Citrus Sinensis ID: 023930


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MSREREREMAATTPSSSSQPKMPPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHHQYYPTTSSSSSASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEEEEEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEcccEEEEEEccEEEEEEEccEEEEEEEcccEEEccccEEEEEEEEEEEEEccccHHHHHHHHHcccccEEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEccccccEEcccccccccc
cccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEccccccccccccccccccccEEEEEEEEEEEEEcccEEEEEEccEEEEEEEccEEEEEEEcccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEccccccEEEcccccccccc
MSREReremaattpssssqpkmppqtqpngthhhqrrphpppppplqpqsqyhhhhdhhqyypttsssssasfrgccCCLFLLFSFIALLILAVVLIVFLAvkpkkpqfdlqqVGVQymgistpnptssvdpsttiaaTSASLSLTIHLLFTaanpnkvgikygesKFTVMYrgiplgkasvpgfyqgahsvrnVEATIAVDRANLMQADAASLikdaslndrveLRVLGDVSAKIRVmnfdspgvqvsvdcaivisprkqsltykqcgfdgltv
msrereremaattpssssqpkmpPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHHQYYPTTSSSSSASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASlikdaslndrvELRVLGDVSAKIRvmnfdspgvqvSVDCAIVisprkqsltykqcgfdgltv
MSREREREMAAttpssssqpkmppqtqpNGThhhqrrphpppppplqpqsqyhhhhdhhqyyPTTsssssasFRGcccclfllfsfiallilavvlivflavKPKKPQFDLQQVGVQYMGISTPNPTSSVDPsttiaatsaslsltihllFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV
************************************************************************FRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGI**************IAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGF*****
**********************************************************************ASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV
************************************************************************FRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPN********TTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV
**********************************************************************ASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLT*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSREREREMAATTPSSSSQPKMPPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHHQYYPTTSSSSSASFRGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
357445649248 hypothetical protein MTR_2g007830 [Medic 0.876 0.971 0.705 2e-84
224054302213 predicted protein [Populus trichocarpa] 0.770 0.995 0.811 7e-83
449529080217 PREDICTED: uncharacterized protein LOC10 0.745 0.944 0.746 3e-82
449446081300 PREDICTED: uncharacterized protein LOC10 0.876 0.803 0.665 2e-81
449511293300 PREDICTED: uncharacterized LOC101222396 0.876 0.803 0.661 1e-80
224070603248 predicted protein [Populus trichocarpa] 0.883 0.979 0.714 8e-78
255574042261 conserved hypothetical protein [Ricinus 0.665 0.701 0.8 8e-78
225447781243 PREDICTED: uncharacterized protein LOC10 0.621 0.703 0.820 4e-74
356528779253 PREDICTED: uncharacterized protein LOC10 0.763 0.830 0.772 6e-74
449444084217 PREDICTED: uncharacterized protein LOC10 0.745 0.944 0.746 4e-72
>gi|357445649|ref|XP_003593102.1| hypothetical protein MTR_2g007830 [Medicago truncatula] gi|355482150|gb|AES63353.1| hypothetical protein MTR_2g007830 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/265 (70%), Positives = 210/265 (79%), Gaps = 24/265 (9%)

Query: 17  SSQPKMPPQTQPNGTHHHQRRPHPPPPPPLQPQSQYHHHHDHH-QYYPTT--SSSSSASF 73
           +++   PPQ  PNG +  ++RP  PPP      S Y +  ++H QYYP T   SSSSAS 
Sbjct: 2   TTRTNQPPQ--PNGVNGGEQRPRAPPP------SSYSNGFNNHPQYYPRTPARSSSSASL 53

Query: 74  RGCCCCLFLLFSFIALLILAVVLIVFLAVKPKKPQFDLQQVGVQYMGIS-TPN--PTSSV 130
           +GCCCCLFLL SF+ALL LA+VLI+ LAVKPKKPQFDLQQVGVQYMGI+ TPN  PT + 
Sbjct: 54  KGCCCCLFLLLSFLALLTLAIVLIILLAVKPKKPQFDLQQVGVQYMGITQTPNNIPTGA- 112

Query: 131 DPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVPGFYQGAH 190
                     ASLSLTI LLF AANPNKVGIKYGES FTV+YRGIPLGKASVPGFYQ AH
Sbjct: 113 ---------GASLSLTIRLLFQAANPNKVGIKYGESSFTVLYRGIPLGKASVPGFYQDAH 163

Query: 191 SVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSV 250
           SVRNV ATI V++ NL+QADAA LI+DASLNDRV+LRV GDV AKIRVMNFDSP V+VSV
Sbjct: 164 SVRNVVATIVVEKVNLLQADAADLIRDASLNDRVDLRVSGDVGAKIRVMNFDSPNVEVSV 223

Query: 251 DCAIVISPRKQSLTYKQCGFDGLTV 275
           DCAIVISPRKQSLTYKQCGFDGL+V
Sbjct: 224 DCAIVISPRKQSLTYKQCGFDGLSV 248




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054302|ref|XP_002298192.1| predicted protein [Populus trichocarpa] gi|222845450|gb|EEE82997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449529080|ref|XP_004171529.1| PREDICTED: uncharacterized protein LOC101227165 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446081|ref|XP_004140800.1| PREDICTED: uncharacterized protein LOC101222396 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511293|ref|XP_004163917.1| PREDICTED: uncharacterized LOC101222396 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224070603|ref|XP_002303177.1| predicted protein [Populus trichocarpa] gi|222840609|gb|EEE78156.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574042|ref|XP_002527937.1| conserved hypothetical protein [Ricinus communis] gi|223532641|gb|EEF34426.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225447781|ref|XP_002265790.1| PREDICTED: uncharacterized protein LOC100267543 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528779|ref|XP_003532975.1| PREDICTED: uncharacterized protein LOC100789962 [Glycine max] Back     alignment and taxonomy information
>gi|449444084|ref|XP_004139805.1| PREDICTED: uncharacterized protein LOC101207234 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
TAIR|locus:2045771231 AT2G01080 "AT2G01080" [Arabido 0.6 0.714 0.705 2.7e-59
TAIR|locus:2100177186 AT3G44380 "AT3G44380" [Arabido 0.367 0.543 0.278 0.00021
TAIR|locus:2080320235 AT3G54200 "AT3G54200" [Arabido 0.403 0.472 0.271 0.00026
TAIR|locus:2045771 AT2G01080 "AT2G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 122/173 (70%), Positives = 137/173 (79%)

Query:   103 KPKKPQFDLQQVGVQYMGISTPNPTSSVDPXXXXXXXXXXXXXXXXXXFTAANPNKVGIK 162
             KPKKPQFDLQQV V YMGIS  NP++ +DP                  FTA NPNKVGI+
Sbjct:    67 KPKKPQFDLQQVAVVYMGIS--NPSAVLDPTTASLSLTIRML------FTAVNPNKVGIR 118

Query:   163 YGESKFTVMYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLND 222
             YGES FTVMY+G+PLG+A+VPGFYQ AHS +NVEATI+VDR NLMQA AA L++DASLND
Sbjct:   119 YGESSFTVMYKGMPLGRATVPGFYQDAHSTKNVEATISVDRVNLMQAHAADLVRDASLND 178

Query:   223 RVELRVLGDVSAKIRVMNFDSPGVQVSVDCAIVISPRKQSLTYKQCGFDGLTV 275
             RVEL V GDV AKIRVMNFDSPGVQVSV+C I ISPRKQ+L YKQCGFDGL+V
Sbjct:   179 RVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQCGFDGLSV 231




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2100177 AT3G44380 "AT3G44380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080320 AT3G54200 "AT3G54200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.I.9948.1
hypothetical protein (213 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
pfam0316898 pfam03168, LEA_2, Late embryogenesis abundant prot 1e-11
PLN03160219 PLN03160, PLN03160, uncharacterized protein; Provi 3e-04
pfam04592238 pfam04592, SelP_N, Selenoprotein P, N terminal reg 0.001
>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein Back     alignment and domain information
 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 155 NPNKVGIKYGESKFTVMYRGIPLGKA-SVPGFYQGAHSVRNVEATIAVDRANLMQADAAS 213
           NPN   + Y    + + Y G  L    S       A     +E  + V   +L +     
Sbjct: 6   NPNSFPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDLARL---- 61

Query: 214 LIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSVDC 252
           L    ++   +   +      K+      S  V +S + 
Sbjct: 62  LKDLLAVGLELPYTL--RGRLKVGGPVKGSRTVPLSKEG 98


Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

>gnl|CDD|215609 PLN03160, PLN03160, uncharacterized protein; Provisional Back     alignment and domain information
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
PLN03160219 uncharacterized protein; Provisional 100.0
PF03168101 LEA_2: Late embryogenesis abundant protein; InterP 99.39
smart00769100 WHy Water Stress and Hypersensitive response. 98.7
PF12751387 Vac7: Vacuolar segregation subunit 7; InterPro: IP 98.01
PF07092238 DUF1356: Protein of unknown function (DUF1356); In 98.0
COG5608161 LEA14-like dessication related protein [Defense me 97.63
PLN03160219 uncharacterized protein; Provisional 97.14
>PLN03160 uncharacterized protein; Provisional Back     alignment and domain information
Probab=100.00  E-value=1.9e-37  Score=275.21  Aligned_cols=166  Identities=17%  Similarity=0.353  Sum_probs=147.5

Q ss_pred             HHHHHhheeeEeeCCCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEE
Q 023930           91 ILAVVLIVFLAVKPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTV  170 (275)
Q Consensus        91 ~~~~~li~~lvlrP~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V  170 (275)
                      +++++.++|++||||+|+|+|++++|++|++++.+.            .+..+|++|+++|+++|||+++|+|+++++.+
T Consensus        51 ~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~------------~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v  118 (219)
T PLN03160         51 ATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTT------------LRPGTNITLIADVSVKNPNVASFKYSNTTTTI  118 (219)
T ss_pred             HHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCC------------CceeEEEEEEEEEEEECCCceeEEEcCeEEEE
Confidence            455566799999999999999999999999875211            24578999999999999999999999999999


Q ss_pred             EECCEEEeeeecCceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEEEEEEEEEEEeCCeEEEE
Q 023930          171 MYRGIPLGKASVPGFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSAKIRVMNFDSPGVQVSV  250 (275)
Q Consensus       171 ~Y~g~~LG~~~vp~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~~r~kvg~~~s~~~~v~V  250 (275)
                      +|+|+.+|.+.+|+|+|++++++.+.+++......+..  ...|.+|.. .|.++|++.+++++|+++|+++++++.+++
T Consensus       119 ~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~-~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v  195 (219)
T PLN03160        119 YYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHVVVKM  195 (219)
T ss_pred             EECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhh-CCeEEEEEEEEEEEEEEEEEEEEEEEEEEE
Confidence            99999999999999999999999999988766554432  247999987 589999999999999999999999999999


Q ss_pred             EEEEEEeCCCceeeecccccC
Q 023930          251 DCAIVISPRKQSLTYKQCGFD  271 (275)
Q Consensus       251 ~C~l~v~~~~~~~~~~~C~~~  271 (275)
                      +|++.|+..+..+++++|+.+
T Consensus       196 ~C~v~V~~~~~~i~~~~C~~~  216 (219)
T PLN03160        196 NCTMTVNITSQAIQGQKCKRH  216 (219)
T ss_pred             EeEEEEECCCCEEeccEeccc
Confidence            999999999999999999987



>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ] Back     alignment and domain information
>smart00769 WHy Water Stress and Hypersensitive response Back     alignment and domain information
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance [] Back     alignment and domain information
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length Back     alignment and domain information
>COG5608 LEA14-like dessication related protein [Defense mechanisms] Back     alignment and domain information
>PLN03160 uncharacterized protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
1yyc_A174 LEA protein, putative late embryogenesis abundant 98.47
1xo8_A151 AT1G01470; structural genomics, protein structure 98.22
3but_A136 Uncharacterized protein AF_0446; lipid binding pro 97.92
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} Back     alignment and structure
Probab=98.47  E-value=1.9e-06  Score=73.04  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             CCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeecC-
Q 023930          105 KKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASVP-  183 (275)
Q Consensus       105 ~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~vp-  183 (275)
                      +.|++++.++++..+.+..                     ++|.+.|++.|||.+.+.+..++..+.-+|..|+++..+ 
T Consensus        43 ~~PeV~v~~v~~~~~~l~~---------------------~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~  101 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTRDG---------------------VDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPD  101 (174)
T ss_dssp             CCCEEEEEEEEEEEECSSS---------------------EEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESC
T ss_pred             CCCEEEEEEeEEeccccce---------------------EEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCC
Confidence            6899999999988654332                     678899999999999999999999999999999998876 


Q ss_pred             ceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEE
Q 023930          184 GFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVS  233 (275)
Q Consensus       184 ~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~  233 (275)
                      ++..++++++.+.+.+...-     .+...+.+++.....++.++++.+.
T Consensus       102 ~~tIpa~g~~~v~Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L~  146 (174)
T 1yyc_A          102 PGSLVGSGTTVLDVPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGLT  146 (174)
T ss_dssp             CCBCCSSEEEEEEEEEEESH-----HHHHHTCCCCCSSEEECEEEEEEEE
T ss_pred             CceECCCCcEEEEEEEEEEH-----HHHHHHHHhcCCCCccceEEEEEEE
Confidence            59999999999999888763     2334555666555678887777554



>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1 Back     alignment and structure
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1xo8a_151 Putative dessication related protein LEA14 {Thale 98.37
>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.37  E-value=1.4e-07  Score=76.32  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             eCCCCEEEEeEeEEeeeeecCCCCCCCCCCCcccccccceEeEEEEEEEEEecCceeEEEEcCeEEEEEECCEEEeeeec
Q 023930          103 KPKKPQFDLQQVGVQYMGISTPNPTSSVDPSTTIAATSASLSLTIHLLFTAANPNKVGIKYGESKFTVMYRGIPLGKASV  182 (275)
Q Consensus       103 rP~~P~f~V~~~~v~~f~l~~~~~s~~~~~~~~~~~~~~~L~~~l~~~v~~~NPNk~~i~Y~~~~~~V~Y~g~~LG~~~v  182 (275)
                      +=+.|++++.++++..+.+.                     .+++.+.+++.|||.+++..+.++..++.+|..++++..
T Consensus        18 ~~~kPev~l~~v~i~~v~~~---------------------~~~l~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~   76 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD---------------------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKI   76 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT---------------------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEE
T ss_pred             CCCCCeEEEEEEEeeecccc---------------------eEEEEEEEEEECCCCCceeeeeEEEEEEECCEEEEeEec
Confidence            44678999988887754322                     357889999999999999999999999999999999876


Q ss_pred             C-ceeecCCceEEEEEEEEEcccccchhhHHHHhhhccCCceEEEEEEEEEEE
Q 023930          183 P-GFYQGAHSVRNVEATIAVDRANLMQADAASLIKDASLNDRVELRVLGDVSA  234 (275)
Q Consensus       183 p-~F~q~~r~tt~v~~~v~~~~~~l~~~~~~~L~~d~~~~g~V~l~v~~~v~~  234 (275)
                      + ++..++++++.+.+.+.+.-     .+...+.+|+..++.++.++++.+.+
T Consensus        77 ~~~~~ipa~~~~~v~vpv~v~~-----~~l~~~~~~i~~~~~i~Y~l~g~l~~  124 (151)
T d1xo8a_          77 PDPGSLKAKDMTALDIPVVVPY-----SILFNLARDVGVDWDIDYELQIGLTI  124 (151)
T ss_dssp             EECCCCSSSSEEEEEECCCEEH-----HHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             CCCcEEcCCCcEEEEEEEEEEH-----HHHHHHHHhhccCCCccEEEEEEEEE
Confidence            5 68999999999998887653     23345555554345677776665553