0.84	0.888	0.306	5e-18
Q95XZ6	311	Lysosomal amino acid tran	no	no	0.843	0.745	0.221	0.0002

>sp|P57758|CTNS_ARATH Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 226/269 (84%), Gaps = 1/269 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+ QHY
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDH 269
           VLYP KK   S +  ++   EPL+ SS  
Sbjct: 241 VLYPEKKVSKSPETGEESN-EPLIDSSHE 268

Thought to transport cystine out of lysosomes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54WT7|CTNS_DICDI Cystinosin homolog OS=Dictyostelium discoideum GN=ctns PE=3 SV=1

 Score =  227 bits (578), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/233 (47%), Positives = 162/233 (69%), Gaps = 3/233 (1%)

Query: 17  GWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQY 76
           GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F   V+ +Y
Sbjct: 12  GWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYFDKLVKNEY 71

Query: 77  FQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAA 136
           + KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I +++W++  
Sbjct: 72  YDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIATLIWVSLI 129

Query: 137 VCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 195
           V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N+LLDF GG
Sbjct: 130 VMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHNVLLDFSGG 189

Query: 196 CTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA 248
             +  QM +   D  +W  F G+  K  LSL S+ FD+LFI QHY+LY   K+
Sbjct: 190 VLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPKS 242

Thought to transport cystine out of lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|A7MB63|CTNS_BOVIN Cystinosin OS=Bos taurus GN=CTNS PE=2 SV=1

 Score =  214 bits (544), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 165/241 (68%), Gaps = 2/241 (0%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+
Sbjct: 123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
             ++++Q+  KY  + + PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ +
Sbjct: 183 VPSIKEQFLLKY-PNGVNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFL 241

Query: 129 SVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
            + WL   +   +A +   +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN
Sbjct: 242 VLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGN 301

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKK 247
           +LLDF GG  +  QM +QS + + W   +G+  K  L + S++FD++F  QH+ LY  K 
Sbjct: 302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKKP 361

Query: 248 A 248
            
Sbjct: 362 G 362

Thought to transport cystine out of lysosomes.

Bos taurus (taxid: 9913)

>sp|O60931|CTNS_HUMAN Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2

 Score =  213 bits (543), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 164/245 (66%), Gaps = 2/245 (0%)

Query: 5   NSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64
            S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+
Sbjct: 119 RSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNI 178

Query: 65  VLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKIS 124
            L +   +++Q+  KY  + + PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  +
Sbjct: 179 GLLWVPYIKEQFLLKY-PNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPA 237

Query: 125 MAIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 183
           +  + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+
Sbjct: 238 IGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGW 297

Query: 184 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 243
           SIGN+LLDF GG  +  QM +QS + + W   +G+  K  L + S+VFD++F  QH+ LY
Sbjct: 298 SIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357

Query: 244 PAKKA 248
             +  
Sbjct: 358 RKRPG 362

Thought to transport cystine out of lysosomes.

Homo sapiens (taxid: 9606)

>sp|P57757|CTNS_MOUSE Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 2/241 (0%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L +
Sbjct: 123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
              +Q+++  KY  + + PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  +
Sbjct: 183 VPYIQEEFLLKY-PNGVNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFL 241

Query: 129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
            + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct: 242 VLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKK 247
           +LLDF GG  +  QM +QS + + W   +G+  K  L + ++ FD++F  QH+ LY  K 
Sbjct: 302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKKP 361

Query: 248 A 248
            
Sbjct: 362 G 362

Thought to transport cystine out of lysosomes.

Mus musculus (taxid: 10090)

>sp|Q9VCR7|CTNS_DROME Cystinosin homolog OS=Drosophila melanogaster GN=CG17119 PE=1 SV=2

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 160/261 (61%), Gaps = 6/261 (2%)

Query: 15  VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQ 74
           + GW+ FVAWSVSFYPQ+  N+RRKSV GLNFDF+ LN+   + Y ++N  L+F   +Q 
Sbjct: 134 IFGWVYFVAWSVSFYPQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGLYFIEDLQN 193

Query: 75  QYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLA 134
           +Y  +Y    + PV  NDV FS+HA+  T IT+ Q   Y+R  Q+VS I+  I+++   A
Sbjct: 194 EYEVRYPLG-VNPVMLNDVVFSLHAMFATCITILQCFFYQRAQQRVSFIAYGILAI--FA 250

Query: 135 AAVCFFVALPNHS---WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD 191
             V     L   S   WL  + + + +++ +T+IKY+PQA+MN+RRKST G+SIGNILLD
Sbjct: 251 VVVVVSAGLAGGSVIHWLDFLYYCSYVKLTITIIKYVPQALMNYRRKSTSGWSIGNILLD 310

Query: 192 FLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKAVIS 251
           F GG  +  QMI+ + + + WV+ +G+  K  L L SV+FD+ F+ QHYV Y   +   S
Sbjct: 311 FTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESSS 370

Query: 252 SKLSKDGGVEPLLKSSDHPES 272
           S L+    V+     S  P  
Sbjct: 371 SDLTTVTDVQNRTNESPPPSE 391

Thought to transport cystine out of lysosomes.

Drosophila melanogaster (taxid: 7227)

>sp|Q09500|CTNS_CAEEL Cystinosin homolog OS=Caenorhabditis elegans GN=ctns-1 PE=3 SV=2

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/241 (44%), Positives = 151/241 (62%), Gaps = 4/241 (1%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           L I  Q++GW  F AWS+SFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y I+N+++++
Sbjct: 125 LAILIQIVGWTYFFAWSISFYPQMYLNFKRKSVVGLNFDFLSLNLVGFCAYAIFNLLMYY 184

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
           +S V+ +Y     R    PV  NDV F++HA L   IT+ Q   YER  Q VS   +A++
Sbjct: 185 NSHVKNEYNIVNPRSPP-PVLLNDVVFAVHAFLACFITILQCLFYERDNQSVSSKCIALM 243

Query: 129 SVVWLAAAVCFFVA--LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIG 186
            +V ++   C   A  L     L  +   + I++ +T  KY PQA  N+ RKST G+SIG
Sbjct: 244 -IVLISFGFCSAAATVLRKIQLLSFVTSLSYIKMAVTCCKYFPQAYFNYTRKSTVGWSIG 302

Query: 187 NILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAK 246
           NI+LDF GG  +  QMI+Q+++ N W  FY N  K  L  VS+ FD++F+ QHYVLYP  
Sbjct: 303 NIMLDFTGGTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYPNA 362

Query: 247 K 247
           +
Sbjct: 363 E 363

Thought to transport cystine out of lysosomes (By similarity). May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|A8WN56|CTNS_CAEBR Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/268 (40%), Positives = 161/268 (60%), Gaps = 3/268 (1%)

Query: 9   LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
           L I  Q++GW  F AWSVSFYPQ+ LNF+RKSVVGLNFDF+ LNL    +Y ++N+++++
Sbjct: 124 LAILIQIVGWTYFAAWSVSFYPQMYLNFKRKSVVGLNFDFLSLNLVGFGAYAMFNLLMYY 183

Query: 69  SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVS-KISMAI 127
           +S V+  Y  +  R    PV  NDV F++HA L   +T+ Q   YER  Q++S K  + I
Sbjct: 184 NSHVKNIYSMENPRSPP-PVLLNDVVFAVHAFLACFVTILQCIFYERDQQRISTKCIILI 242

Query: 128 VSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
           + +V           L   + L  +   + I++ +T  KY PQA  N++RKST G+SIGN
Sbjct: 243 IGLVSFGFVSVVVTVLNKITILDFVVSLSYIKMAVTCCKYFPQAYFNYQRKSTVGWSIGN 302

Query: 188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKK 247
           ILLDF GG  +  QM++Q+I+ N W  FY N  K  L  VS+ FD++F+ QHY LYP  +
Sbjct: 303 ILLDFTGGSLDILQMVLQAINVNDWSAFYANPVKFGLGFVSIFFDIIFMIQHYALYPDAE 362

Query: 248 AVISSKLSKDG-GVEPLLKSSDHPESEN 274
              +     D    + +++ ++H  ++N
Sbjct: 363 VPHNEYHGVDNPDPDSIVRDAEHGAADN 390

Thought to transport cystine out of lysosomes. May play a role in the degradation of engulfed apoptotic cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|P17261|ERS1_YEAST Cystine transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERS1 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 128/261 (49%), Gaps = 30/261 (11%)

Query: 14  QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQ 73
            +LG +   +WS+S YP +I N+R KS   ++ DFV+LN T   SY++ ++ L       
Sbjct: 6   DILGIVYVTSWSISMYPPIITNWRHKSASAISMDFVMLN-TAGYSYLVISIFLQLYCWKM 64

Query: 74  QQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYER-------GVQKVSK---- 122
                  GR ++      D  + +H  L+ ++ L Q+    R       G +K++     
Sbjct: 65  TGDESDLGRPKLTQF---DFWYCLHGCLMNVVLLTQVVAGARIWRFPGKGHRKMNPWYLR 121

Query: 123 ---ISMAIVSVVWLAAAVCFFVALPNHSW-----LWLINFFNAIQVIMTLIKYIPQAIMN 174
               S+AI S++     V F  +   + W     L   N    +++ M+LIKYIPQ   N
Sbjct: 122 ILLASLAIFSLL----TVQFMYSNYWYDWHNSRTLAYCNNLFLLKISMSLIKYIPQVTHN 177

Query: 175 FRRKSTDGFSIGNILLDFLGGCTNYSQMIVQ-SIDQN-SWVNFYGNIGKTLLSLVSVVFD 232
             RKS D F I  + LD  GG  +  Q+I Q S DQ  S   F  N GK  LS+V+++F+
Sbjct: 178 STRKSMDCFPIQGVFLDVTGGIASLLQLIWQLSNDQGFSLDTFVTNFGKVGLSMVTLIFN 237

Query: 233 LLFICQHYVLYPAKKAVISSK 253
            +FI Q +V Y ++   ++S+
Sbjct: 238 FIFIMQWFV-YRSRGHDLASE 257

Transport cystine out of vacuoles/endodomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q95XZ6|LAAT1_CAEEL Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 61/293 (20%)

Query: 15  VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQ 74
           ++G IS   W +  +PQ+  N++ K   GL+  F+   L   +  M+  ++        Q
Sbjct: 44  IIGLISLALWLIPLFPQLWQNYKTKKCEGLSLAFLFFWLVGDTCNMLGAIL------TNQ 97

Query: 75  QYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLA 134
           Q  QK             V + +  ++L     + + IY R     ++ +  +V V+ LA
Sbjct: 98  QPIQK----------IIGVYYIIQDLVLWTQYGYYLKIYNRPTTSSARSNTIVVPVLALA 147

Query: 135 AAVCFFV---ALP---------------NHS-----------WLWLINFFNAIQVI---M 162
           +   FFV   ALP               NH            W    ++ + +  I   M
Sbjct: 148 SVGSFFVFESALPPVGDHRVKRSFLESLNHQEGLPLEGILKMWPIFTSYTDMLGYIIGSM 207

Query: 163 TLIKY----IPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGN 218
             + Y    IPQ I N+R  S +G S   + + ++    N++  I   +   SW+    +
Sbjct: 208 AAVCYFGGRIPQIIKNYRHSSCEGLS---LTMFYIIVAANFTYGISVLLATTSWLYLLRH 264

Query: 219 IGKTLLSLVSVVFDLLFICQHYVLYPAKKAVISSKLSKDGGVEPLLKSSDHPE 271
           +     SL    FD + I Q+Y+  P       + L++D     LL S D  +
Sbjct: 265 LPWLAGSLGCCCFDAVIISQYYLYRP------KTPLAEDTERAGLLNSQDDSD 311

Lysosomal lysine/arginine transporter that specifically mediates the export of lysine and arginine from lysosomes.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224141271	274	predicted protein [Populus trichocarpa]	0.992	0.996	0.760	1e-120
449450036	274	PREDICTED: cystinosin homolog [Cucumis s	0.996	1.0	0.752	1e-119
356558785	277	PREDICTED: cystinosin homolog [Glycine m	0.989	0.981	0.735	1e-116
388517027	277	unknown [Medicago truncatula]	1.0	0.992	0.740	1e-116
388506624	277	unknown [Lotus japonicus]	1.0	0.992	0.711	1e-113
359488646	255	PREDICTED: cystinosin homolog [Vitis vin	0.901	0.972	0.790	1e-113
297805606	270	PQ-loop repeat family protein [Arabidops	0.974	0.992	0.702	1e-109
21553944	270	unknown [Arabidopsis thaliana]	0.974	0.992	0.695	1e-109
356571457	277	PREDICTED: cystinosin homolog isoform 2	0.989	0.981	0.703	1e-108
15237468	270	cystinosin [Arabidopsis thaliana] gi|131	0.974	0.992	0.691	1e-108

>gi|224141271|ref|XP_002323998.1| predicted protein [Populus trichocarpa] gi|118485298|gb|ABK94508.1| unknown [Populus trichocarpa] gi|222867000|gb|EEF04131.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/276 (76%), Positives = 241/276 (87%), Gaps = 3/276 (1%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEITY+  GWI+F +WS+SFYPQVI+NFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSIPLEITYETFGWIAFFSWSISFYPQVIMNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IY+RG QKV
Sbjct: 61  IYNASLYFSSAIQHQYFEKYGHGEMIPVAANDVAFSIHAVLLTAITLFQIVIYDRGNQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+A V VVWL AAVCFF+ALP+HSWLWLI+ FN+IQV MT+IKYIPQ IMNF RKST
Sbjct: 121 SKISIATVCVVWLVAAVCFFIALPSHSWLWLISIFNSIQVFMTVIKYIPQVIMNFMRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DGFSIGNILLD LGG TNY+QM VQSIDQNSWVNFYGNIGKTLLSLVS+ FDL+F+CQHY
Sbjct: 181 DGFSIGNILLDCLGGVTNYAQMAVQSIDQNSWVNFYGNIGKTLLSLVSIFFDLVFMCQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDHPES-ENV 275
           +LYP  KAV   KL+K+ G EPL++ S+ P + ENV
Sbjct: 241 ILYPENKAV-PPKLNKE-GTEPLIRFSEEPAAPENV 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450036|ref|XP_004142770.1| PREDICTED: cystinosin homolog [Cucumis sativus] gi|449483821|ref|XP_004156702.1| PREDICTED: cystinosin homolog [Cucumis sativus]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/275 (75%), Positives = 237/275 (86%), Gaps = 1/275 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEITYQVLGW +FV+WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHS+Y+
Sbjct: 1   MASWNSIPLEITYQVLGWFAFVSWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSTYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS VQ+QYF KYG DQMIPVAA+DVAFS+HAVLLT ITLFQ+ IY+RG Q V
Sbjct: 61  IYNASLYFSSAVQKQYFDKYGYDQMIPVAASDVAFSIHAVLLTAITLFQVVIYDRGTQIV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV VVW+ AA+CFF+ L +HSWLWLI+ FN+IQV MT IKYIPQAIMNF RKST
Sbjct: 121 SKISLTIVIVVWIFAAICFFIGLSSHSWLWLISIFNSIQVFMTAIKYIPQAIMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DGFSIGNILLDFLGG  NY+QM VQSIDQNSWVNFYGNIGKTLLSL+S+ FDLLF+ QHY
Sbjct: 181 DGFSIGNILLDFLGGLANYAQMAVQSIDQNSWVNFYGNIGKTLLSLISIFFDLLFMLQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDHPESENV 275
           VLYP K+ ++S K + D   E L+   D P+SE+V
Sbjct: 241 VLYPGKRPIVSQK-ADDKTREALIAPPDRPQSEDV 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558785|ref|XP_003547683.1| PREDICTED: cystinosin homolog [Glycine max]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 235/280 (83%), Gaps = 8/280 (2%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS PL++TY+ LGW +FV+WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSFPLQVTYEALGWFAFVSWSISFYPQVILNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q+QYF+KYG  +MIPVAANDVAFS+HAVLLT ITLFQIAIYERG QKV
Sbjct: 61  IYNASLYFSSAIQKQYFEKYGYGEMIPVAANDVAFSIHAVLLTAITLFQIAIYERGSQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SK+S+ IVSV WL AAVCFF+ALPN+SWLWL++ FN IQV+MT IKYIPQA+MNF RKST
Sbjct: 121 SKVSIGIVSVAWLVAAVCFFIALPNNSWLWLLSVFNTIQVVMTTIKYIPQAVMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DGFSIGNILLDF GG  NY QM+VQSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QHY
Sbjct: 181 DGFSIGNILLDFSGGIANYGQMVVQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHY 240

Query: 241 VLYPAKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 275
           VLY  KK   SSKL      +D   E L++ SD    ENV
Sbjct: 241 VLYRGKK---SSKLEITTEQEDQIREHLVRHSDQSSPENV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517027|gb|AFK46575.1| unknown [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/277 (74%), Positives = 234/277 (84%), Gaps = 2/277 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNSV LE+TY+VLGW +F+ WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY+
Sbjct: 1   MASWNSVSLEVTYEVLGWFAFIVWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS +Q+QYFQKYG DQMIPVA NDVAFS+HAVLLT I LFQIAIYERG QK+
Sbjct: 61  IYNSSLYFSSAIQKQYFQKYGYDQMIPVAKNDVAFSIHAVLLTAIALFQIAIYERGSQKL 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKI + IVS+VWL AAVCFFVAL NHSWLWL+N FN+IQV+MT IKYIPQ  MNF RKST
Sbjct: 121 SKICIGIVSIVWLTAAVCFFVALSNHSWLWLLNVFNSIQVLMTTIKYIPQVSMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DG+SIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QHY
Sbjct: 181 DGWSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHY 240

Query: 241 VLYPAKKA--VISSKLSKDGGVEPLLKSSDHPESENV 275
           VLYP KK+  ++++   +D   E L + SD   SENV
Sbjct: 241 VLYPDKKSSKLVTTTEDEDQIREHLNRPSDESPSENV 277

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506624|gb|AFK41378.1| unknown [Lotus japonicus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/277 (71%), Positives = 234/277 (84%), Gaps = 2/277 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS PL +TY++LGW +F++WS+SFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSY+
Sbjct: 1   MASWNSNPLHVTYELLGWFAFISWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           I+N  L+FSS +Q+QYF KYG  +MIPVAANDVAFS+HAVLLT ITLFQI IYERG QKV
Sbjct: 61  IFNASLYFSSAIQKQYFDKYGYQEMIPVAANDVAFSIHAVLLTAITLFQIVIYERGSQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV V WL AA+CFF+AL +HSWLWL++ FN+IQV MT++KYIPQ IMNF RKST
Sbjct: 121 SKISIGIVFVAWLTAAICFFIALSDHSWLWLLSIFNSIQVAMTIVKYIPQVIMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DGFSIGNILLDF GG  NY QM+VQS+DQ+SWVNFYGNIGK LLSLVSV FD++FI QHY
Sbjct: 181 DGFSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHY 240

Query: 241 VLYPAKKA--VISSKLSKDGGVEPLLKSSDHPESENV 275
           VLYPAK++  ++++   +D   E L++ SD    ENV
Sbjct: 241 VLYPAKRSSKLVTTTDDEDQIREHLVRPSDVSPPENV 277

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488646|ref|XP_002268255.2| PREDICTED: cystinosin homolog [Vitis vinifera] gi|296081320|emb|CBI17702.3| unnamed protein product [Vitis vinifera]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/248 (79%), Positives = 217/248 (87%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS  LEI YQV GW +FV+WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSTSLEIVYQVFGWTAFVSWSISFYPQVILNFRRKSVVGLNFDFVVLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN VL+FSS VQ+QY +KYG  QMIPVAANDVAFS+HAV+LT  TLFQIAIYERG QKV
Sbjct: 61  IYNAVLYFSSAVQRQYREKYGIGQMIPVAANDVAFSIHAVILTAFTLFQIAIYERGTQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKIS+ IV   WL+AAVC  +ALPNHSWLWLI+ FN IQV+MT+IKY+PQA MNFRRKST
Sbjct: 121 SKISIGIVCAAWLSAAVCVIIALPNHSWLWLISVFNTIQVVMTVIKYVPQAFMNFRRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           DGFSIGNILLD  GG  NY+QM VQSIDQ+SWVNFYGNIGK LLSLVSV FDL+FICQHY
Sbjct: 181 DGFSIGNILLDLCGGVANYAQMTVQSIDQDSWVNFYGNIGKLLLSLVSVFFDLIFICQHY 240

Query: 241 VLYPAKKA 248
           +LYP KKA
Sbjct: 241 LLYPGKKA 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805606|ref|XP_002870687.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297316523|gb|EFH46946.1| PQ-loop repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/269 (70%), Positives = 227/269 (84%), Gaps = 1/269 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRRKSVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRKSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTALTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWAFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGNIGKTLLSL+S+ FD+LF+ QHY
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNIGKTLLSLISIFFDILFMFQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDH 269
           VLYP KKA  S +  ++   EPL+ SS  
Sbjct: 241 VLYPEKKASKSLETGEESN-EPLIDSSHE 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553944|gb|AAM63025.1| unknown [Arabidopsis thaliana]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/269 (69%), Positives = 228/269 (84%), Gaps = 1/269 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS++AV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSINAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+CQHY
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMCQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDH 269
           VLYP KK   S + S++   EPL+ SS  
Sbjct: 241 VLYPEKKVSKSPETSEESN-EPLIDSSHE 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571457|ref|XP_003553893.1| PREDICTED: cystinosin homolog isoform 2 [Glycine max]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/280 (70%), Positives = 227/280 (81%), Gaps = 8/280 (2%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNSVPL ++Y+VLGW++F  WS+SFYPQVILNFRRKSVVGLNFDFV+LNLTKHSSY+
Sbjct: 1   MASWNSVPLHVSYEVLGWVAFACWSISFYPQVILNFRRKSVVGLNFDFVMLNLTKHSSYL 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYN  L+FSS VQ+QY  KYG+++MIPVAANDVAFS HAVLLT I+LFQIAIY+RG QK+
Sbjct: 61  IYNASLYFSSAVQKQYRDKYGQNEMIPVAANDVAFSAHAVLLTAISLFQIAIYDRGSQKI 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           SKI+  I+ V W  AA CFFVAL NH WLWLI+ F+ IQV MT+IKYIPQA+MNF RKST
Sbjct: 121 SKIAYGILLVTWTTAATCFFVALHNHHWLWLISIFSGIQVCMTIIKYIPQAVMNFLRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
           +GFSI NILLDF GG  NY QM++QSIDQ+SWVNFYGNIGK LLSLVSV FD++FI QHY
Sbjct: 181 NGFSICNILLDFSGGIANYGQMVLQSIDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHY 240

Query: 241 VLYPAKKAVISSKLS-----KDGGVEPLLKSSDHPESENV 275
           VLY  KK   SSKL      +D   E L+K SD    ENV
Sbjct: 241 VLYRGKK---SSKLEITTEQEDQIREHLVKPSDQSPPENV 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237468|ref|NP_198883.1| cystinosin [Arabidopsis thaliana] gi|13124057|sp|P57758.1|CTNS_ARATH RecName: Full=Cystinosin homolog gi|9758095|dbj|BAB08539.1| unnamed protein product [Arabidopsis thaliana] gi|15529266|gb|AAK97727.1| AT5g40670/MNF13_190 [Arabidopsis thaliana] gi|16974419|gb|AAL31135.1| AT5g40670/MNF13_190 [Arabidopsis thaliana] gi|332007197|gb|AED94580.1| cystinosin [Arabidopsis thaliana]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 226/269 (84%), Gaps = 1/269 (0%)

Query: 1   MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
           M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct: 1   MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query: 61  IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
           IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct: 61  IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query: 121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
           S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct: 121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query: 181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHY 240
            G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKTLLSL+S+ FD+LF+ QHY
Sbjct: 181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

Query: 241 VLYPAKKAVISSKLSKDGGVEPLLKSSDH 269
           VLYP KK   S +  ++   EPL+ SS  
Sbjct: 241 VLYPEKKVSKSPETGEESN-EPLIDSSHE 268

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2168843	270	AT5G40670 "AT5G40670" [Arabido	0.974	0.992	0.659	1.1e-96
ZFIN|ZDB-GENE-050522-352	384	ctns "cystinosis, nephropathic	0.850	0.609	0.478	7.8e-55
DICTYBASE|DDB_G0279445	284	ctns "cystinosin" [Dictyosteli	0.865	0.838	0.431	9.9e-55
UNIPROTKB|E1BXK0	377	CTNS "Uncharacterized protein"	0.865	0.631	0.441	1.2e-51
UNIPROTKB|A7MB63	367	CTNS "Cystinosin" [Bos taurus	0.861	0.645	0.439	8.3e-51
UNIPROTKB|O60931	367	CTNS "Cystinosin" [Homo sapien	0.861	0.645	0.447	1.3e-50
UNIPROTKB|E2R8H4	388	CTNS "Uncharacterized protein"	0.901	0.639	0.424	2.2e-50
UNIPROTKB|F1RLI8	373	CTNS "Uncharacterized protein"	0.890	0.656	0.436	2.8e-50
RGD|1308466	367	Ctns "cystinosin, lysosomal cy	0.861	0.645	0.443	3.2e-49
MGI|MGI:1932872	367	Ctns "cystinosis, nephropathic	0.861	0.645	0.443	5.2e-49

TAIR|locus:2168843 AT5G40670 "AT5G40670" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 178/270 (65%), Positives = 216/270 (80%)

Query:     1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYM 60
             M SWNS+PLEI+Y+++GWI+F +WS+SFYPQ+ILNFRR+SVVGLNFDFV+LNLTKHSSYM
Sbjct:     1 MASWNSIPLEISYEIVGWIAFASWSISFYPQLILNFRRRSVVGLNFDFVMLNLTKHSSYM 60

Query:    61 IYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKV 120
             IYNV L+FS  +Q+QYF  YG  +MIPVAANDVAFS+HAV++T +TLFQI IYERG QKV
Sbjct:    61 IYNVCLYFSPVIQKQYFDTYGDKEMIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKV 120

Query:   121 SKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKST 180
             S++++ IV VVW  AA+CFF+ALP HSWLWLI+ FN+IQV MT +KYIPQA MNF RKST
Sbjct:   121 SRLAIGIVVVVWGFAAICFFIALPTHSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKST 180

Query:   181 DGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHY 240
              G+SIGNILLDF GG  NY QM++QSIDQNSW NFYGN+GKT             + QHY
Sbjct:   181 VGWSIGNILLDFTGGLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHY 240

Query:   241 VLYPAKKAVISSKLSKDGGVEPLLKSS-DH 269
             VLYP KK   S +  ++   EPL+ SS +H
Sbjct:   241 VLYPEKKVSKSPETGEESN-EPLIDSSHEH 269

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-050522-352 ctns "cystinosis, nephropathic" [Danio rerio (taxid:7955)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 113/236 (47%), Positives = 163/236 (69%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I  Q++GWI FVAWSVSFYPQ   N++R+SVVGLNFDF+ LNLT   +Y ++NV LF+
Sbjct:   128 LFIINQIIGWIYFVAWSVSFYPQAYENWKRRSVVGLNFDFLALNLTGFIAYSVFNVGLFW 187

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
              + +Q+++ +K   + +IPV ANDV FS+HA+LLT++ + Q AIYERG QKVSK+++ ++
Sbjct:   188 VTYIQEEFLKK-DPNGVIPVDANDVFFSLHALLLTLVYICQCAIYERGGQKVSKVAIGLL 246

Query:   129 SVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
             ++ W  A V  FVA+    SWL  + +F+ I++ +TL+KYIPQA MN+RRKST+G+SIGN
Sbjct:   247 AIGWTFAFVSLFVAVAKKISWLDYLYYFSYIKLGVTLVKYIPQAHMNYRRKSTEGWSIGN 306

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 243
             +LLDF GG  +  QM +++ + + W   +G+  K              I QHY LY
Sbjct:   307 VLLDFTGGSFSLIQMFLEAYNNDKWRFIFGDPTKFGLGIFSIFFDILFIIQHYCLY 362

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279445 ctns "cystinosin" [Dictyostelium discoideum (taxid:44689)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 104/241 (43%), Positives = 156/241 (64%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I   ++GWI F  WS+SFYPQVILNFR+K+V+GL+FDF+L N+T ++ Y ++N VL+F
Sbjct:     4 LSIISIIIGWIYFACWSLSFYPQVILNFRKKNVIGLSFDFLLFNITGYACYSVFNSVLYF 63

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                V+ +Y+ KYG    IPV  +D+AF++H  +LT IT+ Q  IY+RG QK SK+ + I 
Sbjct:    64 DKLVKNEYYDKYGPP--IPVQQSDIAFAIHGFVLTAITIIQCFIYDRGNQKNSKLGIGIA 121

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
             +++W++  V   +   N  +WLW+IN+++ +++ +T IKYIPQA +NF+ KST G+S+ N
Sbjct:   122 TLIWVSLIVMTILGFSNVFTWLWVINYYSYVKLFITFIKYIPQAYLNFKNKSTSGWSVHN 181

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKK 247
             +LLDF GG  +  QM +   D  +W  F G+  K              I QHY+LY   K
Sbjct:   182 VLLDFSGGVLSLLQMFLDVADSGNWNIFTGDPVKLGLSLFSIAFDILFIIQHYILYRNPK 241

Query:   248 A 248
             +
Sbjct:   242 S 242

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|E1BXK0 CTNS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 106/240 (44%), Positives = 155/240 (64%)

Query:     5 NSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV 64
             +S+ ++   +V+GWI F+AWS+SFYPQ+  N+RRKSVVGL+FDF+ LNLT   +Y ++NV
Sbjct:   130 HSIIVKYVDEVIGWIYFLAWSISFYPQLFENWRRKSVVGLSFDFIALNLTGFIAYSVFNV 189

Query:    65 VLFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKIS 124
              LF+   +++++   Y    + PVA NDV FS+HAV LT++T+ Q  IYER  QKVSK  
Sbjct:   190 GLFWIPLIKEEFLLHYPNG-VNPVAINDVFFSLHAVALTLLTIIQCCIYERAGQKVSKTV 248

Query:   125 MAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGF 183
             + ++++ W+      F+A     +WL  +  F+ I++ +TLIKY PQA MNFRRKST G+
Sbjct:   249 VGLLALAWIFTFTTLFLAAAEEMTWLQFLFCFSYIKLAVTLIKYFPQAYMNFRRKSTVGW 308

Query:   184 SIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 243
             SIGN+LLDF+GG  +  QM +QS + + W   +G+  K              + QHY LY
Sbjct:   309 SIGNVLLDFIGGSFSLLQMFLQSYNNDEWKLIFGDPTKFGLGVFSIIFDIVFMVQHYCLY 368

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

UNIPROTKB|A7MB63 CTNS "Cystinosin" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 105/239 (43%), Positives = 153/239 (64%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI FVAWSVSFYPQVI N+RRKSVVGL+FDFV+LNL    +Y ++N+ LF+
Sbjct:   123 VSIINQVIGWIYFVAWSVSFYPQVITNWRRKSVVGLSFDFVVLNLMGFVAYSVFNIGLFW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
               ++++Q+  KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q+VS ++++ +
Sbjct:   183 VPSIKEQFLLKYPNG-VNPVDSNDVFFSLHAVALTLVVIVQCLLYERGSQRVSWLAISFL 241

Query:   129 SVVWLAAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   +   +A    + WL  +  F+ I++ +TL+KY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWLFTLIALIMAAVGATTWLQFLFCFSYIKLAVTLVKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 246
             +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDVVFFIQHFCLYRKK 360

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O60931 CTNS "Cystinosin" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 107/239 (44%), Positives = 152/239 (63%)

Query:     6 SVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVV 65
             S  + I  QV+GWI FVAWS+SFYPQVI+N+RRKSV+GL+FDFV LNLT   +Y ++N+ 
Sbjct:   120 SSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIG 179

Query:    66 LFFSSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISM 125
             L +   +++Q+  KY    + PV +NDV FS+HAV+LT+I + Q  +YERG Q+VS  ++
Sbjct:   180 LLWVPYIKEQFLLKYPNG-VNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAI 238

Query:   126 AIVSVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFS 184
               + + WL A V   VA     +WL  +  F+ I++ +TL+KY PQA MNF  KST+G+S
Sbjct:   239 GFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWS 298

Query:   185 IGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY 243
             IGN+LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY
Sbjct:   299 IGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLY 357

GO:0016021 "integral to membrane" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IMP;NAS

GO:0015811 "L-cystine transport" evidence=IDA;IMP;NAS

GO:0007420 "brain development" evidence=IMP

GO:0050890 "cognition" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=IDA;NAS

GO:0005764 "lysosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0006749 "glutathione metabolic process" evidence=IMP

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E2R8H4 CTNS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 106/250 (42%), Positives = 156/250 (62%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI FV+WS+SFYPQVI N+RRKSVVGL+FDFV LNLT   +Y ++N+ L +
Sbjct:   123 ISIINQVIGWIYFVSWSISFYPQVITNWRRKSVVGLSFDFVALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
               ++++Q+F KY    + PV +NDV FS+HAV LT++ + Q  +YERG Q VS  +++ +
Sbjct:   183 VPSIKEQFFLKYPNG-VNPVDSNDVFFSLHAVALTLVVMVQCFLYERGTQHVSWPAISFL 241

Query:   129 SVVWLAAAVCFFVALPNH-SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + W+   V   +A     +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWVFVLVTMILAAVRVITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAKK 247
             +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K 
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIFFDIVFFIQHFCLYRKKP 361

Query:   248 AVISSKLSKD 257
              + +++   D
Sbjct:   362 GLQAAQTGSD 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

UNIPROTKB|F1RLI8 CTNS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 109/250 (43%), Positives = 155/250 (62%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             L I  QV+GWI FVAWS+SFYPQVI N+RRKSVVGL+FDFV LNL    +Y ++N+ L +
Sbjct:   123 LSIINQVIGWIYFVAWSISFYPQVITNWRRKSVVGLSFDFVALNLMGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +++Q+  KY    + PV +NDV FS+HAV LT++ L Q  +YERG Q+VS  +++ +
Sbjct:   183 VPYIKEQFLLKYPNG-VNPVVSNDVFFSLHAVALTLVVLVQCCLYERGNQRVSWPAISFL 241

Query:   129 SVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL       VA + + +WL  +  F+ I++ +TLIKY PQA MNF  KST+G+SIGN
Sbjct:   242 VLSWLFTLTALIVAAVGSITWLQFLFCFSYIKLAVTLIKYFPQAYMNFHYKSTEGWSIGN 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLY---P 244
             +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY   P
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGIFSIIFDIVFFIQHFCLYRKKP 361

Query:   245 AKKAVISSKL 254
               +A I  ++
Sbjct:   362 GLQAAIPGRI 371

GO:0048058 "compound eye corneal lens development" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0006749 "glutathione metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

RGD|1308466 Ctns "cystinosin, lysosomal cystine transporter" [Rattus norvegicus (taxid:10116)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 106/239 (44%), Positives = 147/239 (61%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + +  QV+GWI F+AWSVSFYPQVI N+RRKSVVGL+FDF+ LNLT   +Y ++N+ L +
Sbjct:   123 VSVINQVIGWIYFMAWSVSFYPQVIQNWRRKSVVGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +Q+++  KY    + PV  ND  FS+HAV LT+I + Q  +YERG Q+VS+ S+  +
Sbjct:   183 VPYIQEEFLLKYPNG-VNPVDINDAFFSLHAVALTLIVILQCCLYERGNQRVSRPSIGFL 241

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct:   242 VLAWLFILVTMIVAAVGVTTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 246
             +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDIVFFIQHFYLYRKK 360

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IEA;ISO

GO:0005770 "late endosome" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006749 "glutathione metabolic process" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0007616 "long-term memory" evidence=IEA;ISO

GO:0007625 "grooming behavior" evidence=IEA;ISO

GO:0007628 "adult walking behavior" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008542 "visual learning" evidence=IEA;ISO

GO:0015184 "L-cystine transmembrane transporter activity" evidence=IEA;ISO

GO:0015811 "L-cystine transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=IEA;ISO

GO:0048058 "compound eye corneal lens development" evidence=IEA;ISO

GO:0050890 "cognition" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

MGI|MGI:1932872 Ctns "cystinosis, nephropathic" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 106/239 (44%), Positives = 147/239 (61%)

Query:     9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFF 68
             + I  QV+GWI F+AWSVSFYPQVI N+RRKSV+GL+FDF+ LNLT   +Y ++N+ L +
Sbjct:   123 VSIINQVIGWIYFMAWSVSFYPQVIQNWRRKSVIGLSFDFLALNLTGFVAYSVFNIGLLW 182

Query:    69 SSTVQQQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIV 128
                +Q+++  KY    + PV +ND  FS+HAV LT+I + Q  +YERG Q+VS  S+  +
Sbjct:   183 VPYIQEEFLLKYPNG-VNPVDSNDAFFSLHAVALTLIVILQCCLYERGNQRVSWPSIGFL 241

Query:   129 SVVWLAAAVCFFVALPN-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGN 187
              + WL   V   VA     +WL  +  F+ I++I+TLIKY PQA MNF  KST G+SIG 
Sbjct:   242 VLAWLFVLVTMIVAAVGITTWLQFLFCFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGG 301

Query:   188 ILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTXXXXXXXXXXXXXICQHYVLYPAK 246
             +LLDF GG  +  QM +QS + + W   +G+  K                QH+ LY  K
Sbjct:   302 VLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360

GO:0003333 "amino acid transmembrane transport" evidence=IMP;IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006749 "glutathione metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0007616 "long-term memory" evidence=IMP

GO:0007625 "grooming behavior" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008542 "visual learning" evidence=IMP

GO:0015184 "L-cystine transmembrane transporter activity" evidence=ISO;IMP;IDA

GO:0015811 "L-cystine transport" evidence=ISO;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0048058 "compound eye corneal lens development" evidence=IMP

GO:0050890 "cognition" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54WT7	CTNS_DICDI	No assigned EC number	0.4721	0.8363	0.8098	yes	no
P17261	ERS1_YEAST	No assigned EC number	0.3065	0.84	0.8884	yes	no
P57758	CTNS_ARATH	No assigned EC number	0.6914	0.9745	0.9925	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020590001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
TIGR00951	220	TIGR00951, 2A43, Lysosomal Cystine Transporter	3e-51
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	2e-13
pfam04193	61	pfam04193, PQ-loop, PQ loop repeat	2e-10
smart00679	32	smart00679, CTNS, Repeated motif present between t	2e-07
smart00679	32	smart00679, CTNS, Repeated motif present between t	2e-06

>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter

 Score =  166 bits (423), Expect = 3e-51
 Identities = 89/231 (38%), Positives = 126/231 (54%), Gaps = 16/231 (6%)

Query: 14  QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQ 73
           Q+LGW    AWS+SFYPQ+I N+RRKS  GL+FDFV+LNL   ++Y+I+N +  +  ++ 
Sbjct: 5   QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64

Query: 74  QQYFQKYGRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWL 133
            ++           V  NDV F++HA+L+  I L Q   YERG Q+VS   +  + V  L
Sbjct: 65  NEFPLSSPG-----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALL 119

Query: 134 AAAVCFFVALPNHS-WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDF 192
           A      VAL +    L  +   + I+V +TL+KY PQA  N+  KST   SI  + LDF
Sbjct: 120 ACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDF 179

Query: 193 LGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY 243
            G      Q I QS      VN  G+  K  L +VS +F+ LF  Q +  +
Sbjct: 180 TGLL----QRIFQS------VNETGDPLKAGLFVVSSLFNGLFAAQVFFYW 220

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 220

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 14 QVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTV 72
           VLG+IS V W VS+ PQ+I N+RRKS  GL+  F+LL L     Y++YN++  F   +
Sbjct: 3  NVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPLL 61

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN 210
           L N    I +++ L+ YIPQ I N+RRKST+G SI  +LL  LG        I+      
Sbjct: 1   LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60

Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localisation of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Length = 61

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 45.5 bits (109), Expect = 2e-07
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGG 195
           +  +PQ I N+RRKST+G SI  +LL  LG 
Sbjct: 1   VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 26 VSFYPQVILNFRRKSVVGLNFDFVLLNLT 54
          VS  PQ+I N+RRKS  GL+  FVLL L 
Sbjct: 1  VSLLPQIIKNYRRKSTEGLSILFVLLWLL 29

Function unknown, but likely to be associated with the glycosylation machinery. Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	100.0
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	100.0
KOG2913	260	consensus Predicted membrane protein [Function unk	99.96
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	99.82
PF04193	61	PQ-loop: PQ loop repeat	99.43
PF04193	61	PQ-loop: PQ loop repeat	99.26
TIGR00951	220	2A43 Lysosomal Cystine Transporter.	99.21
KOG3145	372	consensus Cystine transporter Cystinosin [Amino ac	99.1
KOG2913	260	consensus Predicted membrane protein [Function unk	99.07
smart00679	32	CTNS Repeated motif present between transmembrane	98.98
smart00679	32	CTNS Repeated motif present between transmembrane	98.78
KOG1623	243	consensus Multitransmembrane protein [General func	98.71
PHA02246	192	hypothetical protein	98.43
COG4095	89	Uncharacterized conserved protein [Function unknow	98.11
COG4095	89	Uncharacterized conserved protein [Function unknow	97.97
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	97.86
PF03083	87	MtN3_slv: Sugar efflux transporter for intercellul	97.64
PF00810	147	ER_lumen_recept: ER lumen protein retaining recept	96.12
KOG3211	230	consensus Predicted endoplasmic reticulum membrane	95.64
KOG1623	243	consensus Multitransmembrane protein [General func	95.16
KOG3106	212	consensus ER lumen protein retaining receptor [Int	94.23
PHA02246	192	hypothetical protein	94.17
KOG2489	592	consensus Transmembrane protein [General function	92.48

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-52  Score=365.43  Aligned_cols=252  Identities=55%  Similarity=0.916  Sum_probs=231.9

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 023919            1 MVSWNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKY   80 (275)
Q Consensus         1 ~~~~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~   80 (275)
                      |..+.+.++.++..++||++.+.|++|++||++.||||||++|||+||+.+|+.|...|+++|.+++|.+.+++||..++
T Consensus       112 ~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~  191 (372)
T KOG3145|consen  112 MTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSY  191 (372)
T ss_pred             EEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccC
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999998788


Q ss_pred             CCCCCCCccchhHHHHHHHHHHHHHHHHHhhhcccCCccchh-HHHHHHHHHHHHHHHHHHhhcCCc-chHHHHHHHHHH
Q 023919           81 GRDQMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSK-ISMAIVSVVWLAAAVCFFVALPNH-SWLWLINFFNAI  158 (275)
Q Consensus        81 ~~~~~~pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~  158 (275)
                      |.| .+|+..+|+.+++|+++++.+++.||+.|+|..|+.|+ +..+++.+++++..+++..+.+.. .|+++...+.++
T Consensus       192 p~g-~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syi  270 (372)
T KOG3145|consen  192 PLG-VPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYI  270 (372)
T ss_pred             CCC-CCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            865 58899999999999999999999999999999999887 567777777777777777665443 488899999999


Q ss_pred             HHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhh
Q 023919          159 QVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQ  238 (275)
Q Consensus       159 ~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q  238 (275)
                      +..+++++|+||.++||+||||+|+|+..+++|+.|++++.+|++++..+.+||+.+.+||.++.++++++++|.+++.|
T Consensus       271 Kl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~Q  350 (372)
T KOG3145|consen  271 KLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQ  350 (372)
T ss_pred             HHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCccccccc
Q 023919          239 HYVLYPAKKAVISSK  253 (275)
Q Consensus       239 ~~~~Y~~~~~~~~~~  253 (275)
                      ||++|++++..+.++
T Consensus       351 hyVly~~~~~~~s~y  365 (372)
T KOG3145|consen  351 HYVLYPRGHVLKSEY  365 (372)
T ss_pred             heeEeccccccCCCC
Confidence            998888887755444

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=100.00  E-value=1.4e-40  Score=290.02  Aligned_cols=218  Identities=39%  Similarity=0.608  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCccc
Q 023919           11 ITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAA   90 (275)
Q Consensus        11 ~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~~   90 (275)
                      .+|+++||+++++|+++++||++||+||||++|+|++|+.++++|++++.+||.+.++++..+++|..++     ++++.
T Consensus         2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~-----~~v~~   76 (220)
T TIGR00951         2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSS-----PGVTQ   76 (220)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccc-----CCCcH
Confidence            4799999999999999999999999999999999999999999999999999999989888877666543     23677


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHHHHhcccc
Q 023919           91 NDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVA-LPNHSWLWLINFFNAIQVIMTLIKYIP  169 (275)
Q Consensus        91 ~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~P  169 (275)
                      +|+++++|.++++++++.|+..|+++.|+.+..+.+.+...+.++..+.... .....|.+..+.+++++.++..++|+|
T Consensus        77 edl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiP  156 (220)
T TIGR00951        77 NDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFP  156 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhH
Confidence            8999999999999999999999998888888877654433333332222111 123467889999999999999999999


Q ss_pred             eeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 023919          170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYP  244 (275)
Q Consensus       170 Qi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y~  244 (275)
                      |++.|||||||+|+|+.++++|++|.+.++++..    ++      .+|+.++..+..++++|.+++.||+ +|+
T Consensus       157 Qi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~----~~------~gd~~~l~~~~~s~~~n~i~~~Q~~-~y~  220 (220)
T TIGR00951       157 QAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV----NE------TGDPLKAGLFVVSSLFNGLFAAQVF-FYW  220 (220)
T ss_pred             HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHH----HH------cCCHHHHHHHHHHHHHHHHHHHHHh-hcC
Confidence            9999999999999999999999999777766543    21      2789999999999999999999997 775

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.96  E-value=2.3e-29  Score=222.96  Aligned_cols=210  Identities=25%  Similarity=0.254  Sum_probs=160.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCC
Q 023919            7 VPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMI   86 (275)
Q Consensus         7 ~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~   86 (275)
                      ..++.+|.++|.++++||+++.+|||++|||+||++|+|+.|+..|++|++++.+++...                 +..
T Consensus         3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~-----------------~~~   65 (260)
T KOG2913|consen    3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ-----------------PLG   65 (260)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc-----------------ccc
Confidence            457899999999999999999999999999999999999999999999999998876421                 112


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhhhcccCCc---------cchhHHH--HHHH-------------HHHHHH------H
Q 023919           87 PVAANDVAFSMHAVLLTIITLFQIAIYERGVQ---------KVSKISM--AIVS-------------VVWLAA------A  136 (275)
Q Consensus        87 pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~---------~~s~~~~--~~~~-------------~~~~~~------~  136 (275)
                      |.   ..+.+.+..+.|.+++.|+++|+....         .++..+-  +...             -....+      .
T Consensus        66 ~~---~~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  142 (260)
T KOG2913|consen   66 ST---LKVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFL  142 (260)
T ss_pred             hh---HHHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHH
Confidence            22   234466778999999999999986433         1111110  0000             000000      0


Q ss_pred             HHHH--hhcC-----C-cchHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc
Q 023919          137 VCFF--VALP-----N-HSWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID  208 (275)
Q Consensus       137 ~~~~--~~~~-----~-~~~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~  208 (275)
                      .+..  ...+     . ...+..+.++|+++++++...|+|||++||+||||+|+|..++.++..||.++..|       
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s-------  215 (260)
T KOG2913|consen  143 ICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS-------  215 (260)
T ss_pred             HHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc-------
Confidence            1100  0000     1 12345788999999999999999999999999999999999999999999999876       


Q ss_pred             ccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 023919          209 QNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLYPAKKA  248 (275)
Q Consensus       209 ~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~  248 (275)
                          ++...|.||+.++..++.+|+.++.|++ .||+++.
T Consensus       216 ----~~~~~n~~w~~~~~~~~~~D~~~~~q~~-~~~~~~~  250 (260)
T KOG2913|consen  216 ----SYLVTNLPWLVDSKGTIYLDIFIFLQFF-NYRASKA  250 (260)
T ss_pred             ----cccccCCcccccCCcchhHHHHHHHHHH-Hhhcccc
Confidence                3456789999999999999999999986 7887773

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=99.82  E-value=4.5e-19  Score=149.05  Aligned_cols=206  Identities=19%  Similarity=0.227  Sum_probs=148.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCC
Q 023919            4 WNSVPLEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRD   83 (275)
Q Consensus         4 ~~~~~~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~   83 (275)
                      |+-.+...+|+.+||..+......++|||.|+..+||++|+|...+.++++|+...+.|+.            ...||  
T Consensus        22 ~~~cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~------------~~g~p--   87 (230)
T KOG3211|consen   22 HKDCLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY------------TSGYP--   87 (230)
T ss_pred             CccchHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh------------hcCCC--
Confidence            5677889999999999999999999999999999999999999999999999998777663            11232  


Q ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Q 023919           84 QMIPVAANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMT  163 (275)
Q Consensus        84 ~~~pv~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  163 (275)
                         +..+.+..+   .++++.+++.++++|+.+.-...... +  ..    +.+...... ...-.|+.+........+.
T Consensus        88 ---Fss~gE~~f---Ll~Q~vili~~if~f~~~~~~~v~~l-~--~~----~~v~~~~~s-k~~p~~~~~L~~~~~l~i~  153 (230)
T KOG3211|consen   88 ---FSSYGEYPF---LLLQAVILILCIFHFSGQTVTVVQFL-G--YI----ALVVSVLAS-KALPLWIITLAQNLCLPIV  153 (230)
T ss_pred             ---chhHHHHHH---HHHHHHHHHHHHHHhccceeehhhHH-H--HH----HHHHHHHHH-hhhhHHHHHHHHhcCchhh
Confidence               222222222   46788899999999983321111000 0  00    110000110 1112345555555667788


Q ss_pred             HhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHHHHHhhhhhhc
Q 023919          164 LIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDLLFICQHYVLY  243 (275)
Q Consensus       164 ~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~ii~~Q~~~~Y  243 (275)
                      .++|+||+..|||+|+|+.+|..+.++++.|..+++++.+-+          .+++..+.....+.++|+++..|. +.|
T Consensus       154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~----------t~d~~mll~~v~s~~~Ng~i~aq~-l~Y  222 (230)
T KOG3211|consen  154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQE----------TGDFLMLLRFVISLALNGLITAQV-LRY  222 (230)
T ss_pred             hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHh----------cCChhhHHHHHHHHHHhHHHHHHH-HHH
Confidence            899999999999999999999999999999999998754421          234445556677899999999998 589


Q ss_pred             cCCcc
Q 023919          244 PAKKA  248 (275)
Q Consensus       244 ~~~~~  248 (275)
                      |++++
T Consensus       223 ~s~~~  227 (230)
T KOG3211|consen  223 WSTAI  227 (230)
T ss_pred             HhcCC
Confidence            98776

>PF04193 PQ-loop: PQ loop repeat

Probab=99.43  E-value=3.9e-13  Score=93.93  Aligned_cols=53  Identities=42%  Similarity=0.742  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHH
Q 023919           12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV   64 (275)
Q Consensus        12 is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~   64 (275)
                      ++.++|+++.++++++++||++||||+||++|+|+.++.++++|++++.+|..
T Consensus         1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~   53 (61)
T PF04193_consen    1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI   53 (61)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999888765

>PF04193 PQ-loop: PQ loop repeat

Probab=99.26  E-value=4.6e-12  Score=88.49  Aligned_cols=56  Identities=30%  Similarity=0.497  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcc
Q 023919          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSI  207 (275)
Q Consensus       152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~  207 (275)
                      .+.+|+++.++++++++||+++|||+||++|+|+.++.+++.|+++++++.+....
T Consensus         2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~   57 (61)
T PF04193_consen    2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNY   57 (61)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999988776543

>TIGR00951 2A43 Lysosomal Cystine Transporter

Probab=99.21  E-value=2.5e-11  Score=106.09  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc---ccccchh--hhcHHHHHHHH
Q 023919          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID---QNSWVNF--YGNIGKTLLSL  226 (275)
Q Consensus       152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~---~~~~~~~--~~~~~~l~~~~  226 (275)
                      -..+|+...+++.++++||+++||||||++|+|+.++.++++|..++.+..+.....   +++.+..  ....-++..++
T Consensus         4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai   83 (220)
T TIGR00951         4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTL   83 (220)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHH
Confidence            467999999999999999999999999999999999999999999999876543221   1111111  01224778899


Q ss_pred             HHHHHHHHHHhhhhhhccCC
Q 023919          227 VSVVFDLLFICQHYVLYPAK  246 (275)
Q Consensus       227 ~~i~~d~ii~~Q~~~~Y~~~  246 (275)
                      ++++++++++.|.. .|.++
T Consensus        84 ~~~il~~l~~~q~~-~~~~~  102 (220)
T TIGR00951        84 HAILICFIVLHQCG-DYERG  102 (220)
T ss_pred             HHHHHHHHHHHHHh-hcccc
Confidence            99999999999974 66544

>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]

Probab=99.10  E-value=1.4e-11  Score=109.35  Aligned_cols=98  Identities=21%  Similarity=0.258  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccc---cccc--ch-hhhcHH---
Q 023919          150 WLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSID---QNSW--VN-FYGNIG---  220 (275)
Q Consensus       150 ~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~---~~~~--~~-~~~~~~---  220 (275)
                      ...+++||+..+.|.+++.||++.||||||+.|++++++.++++|...+.+..+.....   ++|.  .+ .-.+|+   
T Consensus       122 il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~n  201 (372)
T KOG3145|consen  122 ILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLN  201 (372)
T ss_pred             HHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchh
Confidence            45678999999999999999999999999999999999999999999999876654332   2222  11 111222   


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCCcc
Q 023919          221 KTLLSLVSVVFDLLFICQHYVLYPAKKA  248 (275)
Q Consensus       221 ~l~~~~~~i~~d~ii~~Q~~~~Y~~~~~  248 (275)
                      .++.++++++++++.+.|++ .|.|..+
T Consensus       202 Dv~fslHa~lmt~Iti~Qc~-~yeR~~q  228 (372)
T KOG3145|consen  202 DVVFSLHAVLMTVITILQCF-FYERGWQ  228 (372)
T ss_pred             hhhhhHHHHHHHHHHHHHHH-hhhhccc
Confidence            34779999999999999984 8876544

>KOG2913 consensus Predicted membrane protein [Function unknown]

Probab=99.07  E-value=4.6e-10  Score=100.02  Aligned_cols=91  Identities=22%  Similarity=0.254  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHH
Q 023919          147 SWLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSL  226 (275)
Q Consensus       147 ~~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~  226 (275)
                      .+.....++|.++.++|++..+|||+.|||+||++|+|+.+++.|+.|+++.+++..+...          ++...+.+.
T Consensus         4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~----------~~~~~~~~~   73 (260)
T KOG2913|consen    4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL----------GSTLKVQAV   73 (260)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc----------chhHHHHHH
Confidence            4556778899999999999999999999999999999999999999999999988776442          233333445


Q ss_pred             HHHHHHHHHHhhhhhhccCCcc
Q 023919          227 VSVVFDLLFICQHYVLYPAKKA  248 (275)
Q Consensus       227 ~~i~~d~ii~~Q~~~~Y~~~~~  248 (275)
                      .-.+.|.+++.|.+ +|++..+
T Consensus        74 yy~~~d~~l~~q~~-yy~~~~~   94 (260)
T KOG2913|consen   74 YYTLADSVLFVQCL-YYGNIYP   94 (260)
T ss_pred             HHHHHHHHHHHHHH-hcchhcc
Confidence            55677899999974 7775544

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.98  E-value=2.7e-10  Score=69.18  Aligned_cols=32  Identities=53%  Similarity=0.710  Sum_probs=29.6

Q ss_pred             hhhhHHHHHHHHhCCccccChHHHHHHHHHHH
Q 023919           26 VSFYPQVILNFRRKSVVGLNFDFVLLNLTKHS   57 (275)
Q Consensus        26 ~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~   57 (275)
                      ++++||+++|+|+||++|+|+.|+++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            46899999999999999999999999999863

Function unknown, but likely to be associated with the glycosylation machinery.

>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins

Probab=98.78  E-value=1.1e-09  Score=66.40  Aligned_cols=32  Identities=50%  Similarity=0.748  Sum_probs=29.7

Q ss_pred             hcccceeeeecccccccccchHHHHHHHHhHH
Q 023919          165 IKYIPQAIMNFRRKSTDGFSIGNILLDFLGGC  196 (275)
Q Consensus       165 ~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~  196 (275)
                      ++++||+++|||+||++|+|+.++++++.|++
T Consensus         1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~   32 (32)
T smart00679        1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI   32 (32)
T ss_pred             CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence            47899999999999999999999999999863

Function unknown, but likely to be associated with the glycosylation machinery.

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=98.71  E-value=2.3e-07  Score=81.60  Aligned_cols=168  Identities=15%  Similarity=0.123  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCc
Q 023919            9 LEITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPV   88 (275)
Q Consensus         9 ~~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv   88 (275)
                      ...+-.+.|-++..+-+.+-+|-.++++||||+||.|..=++..++++.+++-|....            .+   +..-+
T Consensus         5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~------------~~---d~lli   69 (243)
T KOG1623|consen    5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLK------------VH---DYLLI   69 (243)
T ss_pred             HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhc------------cC---ceEEE
Confidence            3444455666666777789999999999999999999999999999988875544200            00   10111


Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH---HHHHh
Q 023919           89 AANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQV---IMTLI  165 (275)
Q Consensus        89 ~~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~  165 (275)
                      ..+ .    ..+.+..+-+.-+++|.++++..+......+..+.  ..+.+..... ++-....+.+|++++   ++...
T Consensus        70 tIN-~----~G~~ie~~Yi~~f~~ya~~k~~~~~~~~~~~~~~~--~~i~~~~~~~-~~~~~~~~~lG~vc~~~nI~~~~  141 (243)
T KOG1623|consen   70 TIN-G----IGLVIETVYISIFLYYAPKKKTVKIVLALVLGVIG--LIILLTLLLF-HDPERRVSVLGIVCAVFNISMFA  141 (243)
T ss_pred             EEe-h----hcHHHHHHHHHHHheecCchheeEeeehHHHHHHH--HHHHHHHHhc-CCcceeeeeeehhhhhhhHHhhh
Confidence            111 1    12555666677778887665433222111111111  1111111111 111111223344433   34445


Q ss_pred             cccceeeeecccccccccchHHHHHHHHhHHHHH
Q 023919          166 KYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY  199 (275)
Q Consensus       166 ~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~  199 (275)
                      +.+--+.+--|+||||.++...-+..++-+.-|.
T Consensus       142 sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~  175 (243)
T KOG1623|consen  142 APLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWL  175 (243)
T ss_pred             ccHHhhhhheecCceeeechHHHHHHHHHHHHHH
Confidence            6666666888899999999998666666555553

>PHA02246 hypothetical protein

Probab=98.43  E-value=6.2e-06  Score=67.05  Aligned_cols=162  Identities=17%  Similarity=0.209  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCcc
Q 023919           10 EITYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVA   89 (275)
Q Consensus        10 ~~is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~   89 (275)
                      +.++..+...+...-.+.++||+....|.|+++|.|-.|..+-...-- .+.||...                .+....|
T Consensus         2 d~~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvg-iSfyNlL~----------------T~~~~fq   64 (192)
T PHA02246          2 DNLSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVG-ISFYNLLL----------------TDASVFQ   64 (192)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHH-HHHHHHHh----------------cCCceEE
Confidence            346677778888888899999999999999999999888766433321 12344311                1111122


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhcccCCccchhHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhcccc
Q 023919           90 ANDVAFSMHAVLLTIITLFQIAIYERGVQKVSKISMAIVSVVWLAAAVCFFVALPNHSWLWLINFFNAIQVIMTLIKYIP  169 (275)
Q Consensus        90 ~~~v~~s~~~~~~~~i~l~Q~~~Y~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P  169 (275)
                      .    .+++.-+.-.+.......||++..-..+... +      .++..+.+.       +.......++...-..+|+|
T Consensus        65 i----~svg~nl~lgivcLlv~~~rkkd~f~~~fii-i------fSLllfll~-------~~~evtQtVat~tIiLaYi~  126 (192)
T PHA02246         65 I----VSVGLNLTLGIVCLLVASYRKKDYFSIPFII-V------FSLLLFLLS-------DFTALTQTVATITIILAYVT  126 (192)
T ss_pred             E----eeeehhhhhhhhheeeehhhccccccchHHH-H------HHHHHHHHh-------hhHHHHHHHHHHHHHHHHHH
Confidence            1    1211111111122222357765433222221 1      122111111       12334445777778889999


Q ss_pred             eeeeecccccccccchHHHHHHHHhHHHHHHHHHhhc
Q 023919          170 QAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQS  206 (275)
Q Consensus       170 Qi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~  206 (275)
                      ||+.=||.|+.||.+..+.++--.|-.+-..+.++..
T Consensus       127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lth  163 (192)
T PHA02246        127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTH  163 (192)
T ss_pred             HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhC
Confidence            9999999999999999988888887776666655443

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=4.8e-06  Score=61.39  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHH
Q 023919          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVV  230 (275)
Q Consensus       151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~  230 (275)
                      .....|+++..+....++||..+.+|.|+|+++|+.++.....|-..+++    ++....|.+....|.       ++..
T Consensus         4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwli----ygILi~~lPii~aN~-------i~~i   72 (89)
T COG4095           4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLI----YGILINDLPIIIANI-------ISFI   72 (89)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH----HHHHHccCcchhHHH-------HHHH
Confidence            35678999999999999999999999999999999999999999999965    333323444444554       4455


Q ss_pred             HHHHHHhhhhhhccCC
Q 023919          231 FDLLFICQHYVLYPAK  246 (275)
Q Consensus       231 ~d~ii~~Q~~~~Y~~~  246 (275)
                      ++++++.=. +.|+.|
T Consensus        73 l~liIl~~k-I~~~~k   87 (89)
T COG4095          73 LSLIILFYK-IKYILK   87 (89)
T ss_pred             HHHHHHHHH-HHHHHh
Confidence            555555543 245433

>COG4095 Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=9.3e-05  Score=54.64  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHH
Q 023919           12 TYQVLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNV   64 (275)
Q Consensus        12 is~ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~   64 (275)
                      .-.+.|++....-.++++||.+|.+|.|++.++|+.++..-.+|..++++|.+
T Consensus         4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI   56 (89)
T COG4095           4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI   56 (89)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999876

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=97.86  E-value=9.8e-06  Score=60.38  Aligned_cols=82  Identities=23%  Similarity=0.395  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhcccccccchhhhcHHHHHHHHHHHHHHH
Q 023919          154 FFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQNSWVNFYGNIGKTLLSLVSVVFDL  233 (275)
Q Consensus       154 ~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~d~  233 (275)
                      +++.+..++...+.+||+.+.+|+||++++|+..+...++++.+|+.    ++...+|+..+..|.+       .+++.+
T Consensus         5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~----YG~l~~d~~i~~~N~~-------g~~~~~   73 (87)
T PF03083_consen    5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLI----YGILINDWPIIVPNVF-------GLVLSI   73 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhh----hhhhcCCeeEEeeHHH-------HHHHHH
Confidence            35556677788889999999999999999999999999999999954    5555567766666654       333444


Q ss_pred             HHHhhhhhhccCCc
Q 023919          234 LFICQHYVLYPAKK  247 (275)
Q Consensus       234 ii~~Q~~~~Y~~~~  247 (275)
                      +.+.-++ .|+++|
T Consensus        74 ~~~~~~~-~y~~~~   86 (87)
T PF03083_consen   74 IYLVVYY-IYPSKK   86 (87)
T ss_pred             HHHhheE-EeCCCC
Confidence            5555543 566554

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []

Probab=97.64  E-value=0.00018  Score=53.50  Aligned_cols=82  Identities=23%  Similarity=0.331  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCccccChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHhhhCCCCCCCccchhHH
Q 023919           15 VLGWISFVAWSVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYMIYNVVLFFSSTVQQQYFQKYGRDQMIPVAANDVA   94 (275)
Q Consensus        15 ilG~~~~~~~~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~~~iy~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~v~   94 (275)
                      ++|.+..++-..+.+||+++..|+||++++|+..++..++++..+..|....                + +.++-...++
T Consensus         5 ~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~----------------~-d~~i~~~N~~   67 (87)
T PF03083_consen    5 ILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI----------------N-DWPIIVPNVF   67 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc----------------C-CeeEEeeHHH
Confidence            4556666677778899999999999999999999999999999998887521                1 1233333333


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCC
Q 023919           95 FSMHAVLLTIITLFQIAIYERGV  117 (275)
Q Consensus        95 ~s~~~~~~~~i~l~Q~~~Y~~~~  117 (275)
                          .+++....+.-++.|.+++
T Consensus        68 ----g~~~~~~~~~~~~~y~~~~   86 (87)
T PF03083_consen   68 ----GLVLSIIYLVVYYIYPSKK   86 (87)
T ss_pred             ----HHHHHHHHHhheEEeCCCC
Confidence                3566667777777776653

Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane

>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway

Probab=96.12  E-value=0.082  Score=43.40  Aligned_cols=52  Identities=8%  Similarity=0.136  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHH
Q 023919          148 WLWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNY  199 (275)
Q Consensus       148 ~~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~  199 (275)
                      ..++.++++..+..+++++-+||..+-.|++.+|.+...+++.-.+.=++++
T Consensus        89 ~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~  140 (147)
T PF00810_consen   89 SFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYL  140 (147)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHH
Confidence            3468899999999999999999999999999999998887766655444443

The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane

>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]

Probab=95.64  E-value=0.023  Score=48.72  Aligned_cols=51  Identities=25%  Similarity=0.340  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHH
Q 023919          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQ  201 (275)
Q Consensus       151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s  201 (275)
                      +...+|+.-..-...-++|||.+.-..||++|+|...+.+.+.|....+..
T Consensus        30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y   80 (230)
T KOG3211|consen   30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSY   80 (230)
T ss_pred             HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeee
Confidence            445677777788888999999999999999999999999999998877543

>KOG1623 consensus Multitransmembrane protein [General function prediction only]

Probab=95.16  E-value=0.034  Score=49.21  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHHHHhHHHHHHHHHhhccccc-ccchhhhcHHHHHHHHHHHH
Q 023919          152 INFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLDFLGGCTNYSQMIVQSIDQN-SWVNFYGNIGKTLLSLVSVV  230 (275)
Q Consensus       152 ~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~~~G~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~~~i~  230 (275)
                      ..+.+.+.....+.+.+|-.++.+|||||||.|..-+++.++++.+|+-    ++.... |...+.-|..       .++
T Consensus         9 ~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~----YG~~~~~d~llitIN~~-------G~~   77 (243)
T KOG1623|consen    9 FGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLY----YGLLKVHDYLLITINGI-------GLV   77 (243)
T ss_pred             HHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHH----hhhhccCceEEEEEehh-------cHH
Confidence            3344445556666888999999999999999999999999999999953    442222 5555555543       233


Q ss_pred             HHHHHHhhhhhhccCCcc
Q 023919          231 FDLLFICQHYVLYPAKKA  248 (275)
Q Consensus       231 ~d~ii~~Q~~~~Y~~~~~  248 (275)
                      +..+.+.=+ ++|.++|+
T Consensus        78 ie~~Yi~~f-~~ya~~k~   94 (243)
T KOG1623|consen   78 IETVYISIF-LYYAPKKK   94 (243)
T ss_pred             HHHHHHHHH-heecCchh
Confidence            334444444 36776665

>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.23  E-value=0.31  Score=41.49  Aligned_cols=41  Identities=7%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHHH
Q 023919          151 LINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILLD  191 (275)
Q Consensus       151 ~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l~  191 (275)
                      +.++++..+.-+++++-+||..+--|.|.+|-+-...++.-
T Consensus       115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaL  155 (212)
T KOG3106|consen  115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFAL  155 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHH
Confidence            67788889999999999999999999999998877655443

>PHA02246 hypothetical protein

Probab=94.17  E-value=0.47  Score=39.04  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             HhhhhHHHHHHHHhCCccccChHHHHHHHHHHHH
Q 023919           25 SVSFYPQVILNFRRKSVVGLNFDFVLLNLTKHSS   58 (275)
Q Consensus        25 ~~s~iPQi~~N~r~KS~~GLS~~f~~l~l~g~~~   58 (275)
                      ...++|||+.=||.|+.||.++.+.++-.+|-.+
T Consensus       121 iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~  154 (192)
T PHA02246        121 ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS  154 (192)
T ss_pred             HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH
Confidence            4689999999999999999999999988777544

>KOG2489 consensus Transmembrane protein [General function prediction only]

Probab=92.48  E-value=0.91  Score=44.03  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHHHhcccceeeeecccccccccchHHHHH
Q 023919          129 SVVWLAAAVCFFVALPNHSW-LWLINFFNAIQVIMTLIKYIPQAIMNFRRKSTDGFSIGNILL  190 (275)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~PQi~~N~~~kst~GlS~~~~~l  190 (275)
                      +-.++++++..++..+..+| -|+++.+--.-..+-++--+||...|||.||+.-+...++.-
T Consensus       445 ~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY  507 (592)
T KOG2489|consen  445 FPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY  507 (592)
T ss_pred             HHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence            34455667776666666665 355554333333445566789999999999999999887644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00