Citrus Sinensis ID: 023932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVTQD
Secondary Structure (PSIPRED)
cccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHccccccccccccccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccEcccEccEccccccccccccEEccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHcccHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHccccEEEEEEcHHcccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHccccccccccccccHccHHEHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mavqvqlsslwlpsptvtvpfvhcksktkpsttslassaslssslsssapiiqtvggkqsswhggnsnnsngsieaYEEECDWADLDADLYYwtkslrpvqwypghiaKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgnRKRILVLNREDMISMADRNAWATYFAKQGTKvifsngqlgmgTMKLSRLAKALASDvnvkrrskgllpravragivgypnvgksSLINRLLKrrmcpaaprpgvTRVLKYVSQFFLLKYHQKCKVTQD
Flexible Loop (DISEMBL)
mavqvqlsslwlpsptvtVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVggkqsswhggnSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRdariplstthplmdqwlgNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAsdvnvkrrskgllpravragivgypnvgksslINRLLKRRMCpaaprpgvtRVLKYVSQFFLLkyhqkckvtqd
Low Complexity Region (SEG)
MAVQVQLSSLWLPSPTVTVPFVHCksktkpsttslassaslssslsssapIIQTVGGKQSSWHggnsnnsngsIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVTQD
Disordered region (IsUnstruct)
*******SSLWLPSPTVTVPFVHC***************************************************AYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCK****
Disordered Region (DISOPRED)
*******************************************************************************************YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM**MKLSRLAKALAS*********GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYH********
Disordered Region (DISEMBL)
MAVQVQLSSLWLPSPTVTVPFVHC***********************SAPIIQ*************SNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVTQD
Disordered Region (DISPRO)
*AVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVQVQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVTQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q819W8	296	Ribosome biogenesis GTPas	yes	no	0.578	0.537	0.421	4e-33
C5D8U8	283	Ribosome biogenesis GTPas	yes	no	0.578	0.561	0.418	1e-32
Q65JP4	283	Ribosome biogenesis GTPas	yes	no	0.578	0.561	0.421	1e-31
E0TTS5	282	Ribosome biogenesis GTPas	yes	no	0.556	0.542	0.411	2e-31
O31743	282	Ribosome biogenesis GTPas	yes	no	0.556	0.542	0.411	2e-31
A8FD69	282	Ribosome biogenesis GTPas	yes	no	0.556	0.542	0.392	8e-31
B7GGD6	284	Ribosome biogenesis GTPas	yes	no	0.578	0.559	0.412	2e-30
D5DJL5	288	Ribosome biogenesis GTPas	yes	no	0.578	0.552	0.393	1e-29
Q9WZM6	262	Ribosome biogenesis GTPas	yes	no	0.505	0.530	0.341	1e-19
Q9BT17	334	Mitochondrial GTPase 1 OS	yes	no	0.552	0.455	0.341	2e-18

>sp|Q819W8|RBGA_BACCR Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rbgA PE=3 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 105/159 (66%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PRA+R
Sbjct: 63  ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           A IVG PNVGKS+LIN+L K+ +     RPGVT   +++
Sbjct: 123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWI 161

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.
Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) GN=rbgA PE=3 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E++++LKL+D+V E+ DARIPLS+ +P++ + LGN+ RI++LN+ DM
Sbjct: 5   IQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADM 64

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL-PRAV 218
                   W  YF +Q    +  + Q G G  ++   AK +  D   K  +KG+  PR +
Sbjct: 65  ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPM 124

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           RA IVG PNVGKS+LINRL  R +     +PGVT+  +++
Sbjct: 125 RALIVGIPNVGKSTLINRLAGRNIAKTGDKPGVTKAQQWI 164

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Geobacillus sp. (strain WCH70) (taxid: 471223)

>sp|Q65JP4|RBGA_BACLD Ribosome biogenesis GTPase A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rbgA PE=3 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 103/159 (64%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              +   AW  +F K G   +  N   G G  ++   +K L  +   K ++KG+ PRA+R
Sbjct: 63  ADSSVTKAWKQHFEKDGIPTLAINSVNGQGLNQILPASKELLKEKFDKMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           A IVG PNVGKS+LINRL K+ +     RPGVT   ++V
Sbjct: 123 ALIVGIPNVGKSTLINRLAKKNIAKTGDRPGVTTAQQWV 161

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=rbgA PE=3 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 100/153 (65%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           A I+G PNVGKS+LINRL K+ +     RPG+T
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) (taxid: 655816)

>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168) GN=rbgA PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 100/153 (65%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           A I+G PNVGKS+LINRL K+ +     RPG+T
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|A8FD69|RBGA_BACP2 Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 101/153 (66%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P++++ L N+ +I++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVFELTDARIPMSSRNPMIEEILQNKPKIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F +QG + +  N   G G  ++   +K +  +   + ++KG+ PRA+R
Sbjct: 63  ADPRVTKEWQAHFEQQGVRSLAINSVDGQGLNQIITTSKEILKEKFDRMKAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           A I+G PNVGKS+LINRL K+ +     RPG+T
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

>sp|B7GGD6|RBGA_ANOFW Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rbgA PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 1/160 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK ++E+ ++LKL+D+V E+ DARIP+S+ +PL+D+ + N+ RI++LN+ DM
Sbjct: 6   IQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKADM 65

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAV 218
                   W  +FA Q    I  + Q G G  ++  +AK        K  +KG+  PRA+
Sbjct: 66  ADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRAM 125

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           RA IVG PNVGKS+LINRL  + +      PGVT+  +++
Sbjct: 126 RALIVGIPNVGKSTLINRLAGKHIAKTGDTPGVTKAQQWI 165

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)

>sp|D5DJL5|RBGA_BACMD Ribosome biogenesis GTPase A OS=Bacillus megaterium (strain DSM 319) GN=rbgA PE=3 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +++ ++LKL+D+V E+ DARIP S+ +P++D+ + N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDIVYELVDARIPQSSRNPMIDEIIVNKPRIVLLNKVDK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAV 218
                   W  Y+ +QG   +  + Q G G  ++   +K L  +   + R+KG+  PRA+
Sbjct: 63  ADPRVTQQWLDYYKEQGIYALAIDAQAGKGMKQIVSSSKELLQEKFDRMRAKGVKKPRAI 122

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           RA IVG PNVGKS+LINRL  +++     RPGVT+  +++
Sbjct: 123 RAMIVGIPNVGKSTLINRLASKKIAKTGDRPGVTQAQQWI 162

Essential protein that is required for a late step of 50S ribosomal subunit assembly. Has GTPase activity that is stimulated by interaction with the immature 50S ribosome subunit. Binds to the 23S rRNA. Required for the association of ribosomal proteins rplP and rpmA with the large subunit.

Bacillus megaterium (strain DSM 319) (taxid: 592022)

>sp|Q9WZM6|RBGA_THEMA Ribosome biogenesis GTPase A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rbgA PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 19/158 (12%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+  
Sbjct: 3   WYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDIAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
                 W  +F KQG +VI ++              K     V +K+ S     R  R  
Sbjct: 61  EKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLARVL 103

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
           IVG PN GKS++IN+L  +R      +PG+T+ +++ S
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141

Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity. Binds to the 23S rRNA.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|Q9BT17|MTG1_HUMAN Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 9/161 (5%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           +W+PGH+AK  K+++  LKL+D +IEV DARIPLS  +PL  + LG +  +LVLN+ D+ 
Sbjct: 29  RWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLA 88

Query: 161 SMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
            + ++     +   +G K VIF+N        ++  +   L    +   R + L      
Sbjct: 89  DLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENL---EYC 145

Query: 220 AGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVL 255
             ++G PNVGKSSLIN L ++ +           PG+TR +
Sbjct: 146 IMVIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPGITRAV 186

Mitochondrial GTPase. May be involved in assembly of the large ribosomal subunit.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
118485967	367	unknown [Populus trichocarpa]	0.883	0.662	0.713	8e-98
224085461	387	predicted protein [Populus trichocarpa]	0.883	0.627	0.713	1e-97
359479858	367	PREDICTED: ribosome biogenesis GTPase A-	0.905	0.678	0.708	2e-97
449464824	370	PREDICTED: ribosome biogenesis GTPase A-	0.909	0.675	0.706	3e-97
363807764	391	uncharacterized protein LOC100784201 [Gl	0.887	0.624	0.688	4e-92
17644179	372	unknown protein [Arabidopsis thaliana]	0.909	0.672	0.669	1e-89
22328255	372	GTP-binding protein [Arabidopsis thalian	0.909	0.672	0.669	1e-89
297814025	372	GTP-binding family protein [Arabidopsis	0.909	0.672	0.669	2e-89
4263509	375	hypothetical protein [Arabidopsis thalia	0.909	0.666	0.661	4e-88
218196848	371	hypothetical protein OsI_20063 [Oryza sa	0.669	0.495	0.831	1e-87

>gi|118485967|gb|ABK94828.1| unknown [Populus trichocarpa]

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 184/258 (71%), Positives = 204/258 (79%), Gaps = 15/258 (5%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKYV 258
           RMCPAAPRPGVTR L++V
Sbjct: 232 RMCPAAPRPGVTRELRWV 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085461|ref|XP_002307583.1| predicted protein [Populus trichocarpa] gi|222857032|gb|EEE94579.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/258 (71%), Positives = 204/258 (79%), Gaps = 15/258 (5%)

Query: 5   VQLSSLWLPSPTVTV---PFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQS- 60
           V++  LWLP+P +     PF+H    + P+  SL + ASLSS      P IQ VGGK + 
Sbjct: 3   VEVLGLWLPNPAIRFNRPPFLHL---SPPTRASLVTPASLSSP----PPTIQIVGGKSTP 55

Query: 61  SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120
           SW G  ++   G      EE DW D + DLY+WTK LRPVQWYPGHIAKTEKELK+QLKL
Sbjct: 56  SWQGSGNDVCGGG----GEETDWYDFETDLYHWTKPLRPVQWYPGHIAKTEKELKEQLKL 111

Query: 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180
           MDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS ADRNAWATYFA+QG KV+
Sbjct: 112 MDVVIEVRDARIPLSTTHPQMDAWLGNRKRILVLNREDMISKADRNAWATYFARQGIKVV 171

Query: 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR 240
            SNGQLGMGTMKLSR AK+LA+ VNVKRR KGLLPR VRAGIVGYPNVGKSSLINRLLKR
Sbjct: 172 LSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPRPVRAGIVGYPNVGKSSLINRLLKR 231

Query: 241 RMCPAAPRPGVTRVLKYV 258
           RMCPAAPRPGVTR L++V
Sbjct: 232 RMCPAAPRPGVTRELRWV 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479858|ref|XP_002271564.2| PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera] gi|296086696|emb|CBI32331.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 182/257 (70%), Positives = 209/257 (81%), Gaps = 8/257 (3%)

Query: 5   VQLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHG 64
           V L  +W+P+PT++   +   S+ KPSTT+LA++  L+SS +     IQ VGGK    + 
Sbjct: 3   VALCGVWMPNPTLSGNVL--PSQIKPSTTALAATPHLASSST-----IQIVGGKSHGQYV 55

Query: 65  GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
               +SN + E   EE  W +LDADLY+WTK LRP+QWYPGHIAKTEKELK+QLKLMDVV
Sbjct: 56  NGGVSSNRTFEDISEESYWTNLDADLYHWTKKLRPIQWYPGHIAKTEKELKEQLKLMDVV 115

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEV+DARIPLST+HP M+ WLGNRKRILVLNREDMIS  DRNAWATY+A QG KV+FSNG
Sbjct: 116 IEVQDARIPLSTSHPQMESWLGNRKRILVLNREDMISTEDRNAWATYYAMQGIKVVFSNG 175

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           QLGMG+MKLSRLAK LAS VNVKRR+KGLLPR VRAGIVGYPNVGKSSLINRLLKRRMCP
Sbjct: 176 QLGMGSMKLSRLAKTLASGVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCP 235

Query: 245 AAPRPGVTRVLKYVSQF 261
           AAPRPGVTR LK+V QF
Sbjct: 236 AAPRPGVTRQLKWV-QF 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464824|ref|XP_004150129.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus] gi|449507918|ref|XP_004163166.1| PREDICTED: ribosome biogenesis GTPase A-like [Cucumis sativus]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/259 (70%), Positives = 205/259 (79%), Gaps = 9/259 (3%)

Query: 1   MAVQVQLSSLWLPSPTVTVP-FVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQ 59
           M++ +  S  +LP+     P    C+S   PS  SLA SAS+SS      P IQ VGGK 
Sbjct: 1   MSLHIHPSGFFLPNTRTIYPQLFFCRSG--PSPPSLAPSASVSSP----HPTIQIVGGKT 54

Query: 60  SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK 119
           S++ G ++     + E  E   DW D +ADLYYWT +LRPVQWYPGHIAKTEKELKDQLK
Sbjct: 55  SNFLGDSTPKGASNNELLE--GDWVDFEADLYYWTNALRPVQWYPGHIAKTEKELKDQLK 112

Query: 120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           LMDVVIEVRDARIP+ST+HP MD WLGNR+RILVLNREDMIS ADRNAWATYF +QG KV
Sbjct: 113 LMDVVIEVRDARIPMSTSHPQMDAWLGNRRRILVLNREDMISSADRNAWATYFTRQGIKV 172

Query: 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 239
           +FSNGQ GMGTMKL RLAK LA+DVNVKRR+KGLLPRAVRAGIVGYPNVGKSSLINRLLK
Sbjct: 173 VFSNGQHGMGTMKLGRLAKTLAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLK 232

Query: 240 RRMCPAAPRPGVTRVLKYV 258
           RRMCPAAPRPGVTR LK+V
Sbjct: 233 RRMCPAAPRPGVTRELKWV 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807764|ref|NP_001242175.1| uncharacterized protein LOC100784201 [Glycine max] gi|255634965|gb|ACU17841.1| unknown [Glycine max]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/260 (68%), Positives = 203/260 (78%), Gaps = 16/260 (6%)

Query: 3   VQVQLSSLWLP-SPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSS 61
           + VQLSSLW+P SP +   FV       P+    ++SA     LSS +P IQ +G    S
Sbjct: 1   MSVQLSSLWVPNSPPIPQHFV-------PNRGRFSASA-----LSSQSPTIQIIGVGGPS 48

Query: 62  WHGGNSNNSNGS--IEAYEEECD-WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQL 118
           W      N N +   +  + E D W++LD DLY+WTK+LRPVQW+PGHIAK EKELK+QL
Sbjct: 49  WRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQL 108

Query: 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178
           KLMDVVIEVRD RIP+ST+HP MD WLGNRKRILVLNREDMIS ADRNAWA YF + GTK
Sbjct: 109 KLMDVVIEVRDGRIPMSTSHPQMDPWLGNRKRILVLNREDMISTADRNAWADYFTRNGTK 168

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
           V+FSNGQLGMGTMKL RLAK LA+DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL
Sbjct: 169 VVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 228

Query: 239 KRRMCPAAPRPGVTRVLKYV 258
           KRRMCPAAPRPGVTR L++V
Sbjct: 229 KRRMCPAAPRPGVTRELRWV 248

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17644179|gb|AAL38787.1| unknown protein [Arabidopsis thaliana]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 199/254 (78%), Gaps = 4/254 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHHRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKYV 258
           AAPRPGVTR +K+V
Sbjct: 241 AAPRPGVTREMKWV 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328255|ref|NP_192188.2| GTP-binding protein [Arabidopsis thaliana] gi|23297397|gb|AAN12960.1| unknown protein [Arabidopsis thaliana] gi|332656830|gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana]

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 199/254 (78%), Gaps = 4/254 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANVSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKYV 258
           AAPRPGVTR +K+V
Sbjct: 241 AAPRPGVTREMKWV 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814025|ref|XP_002874896.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297320733|gb|EFH51155.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/254 (66%), Positives = 199/254 (78%), Gaps = 4/254 (1%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQTVGGKQSSWHGG 65
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ VGGK  +    
Sbjct: 4   QLAPSPSPSPANLSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQIVGGKDLNLDVT 60

Query: 66  NSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVV 124
             ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLMDVV
Sbjct: 61  RKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLMDVV 120

Query: 125 IEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184
           IEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF+NG
Sbjct: 121 IEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIFTNG 180

Query: 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244
           +LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR++C 
Sbjct: 181 KLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240

Query: 245 AAPRPGVTRVLKYV 258
           AAPRPGVTR +K+V
Sbjct: 241 AAPRPGVTREMKWV 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4263509|gb|AAD15335.1| hypothetical protein [Arabidopsis thaliana] gi|7269764|emb|CAB77764.1| hypothetical protein [Arabidopsis thaliana]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/257 (66%), Positives = 199/257 (77%), Gaps = 7/257 (2%)

Query: 6   QLSSLWLPSPTVTVPFVHCKSKTKPSTTSLASSASLSSSLSSSAPIIQT---VGGKQSSW 62
           QL+    PSP     FVH ++  +    + A SASL ++ SS  P IQ    VGGK  + 
Sbjct: 4   QLAPSPSPSPANVSHFVHRRTFRQ---CTYAVSASLPTANSSRPPPIQANIIVGGKDLNL 60

Query: 63  HGGNSNNSNG-SIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLM 121
                ++S G  +EA E+E DW +L++D+  WT++LRPVQWYPGHI KTEKEL++QLKLM
Sbjct: 61  DVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKTEKELREQLKLM 120

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181
           DVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA YFAKQG KVIF
Sbjct: 121 DVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWARYFAKQGIKVIF 180

Query: 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241
           +NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGKSSLINRLLKR+
Sbjct: 181 TNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGKSSLINRLLKRK 240

Query: 242 MCPAAPRPGVTRVLKYV 258
           +C AAPRPGVTR +K+V
Sbjct: 241 ICAAAPRPGVTREMKWV 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218196848|gb|EEC79275.1| hypothetical protein OsI_20063 [Oryza sativa Indica Group]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 169/184 (91%)

Query: 75  EAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL 134
           E Y++E  W +LDADL YWT+SLRPVQWYPGHIAKTEKELK+QLKLMDVVIEVRDARIPL
Sbjct: 70  EDYDKEMFWENLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPL 129

Query: 135 STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194
           +T+HP MD WLGNRKRI+V+NREDM+S  DRNAWA+YFA QGTKV++SNGQLGMGTMKL 
Sbjct: 130 ATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLG 189

Query: 195 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
           R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 
Sbjct: 190 RMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE 249

Query: 255 LKYV 258
           LK+V
Sbjct: 250 LKWV 253

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
UNIPROTKB|Q5TKI5	371	OSJNBb0048I21.12 "Os05g0430400	0.669	0.495	0.831	2.5e-81
TAIR|locus:2140270	372	EMB3129 "AT4G02790" [Arabidops	0.752	0.556	0.730	6.2e-78
UNIPROTKB|Q7NEL3	296	glr3866 "Ribosome biogenesis G	0.578	0.537	0.459	2.8e-34
UNIPROTKB|Q720E9	287	LMOf2365_1290 "Ribosome biogen	0.578	0.554	0.408	4.6e-34
UNIPROTKB|Q81WJ8	296	BAS3689 "Ribosome biogenesis G	0.578	0.537	0.415	2.3e-32
TIGR_CMR|BA_3976	296	BA_3976 "GTPase family protein	0.578	0.537	0.415	2.3e-32
UNIPROTKB|O31743	282	rbgA "Ribosome biogenesis GTPa	0.578	0.563	0.402	4.2e-31
UNIPROTKB|Q3AC75	276	CHY_1427 "Ribosome biogenesis	0.574	0.572	0.375	2e-24
TIGR_CMR|CHY_1427	276	CHY_1427 "GTP-binding protein"	0.574	0.572	0.375	2e-24
UNIPROTKB|Q9BT17	334	MTG1 "Mitochondrial GTPase 1"	0.552	0.455	0.354	2.5e-19

UNIPROTKB|Q5TKI5 OSJNBb0048I21.12 "Os05g0430400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 153/184 (83%), Positives = 169/184 (91%)

Query:    75 EAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL 134
             E Y++E  W +LDADL YWT+SLRPVQWYPGHIAKTEKELK+QLKLMDVVIEVRDARIPL
Sbjct:    70 EDYDKEMFWDNLDADLRYWTRSLRPVQWYPGHIAKTEKELKEQLKLMDVVIEVRDARIPL 129

Query:   135 STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194
             +T+HP MD WLGNRKRI+V+NREDM+S  DRNAWA+YFA QGTKV++SNGQLGMGTMKL 
Sbjct:   130 ATSHPKMDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMGTMKLG 189

Query:   195 RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
             R+AK+LAS VN KRR KGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 
Sbjct:   190 RMAKSLASTVNTKRREKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRE 249

Query:   255 LKYV 258
             LK+V
Sbjct:   250 LKWV 253

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

TAIR|locus:2140270 EMB3129 "AT4G02790" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 152/208 (73%), Positives = 172/208 (82%)

Query:    52 IQTVGGKQSSWHXXXXXXXXXX-IEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKT 110
             IQ VGGK  +             +EA E+E DW +L++D+  WT++LRPVQWYPGHI KT
Sbjct:    47 IQIVGGKDLNLDVTRKDDSIGFKLEANEDEIDWMNLESDIRLWTRALRPVQWYPGHIMKT 106

Query:   111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
             EKEL++QLKLMDVVIEVRDARIPLSTTHP MD WLGNRKRILVLNREDMIS  DRN WA 
Sbjct:   107 EKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDMISNDDRNDWAR 166

Query:   171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGK 230
             YFAKQG KVIF+NG+LGMG MKL RLAK+LA DVN KRR KGLLPR+VRAGI+GYPNVGK
Sbjct:   167 YFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVRAGIIGYPNVGK 226

Query:   231 SSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             SSLINRLLKR++C AAPRPGVTR +K+V
Sbjct:   227 SSLINRLLKRKICAAAPRPGVTREMKWV 254

GO:0005525 "GTP binding" evidence=IEA;ISS;IBA

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q7NEL3 glr3866 "Ribosome biogenesis GTPase A" [Gloeobacter violaceus PCC 7421 (taxid:251221)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 73/159 (45%), Positives = 105/159 (66%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QWYPGHIAK  ++L +QLK +D+V+EV DARI  S+ H  + +  G R R++VLNR DM
Sbjct:     9 IQWYPGHIAKARRQLAEQLKQVDLVLEVLDARIAHSSRHDEIQKLAGERPRLVVLNRADM 68

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
             I      +W  +FA +G     +N Q G G   + + A+  A  VN +R  +G+ PRAVR
Sbjct:    69 IPQGMLRSWLKWFAARGEAAYPTNAQNGDGVRAVLKAAQQGAVAVNQRRAGRGMRPRAVR 128

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
               ++G+PNVGKS+LINRL+ +R   +A +PGVTR L++V
Sbjct:   129 VAVIGFPNVGKSALINRLVGKRAVESAAKPGVTRALRWV 167

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q720E9 LMOf2365_1290 "Ribosome biogenesis GTPase A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 65/159 (40%), Positives = 109/159 (68%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+DV+ E+ DARIPLS+++P++++ +  ++R+++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPMLEEIIHQKRRVIILNKADT 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YFA++G   +  N Q G G  K+ + A+ L ++   + RSKG+ PRA+R
Sbjct:    63 ADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEKLMAEKFDRLRSKGMKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             A I+G PNVGKS+LINRL K+ +     +PGVT+  +++
Sbjct:   123 AMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWI 161

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81WJ8 BAS3689 "Ribosome biogenesis GTPase A" [Bacillus anthracis (taxid:1392)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 66/159 (41%), Positives = 104/159 (65%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +++
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWI 161

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_3976 BA_3976 "GTPase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 66/159 (41%), Positives = 104/159 (65%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +++ ++LKL+DVVIE+ DAR+PLS+ +P++D+ + ++ R++VLN+ DM
Sbjct:     3 IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                     W  YF ++G   I  N Q G G  +++   K L  +   K  +KG+ PR +R
Sbjct:    63 ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRVIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             A IVG PNVGKS+LIN+L K+ +     RPGVT   +++
Sbjct:   123 ALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWI 161

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O31743 rbgA "Ribosome biogenesis GTPase A" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 64/159 (40%), Positives = 103/159 (64%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct:     3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query:   160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct:    63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             A I+G PNVGKS+LINRL K+ +     RPG+T   ++V
Sbjct:   123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161

GO:0003924 "GTPase activity" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

UNIPROTKB|Q3AC75 CHY_1427 "Ribosome biogenesis GTPase A" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/160 (37%), Positives = 96/160 (60%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++++
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWI 160

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1427 CHY_1427 "GTP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/160 (37%), Positives = 96/160 (60%)

Query:   100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
             + WYPGH+ KT+K L  Q+KL+DVV+E+RDARIPLS+ +P +++   N+ RI++ N++D+
Sbjct:     2 INWYPGHMFKTKKALLAQVKLVDVVLEIRDARIPLSSKNPDIEEICKNKPRIVLFNKKDL 61

Query:   160 ISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218
               +             +G        +   G  ++  + + +      K   KGL PR +
Sbjct:    62 ADVEKTEEILKKLPWPEGVYYCLVESKATGGLKEVWNIIEKVYGQYKEKWSGKGLRPRPL 121

Query:   219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
             R  +VG PNVGKS++INRLLKR +   A +PGVTR ++++
Sbjct:   122 RGMVVGIPNVGKSTVINRLLKRSVKTGA-KPGVTRGVQWI 160

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BT17 MTG1 "Mitochondrial GTPase 1" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 57/161 (35%), Positives = 90/161 (55%)

Query:   101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
             +W+PGH+AK  K+++  LKL+D +IEV DARIPLS  +PL  + LG +  +LVLN+ D+ 
Sbjct:    29 RWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLA 88

Query:   161 SMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              + ++     +   +G K VIF+N        ++  +   L    +   R + L    + 
Sbjct:    89 DLTEQQKIMQHLEGEGLKNVIFTNCVKDENVKQIIPMVTELIGRSHRYHRKENL-EYCIM 147

Query:   220 AGIVGYPNVGKSSLINRLLKRRMCPA-APR----PGVTRVL 255
               ++G PNVGKSSLIN L ++ +    A R    PG+TR +
Sbjct:   148 --VIGVPNVGKSSLINSLRRQHLRKGKATRVGGEPGITRAV 186

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0042254 "ribosome biogenesis" evidence=IBA

GO:0006184 "GTP catabolic process" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1252	SubName- Full=Putative uncharacterized protein; (387 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00020856	hypothetical protein (483 aa)			•				•		0.725
	gw1.X.4400.1	hypothetical protein (451 aa)				•			•		0.709
	grail3.7955000101	Predicted protein (372 aa)	•								0.497
	eugene3.00031274	aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)	•			•					0.451
	eugene3.160500001	Predicted protein (113 aa)	•								0.451
	fgenesh4_pg.C_scaffold_1424000002	hypothetical protein (780 aa)	•								0.439
	gw1.XVI.341.1	hypothetical protein (185 aa)	•			•					0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	2e-71
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	1e-68
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	1e-68
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	6e-52
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	8e-26
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	2e-24
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	3e-24
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	4e-20
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	9e-16
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-13
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	2e-09
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	4e-09
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	7e-09
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	8e-09
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	3e-08
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	3e-08
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	4e-07
cd00880	161	cd00880, Era_like, E	9e-07
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-06
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	1e-06
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	1e-06
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-06
cd04163	168	cd04163, Era, E	4e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-06
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	3e-05
COG1159	298	COG1159, Era, GTPase [General function prediction	3e-05
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	3e-05
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	5e-05
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	5e-05
cd01898	170	cd01898, Obg, Obg GTPase	1e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-04
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	1e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	2e-04
PRK12297	424	PRK12297, obgE, GTPase CgtA; Reviewed	3e-04
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	3e-04
PTZ00258	390	PTZ00258, PTZ00258, GTP-binding protein; Provision	3e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	5e-04
cd01878	204	cd01878, HflX, HflX GTPase family	6e-04
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	7e-04
PRK12299	335	PRK12299, obgE, GTPase CgtA; Reviewed	0.001
COG0536	369	COG0536, Obg, Predicted GTPase [General function p	0.001
PRK03003	472	PRK03003, PRK03003, GTP-binding protein Der; Revie	0.002
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	0.002
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.002
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	0.002
cd01900	274	cd01900, YchF, YchF GTPase	0.003
PRK12288	347	PRK12288, PRK12288, GTPase RsgA; Reviewed	0.003
COG0012	372	COG0012, COG0012, Predicted GTPase, probable trans	0.003
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	0.003
PRK09601	364	PRK09601, PRK09601, GTP-binding protein YchF; Revi	0.003
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	0.004

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score =  220 bits (564), Expect = 2e-71
 Identities = 76/167 (45%), Positives = 113/167 (67%), Gaps = 3/167 (1%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K+ LKL+DVVIEV DARIPLS+ +P++D+ +GN+ R+L+LN+ D+ 
Sbjct: 5   QWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLA 64

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
                  W  YF +QG K +  N + G G  K+ + AK L  + N +R++KG+ PRA+RA
Sbjct: 65  DPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRA 124

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV---SQFFLL 264
            I+G PNVGKS+LINRL  +++     RPGVT+  +++       LL
Sbjct: 125 MIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELL 171

Length = 287

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score =  213 bits (545), Expect = 1e-68
 Identities = 77/167 (46%), Positives = 112/167 (67%), Gaps = 3/167 (1%)

Query: 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI 160
           QW+PGH+AK  +E+K++LKL+DVVIEV DARIPLS+ +P++D+  GN+ R++VLN+ D+ 
Sbjct: 2   QWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLA 61

Query: 161 SMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220
             A    W  YF ++G K +  N + G G  K+ + AK L  + N K ++KGLL R +RA
Sbjct: 62  DPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLLNRPIRA 121

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLL 264
            IVG PNVGKS+LINRL  +++     RPGVT+  +++       LL
Sbjct: 122 MIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELL 168

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score =  209 bits (535), Expect = 1e-68
 Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 4/166 (2%)

Query: 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS 161
           W+PGH+AK  +++K++LKL+DVVIEVRDARIPLS+ +P +D+ LGN+ R++VLN+ D+  
Sbjct: 1   WFPGHMAKALRQIKEKLKLVDVVIEVRDARIPLSSRNPDLDKILGNKPRLIVLNKADLAD 60

Query: 162 MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221
            A    W  YF  QG  V+F N + G G  KL + AK L  + N K ++KGLLPR +RA 
Sbjct: 61  PAKTKKWLKYFKSQGEPVLFVNAKNGKGVKKLLKKAKKLLKE-NEKLKAKGLLPRPLRAM 119

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKYVSQFFLL 264
           +VG PNVGKS+LINRL  +++     +PGVTR    ++      LL
Sbjct: 120 VVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRGQQWIRIGPNIELL 165

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score =  172 bits (437), Expect = 6e-52
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 93  WTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRIL 152
             K    +QW+PGH+ K +++LK+ LK +DVV+EV DAR PL T +P +++ +  + ++L
Sbjct: 7   RLKHYNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLL 66

Query: 153 VLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSK 211
           VLN+ D+        W  YF K+ G K IF + +   G  K+ +  + L+ +   + + K
Sbjct: 67  VLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK 126

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           GLL R +R G+VGYPNVGKS+LINRLL +++   + RPG T+ ++++
Sbjct: 127 GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWI 173

Length = 322

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 99.0 bits (247), Expect = 8e-26
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 11/140 (7%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQ--WLGNRKRILVLNREDMISMADRNAWATYFAK-QGTK 178
           DVV+EV DAR PLS+ +P ++      N+K I+VLN+ D++       W    ++  GTK
Sbjct: 1   DVVVEVVDARDPLSSRNPDIEVLINEKNKKLIMVLNKADLVPKEVLRKWVAELSELYGTK 60

Query: 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
             F +   G G +KL             K++ K    + +R G+VG PNVGKSS IN LL
Sbjct: 61  TFFISATNGQGILKLKAEIT--------KQKLKLKYKKGIRVGVVGLPNVGKSSFINALL 112

Query: 239 KRRMCPAAPRPGVTRVLKYV 258
            +        PG T++ + V
Sbjct: 113 NKFKLKVGSIPGTTKLQQDV 132

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 95.5 bits (238), Expect = 2e-24
 Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 13/136 (9%)

Query: 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ 175
           +K  DVV+EV DAR P  T    +++      +K I+VLN+ D++       W   F  +
Sbjct: 9   IKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLVPREVLEKWKEVFESE 68

Query: 176 GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
           G  V++ + +  +GT  L R  K LA D            + V  G+VGYP VGKSS+IN
Sbjct: 69  GLPVVYVSARERLGTRILRRTIKELAIDG-----------KPVIVGVVGYPKVGKSSIIN 117

Query: 236 RLLKRRMCPAAPRPGV 251
            L  R     +P PG 
Sbjct: 118 ALKGRHSASTSPIPGS 133

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 95.7 bits (239), Expect = 3e-24
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 22/158 (13%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQW---LGNRKR-ILVLNREDMISMADRNAWATYFAKQGT 177
           DV++EV DAR PL    P +++    LG  K+ +LVLN+ D++   +   W  Y   +  
Sbjct: 1   DVILEVLDARDPLGCRCPQVERAVLVLGPNKKLVLVLNKIDLVPKENVEKWLKYLRNEFP 60

Query: 178 KVIF------SNGQLGMGTMK------LSRLAKALASDVNVK-----RRSKGLLPRAVRA 220
            V F          L   + K      L   +  L +D  +K      R+KG+   ++  
Sbjct: 61  TVAFKASTQQQKKNLSRKSKKVKASDDLLSSSACLGADALLKLLKNYARNKGI-KTSITV 119

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           G+VGYPNVGKSS+IN L + R C     PGVT+ ++ V
Sbjct: 120 GVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEV 157

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 19/145 (13%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQGT 177
           DV+I+V DAR P+ T    ++++L   K     I VLN+ D++       W    +K+  
Sbjct: 10  DVIIQVLDARDPMGTRCKHVEKYLRKEKPHKHLIFVLNKCDLVPTWVTKRWVKVLSKEYP 69

Query: 178 KVIFS---NGQLGMGT-MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + F        G G  + L R    L SD            + +  G +GYPNVGKSS+
Sbjct: 70  TLAFHASITNPFGKGALINLLRQFAKLHSD-----------KKQISVGFIGYPNVGKSSV 118

Query: 234 INRLLKRRMCPAAPRPGVTRVLKYV 258
           IN L  +++C  AP PG T+V +Y+
Sbjct: 119 INTLRSKKVCKVAPIPGETKVWQYI 143

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 71.9 bits (177), Expect = 9e-16
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 34/136 (25%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGT 177
           DVV+++ DAR PL    P +++++     +++ +L+LN+ D+++   R AWA YF K+G 
Sbjct: 13  DVVVQIVDARNPLFFRCPDLEKYVKEVDPSKENVLLLNKADLVTEEQRKAWARYFKKEGI 72

Query: 178 KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
            V+F            S L +A                     G+VGYPNVGKSSLIN L
Sbjct: 73  VVLFF-----------SALNEAT-------------------IGLVGYPNVGKSSLINAL 102

Query: 238 LKRRMCPAAPRPGVTR 253
           +  +    +  PG T+
Sbjct: 103 VGSKKVSVSSTPGKTK 118

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           R  +VG PNVGKS+LIN L   ++   +  PG TR    
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPIL 39

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 22/36 (61%), Positives = 24/36 (66%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           IVG PNVGKS+L NRL  RR    +  PGVTR  KY
Sbjct: 2   IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKY 37

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           IVG PNVGKS+L NRL  +R    +  PGVTR  KY
Sbjct: 4   IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKY 39

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 14/138 (10%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179
           DV++ V D R  ++     + + L    +  ILV+N+ D +   +    A  F   G   
Sbjct: 85  DVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGE 141

Query: 180 IF----SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLIN 235
                  +G+ G+G + L  + + L  D   +   +      ++  I+G PNVGKSSLIN
Sbjct: 142 PVPISAEHGR-GIGDL-LDAVLELLPPDEEEEEEEE---TDPIKIAIIGRPNVGKSSLIN 196

Query: 236 RLLKRRMCPAAPRPGVTR 253
            +L       +   G TR
Sbjct: 197 AILGEERVIVSDIAGTTR 214

Length = 444

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 55.5 bits (135), Expect = 8e-09
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 19/140 (13%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYFAKQG- 176
           DV++ V D R  L+     + +WL  RK     ILV N+ D          A  F   G 
Sbjct: 80  DVILFVVDGREGLTPEDEEIAKWL--RKSGKPVILVANKIDGKKEDAV---AAEFYSLGF 134

Query: 177 TKVIF---SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSL 233
            + I     +G+ G+G + L  + + L  +   +    G     ++  I+G PNVGKS+L
Sbjct: 135 GEPIPISAEHGR-GIGDL-LDAILELLPEEEEEEEEEDG----PIKIAIIGRPNVGKSTL 188

Query: 234 INRLLKRRMCPAAPRPGVTR 253
           +N LL       +   G TR
Sbjct: 189 VNALLGEERVIVSDIAGTTR 208

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           IVG PNVGKS+L NRL  RR+   +  PGVTR   Y
Sbjct: 8   IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIY 43

Length = 444

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 53.5 bits (130), Expect = 3e-08
 Identities = 21/36 (58%), Positives = 23/36 (63%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           IVG PNVGKS+L NRL  +R    A  PGVTR   Y
Sbjct: 6   IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIY 41

Length = 435

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 48.6 bits (117), Expect = 4e-07
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            ++  I+G PNVGKSSL+N LL       +   G TR
Sbjct: 2   PIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTR 38

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 47.2 bits (113), Expect = 9e-07
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            I G PNVGKSSL+N LL + +   +P PG TR
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTR 33

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 48.9 bits (118), Expect = 1e-06
 Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 38/149 (25%)

Query: 122 DVVIEVRDARIPLSTTHPLMD----QWLGNRKR----ILVLN----REDMISMADRNAWA 169
           DV++ V D R  L+      D    + L  RK     ILV+N     ++     +     
Sbjct: 82  DVILFVVDGRAGLTP----ADEEIAKIL--RKSNKPVILVVNKVDGPDEEADAYE----- 130

Query: 170 TYFAKQGTKVIF----SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225
             F   G    +     +G+ G+G + L  + + L  +       + +     +  I+G 
Sbjct: 131 --FYSLGLGEPYPISAEHGR-GIGDL-LDAILEELPEEEEEDEEDEPI-----KIAIIGR 181

Query: 226 PNVGKSSLINRLLKR-RMCPAAPRPGVTR 253
           PNVGKSSLIN LL   R+   +   G TR
Sbjct: 182 PNVGKSSLINALLGEERVI-VSDIAGTTR 209

Length = 435

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
              P  V A +VG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 34  EGGPLPVVA-VVGRPNVGKSTLVNRILGRREAVVEDVPGVTR 74

Length = 472

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           IVG PNVGKS+L+NR+L RR       PGVTR
Sbjct: 280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTR 311

Length = 712

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR 253
           I G PNVGKSSL+N L  R     A      G TR
Sbjct: 8   IAGKPNVGKSSLLNALAGR---DRAIVSDIAGTTR 39

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206726 cd04163, Era, E

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++G   I+G PNVGKS+L+N L+ +++   +P+P  TR
Sbjct: 2   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR 39

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
            +VG   VGKSSL+N LL   +   +  PG TR      
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV 39

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR 253
           I G PNVGKSSL+N LL       A      G TR
Sbjct: 220 IAGRPNVGKSSLLNALLGEE---RAIVTDIAGTTR 251

Length = 449

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++    I+G PNVGKS+L+N L+ +++   +P+P  TR
Sbjct: 5   KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR 42

Length = 298

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 22/103 (21%)

Query: 145 LGNRKRILVLNREDMISMADR----NAWAT-YFAKQGTK---VIFSNGQLGMGTMKLSRL 196
           +G    +LV N+ D++  +        W      + G K   +I  + + G G  +L   
Sbjct: 88  VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDK 147

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK 239
            K   +  +V               +VG  NVGKSSLIN+LLK
Sbjct: 148 IKKARNKKDVY--------------VVGVTNVGKSSLINKLLK 176

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 222 IVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKYVSQFFLL 264
             G  NVGKSSLIN L  R ++   +  PG T+++     FF +
Sbjct: 4   FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI----NFFNV 43

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 43.5 bits (104), Expect = 5e-05
 Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++G   IVG PNVGKS+L+N L+ +++   +P+P  TR
Sbjct: 4   KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR 41

Length = 292

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG PN GKS+L++ +
Sbjct: 3   VGLVGLPNAGKSTLLSAI 20

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            IVG PNVGKS+L+NRLL  ++     +PG TR
Sbjct: 5   VIVGDPNVGKSTLLNRLLGNKISITEYKPGTTR 37

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/19 (68%), Positives = 15/19 (78%)

Query: 222 IVGYPNVGKSSLINRLLKR 240
           +VG  NVGKS+LIN LLK 
Sbjct: 130 VVGATNVGKSTLINALLKS 148

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           I+G PNVGKSSL+N LL R         G TR
Sbjct: 222 IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR 253

Length = 454

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
              I+G PNVGKS+L+N+L  +++   +P+   TR
Sbjct: 2   FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR 36

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed

 Score = 41.6 bits (99), Expect = 3e-04
 Identities = 10/18 (55%), Positives = 16/18 (88%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG+PNVGKS+L++ +
Sbjct: 161 VGLVGFPNVGKSTLLSVV 178

Length = 424

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 223 VGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKY 257
            G  NVGKSSLIN L  ++ +   +  PG T+++ +
Sbjct: 30  AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF 65

Length = 200

>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 197 AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249
                  V + R    L     + GIVG PNVGKS+  N  L ++  PA   P
Sbjct: 6   KMEEEKKVLLGRPGNNL-----KMGIVGLPNVGKSTTFN-ALCKQQVPAENFP 52

Length = 390

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 221 GIVGYPNVGKSSLINRL 237
           G+VG PN GKS+LI+ +
Sbjct: 161 GLVGLPNAGKSTLISAV 177

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|206666 cd01878, HflX, HflX GTPase family

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L       ++   RR +  +P      +VGY N GKS+L N L
Sbjct: 14  RIAKLRKELEKVKKQRELQRARRKRSGVPTV---ALVGYTNAGKSTLFNAL 61

HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 13/16 (81%), Positives = 15/16 (93%)

Query: 222 IVGYPNVGKSSLINRL 237
           I GYPNVGKSSL+N+L
Sbjct: 5   IAGYPNVGKSSLVNKL 20

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG PN GKS+LI+ +
Sbjct: 161 VGLVGLPNAGKSTLISAV 178

Length = 335

>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 220 AGIVGYPNVGKSSLINRL 237
            G+VG PN GKS+L++ +
Sbjct: 162 VGLVGLPNAGKSTLLSAV 179

Length = 369

>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 2/23 (8%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRL 237
           PR  R  +VG PNVGKSSL+N+L
Sbjct: 211 PR--RVALVGKPNVGKSSLLNKL 231

Length = 472

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQF 261
           G+VG PNVGKS+L++  L       A  P  T     V  F
Sbjct: 1   GLVGLPNVGKSTLLS-ALTSAKVEIASYPFTTLEP-NVGVF 39

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 38.5 bits (91), Expect = 0.002
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 18/88 (20%)

Query: 151 ILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRS 210
           ++VLN+ D++   +       + K G  V+  + + G G   L  L + L    +V    
Sbjct: 37  VIVLNKADLVDDEELEELLEIYEKLGYPVLAVSAKTGEG---LDELRELLKGKTSV---- 89

Query: 211 KGLLPRAVRAGIVGYPNVGKSSLINRLL 238
                      +VG   VGKS+L+N LL
Sbjct: 90  -----------LVGQSGVGKSTLLNALL 106

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 20/86 (23%)

Query: 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPR-------AVRAGIVGYPNVGKSSLINRLL 238
           +G+   KL+ L + L      K +S G                +VG+P+VGKS+L+N+L 
Sbjct: 28  IGLLKAKLAELREELEKR---KSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLT 84

Query: 239 KRRMCPAA-------PRPGVTRVLKY 257
             +   A        P PG   +L+Y
Sbjct: 85  NTKSEVADYPFTTLEPVPG---MLEY 107

Length = 365

>gnl|CDD|206687 cd01900, YchF, YchF GTPase

 Score = 38.2 bits (90), Expect = 0.003
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 220 AGIVGYPNVGKSSLINRLLK 239
            GIVG PNVGKS+L N L K
Sbjct: 1   IGIVGLPNVGKSTLFNALTK 20

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274

>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 21/91 (23%)

Query: 151 ILVLNREDMISMADR---NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVK 207
           ++VLN+ D++    R   N     +   G +V+  +   G G   L  L  AL   +++ 
Sbjct: 154 LIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG---LEELEAALTGRISI- 209

Query: 208 RRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238
                          VG   VGKSSLIN LL
Sbjct: 210 --------------FVGQSGVGKSSLINALL 226

Length = 347

>gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 12/20 (60%), Positives = 16/20 (80%)

Query: 216 RAVRAGIVGYPNVGKSSLIN 235
            +++ GIVG PNVGKS+L N
Sbjct: 1   MSLKIGIVGLPNVGKSTLFN 20

Length = 372

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
             G  NVGKSSLIN L  R+
Sbjct: 23  FAGRSNVGKSSLINALTNRK 42

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed

 Score = 38.1 bits (90), Expect = 0.003
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLK 239
            ++ GIVG PNVGKS+L N L K
Sbjct: 2   GLKCGIVGLPNVGKSTLFNALTK 24

Length = 364

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLK 265
           +++   G      +  IVG PNVGKSSL+N LLK+     +   G TR    V   F L 
Sbjct: 197 LEKLDDG-----FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTR--DVVEGDFELN 249

Query: 266 YH 267
             
Sbjct: 250 GI 251

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	100.0
PRK09563	287	rbgA GTPase YlqF; Reviewed	100.0
COG1161	322	Predicted GTPases [General function prediction onl	100.0
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.97
COG1160	444	Predicted GTPases [General function prediction onl	99.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.96
KOG2484	435	consensus GTPase [General function prediction only	99.95
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	99.95
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	99.95
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.94
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.93
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.93
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.91
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.91
KOG2423	572	consensus Nucleolar GTPase [General function predi	99.89
PRK12289	352	GTPase RsgA; Reviewed	99.89
PRK13796	365	GTPase YqeH; Provisional	99.89
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.88
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK12288	347	GTPase RsgA; Reviewed	99.83
PRK00098	298	GTPase RsgA; Reviewed	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.8
COG1162	301	Predicted GTPases [General function prediction onl	99.73
PRK01889	356	GTPase RsgA; Reviewed	99.61
COG2262	411	HflX GTPases [General function prediction only]	99.47
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.46
COG0486	454	ThdF Predicted GTPase [General function prediction	99.42
COG0218	200	Predicted GTPase [General function prediction only	99.3
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.25
COG1159	298	Era GTPase [General function prediction only]	99.24
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.17
COG1159	298	Era GTPase [General function prediction only]	99.17
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.15
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.15
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.12
PRK15494	339	era GTPase Era; Provisional	99.11
PRK12298	390	obgE GTPase CgtA; Reviewed	99.07
COG0218	200	Predicted GTPase [General function prediction only	99.05
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.04
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.02
PRK00089	292	era GTPase Era; Reviewed	99.02
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.0
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.0
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.99
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.98
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.98
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.95
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.92
PRK12296	500	obgE GTPase CgtA; Reviewed	98.92
PRK12299	335	obgE GTPase CgtA; Reviewed	98.92
PRK11058	426	GTPase HflX; Provisional	98.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.91
KOG0410	410	consensus Predicted GTP binding protein [General f	98.9
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.9
cd00881	189	GTP_translation_factor GTP translation factor fami	98.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.88
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.84
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.8
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.79
PRK13768	253	GTPase; Provisional	98.79
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.78
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.77
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.77
COG0486	454	ThdF Predicted GTPase [General function prediction	98.77
COG1084	346	Predicted GTPase [General function prediction only	98.76
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.76
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.75
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.75
PLN00223	181	ADP-ribosylation factor; Provisional	98.74
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.74
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.73
PRK12298	390	obgE GTPase CgtA; Reviewed	98.73
PRK09866	741	hypothetical protein; Provisional	98.73
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.72
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.72
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.71
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.71
PRK12297	424	obgE GTPase CgtA; Reviewed	98.71
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.71
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.7
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.69
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.69
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.68
PTZ00099	176	rab6; Provisional	98.68
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.68
COG1160	444	Predicted GTPases [General function prediction onl	98.67
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.67
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.66
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.66
PRK00093	435	GTP-binding protein Der; Reviewed	98.66
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.66
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.65
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.65
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.64
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.64
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.64
KOG1249	572	consensus Predicted GTPases [General function pred	98.63
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.63
PTZ00258	390	GTP-binding protein; Provisional	98.63
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.62
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.62
PRK04213	201	GTP-binding protein; Provisional	98.62
CHL00189	742	infB translation initiation factor 2; Provisional	98.61
PRK15494	339	era GTPase Era; Provisional	98.61
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.61
PRK11058	426	GTPase HflX; Provisional	98.61
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.61
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.61
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.61
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.6
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.6
PTZ00133	182	ADP-ribosylation factor; Provisional	98.59
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.59
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.59
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.58
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.58
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.58
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.58
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.57
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.57
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.57
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.57
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.57
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.56
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.56
PRK03003	472	GTP-binding protein Der; Reviewed	98.56
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.56
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.56
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.56
PRK05433	600	GTP-binding protein LepA; Provisional	98.56
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.55
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.55
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.55
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.55
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.55
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.54
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.54
PRK00089	292	era GTPase Era; Reviewed	98.54
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.54
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.54
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.54
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.54
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.53
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.53
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.53
PRK04213	201	GTP-binding protein; Provisional	98.52
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.51
CHL00071	409	tufA elongation factor Tu	98.51
PRK12299	335	obgE GTPase CgtA; Reviewed	98.51
PRK12296	500	obgE GTPase CgtA; Reviewed	98.51
PRK12317	425	elongation factor 1-alpha; Reviewed	98.5
PRK12736	394	elongation factor Tu; Reviewed	98.5
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.49
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.49
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.49
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.49
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.49
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.48
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.48
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.48
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.48
PRK05306	787	infB translation initiation factor IF-2; Validated	98.48
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.48
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.47
COG2262	411	HflX GTPases [General function prediction only]	98.47
PRK12735	396	elongation factor Tu; Reviewed	98.47
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.46
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.46
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.46
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.46
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.45
PRK00049	396	elongation factor Tu; Reviewed	98.45
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.44
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.44
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.44
PRK12297	424	obgE GTPase CgtA; Reviewed	98.43
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.43
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.42
PTZ00369	189	Ras-like protein; Provisional	98.42
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.42
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.42
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.41
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.41
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.41
PLN03118	211	Rab family protein; Provisional	98.41
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.41
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.41
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.4
COG0536	369	Obg Predicted GTPase [General function prediction	98.4
PLN03127	447	Elongation factor Tu; Provisional	98.39
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.38
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.38
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.37
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.37
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.37
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.36
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.36
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.36
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.36
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.36
COG1163	365	DRG Predicted GTPase [General function prediction	98.35
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.35
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.35
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.35
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.35
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.34
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.34
PLN00043	447	elongation factor 1-alpha; Provisional	98.34
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.34
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.33
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.33
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.33
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.32
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	98.32
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.32
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.32
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.31
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.31
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	98.31
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	98.31
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.3
PTZ00141	446	elongation factor 1- alpha; Provisional	98.3
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.3
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	98.29
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.29
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.29
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.29
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.29
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.28
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.28
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.27
PLN03110	216	Rab GTPase; Provisional	98.27
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.27
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.27
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.25
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.25
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.24
PLN03108	210	Rab family protein; Provisional	98.24
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.24
PLN03126	478	Elongation factor Tu; Provisional	98.23
PRK14845	1049	translation initiation factor IF-2; Provisional	98.23
KOG1145	683	consensus Mitochondrial translation initiation fac	98.22
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.22
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.22
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.22
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.2
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.2
PRK04004	586	translation initiation factor IF-2; Validated	98.19
COG2229	187	Predicted GTPase [General function prediction only	98.17
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.17
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.17
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.16
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	98.15
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.14
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.12
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.12
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	98.11
PRK10218	607	GTP-binding protein; Provisional	98.11
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.1
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.1
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.1
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.1
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	98.1
COG0536	369	Obg Predicted GTPase [General function prediction	98.1
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.08
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.06
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.06
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.06
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.05
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.05
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.03
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.03
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.02
cd01896	233	DRG The developmentally regulated GTP-binding prot	97.99
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.99
KOG0410	410	consensus Predicted GTP binding protein [General f	97.99
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.98
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	97.96
COG3596	296	Predicted GTPase [General function prediction only	97.96
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.95
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.92
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.91
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.89
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	97.88
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.87
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.87
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	97.84
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.83
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.82
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.81
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.81
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	97.81
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	97.81
PRK12739	691	elongation factor G; Reviewed	97.78
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	97.77
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.76
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.74
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.72
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.72
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.71
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.69
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	97.69
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	97.68
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	97.68
PLN03118	211	Rab family protein; Provisional	97.68
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.68
COG1084	346	Predicted GTPase [General function prediction only	97.68
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.67
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	97.67
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.67
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.66
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.65
PRK12317	425	elongation factor 1-alpha; Reviewed	97.65
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.62
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	97.62
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	97.61
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.61
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.61
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.61
PRK09601	364	GTP-binding protein YchF; Reviewed	97.61
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.6
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.6
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.59
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.59
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	97.59
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.58
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.57
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	97.57
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.57
PRK12740	668	elongation factor G; Reviewed	97.56
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.56
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	97.56
COG1163	365	DRG Predicted GTPase [General function prediction	97.55
PRK13351	687	elongation factor G; Reviewed	97.54
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.54
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.52
PRK00007	693	elongation factor G; Reviewed	97.52
KOG2486	320	consensus Predicted GTPase [General function predi	97.52
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.5
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	97.5
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.49
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.49
PRK15467	158	ethanolamine utilization protein EutP; Provisional	97.47
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.47
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.46
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.46
KOG0394	210	consensus Ras-related GTPase [General function pre	97.46
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.45
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.44
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.43
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.42
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.42
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	97.41
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	97.39
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	97.39
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.39
CHL00071	409	tufA elongation factor Tu	97.39
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.38
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.38
PRK09866	741	hypothetical protein; Provisional	97.36
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	97.36
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.35
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.34
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	97.33
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	97.32
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.32
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.31
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.31
KOG0090	238	consensus Signal recognition particle receptor, be	97.31
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	97.3
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.29
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	97.26
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.25
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.24
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.24
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.23
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	97.22
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	97.22
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.19
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	97.19
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.19
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.16
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.16
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.15
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.15
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.15
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.15
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	97.14
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.14
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	97.14
PRK05306	787	infB translation initiation factor IF-2; Validated	97.13
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	97.13
KOG2486	320	consensus Predicted GTPase [General function predi	97.12
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.12
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	97.11
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.11
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.1
PTZ00133	182	ADP-ribosylation factor; Provisional	97.09
PRK12735	396	elongation factor Tu; Reviewed	97.07
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.07
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.07
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	97.04
CHL00189	742	infB translation initiation factor 2; Provisional	97.04
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.01
PRK07560	731	elongation factor EF-2; Reviewed	97.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.0
PLN03110	216	Rab GTPase; Provisional	96.99
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	96.97
PTZ00416	836	elongation factor 2; Provisional	96.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	96.94
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.94
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	96.93
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.9
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	96.9
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	96.89
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	96.89
PLN00223	181	ADP-ribosylation factor; Provisional	96.89
PLN03108	210	Rab family protein; Provisional	96.88
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.86
PRK14738	206	gmk guanylate kinase; Provisional	96.85
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	96.84
PLN03127	447	Elongation factor Tu; Provisional	96.82
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.82
PRK14737	186	gmk guanylate kinase; Provisional	96.82
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	96.82
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	96.79
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.78
PTZ00369	189	Ras-like protein; Provisional	96.78
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.77
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	96.77
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	96.7
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	96.69
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.68
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.68
PRK00049	396	elongation factor Tu; Reviewed	96.67
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.63
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.62
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.61
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	96.6
COG1100	219	GTPase SAR1 and related small G proteins [General	96.59
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.59
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	96.54
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	96.54
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	96.53
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	96.46
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	96.45
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.45
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	96.45
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	96.41
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.41
PRK12739	691	elongation factor G; Reviewed	96.4
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	96.4
KOG0466	466	consensus Translation initiation factor 2, gamma s	96.38
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.35
PLN03126	478	Elongation factor Tu; Provisional	96.35
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.32
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.31
PRK00007	693	elongation factor G; Reviewed	96.3
PRK12736	394	elongation factor Tu; Reviewed	96.29
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	96.28
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.25
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.24
PRK04004	586	translation initiation factor IF-2; Validated	96.23
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.18
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.18
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	96.14
KOG0460	449	consensus Mitochondrial translation elongation fac	96.14
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	96.1
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	96.1
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.07
PLN02772	398	guanylate kinase	96.03
PRK09602	396	translation-associated GTPase; Reviewed	96.03
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.02
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	95.97
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	95.97
PRK07261	171	topology modulation protein; Provisional	95.95
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	95.94
PRK00300	205	gmk guanylate kinase; Provisional	95.93
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	95.93
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	95.92
COG3911	183	Predicted ATPase [General function prediction only	95.91
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	95.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	95.87
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	95.84
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	95.84
KOG0395	196	consensus Ras-related GTPase [General function pre	95.81
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.81
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.81

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=100.00  E-value=2.2e-34  Score=260.94  Aligned_cols=171  Identities=44%  Similarity=0.750  Sum_probs=151.2

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v  179 (275)
                      ++||||||.+.++++++.++++|+||+|+|+|.|.+..+..+.+++.++|+|+|+||+|+.+..+..+|.+++.+.+..+
T Consensus         1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v   80 (276)
T TIGR03596         1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA   80 (276)
T ss_pred             CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence            58999999999999999999999999999999999999988888888899999999999987766677888886666778


Q ss_pred             EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +++|++++.|+++|.+.+.+++++.......++......+++++|+||||||||||+|.+++.+.+++.||+||+.++++
T Consensus        81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~  160 (276)
T TIGR03596        81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK  160 (276)
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence            99999999999999999888876554444444555667899999999999999999999999999999999999999998


Q ss_pred             E---EEeecccccc
Q 023932          260 Q---FFLLKYHQKC  270 (275)
Q Consensus       260 ~---~~~~~~~~~~  270 (275)
                      .   +.+.++||+.
T Consensus       161 ~~~~~~l~DtPG~~  174 (276)
T TIGR03596       161 LSDGLELLDTPGIL  174 (276)
T ss_pred             eCCCEEEEECCCcc
Confidence            4   6899999984

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=100.00  E-value=2.4e-34  Score=262.13  Aligned_cols=173  Identities=44%  Similarity=0.781  Sum_probs=152.3

Q ss_pred             cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCe
Q 023932           99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK  178 (275)
Q Consensus        99 ~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~  178 (275)
                      .++||||||.+.++++++.++++|+||+|+|+|.|.+..+..+.+++.++|+++|+||+|+.+....++|.+++.+.+..
T Consensus         3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~   82 (287)
T PRK09563          3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK   82 (287)
T ss_pred             cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence            48999999999999999999999999999999999999888888888889999999999998776667888888666677


Q ss_pred             eEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       179 vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      ++++|++++.|+++|.+.+.++.++...+...++......+++++|+||||||||||+|++++.+.+++.||+||+.+++
T Consensus        83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~  162 (287)
T PRK09563         83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI  162 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence            89999999999999999888887654443444445566789999999999999999999999989999999999999999


Q ss_pred             E---EEEeeccccccc
Q 023932          259 S---QFFLLKYHQKCK  271 (275)
Q Consensus       259 ~---~~~~~~~~~~~~  271 (275)
                      .   ...+.++||...
T Consensus       163 ~~~~~~~l~DtPGi~~  178 (287)
T PRK09563        163 KLGKGLELLDTPGILW  178 (287)
T ss_pred             EeCCcEEEEECCCcCC
Confidence            8   378999999854

>COG1161 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=4.7e-33  Score=257.23  Aligned_cols=179  Identities=37%  Similarity=0.690  Sum_probs=158.7

Q ss_pred             CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932           96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ  175 (275)
Q Consensus        96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~  175 (275)
                      .-..++||||||.++++++.+.+..+|+|++|+|+|+|.++.++.+.+++.+++.++|+||+||++....++|.+++.++
T Consensus        10 ~~~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~   89 (322)
T COG1161          10 HYNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKE   89 (322)
T ss_pred             hcccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             -CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          176 -GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       176 -g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                       +...++++++.+.+...+...+..+....-.....++......++++||+||||||||||+|++++.+.||+.||+|++
T Consensus        90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~  169 (322)
T COG1161          90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKG  169 (322)
T ss_pred             CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecc
Confidence             5778899999999998888666555433333344555556678999999999999999999999999999999999999


Q ss_pred             ceEEE---EEEeecccccccccC
Q 023932          255 LKYVS---QFFLLKYHQKCKVTQ  274 (275)
Q Consensus       255 ~~~v~---~~~~~~~~~~~~~~~  274 (275)
                      .||++   ..+++++||+|.-++
T Consensus       170 ~q~i~~~~~i~LlDtPGii~~~~  192 (322)
T COG1161         170 IQWIKLDDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             eEEEEcCCCeEEecCCCcCCCCc
Confidence            99999   479999999998664

>cd01856 YlqF YlqF

Probab=99.97  E-value=3.1e-30  Score=217.75  Aligned_cols=167  Identities=47%  Similarity=0.860  Sum_probs=138.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEE
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF  181 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~  181 (275)
                      ||||||++.++++++.++++|+|++|+|++.+....+..+...+.++|+++|+||+|+.+.....+|.+++...+..+++
T Consensus         1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~   80 (171)
T cd01856           1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF   80 (171)
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence            89999999999999999999999999999998877777777777789999999999998765555677777665667899


Q ss_pred             ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--
Q 023932          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS--  259 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~--  259 (275)
                      +||+++.|+++|.+.+.+..+... +.......+...+++++|.||||||||+|+|.+...+.+++.||||++.+++.  
T Consensus        81 iSa~~~~gi~~L~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~  159 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKLLKDIE-KLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS  159 (171)
T ss_pred             EECCCcccHHHHHHHHHHHHHHHh-hhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence            999999999999998887654322 11222334556799999999999999999999988889999999999999876  


Q ss_pred             -EEEeeccccc
Q 023932          260 -QFFLLKYHQK  269 (275)
Q Consensus       260 -~~~~~~~~~~  269 (275)
                       .+.+.+++|+
T Consensus       160 ~~~~~iDtpG~  170 (171)
T cd01856         160 PGIYLLDTPGI  170 (171)
T ss_pred             CCEEEEECCCC
Confidence             3456676664

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.97  E-value=6.6e-30  Score=240.17  Aligned_cols=213  Identities=19%  Similarity=0.193  Sum_probs=160.2

Q ss_pred             CeeeEecCCCCCCCCCCCCCC-------------CCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHH
Q 023932           50 PIIQTVGGKQSSWHGGNSNNS-------------NGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKD  116 (275)
Q Consensus        50 ~~~~~vg~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~  116 (275)
                      |+|.|||.  |+.+|+++=|+             |....-.....+|....  +..-|+..-....--+.+....+|+..
T Consensus         4 ~~VAIVGR--PNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGR--PNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECC--CCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHH
Confidence            78999998  44467776544             33444445666777666  444444442222222455677888999


Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchhhH
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKL  193 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L  193 (275)
                      .+++||+||||||++.+++..|..+.++|.  ++|+++|+||+|....+   .....|.++|+ +++++||.+|.|+.+|
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPISAEHGRGIGDL  156 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---hhHHHHHhcCCCCceEeehhhccCHHHH
Confidence            999999999999999999999999999987  68999999999987332   23344556774 7999999999999999


Q ss_pred             HHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932          194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT  273 (275)
Q Consensus       194 ~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~  273 (275)
                      .+.+.+.++ ........+ ...++|++|+|+||||||||+|+|++++++.|++.||||||.  +...|..+.+.++++|
T Consensus       157 ld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~--I~~~~e~~~~~~~liD  232 (444)
T COG1160         157 LDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS--IDIEFERDGRKYVLID  232 (444)
T ss_pred             HHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc--eeeeEEECCeEEEEEE
Confidence            998888764 221111111 136899999999999999999999999999999999999999  5556667777777665

>cd01858 NGP_1 NGP-1

Probab=99.96  E-value=3.1e-28  Score=202.53  Aligned_cols=148  Identities=30%  Similarity=0.527  Sum_probs=123.7

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcccc
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM  188 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~g~  188 (275)
                      ++..++++|+|++|+|+++|....+..+.+++.    ++|+++|+||+|+.+..+...|...+.+.. ..++++||+++.
T Consensus         2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence            566889999999999999998888888888775    389999999999998777777888776543 235789999999


Q ss_pred             chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEeec
Q 023932          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLLK  265 (275)
Q Consensus       189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~~  265 (275)
                      |+++|.+.+.++.....        .....+++++|+||||||||||+|++.+++.++++||+||+.+++.   .+++.+
T Consensus        82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD  153 (157)
T cd01858          82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID  153 (157)
T ss_pred             cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence            99999999887654210        1235689999999999999999999999999999999999999988   478888


Q ss_pred             cccc
Q 023932          266 YHQK  269 (275)
Q Consensus       266 ~~~~  269 (275)
                      +||.
T Consensus       154 tPGi  157 (157)
T cd01858         154 CPGV  157 (157)
T ss_pred             CcCC
Confidence            8874

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2484 consensus GTPase [General function prediction only]

Probab=99.95  E-value=3.4e-28  Score=224.09  Aligned_cols=180  Identities=32%  Similarity=0.449  Sum_probs=144.6

Q ss_pred             CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHH
Q 023932           96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATY  171 (275)
Q Consensus        96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~  171 (275)
                      ......|++++.....++++++++.+|+||+|+|||+|+++.+.++++++.    ++..|+|+||+||++.+.+++|+.|
T Consensus       122 ~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~Y  201 (435)
T KOG2484|consen  122 EYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVY  201 (435)
T ss_pred             HhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHH
Confidence            444567888998999999999999999999999999999999999999873    6999999999999999999999999


Q ss_pred             HHHcCCeeEEecCccccchh--hHH--HH-HHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932          172 FAKQGTKVIFSNGQLGMGTM--KLS--RL-AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA  246 (275)
Q Consensus       172 ~~~~g~~vi~iSak~g~Gi~--~L~--~~-i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs  246 (275)
                      +++++..++|.++....+..  .+.  .. -.+.+-..-..|...+.....++++|||+|||||||+||+|..++.|.|+
T Consensus       202 Lr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg  281 (435)
T KOG2484|consen  202 LRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG  281 (435)
T ss_pred             HHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC
Confidence            99999888777655444331  111  00 01111111122333444567899999999999999999999999999999


Q ss_pred             CCCcccccceEEE---EEEeecccccccccCC
Q 023932          247 PRPGVTRVLKYVS---QFFLLKYHQKCKVTQD  275 (275)
Q Consensus       247 ~~pGtTr~~~~v~---~~~~~~~~~~~~~~~~  275 (275)
                      +.||+||.+|++.   ..=+++.||+|+.-+|
T Consensus       282 ~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~  313 (435)
T KOG2484|consen  282 NVPGVTRSMQEVKLDKKIRLLDSPGIVPPSID  313 (435)
T ss_pred             CCccchhhhhheeccCCceeccCCceeecCCC
Confidence            9999999999999   4678899999986543

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=99.95  E-value=1.7e-28  Score=232.02  Aligned_cols=202  Identities=24%  Similarity=0.374  Sum_probs=152.9

Q ss_pred             CCCCCCCcchhhHHhhcccccCccEEEEeCCCcccccc------c-hhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 023932           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWY------P-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH  138 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~------p-G~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d  138 (275)
                      .+++++.|...++.+++-.....-|+.|++.+...++-      | .+...+|+|++.+++.+|+|+.|||||+|+...+
T Consensus       113 ~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~  192 (562)
T KOG1424|consen  113 DIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRS  192 (562)
T ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCC
Confidence            45678888888888888887777788888776655522      2 3446899999999999999999999999999999


Q ss_pred             HHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcc------ccchhhHHHHHH---HHhc---
Q 023932          139 PLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL------GMGTMKLSRLAK---ALAS---  202 (275)
Q Consensus       139 ~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~------g~Gi~~L~~~i~---~l~~---  202 (275)
                      +.+..|..    .|..+|++||+||++...+.+|.+||.+.++.+++.||..      +.++.+-.+...   ....   
T Consensus       193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~  272 (562)
T KOG1424|consen  193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF  272 (562)
T ss_pred             hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence            99999987    4678999999999999999999999999899999999865      111111111000   0000   


Q ss_pred             ----------------hhhh------------hhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          203 ----------------DVNV------------KRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       203 ----------------~~~~------------~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                                      ++..            ........+ .+.|++||||||||||+||+|.+.+++.||..||.||+
T Consensus       273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~-~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH  351 (562)
T KOG1424|consen  273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKD-VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH  351 (562)
T ss_pred             cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCc-eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce
Confidence                            0000            000001112 48999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeeccccccc
Q 023932          255 LKYVSQFFLLKYHQKCK  271 (275)
Q Consensus       255 ~~~v~~~~~~~~~~~~~  271 (275)
                      .|   ++|+.+....|+
T Consensus       352 FQ---Ti~ls~~v~LCD  365 (562)
T KOG1424|consen  352 FQ---TIFLSPSVCLCD  365 (562)
T ss_pred             eE---EEEcCCCceecC
Confidence            98   566777766665

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=99.95  E-value=3.9e-27  Score=211.69  Aligned_cols=171  Identities=32%  Similarity=0.516  Sum_probs=137.1

Q ss_pred             CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932           96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ  175 (275)
Q Consensus        96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~  175 (275)
                      .-.+++||||||+++.+++++.+...|+||+|.|||.|+++.++.+.+++..++.|||+||+||++..+....++++..+
T Consensus        22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~  101 (335)
T KOG2485|consen   22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQ  101 (335)
T ss_pred             cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhh
Confidence            34578999999999999999999999999999999999999999999999999999999999999977777778888765


Q ss_pred             C-CeeEEecCccccc--hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHh-----cCCccccCC
Q 023932          176 G-TKVIFSNGQLGMG--TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAP  247 (275)
Q Consensus       176 g-~~vi~iSak~g~G--i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll-----~~~~~~vs~  247 (275)
                      + ..++..++.....  +..+...+..+..+....-   +..+....++|+|.||||||||||++.     +++.+.|+.
T Consensus       102 ~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~  178 (335)
T KOG2485|consen  102 NLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGA  178 (335)
T ss_pred             cccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccC
Confidence            4 3455556554444  6666665555444332111   113456789999999999999999986     457789999


Q ss_pred             CCcccccceE-EE-----EEEeeccccc
Q 023932          248 RPGVTRVLKY-VS-----QFFLLKYHQK  269 (275)
Q Consensus       248 ~pGtTr~~~~-v~-----~~~~~~~~~~  269 (275)
                      .||+||.+.. ++     ..+.++++|.
T Consensus       179 ~pGVT~~V~~~iri~~rp~vy~iDTPGi  206 (335)
T KOG2485|consen  179 EPGVTRRVSERIRISHRPPVYLIDTPGI  206 (335)
T ss_pred             CCCceeeehhheEeccCCceEEecCCCc
Confidence            9999999988 44     4788888885

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.94  E-value=1.9e-25  Score=185.53  Aligned_cols=148  Identities=31%  Similarity=0.432  Sum_probs=116.7

Q ss_pred             CeEEEEEeCCCCCCCCcHHHH-HHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCccccchhhHHHHH
Q 023932          122 DVVIEVRDARIPLSTTHPLMD-QWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d~~l~-~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~g~Gi~~L~~~i  197 (275)
                      |++|+|+|+++|.+..+..+. .++.  ++|+++|+||+|+.+..+..+|+..+.+. +..++++||+++.|+++|.+.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i   80 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF   80 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence            789999999999888877776 3443  78999999999998877666777666543 4578999999999999999887


Q ss_pred             HHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE---EEeeccccc
Q 023932          198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ---FFLLKYHQK  269 (275)
Q Consensus       198 ~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~---~~~~~~~~~  269 (275)
                      .+...+....+..+.......+++++|.||||||||||+|++...+.+++.||||++.+++..   +.+.++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            654332222222233344578999999999999999999999988999999999999998873   467777663

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.93  E-value=2.1e-25  Score=182.57  Aligned_cols=132  Identities=33%  Similarity=0.570  Sum_probs=117.3

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcc
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      |+++++.++++|+|++|+|+++|.+..+..+.+++.    ++|+++|+||+|+.++.+..+|.+++.+.+..++++||++
T Consensus         2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence            577889999999999999999999888888888874    7899999999999887777778888877788899999987


Q ss_pred             ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEe
Q 023932          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFL  263 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~  263 (275)
                      +.+                             +++++|.||||||||||+|++...+.++..||+||+.+++.   ...+
T Consensus        82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  132 (141)
T cd01857          82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL  132 (141)
T ss_pred             CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence            754                             48999999999999999999999889999999999999988   5789


Q ss_pred             eccccccc
Q 023932          264 LKYHQKCK  271 (275)
Q Consensus       264 ~~~~~~~~  271 (275)
                      .+++|++.
T Consensus       133 ~DtpG~~~  140 (141)
T cd01857         133 CDCPGLVF  140 (141)
T ss_pred             EECCCcCC
Confidence            99998863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.93  E-value=7.5e-25  Score=185.64  Aligned_cols=140  Identities=35%  Similarity=0.577  Sum_probs=106.4

Q ss_pred             CeEEEEEeCCCCCCCCcHHHHHH--h--cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc----------
Q 023932          122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG----------  187 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d~~l~~~--L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g----------  187 (275)
                      |+|++|+|+|.|++..++.+.++  +  .++|+|+|+||+|+++...+.+|.+++.+....+.+.|+...          
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV   80 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence            79999999999999999998888  3  378999999999999988888999999776544444443321          


Q ss_pred             ---------------cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          188 ---------------MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       188 ---------------~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                                     .|.++|.+.++++.        .++.....++++++|+||||||||||+|++++.+.+++.||+|
T Consensus        81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T  152 (172)
T cd04178          81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT  152 (172)
T ss_pred             ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence                           12222222222221        1122345689999999999999999999999999999999999


Q ss_pred             ccceEEEE---EEeeccccc
Q 023932          253 RVLKYVSQ---FFLLKYHQK  269 (275)
Q Consensus       253 r~~~~v~~---~~~~~~~~~  269 (275)
                      ++.+++..   +.+.++||+
T Consensus       153 ~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         153 KSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             cceEEEEeCCCEEEEECcCC
Confidence            99999884   567777763

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=99.91  E-value=1.9e-23  Score=173.20  Aligned_cols=149  Identities=34%  Similarity=0.499  Sum_probs=117.2

Q ss_pred             HHHHHH-HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932          111 EKELKD-QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       111 ~k~l~~-~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      |+++.+ .++++|++|+|+|++++....+..+..++.  ++|+++|+||+|+.+......+..+....+..++++||+++
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~   81 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER   81 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence            444444 456699999999999987777777766553  78999999999998665544554333344567899999999


Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEee
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLL  264 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~  264 (275)
                      .|+++|.+.+.++.+..          +...+++++|.||||||||+|+|.+.....+++.+|+|++.+.+.   .+.+.
T Consensus        82 ~gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~  151 (156)
T cd01859          82 LGTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLL  151 (156)
T ss_pred             ccHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEE
Confidence            99999999988776531          235688999999999999999999888889999999999988765   35677


Q ss_pred             ccccc
Q 023932          265 KYHQK  269 (275)
Q Consensus       265 ~~~~~  269 (275)
                      +++|+
T Consensus       152 DtpGi  156 (156)
T cd01859         152 DTPGV  156 (156)
T ss_pred             ECcCC
Confidence            77763

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.91  E-value=4.6e-24  Score=182.63  Aligned_cols=147  Identities=29%  Similarity=0.297  Sum_probs=111.9

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHH----HHHHHH--HHHHcC---CeeE
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWAT--YFAKQG---TKVI  180 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~----~~~~~~--~~~~~g---~~vi  180 (275)
                      +...+.++++++|+|++|+|++++....+..+.....++|+++|+||+|+.+...    ...|..  .+...+   ..++
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI  103 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence            4566677889999999999999887666666644445789999999999975432    222321  112223   2589


Q ss_pred             EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC--------ccccCCCCccc
Q 023932          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT  252 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~--------~~~vs~~pGtT  252 (275)
                      ++||++|.|+++|.+.|.+..+.             ..+++++|.||||||||||+|++..        .+.+|+.||||
T Consensus       104 ~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT  170 (190)
T cd01855         104 LISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT  170 (190)
T ss_pred             EEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence            99999999999999988776541             3479999999999999999999753        36789999999


Q ss_pred             ccceEEEE---EEeeccccc
Q 023932          253 RVLKYVSQ---FFLLKYHQK  269 (275)
Q Consensus       253 r~~~~v~~---~~~~~~~~~  269 (275)
                      ++.+.+..   +.+.++||+
T Consensus       171 ~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         171 LDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             eeeEEEecCCCCEEEeCcCC
Confidence            99998863   467777764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=99.89  E-value=4.3e-23  Score=190.14  Aligned_cols=161  Identities=30%  Similarity=0.513  Sum_probs=135.6

Q ss_pred             chhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (275)
Q Consensus       104 pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v  179 (275)
                      -|...++|.++.+++..+|+||.|+|||+|....+..++++|+    .+..|+|+||+||++......|+..+.+..-.+
T Consensus       197 kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi  276 (572)
T KOG2423|consen  197 KGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI  276 (572)
T ss_pred             ccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce
Confidence            3777899999999999999999999999999999999999997    467999999999999998899999987764333


Q ss_pred             EE-ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          180 IF-SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       180 i~-iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      -| .|-.+..|-..|.+++..+..-..        ....+-|+|||||||||||+||+|.+++.|.|+|+||-|+-+|.|
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI  348 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI  348 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH
Confidence            33 344566777788888777764321        123578999999999999999999999999999999999999987


Q ss_pred             E---EEEeecccccccc
Q 023932          259 S---QFFLLKYHQKCKV  272 (275)
Q Consensus       259 ~---~~~~~~~~~~~~~  272 (275)
                      .   -+||.+-+|.+--
T Consensus       349 tLmkrIfLIDcPGvVyp  365 (572)
T KOG2423|consen  349 TLMKRIFLIDCPGVVYP  365 (572)
T ss_pred             HHHhceeEecCCCccCC
Confidence            6   5799999887643

>PRK12289 GTPase RsgA; Reviewed

Probab=99.89  E-value=1.3e-22  Score=189.33  Aligned_cols=137  Identities=22%  Similarity=0.265  Sum_probs=114.4

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      .++++|.|++|+|+.++... ...+.+++.     ++|++||+||+||++..+.+.|.+.+...|+.++++||+++.|++
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~  164 (352)
T PRK12289         86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE  164 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            57999999999999875422 234455543     789999999999998776778888887888999999999999999


Q ss_pred             hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEEE---E
Q 023932          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVSQ---F  261 (275)
Q Consensus       192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~~---~  261 (275)
                      +|.+.+..                  ..++|+|.||||||||||+|++...+.|+++||       |||+.+++..   .
T Consensus       165 eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~  226 (352)
T PRK12289        165 ALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG  226 (352)
T ss_pred             HHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc
Confidence            88776532                  136999999999999999999999999999999       9999999863   6


Q ss_pred             Eeecccccccc
Q 023932          262 FLLKYHQKCKV  272 (275)
Q Consensus       262 ~~~~~~~~~~~  272 (275)
                      ++.++||+-.+
T Consensus       227 ~liDTPG~~~~  237 (352)
T PRK12289        227 LLADTPGFNQP  237 (352)
T ss_pred             EEEeCCCcccc
Confidence            89999998654

>PRK13796 GTPase YqeH; Provisional

Probab=99.89  E-value=3.1e-22  Score=188.17  Aligned_cols=145  Identities=26%  Similarity=0.311  Sum_probs=115.4

Q ss_pred             HHHHHHHhhcC-eEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCH----HHHHHHHHHHH-HcCC---eeEEe
Q 023932          112 KELKDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIFS  182 (275)
Q Consensus       112 k~l~~~l~~aD-lVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~-~~g~---~vi~i  182 (275)
                      +++.+.+...| +|++|+|+.+...+....+.++..++|+++|+||+||.+.    ....+|...+. +.++   .++++
T Consensus        60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v  139 (365)
T PRK13796         60 LKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI  139 (365)
T ss_pred             HHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence            33555556555 9999999999888888888888778999999999999753    23445655443 3454   68999


Q ss_pred             cCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCcccccceE
Q 023932          183 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~~~~  257 (275)
                      ||+++.|+++|.+.+.+...              ..++++||+||||||||||+|++.     +.+.+|+.||||++.++
T Consensus       140 SAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~  205 (365)
T PRK13796        140 SAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE  205 (365)
T ss_pred             ECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE
Confidence            99999999999888866532              236899999999999999999854     35679999999999999


Q ss_pred             EEE---EEeecccccc
Q 023932          258 VSQ---FFLLKYHQKC  270 (275)
Q Consensus       258 v~~---~~~~~~~~~~  270 (275)
                      +..   .++.++||+.
T Consensus       206 ~~l~~~~~l~DTPGi~  221 (365)
T PRK13796        206 IPLDDGSFLYDTPGII  221 (365)
T ss_pred             EEcCCCcEEEECCCcc
Confidence            873   6899999985

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.88  E-value=4.8e-22  Score=186.63  Aligned_cols=150  Identities=24%  Similarity=0.276  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH----HHHHHHH-HHHHcCC---eeE
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KVI  180 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~----~~~~~~~-~~~~~g~---~vi  180 (275)
                      .+.+.+..+...+++|++|+|+.+...+....+.+++.++|+++|+||+|++++.    ...+|+. ++++.++   .++
T Consensus        52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~  131 (360)
T TIGR03597        52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDII  131 (360)
T ss_pred             HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEE
Confidence            4555555666889999999999998888888888888889999999999997542    3344543 3444554   588


Q ss_pred             EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC-----ccccCCCCcccccc
Q 023932          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVL  255 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~-----~~~vs~~pGtTr~~  255 (275)
                      ++||++|.|+++|.+.+.++..              ..++++||.||||||||||+|++..     .+.+|+.||||++.
T Consensus       132 ~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~  197 (360)
T TIGR03597       132 LVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL  197 (360)
T ss_pred             EecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE
Confidence            9999999999999988766522              2479999999999999999999753     47899999999999


Q ss_pred             eEEEE---EEeecccccccc
Q 023932          256 KYVSQ---FFLLKYHQKCKV  272 (275)
Q Consensus       256 ~~v~~---~~~~~~~~~~~~  272 (275)
                      +.+..   +++.++||+..-
T Consensus       198 ~~~~~~~~~~l~DtPG~~~~  217 (360)
T TIGR03597       198 IEIPLDDGHSLYDTPGIINS  217 (360)
T ss_pred             EEEEeCCCCEEEECCCCCCh
Confidence            98884   579999998643

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.87  E-value=6.8e-22  Score=176.43  Aligned_cols=138  Identities=20%  Similarity=0.215  Sum_probs=111.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHH-HHHHHHHHHcCCeeEEecCccccch
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~-~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      +++++|.+++|+|+++|..+.+ .+.+|+.     +.+++||+||+||.+..+. .++.+.+.+.++.++.+||++|.|+
T Consensus        33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi  111 (245)
T TIGR00157        33 IVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL  111 (245)
T ss_pred             ccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence            6799999999999998765443 3455542     7899999999999754333 3566777777889999999999999


Q ss_pred             hhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--EE
Q 023932          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS--QF  261 (275)
Q Consensus       191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~--~~  261 (275)
                      ++|.+.+..                  ..++|+|.||||||||||+|++.....++++++       |||+.+++.  ..
T Consensus       112 ~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~  173 (245)
T TIGR00157       112 KELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG  173 (245)
T ss_pred             HHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc
Confidence            988876432                  147899999999999999999988888888874       999999987  46


Q ss_pred             Eeeccccccccc
Q 023932          262 FLLKYHQKCKVT  273 (275)
Q Consensus       262 ~~~~~~~~~~~~  273 (275)
                      ++.++||+..++
T Consensus       174 ~liDtPG~~~~~  185 (245)
T TIGR00157       174 LIADTPGFNEFG  185 (245)
T ss_pred             EEEeCCCccccC
Confidence            899999987654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=3.1e-21  Score=187.07  Aligned_cols=201  Identities=20%  Similarity=0.115  Sum_probs=132.9

Q ss_pred             CCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc------------CccEEEEeCCCccccccchhHHHHHHHH
Q 023932           47 SSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL------------DADLYYWTKSLRPVQWYPGHIAKTEKEL  114 (275)
Q Consensus        47 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~d~~~~~~~~~~i~~~pG~~~~~~k~l  114 (275)
                      ...|.|.+||...  .+|+++-++..-.... ........            ...+..||+.... ....+....+..++
T Consensus        36 ~~~~~V~IvG~~n--vGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~-~~~~~~~~~~~~~~  111 (472)
T PRK03003         36 GPLPVVAVVGRPN--VGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE-PDAKGLQASVAEQA  111 (472)
T ss_pred             CCCCEEEEEcCCC--CCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC-CcchhHHHHHHHHH
Confidence            3458899999832  3477766544322110 00011111            1234556543311 11111223455667


Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchh
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTM  191 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~  191 (275)
                      ..+++.+|+||+|+|++++.+..+..+..++.  ++|+++|+||+|+.....  +..+ +...+. .++++||++|.|++
T Consensus       112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~-~~~~g~~~~~~iSA~~g~gi~  188 (472)
T PRK03003        112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA-LWSLGLGEPHPVSALHGRGVG  188 (472)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH-HHhcCCCCeEEEEcCCCCCcH
Confidence            77889999999999999887776777777765  789999999999864321  1112 223343 46899999999999


Q ss_pred             hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      +|.+.+.+...+...   .....+...+++|+|.||||||||+|+|++..+..+++.||||+|...
T Consensus       189 eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~  251 (472)
T PRK03003        189 DLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD  251 (472)
T ss_pred             HHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce
Confidence            999887765543111   111123468999999999999999999999988889999999999853

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=7e-21  Score=181.95  Aligned_cols=156  Identities=23%  Similarity=0.272  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEec
Q 023932          107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSN  183 (275)
Q Consensus       107 ~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iS  183 (275)
                      .....+++...++.+|+|++|+|++.+.+..+..+.+++.  ++|+++|+||+|+......  . ..+.+.+. +++++|
T Consensus        65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~-~~~~~lg~~~~~~vS  141 (429)
T TIGR03594        65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--A-AEFYSLGFGEPIPIS  141 (429)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--H-HHHHhcCCCCeEEEe
Confidence            3556677888899999999999999988888888888876  7899999999998754321  1 22445565 799999


Q ss_pred             CccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE----
Q 023932          184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS----  259 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~----  259 (275)
                      |++|.|+++|.+.+.+.......   ........++++++|.||||||||+|+|++.++..+++.||||++.....    
T Consensus       142 a~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~  218 (429)
T TIGR03594       142 AEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN  218 (429)
T ss_pred             CCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC
Confidence            99999999999888766543211   11112346899999999999999999999999899999999999985443    


Q ss_pred             --EEEeecccc
Q 023932          260 --QFFLLKYHQ  268 (275)
Q Consensus       260 --~~~~~~~~~  268 (275)
                        .+.+.+++|
T Consensus       219 ~~~~~liDT~G  229 (429)
T TIGR03594       219 GKKYLLIDTAG  229 (429)
T ss_pred             CcEEEEEECCC
Confidence              244555555

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=8.2e-21  Score=181.93  Aligned_cols=174  Identities=21%  Similarity=0.184  Sum_probs=123.4

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR  165 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~  165 (275)
                      ..+..||+..... .-.+......++....+..+|++|+|+|++.+.+..+..+..++.  ++|+++|+||+|+..... 
T Consensus        49 ~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~-  126 (435)
T PRK00093         49 REFILIDTGGIEP-DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA-  126 (435)
T ss_pred             cEEEEEECCCCCC-cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh-
Confidence            4566676543211 001122335556677889999999999999988877777777776  789999999999765221 


Q ss_pred             HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932          166 NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP  244 (275)
Q Consensus       166 ~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~  244 (275)
                       .. ..+.+.+. +++++||++|.|+++|.+.+..........    ......++++++|.||||||||+|+|++..++.
T Consensus       127 -~~-~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~----~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~  200 (435)
T PRK00093        127 -DA-YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEE----DEEDEPIKIAIIGRPNVGKSSLINALLGEERVI  200 (435)
T ss_pred             -hH-HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccc----cccccceEEEEECCCCCCHHHHHHHHhCCCcee
Confidence             22 22334554 489999999999999988876633221110    112347899999999999999999999999999


Q ss_pred             cCCCCcccccceEEE------EEEeeccccc
Q 023932          245 AAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       245 vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +++.||||++.....      .+.+.+++|.
T Consensus       201 ~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~  231 (435)
T PRK00093        201 VSDIAGTTRDSIDTPFERDGQKYTLIDTAGI  231 (435)
T ss_pred             ecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence            999999999986443      2455566653

>PRK12288 GTPase RsgA; Reviewed

Probab=99.83  E-value=5.6e-20  Score=171.57  Aligned_cols=137  Identities=22%  Similarity=0.213  Sum_probs=108.1

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHH---HHHHHHHHHHHcCCeeEEecCcccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~---~~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      .++++|.+++|.+....++.  ..+.+|+.     ++|.+||+||+||.+..   ...++...+.+.++.++.+||+++.
T Consensus       117 iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            46899999988886432222  24455542     68999999999998654   2455666676778899999999999


Q ss_pred             chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEEE-
Q 023932          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVSQ-  260 (275)
Q Consensus       189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~~-  260 (275)
                      |+++|.+.+...                  .++|+|.||||||||||+|+++..+.|+++++       ||++.+++.. 
T Consensus       195 GideL~~~L~~k------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~  256 (347)
T PRK12288        195 GLEELEAALTGR------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP  256 (347)
T ss_pred             CHHHHHHHHhhC------------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence            999998876421                  26899999999999999999999999999996       8999988873 


Q ss_pred             --EEeeccccccccc
Q 023932          261 --FFLLKYHQKCKVT  273 (275)
Q Consensus       261 --~~~~~~~~~~~~~  273 (275)
                        .+++++||+-.+.
T Consensus       257 ~~~~liDTPGir~~~  271 (347)
T PRK12288        257 HGGDLIDSPGVREFG  271 (347)
T ss_pred             CCCEEEECCCCCccc
Confidence              4789999987653

>PRK00098 GTPase RsgA; Reviewed

Probab=99.82  E-value=9.3e-20  Score=167.05  Aligned_cols=138  Identities=22%  Similarity=0.242  Sum_probs=109.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCc-CHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      ..++++|++++|+|+++|..... .+.+++     .++|+++|+||+||. ......++.+.+.+.++.++++||+++.|
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            35799999999999987644322 334443     278999999999997 34444566677767788899999999999


Q ss_pred             hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE---
Q 023932          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS---  259 (275)
Q Consensus       190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~---  259 (275)
                      +++|.+.+.                  ...++++|.||||||||||+|++.....++++++       |||+.+++.   
T Consensus       155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~  216 (298)
T PRK00098        155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG  216 (298)
T ss_pred             HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence            998877642                  1258999999999999999999998888998885       999998866   


Q ss_pred             EEEeecccccccc
Q 023932          260 QFFLLKYHQKCKV  272 (275)
Q Consensus       260 ~~~~~~~~~~~~~  272 (275)
                      ..++.++||+-.+
T Consensus       217 ~~~~~DtpG~~~~  229 (298)
T PRK00098        217 GGLLIDTPGFSSF  229 (298)
T ss_pred             CcEEEECCCcCcc
Confidence            4588999998743

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=3.1e-19  Score=180.87  Aligned_cols=204  Identities=20%  Similarity=0.150  Sum_probs=135.3

Q ss_pred             CCCCCeeeEecCCCCCCCCCCCCCCCCcchh-------------hHHhhcccccCccEEEEeCCCccccccchhHHHHHH
Q 023932           46 SSSAPIIQTVGGKQSSWHGGNSNNSNGSIEA-------------YEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEK  112 (275)
Q Consensus        46 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k  112 (275)
                      +..-+.|.|||..  +.+|+++-++......             ......|.+  ..+..||+.... ....+....+.+
T Consensus       272 ~~~~~~V~IvG~~--nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~-~~~~~~~~~~~~  346 (712)
T PRK09518        272 PKAVGVVAIVGRP--NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWE-ADVEGIDSAIAS  346 (712)
T ss_pred             cccCcEEEEECCC--CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcC-CCCccHHHHHHH
Confidence            3344678888882  2347766654432110             000112221  245566654421 111223345667


Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccc
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMG  189 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~G  189 (275)
                      ++...++.+|++|+|+|++.++...+..+.+++.  ++|+++|+||+|+.....  .. ..+...+. .++++||++|.|
T Consensus       347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSA~~g~G  423 (712)
T PRK09518        347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DA-AEFWKLGLGEPYPISAMHGRG  423 (712)
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hH-HHHHHcCCCCeEEEECCCCCC
Confidence            7778899999999999999887777777777775  789999999999865322  11 22223342 578999999999


Q ss_pred             hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      +.+|.+.|.+........ ..--......+++++|.||||||||||+|++.++..+++.||||+|....
T Consensus       424 I~eLl~~i~~~l~~~~~~-~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~  491 (712)
T PRK09518        424 VGDLLDEALDSLKVAEKT-SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE  491 (712)
T ss_pred             chHHHHHHHHhccccccc-ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee
Confidence            999988877665432110 00000123579999999999999999999999888899999999998543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.80  E-value=2.5e-19  Score=163.40  Aligned_cols=137  Identities=20%  Similarity=0.218  Sum_probs=106.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      .++++|++++|+|++.+..+ ...+.+|+     .++|+++|+||+||.+..+...+..++.+.++.++++|++++.|++
T Consensus        75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~  153 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLD  153 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHH
Confidence            57999999999999987622 22444444     2789999999999987644445555555667889999999999998


Q ss_pred             hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEEE---E
Q 023932          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVSQ---F  261 (275)
Q Consensus       192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~~---~  261 (275)
                      +|...+..                  ..++++|.+|||||||||+|++.....++.++       +||++.++++.   .
T Consensus       154 ~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~  215 (287)
T cd01854         154 ELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG  215 (287)
T ss_pred             HHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC
Confidence            88776542                  25899999999999999999988777666554       48999888873   4


Q ss_pred             Eeecccccccc
Q 023932          262 FLLKYHQKCKV  272 (275)
Q Consensus       262 ~~~~~~~~~~~  272 (275)
                      ++.++||+-.+
T Consensus       216 ~liDtPG~~~~  226 (287)
T cd01854         216 LLIDTPGFREF  226 (287)
T ss_pred             EEEECCCCCcc
Confidence            78999998554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=2.4e-17  Score=149.40  Aligned_cols=138  Identities=22%  Similarity=0.250  Sum_probs=107.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHH--HHHHHHHHcCCeeEEecCccccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~--~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      .+.+.|-+++|+-+-.|..+. ..+.++|-     +...+|++||+||++..+..  ++...+...|+.++++|++++.|
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~  154 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG  154 (301)
T ss_pred             cccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence            357788888999888775543 35566653     78899999999999776544  56667777899999999999999


Q ss_pred             hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE---
Q 023932          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS---  259 (275)
Q Consensus       190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~---  259 (275)
                      +++|.+.+..   +               ..+++|.+|||||||||+|.......|+++.       +||++...+.   
T Consensus       155 ~~~l~~~l~~---~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~  216 (301)
T COG1162         155 LEELAELLAG---K---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG  216 (301)
T ss_pred             HHHHHHHhcC---C---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC
Confidence            9888776432   1               4689999999999999999988777777777       6777777665   


Q ss_pred             EEEeeccccccccc
Q 023932          260 QFFLLKYHQKCKVT  273 (275)
Q Consensus       260 ~~~~~~~~~~~~~~  273 (275)
                      .-++.++||+-.++
T Consensus       217 gG~iiDTPGf~~~~  230 (301)
T COG1162         217 GGWIIDTPGFRSLG  230 (301)
T ss_pred             CCEEEeCCCCCccC
Confidence            34777888886653

>PRK01889 GTPase RsgA; Reviewed

Probab=99.61  E-value=2.5e-15  Score=141.02  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=95.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCccccch
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      .++++|.+++|+++..++..  ..+.++|.     +.+.+||+||+||++..+ ..++...+ ..++.++++|++++.|+
T Consensus       109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl  185 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL  185 (356)
T ss_pred             EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence            36899999999999633332  24555543     788999999999986522 22222333 44688999999999999


Q ss_pred             hhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE---E
Q 023932          191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS---Q  260 (275)
Q Consensus       191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~---~  260 (275)
                      ++|.+++..                 ..+++|+|.+|||||||+|+|++.....++.++       ++|+..+++.   .
T Consensus       186 ~~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~  248 (356)
T PRK01889        186 DVLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG  248 (356)
T ss_pred             HHHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence            988887531                 236899999999999999999987767666554       3666655544   2


Q ss_pred             EEeeccccc
Q 023932          261 FFLLKYHQK  269 (275)
Q Consensus       261 ~~~~~~~~~  269 (275)
                      .++++++++
T Consensus       249 ~~l~DtpG~  257 (356)
T PRK01889        249 GLLIDTPGM  257 (356)
T ss_pred             CeecCCCch
Confidence            466778776

>COG2262 HflX GTPases [General function prediction only]

Probab=99.47  E-value=2.1e-13  Score=127.38  Aligned_cols=154  Identities=20%  Similarity=0.225  Sum_probs=119.3

Q ss_pred             cccCCCCCeeeEecC--CCCCCCCCCCCCCCCcchhhHHhhcccccCcc----------EEEEeCCCccccccchhHHHH
Q 023932           43 SSLSSSAPIIQTVGG--KQSSWHGGNSNNSNGSIEAYEEECDWADLDAD----------LYYWTKSLRPVQWYPGHIAKT  110 (275)
Q Consensus        43 ~~~~~~~~~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------~~~~~~~~~~i~~~pG~~~~~  110 (275)
                      +...+.-|+|.+|||  +|    |+++.|+........+.+.|.++++.          -+..++++++|+.+|-++...
T Consensus       186 ~R~~~~~p~vaLvGYTNAG----KSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~A  261 (411)
T COG2262         186 KRSRSGIPLVALVGYTNAG----KSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEA  261 (411)
T ss_pred             hhcccCCCeEEEEeecccc----HHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHH
Confidence            334567789999999  67    99999999988888999999999883          234457899999999999999


Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecC
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ++.+.+.+..+|++++|||+.+|...... ...+.|.     ++|.|+|+||+|++.....   ...+.......+++||
T Consensus       262 FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA  338 (411)
T COG2262         262 FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISA  338 (411)
T ss_pred             HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEe
Confidence            99999999999999999999998322211 1122222     6799999999999866541   1222222125899999


Q ss_pred             ccccchhhHHHHHHHHhch
Q 023932          185 QLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~~  203 (275)
                      ++|.|++.|++.|.+....
T Consensus       339 ~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         339 KTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             ccCcCHHHHHHHHHHHhhh
Confidence            9999999999998877653

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.46  E-value=2.2e-13  Score=113.97  Aligned_cols=90  Identities=23%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932          166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (275)
Q Consensus       166 ~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v  245 (275)
                      +++++.|.+.|++++.+|++++.|+++|++.+..                  ..++++|.+|||||||||+|++.....+
T Consensus         2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t   63 (161)
T PF03193_consen    2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT   63 (161)
T ss_dssp             HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence            4677889899999999999999999988877542                  2579999999999999999999877777


Q ss_pred             CCCC-------cccccceEEEE---EEeeccccccccc
Q 023932          246 APRP-------GVTRVLKYVSQ---FFLLKYHQKCKVT  273 (275)
Q Consensus       246 s~~p-------GtTr~~~~v~~---~~~~~~~~~~~~~  273 (275)
                      +++.       +||++.+.+..   .++.++||+..++
T Consensus        64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFG  101 (161)
T ss_dssp             S--------------SEEEEEETTSEEEECSHHHHT--
T ss_pred             hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccc
Confidence            6666       88999998885   8999999987764

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.42  E-value=2.1e-13  Score=129.34  Aligned_cols=55  Identities=35%  Similarity=0.439  Sum_probs=46.9

Q ss_pred             CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccc
Q 023932          213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQK  269 (275)
Q Consensus       213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~  269 (275)
                      ....+++++|+|.||||||||+|+|++++++.|+++||||||+  ++.++.++.+.+
T Consensus       213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDv--iee~i~i~G~pv  267 (454)
T COG0486         213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDV--IEEDINLNGIPV  267 (454)
T ss_pred             hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccce--EEEEEEECCEEE
Confidence            4566899999999999999999999999999999999999999  455555554433

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.30  E-value=4.3e-12  Score=108.85  Aligned_cols=108  Identities=19%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C
Q 023932           70 SNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N  147 (275)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~  147 (275)
                      =|||+++++.++.|..+..+|+..|                        ++...+++|+|+|+++...|.++.+|+.  +
T Consensus        80 YGyAkv~k~~~e~w~~~i~~YL~~R------------------------~~L~~vvlliD~r~~~~~~D~em~~~l~~~~  135 (200)
T COG0218          80 YGYAKVPKEVKEKWKKLIEEYLEKR------------------------ANLKGVVLLIDARHPPKDLDREMIEFLLELG  135 (200)
T ss_pred             cccccCCHHHHHHHHHHHHHHHhhc------------------------hhheEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence            4677777777777777777777766                        6688999999999999999999999987  8


Q ss_pred             CCeEEEEEcccCcCHHHHHHHHHHHHH-cC----Ce--eEEecCccccchhhHHHHHHHHh
Q 023932          148 RKRILVLNREDMISMADRNAWATYFAK-QG----TK--VIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       148 kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g----~~--vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .|+++|+||+|+++..+..+.+....+ ..    ..  ++.+|+.++.|+++|+..|.+..
T Consensus       136 i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         136 IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence            999999999999998776555555442 11    22  78889999999999998877654

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=6.2e-12  Score=119.63  Aligned_cols=46  Identities=39%  Similarity=0.529  Sum_probs=42.4

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ  260 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~  260 (275)
                      ..++.++|+|.||||||||+|+|.++++..|||+||||||......
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v  311 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQV  311 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEe
Confidence            4568999999999999999999999999999999999999976663

>COG1159 Era GTPase [General function prediction only]

Probab=99.24  E-value=4.3e-11  Score=108.07  Aligned_cols=114  Identities=17%  Similarity=0.110  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcC--CeeEEec
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSN  183 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g--~~vi~iS  183 (275)
                      .+.+.++..+..+|+|+||+|+..+....+..+.+.+.  +.|+++++||+|+..... +.+..+++....  ..++++|
T Consensus        74 ~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          74 LMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             HHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence            35567777889999999999999998988888888776  469999999999987765 455556655433  4799999


Q ss_pred             CccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE
Q 023932          184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI  222 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I  222 (275)
                      |++|.|++.|.+.+.+.+++.+.+|+++.+++.+.|+.+
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~  192 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLA  192 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHH
Confidence            999999999999999999999999999999988887765

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.17  E-value=1.7e-10  Score=108.22  Aligned_cols=145  Identities=16%  Similarity=0.207  Sum_probs=93.6

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc-----------CccEEEEeCCCccccccchhHHHHHHHHHH
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL-----------DADLYYWTKSLRPVQWYPGHIAKTEKELKD  116 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~  116 (275)
                      ..+.+.+||+..  -+|+++.++............+.++           ...+..||+ .+.++.+|.++.+..+.+.+
T Consensus       188 ~~~~ValvG~~N--vGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT-~G~~~~l~~~lie~f~~tle  264 (351)
T TIGR03156       188 DVPTVALVGYTN--AGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDT-VGFIRDLPHELVAAFRATLE  264 (351)
T ss_pred             CCcEEEEECCCC--CCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEec-CcccccCCHHHHHHHHHHHH
Confidence            447999999921  2377776654433211111111111           124666764 44566777776666777788


Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH----HHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~----~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      .+.++|+||+|+|++++....+.    .+...+.  ++|+++|+||+|+.+..+...    +......++++||++|.|+
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhCCCCEEEEEccCCCCH
Confidence            89999999999999987654332    1222233  689999999999976543221    2122245899999999999


Q ss_pred             hhHHHHHHH
Q 023932          191 MKLSRLAKA  199 (275)
Q Consensus       191 ~~L~~~i~~  199 (275)
                      ++|.+.|.+
T Consensus       341 ~eL~~~I~~  349 (351)
T TIGR03156       341 DLLLEAIAE  349 (351)
T ss_pred             HHHHHHHHh
Confidence            999888764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG1159 Era GTPase [General function prediction only]

Probab=99.17  E-value=1.7e-11  Score=110.63  Aligned_cols=54  Identities=31%  Similarity=0.448  Sum_probs=43.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT  273 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~  273 (275)
                      --|+|||+||||||||+|+|++.+.+.||+.|.|||+.  ++..+..+.-++.++|
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~--I~GI~t~~~~QiIfvD   60 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIVTTDNAQIIFVD   60 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh--eeEEEEcCCceEEEEe
Confidence            35899999999999999999999999999999999997  5544444444444443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.15  E-value=2.5e-11  Score=101.22  Aligned_cols=39  Identities=41%  Similarity=0.560  Sum_probs=35.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ++|+++|.||||||||+|+|++.+ ..+++.||+|.+...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~   39 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKE   39 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeee
Confidence            479999999999999999999988 889999999998653

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.15  E-value=3.2e-10  Score=102.45  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-eeEEecCc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QGT-KVIFSNGQ  185 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-~vi~iSak  185 (275)
                      +.+.+...++.+|++++|+|++...... ..+...+.  ++|+++|+||+|+............+.+ .+. .++++||+
T Consensus        69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence            4455677889999999999998765443 34444443  6899999999999865544333333332 232 78999999


Q ss_pred             cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeE
Q 023932          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA  220 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv  220 (275)
                      +|.|+++|.+.+.+.++..+..++.+..++.+.++
T Consensus       148 ~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~  182 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRF  182 (270)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHH
Confidence            99999999999999988887777777776666554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.12  E-value=4.6e-10  Score=95.73  Aligned_cols=102  Identities=25%  Similarity=0.193  Sum_probs=74.7

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH---HHHHHHHHH-H
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA---DRNAWATYF-A  173 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~---~~~~~~~~~-~  173 (275)
                      +=+.||| ..+.+.+...+..+|++|+|||+..+......+....+.  +.|+++|+||+|+....   ..+++...+ +
T Consensus        74 ~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   74 LIDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLK  152 (188)
T ss_dssp             EEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred             ecccccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence            4467999 457778888899999999999999887766655555554  78999999999998322   112232222 2


Q ss_pred             HcC------CeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQG------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g------~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+      .+++++||.+|.|+++|++.+.++.+
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            222      36999999999999999999887654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK15494 era GTPase Era; Provisional

Probab=99.11  E-value=7.1e-10  Score=103.55  Aligned_cols=112  Identities=14%  Similarity=0.040  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC--CeeEEecCc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQ  185 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g--~~vi~iSak  185 (275)
                      +.+.....+..+|++|+|+|++..+...+..+...+.  +.|.++|+||+|+... ...+..+.+.+.+  ..++++||+
T Consensus       121 ~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        121 MVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4555666789999999999998876665555555554  5788999999999654 2334444444433  468999999


Q ss_pred             cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE
Q 023932          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI  222 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I  222 (275)
                      +|.|+++|.++|.+.+++.+..|+++..++.+.++.+
T Consensus       200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~  236 (339)
T PRK15494        200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIA  236 (339)
T ss_pred             CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999999998888887766544

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.07  E-value=2.4e-10  Score=108.53  Aligned_cols=169  Identities=14%  Similarity=0.109  Sum_probs=105.3

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEeC--C-CccccccchhHHH------HHHHHHHHHhhc
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTK--S-LRPVQWYPGHIAK------TEKELKDQLKLM  121 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~-~~~i~~~pG~~~~------~~k~l~~~l~~a  121 (275)
                      .|.+||.  |+-.|+|+.++.......-....+.++...+-....  . ...+-+.||....      ...++.+.++++
T Consensus       161 dValVG~--PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGL--PNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcC--CCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            5777787  333499988776543322222223333333322211  1 1234466776431      345666789999


Q ss_pred             CeEEEEEeCCCC---CC-CCcHHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cC--CeeEEecCccc
Q 023932          122 DVVIEVRDARIP---LS-TTHPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAK-QG--TKVIFSNGQLG  187 (275)
Q Consensus       122 DlVI~VvDar~p---~s-~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g--~~vi~iSak~g  187 (275)
                      |++++|+|+...   .. .....+.+.+       .++|.++|+||+|+....+..+.+..+.+ .+  ..++++||+++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998722   11 1111222222       25899999999999876555444444433 23  36899999999


Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEE
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG  221 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~  221 (275)
                      .|+++|.+.|.+++++.+..++++..++.+.++.
T Consensus       319 ~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~  352 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFM  352 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcccCCcccccCccHHHH
Confidence            9999999999888877777777777777666544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.05  E-value=2.4e-10  Score=98.08  Aligned_cols=43  Identities=33%  Similarity=0.574  Sum_probs=38.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~  259 (275)
                      ...|+|+|++|||||||||+|++++ -+.||..||.|+.+..+.
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~   67 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE   67 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE
Confidence            4579999999999999999999955 589999999999998666

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.04  E-value=2.9e-10  Score=89.26  Aligned_cols=53  Identities=38%  Similarity=0.579  Sum_probs=45.4

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ||+|+|.||||||||||+|++.+...+++.+|+|++.....      .+.+.+++|++.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~   59 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIND   59 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcc
Confidence            58999999999999999999988889999999999995422      357888888765

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.02  E-value=2.3e-09  Score=94.57  Aligned_cols=104  Identities=14%  Similarity=-0.003  Sum_probs=76.5

Q ss_pred             CccccccchhHHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH
Q 023932           97 LRPVQWYPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF  172 (275)
Q Consensus        97 ~~~i~~~pG~~~~~~k~l~~~l~--~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~  172 (275)
                      ...+-+.||| .++.+.+...+.  .+|++++|+|++.+....+..+..++.  ++|+++|+||+|+.+.....+..+.+
T Consensus        85 ~i~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l  163 (224)
T cd04165          85 LVTFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDL  163 (224)
T ss_pred             EEEEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHH
Confidence            3344568999 556566555554  789999999999888777777777765  78999999999998765444433332


Q ss_pred             HHc------------------------------CCeeEEecCccccchhhHHHHHHHHh
Q 023932          173 AKQ------------------------------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       173 ~~~------------------------------g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+.                              ..+++.+|+.+|.|+++|.++|..+.
T Consensus       164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp  222 (224)
T cd04165         164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP  222 (224)
T ss_pred             HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence            211                              12688999999999999999887653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK00089 era GTPase Era; Reviewed

Probab=99.02  E-value=2.8e-09  Score=97.08  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-C-CeeEEecCc
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G-TKVIFSNGQ  185 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-g-~~vi~iSak  185 (275)
                      .+.....+.++|++++|+|+..+....+..+...+.  ++|+++|+||+|+. +........+.+.+. + ..++++||+
T Consensus        75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~  154 (292)
T PRK00089         75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL  154 (292)
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence            445566789999999999999876666666666665  57999999999998 545555555555442 2 578999999


Q ss_pred             cccchhhHHHHHHHHhchhhhhhhcCCCCCccee
Q 023932          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR  219 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~r  219 (275)
                      ++.|+++|.+.+.+..+..+..++.+..++.+.+
T Consensus       155 ~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r  188 (292)
T PRK00089        155 KGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER  188 (292)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence            9999999999999888777666766666555544

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.00  E-value=3.9e-09  Score=87.83  Aligned_cols=94  Identities=19%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCC--eeEEecCcc
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT--KVIFSNGQL  186 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~--~vi~iSak~  186 (275)
                      ...+.+...+..+|++++|+|+..+.+.....+.....++|+++++||+|+... +.+...+++.+.+.  +++++||++
T Consensus        53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCC
Confidence            345555667899999999999987765555555544346799999999998643 33444455555553  799999999


Q ss_pred             ccchhhHHHHHHHHhch
Q 023932          187 GMGTMKLSRLAKALASD  203 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~  203 (275)
                      |.|+++|.+.+.++...
T Consensus       132 g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             ccCHHHHHHHHHHhchh
Confidence            99999999998877654

>cd04171 SelB SelB subfamily

Probab=99.00  E-value=6.2e-09  Score=85.18  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---cCCCeEEEEEcccCcCHHH----HHHHHHHHHH-
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNRKRILVLNREDMISMAD----RNAWATYFAK-  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~-  174 (275)
                      .||+ .++.+.+...+..+|++++|+|+++...........++   ..+|+++|+||+|+.....    .+++.+.+.. 
T Consensus        58 tpG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~  136 (164)
T cd04171          58 VPGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT  136 (164)
T ss_pred             CCCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc
Confidence            5676 44556666778899999999999874333222222222   2349999999999976532    2333444444 


Q ss_pred             --cCCeeEEecCccccchhhHHHHHHH
Q 023932          175 --QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 --~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                        .+..++++||++|.|++++.+.+..
T Consensus       137 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         137 FLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence              2467999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.99  E-value=9.2e-09  Score=88.99  Aligned_cols=106  Identities=15%  Similarity=0.103  Sum_probs=72.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHHhc--C-CCeEEEEEcccCcCHH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQWLG--N-RKRILVLNREDMISMA  163 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~  163 (275)
                      ..+..||        .||| ..+.+.+...+..+|++++|+|+..+. ..........+.  + +|+++|+||+|+....
T Consensus        83 ~~i~~iD--------tPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          83 RHVSFVD--------CPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cEEEEEE--------CCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH
Confidence            3456676        5776 567777788889999999999998752 222222222222  3 4789999999998754


Q ss_pred             HHHHHHHH----HHH---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          164 DRNAWATY----FAK---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       164 ~~~~~~~~----~~~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ......+.    +..   .+..++++||++|.|+++|.+.+.+..+
T Consensus       154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            33222222    222   1457899999999999999998876554

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01894 EngA1 EngA1 subfamily

Probab=98.98  E-value=1.1e-08  Score=82.90  Aligned_cols=87  Identities=24%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL  186 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~  186 (275)
                      ..+.....++.+|++++|+|++++.+..+..+..++.  +.|+++|+||+|+......   ...+.+.+. .++++|+++
T Consensus        66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~  142 (157)
T cd01894          66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEH  142 (157)
T ss_pred             HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEeccc
Confidence            4455566789999999999999887777777777765  7899999999999876443   223334454 789999999


Q ss_pred             ccchhhHHHHHHH
Q 023932          187 GMGTMKLSRLAKA  199 (275)
Q Consensus       187 g~Gi~~L~~~i~~  199 (275)
                      +.|++++.+.+.+
T Consensus       143 ~~gv~~l~~~l~~  155 (157)
T cd01894         143 GRGIGDLLDAILE  155 (157)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999888764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01890 LepA LepA subfamily

Probab=98.98  E-value=7.4e-09  Score=86.53  Aligned_cols=96  Identities=19%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHH-HcCC--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGT--  177 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-~~g~--  177 (275)
                      .||+ .++.......++.+|++|+|+|++++.+..+......+  .++|+++|+||+|+..... .+..+.+. ..+.  
T Consensus        74 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~  151 (179)
T cd01890          74 TPGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDVLGLDP  151 (179)
T ss_pred             CCCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCCCc
Confidence            4666 44566667788999999999999876554443322222  2789999999999864221 11112222 2233  


Q ss_pred             -eeEEecCccccchhhHHHHHHHH
Q 023932          178 -KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       178 -~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                       .++.+||++|.|+++|.+.+.+.
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhh
Confidence             48999999999999998887654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01889 SelB_euk SelB subfamily

Probab=98.95  E-value=1.2e-08  Score=87.04  Aligned_cols=105  Identities=22%  Similarity=0.286  Sum_probs=71.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hcCCCeEEEEEcccCcCHHHH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADR  165 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~--L~~kp~IlVlNK~Dl~~~~~~  165 (275)
                      ..+..||        .||| ..+.+.+...+..+|.+++|+|++.+..........+  ..++|+++|+||+|+......
T Consensus        68 ~~~~i~D--------tpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~  138 (192)
T cd01889          68 LQITLVD--------CPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEER  138 (192)
T ss_pred             ceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHH
Confidence            3456666        5777 3566666677788999999999987654433222222  237899999999999754332


Q ss_pred             ----HHHHHHHHH-------cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          166 ----NAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       166 ----~~~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                          +++.+.+.+       .+..++++||++|.|+++|++.+....
T Consensus       139 ~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         139 ERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence                222222211       245799999999999999998876543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.94  E-value=9.8e-09  Score=82.78  Aligned_cols=86  Identities=16%  Similarity=0.084  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH-HHHHHHHHHHHcCC-eeEEecCcccc
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA-DRNAWATYFAKQGT-KVIFSNGQLGM  188 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~-~vi~iSak~g~  188 (275)
                      .+.+...++++|++|+|+|+.++.+..+..+...+ .+|+++|+||+|+.+.. ..+...+++.+.+. .++.+||++|.
T Consensus        53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  131 (142)
T TIGR02528        53 YSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQ  131 (142)
T ss_pred             HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence            34444568999999999999988776665554443 46999999999997532 12222333444454 68999999999


Q ss_pred             chhhHHHHH
Q 023932          189 GTMKLSRLA  197 (275)
Q Consensus       189 Gi~~L~~~i  197 (275)
                      |++++.+.+
T Consensus       132 gi~~l~~~l  140 (142)
T TIGR02528       132 GLEALVDYL  140 (142)
T ss_pred             CHHHHHHHH
Confidence            999988765

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.92  E-value=2.7e-09  Score=99.32  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=87.6

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccE--EEEeC-CCccccccchhHH------HHHHHHHHHHhhc
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADL--YYWTK-SLRPVQWYPGHIA------KTEKELKDQLKLM  121 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~i~~~pG~~~------~~~k~l~~~l~~a  121 (275)
                      .|.+||.  |+-.|+++.++............+.++...+  +.+.. .-..+-++||...      .+..++.+.++++
T Consensus       159 dV~lvG~--pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       159 DVGLVGL--PNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             cEEEEcC--CCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5566676  3344888876654332221111222222211  11111 1112334676532      2445666778999


Q ss_pred             CeEEEEEeCCCCCCC-C--c-H----HHHHH---hcCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCCeeEEecCccccc
Q 023932          122 DVVIEVRDARIPLST-T--H-P----LMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG  189 (275)
Q Consensus       122 DlVI~VvDar~p~s~-~--d-~----~l~~~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~~vi~iSak~g~G  189 (275)
                      |++|+|+|+...... .  + .    ++..+   +.++|+++|+||+|+.......++.+.+.+ .+..++++||+++.|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G  316 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG  316 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence            999999999764111 1  1 1    12122   236899999999999876555555555543 356799999999999


Q ss_pred             hhhHHHHHHHH
Q 023932          190 TMKLSRLAKAL  200 (275)
Q Consensus       190 i~~L~~~i~~l  200 (275)
                      +++|.+.+.++
T Consensus       317 I~eL~~~I~~~  327 (329)
T TIGR02729       317 LDELLYALAEL  327 (329)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.92  E-value=4.8e-09  Score=102.15  Aligned_cols=151  Identities=18%  Similarity=0.160  Sum_probs=89.9

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEE--EEeCCCccccccchhHH------HHHHHHHHHHhhcC
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIA------KTEKELKDQLKLMD  122 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~pG~~~------~~~k~l~~~l~~aD  122 (275)
                      -|-+||.  |+-.|+++.++......+-....+.++...+-  .+......+-+.||...      .+..++.+.++++|
T Consensus       161 dV~LVG~--PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        161 DVGLVGF--PSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             eEEEEEc--CCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            4566776  33448888877654433222222233332211  11111122344676421      22345566789999


Q ss_pred             eEEEEEeCCCC------CCCCc---HHHHHH------------hcCCCeEEEEEcccCcCHHHHHHH-HHHHHHcCCeeE
Q 023932          123 VVIEVRDARIP------LSTTH---PLMDQW------------LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVI  180 (275)
Q Consensus       123 lVI~VvDar~p------~s~~d---~~l~~~------------L~~kp~IlVlNK~Dl~~~~~~~~~-~~~~~~~g~~vi  180 (275)
                      +||+|+|+...      ....+   .++..+            +.++|.|+|+||+|+....+..+. ...+.+.+..++
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf  318 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF  318 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence            99999999642      22211   123333            236899999999999755443333 234445567899


Q ss_pred             EecCccccchhhHHHHHHHHhch
Q 023932          181 FSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ++||+++.|+++|..+|.++...
T Consensus       319 ~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        319 EVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHh
Confidence            99999999999998888776644

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.92  E-value=2.7e-09  Score=99.55  Aligned_cols=151  Identities=17%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccE--EEEeC-CCccccccchhHH------HHHHHHHHHHhhc
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADL--YYWTK-SLRPVQWYPGHIA------KTEKELKDQLKLM  121 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~i~~~pG~~~------~~~k~l~~~l~~a  121 (275)
                      .|.+||.  |+-.|+++.++.......-....+.++...+  +.+.+ .-..+-+.||...      .+..++.+.++++
T Consensus       160 dVglVG~--PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        160 DVGLVGL--PNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CEEEEcC--CCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            4566666  3345888876654332222222222332221  22211 1123345676532      2445677788999


Q ss_pred             CeEEEEEeCCCCCCCCc-HHHHHHh-------cCCCeEEEEEcccCcCHHHHH-HHHH-HHHHcCCeeEEecCccccchh
Q 023932          122 DVVIEVRDARIPLSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRN-AWAT-YFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d-~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~-~~~~-~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      |++|+|+|+.+..+..+ ..+...+       .++|+++|+||+|+.+..+.. +... ++.+.+..++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            99999999986532111 1122212       268999999999997654322 2222 233345689999999999999


Q ss_pred             hHHHHHHHHhch
Q 023932          192 KLSRLAKALASD  203 (275)
Q Consensus       192 ~L~~~i~~l~~~  203 (275)
                      +|.+.|.+...+
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999988776543

>PRK11058 GTPase HflX; Provisional

Probab=98.91  E-value=7e-09  Score=99.67  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=90.1

Q ss_pred             CCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccC-----------ccEEEEeCCCccccccchhHHHHHHHHH
Q 023932           47 SSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLD-----------ADLYYWTKSLRPVQWYPGHIAKTEKELK  115 (275)
Q Consensus        47 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~~~~~~~~i~~~pG~~~~~~k~l~  115 (275)
                      ..-|.+.+||+.  +-+|+++.|+.....-......+.+++           ..+..||+. +.++..|......+..+.
T Consensus       195 ~~~p~ValVG~~--NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTa-G~~r~lp~~lve~f~~tl  271 (426)
T PRK11058        195 ADVPTVSLVGYT--NAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTV-GFIRHLPHDLVAAFKATL  271 (426)
T ss_pred             cCCCEEEEECCC--CCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecC-cccccCCHHHHHHHHHHH
Confidence            345789999991  123877776543221111111111111           134566543 345555655555566667


Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCe-eEEecCcccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQLGM  188 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~----~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~-vi~iSak~g~  188 (275)
                      +.+.++|++|+|+|+.++....+.    .+...+.  ++|+++|+||+|+.+.... . ... ...+.. ++++||++|.
T Consensus       272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~  348 (426)
T PRK11058        272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGA  348 (426)
T ss_pred             HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCC
Confidence            788999999999999887543332    1122222  6899999999999753211 1 111 123333 5789999999


Q ss_pred             chhhHHHHHHHHh
Q 023932          189 GTMKLSRLAKALA  201 (275)
Q Consensus       189 Gi~~L~~~i~~l~  201 (275)
                      |+++|.+.|.+..
T Consensus       349 GIdeL~e~I~~~l  361 (426)
T PRK11058        349 GIPLLFQALTERL  361 (426)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999887665

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.91  E-value=7.7e-09  Score=85.21  Aligned_cols=99  Identities=18%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHH----
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAK----  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~----  174 (275)
                      .||+. .........+..+|++++|+|+..+..........++.  ++|+++|+||+|+....  ...+....+..    
T Consensus        57 tpG~~-~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  135 (168)
T cd01887          57 TPGHE-AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGED  135 (168)
T ss_pred             CCCcH-HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccc
Confidence            57763 23333344678999999999998764333222333332  78999999999987432  11111111111    


Q ss_pred             ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                         ....++++|+++|.|+++|.++|.++..
T Consensus       136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         136 EWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             cccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence               1247899999999999999998877643

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.90  E-value=1.2e-09  Score=99.66  Aligned_cols=147  Identities=16%  Similarity=0.133  Sum_probs=114.1

Q ss_pred             cccCCCCCeeeEecC--CCCCCCCCCCCCCCCcchhhHHhhcccccCc----------cEEEEeCCCccccccchhHHHH
Q 023932           43 SSLSSSAPIIQTVGG--KQSSWHGGNSNNSNGSIEAYEEECDWADLDA----------DLYYWTKSLRPVQWYPGHIAKT  110 (275)
Q Consensus        43 ~~~~~~~~~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~i~~~pG~~~~~  110 (275)
                      ..-+++.|+|++|||  +|    |+++-.+.......-.+++|+.++.          ..+...++.++++.+|-++...
T Consensus       172 gr~~~s~pviavVGYTNaG----KsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaA  247 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAG----KSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAA  247 (410)
T ss_pred             ccccCCCceEEEEeecCcc----HHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHH
Confidence            455778899999999  56    9999999998888999999999998          4666778999999999999999


Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHhc--CC-------CeEEEEEcccCcCHHHHHHHHHHHHHcCCeeE
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWLG--NR-------KRILVLNREDMISMADRNAWATYFAKQGTKVI  180 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L~--~k-------p~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi  180 (275)
                      ++.+.+.+..+|++++|+|.++|...... .....+.  +.       ..+=|-||+|..+...        .......+
T Consensus       248 F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------e~E~n~~v  319 (410)
T KOG0410|consen  248 FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------EEEKNLDV  319 (410)
T ss_pred             HHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--------ccccCCcc
Confidence            99999999999999999999998665432 2333333  22       3455788888754321        11112378


Q ss_pred             EecCccccchhhHHHHHHHHh
Q 023932          181 FSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+||++|.|++++...+....
T Consensus       320 ~isaltgdgl~el~~a~~~kv  340 (410)
T KOG0410|consen  320 GISALTGDGLEELLKAEETKV  340 (410)
T ss_pred             ccccccCccHHHHHHHHHHHh
Confidence            899999999999988776543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.90  E-value=4e-09  Score=97.19  Aligned_cols=127  Identities=20%  Similarity=0.294  Sum_probs=99.5

Q ss_pred             CCCCCCCCCcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---Cc
Q 023932           64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---TH  138 (275)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~---~d  138 (275)
                      ++.++.+..-++-++|+++--.++.-|.++.+..++  |.+.||| +...+.+---...||+.|++||+|.+...   .+
T Consensus        52 g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH  130 (431)
T COG2895          52 GEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRH  130 (431)
T ss_pred             CCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHH
Confidence            477889999999999999999999999999888876  6899999 56666666667889999999999988544   34


Q ss_pred             HHHHHHhcCCCeEEEEEcccCcCHHH--HHH----HHHHHHHcC---CeeEEecCccccchh
Q 023932          139 PLMDQWLGNRKRILVLNREDMISMAD--RNA----WATYFAKQG---TKVIFSNGQLGMGTM  191 (275)
Q Consensus       139 ~~l~~~L~~kp~IlVlNK~Dl~~~~~--~~~----~~~~~~~~g---~~vi~iSak~g~Gi~  191 (275)
                      ..+..+|.-+.+++.+||+||++..+  -++    +..+..+++   ..++++||..|.++.
T Consensus       131 s~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         131 SFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            45666676778899999999997643  222    233333444   468999999998874

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.89  E-value=2.5e-08  Score=83.50  Aligned_cols=98  Identities=17%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH----HHHHHHHH--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN----AWATYFAK--  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~--  174 (275)
                      .||+ ..........+..+|.+++|+|+..+.......+...+.  ++|+++|+||+|+....+..    ...+.+..  
T Consensus        69 tpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          69 TPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence            5675 344555667788999999999998876555555544444  78999999999998643322    22222222  


Q ss_pred             ------------cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 ------------QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ------------~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                                  ....++++||++|.|++++.+.+....
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                        235789999999999999988877654

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.89  E-value=1.2e-08  Score=101.62  Aligned_cols=103  Identities=18%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH----HHHHHHH
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFA  173 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~----~~~~~~~  173 (275)
                      -+.||| .++.+.+...+..+|++++|+|+.++......+...++.  +.| +++|+||+|+.+....+    +..+.+.
T Consensus        55 iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~  133 (581)
T TIGR00475        55 IDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILN  133 (581)
T ss_pred             EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            357998 667788888889999999999999865443333333332  667 99999999998765332    2222233


Q ss_pred             Hc----CCeeEEecCccccchhhHHHHHHHHhchh
Q 023932          174 KQ----GTKVIFSNGQLGMGTMKLSRLAKALASDV  204 (275)
Q Consensus       174 ~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~~~  204 (275)
                      ..    +..++++||++|.|++++.+.+..+....
T Consensus       134 ~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       134 SYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             HhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence            32    35799999999999999999888776554

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01895 EngA2 EngA2 subfamily

Probab=98.88  E-value=2.1e-08  Score=82.26  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=64.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCH--HHHHHHHHHHHHc-----CCeeEEecC
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNG  184 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~-----g~~vi~iSa  184 (275)
                      ....+..+|++++|+|+.++.+..+..+...+  .++|+++|+||+|+...  ...+.+.+.+.+.     ...++++||
T Consensus        78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            34567899999999999988776665555554  37899999999999765  3444444444332     257899999


Q ss_pred             ccccchhhHHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKAL  200 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l  200 (275)
                      +++.|++++.+.+..+
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999998877653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.86  E-value=1.1e-08  Score=102.37  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=75.9

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHHH----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA----WATYF  172 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~~----~~~~~  172 (275)
                      +=+.||| .++.+.+...+..+|++++|+|+.++......+...++.  +.+ +++|+||+|+.+....+.    +.+.+
T Consensus        55 ~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l  133 (614)
T PRK10512         55 FIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL  133 (614)
T ss_pred             EEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH
Confidence            3357999 667788888899999999999999876665555444443  556 579999999987543332    33333


Q ss_pred             HHcC---CeeEEecCccccchhhHHHHHHHHhch
Q 023932          173 AKQG---TKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       173 ~~~g---~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ...+   ..++++||++|.|+++|.+.|.++...
T Consensus       134 ~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        134 REYGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             HhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            3333   468999999999999999998876543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.84  E-value=2.8e-08  Score=81.55  Aligned_cols=89  Identities=20%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCc-CHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQGT-KVIFSNGQL  186 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g~-~vi~iSak~  186 (275)
                      .+.+.+.....+||+|++|.|+..+.+...+.+...+ ++|+|-|+||+|+. +..+.+...++++..|. +++.+|+.+
T Consensus        52 ~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~  130 (143)
T PF10662_consen   52 RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVT  130 (143)
T ss_pred             HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence            4556666777999999999999998888888877665 68999999999998 44555666667776673 689999999


Q ss_pred             ccchhhHHHHHH
Q 023932          187 GMGTMKLSRLAK  198 (275)
Q Consensus       187 g~Gi~~L~~~i~  198 (275)
                      |+|+++|+++|+
T Consensus       131 ~eGi~eL~~~L~  142 (143)
T PF10662_consen  131 GEGIEELKDYLE  142 (143)
T ss_pred             CcCHHHHHHHHh
Confidence            999999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04149 Arf6 Arf6 subfamily

Probab=98.81  E-value=2.1e-08  Score=84.00  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .+.......+++++|++|+|+|+.++.+..  ...+.+.+.     +.|++||+||+|+.
T Consensus        53 ~~~~l~D--------t~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  123 (168)
T cd04149          53 VKFNVWD--------VGGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP  123 (168)
T ss_pred             EEEEEEE--------CCCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence            3466666        4565 333334455789999999999998753221  122333332     57999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .....++..+++.     .....++++||++|.|++++.++|.
T Consensus       124 ~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         124 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             cCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence            4222222222221     1123578999999999998887764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04163 Era Era subfamily

Probab=98.80  E-value=1.2e-07  Score=76.91  Aligned_cols=89  Identities=22%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHcC--CeeEEecCcc
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQL  186 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g--~~vi~iSak~  186 (275)
                      +.....+..+|++++|+|+.++....+..+.+.+.  +.|+++|+||+|+. ......++...+....  ..++.+|+++
T Consensus        74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  153 (168)
T cd04163          74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK  153 (168)
T ss_pred             HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence            44556789999999999999886666666656554  48999999999998 4555566666665543  5789999999


Q ss_pred             ccchhhHHHHHHHH
Q 023932          187 GMGTMKLSRLAKAL  200 (275)
Q Consensus       187 g~Gi~~L~~~i~~l  200 (275)
                      +.|++++.+.|.+.
T Consensus       154 ~~~~~~l~~~l~~~  167 (168)
T cd04163         154 GENVDELLEEIVKY  167 (168)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999998887654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.80  E-value=4.3e-08  Score=80.96  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             hcCeEEEEEeCCCCCCCC-c--HHHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhh
Q 023932          120 LMDVVIEVRDARIPLSTT-H--PLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK  192 (275)
Q Consensus       120 ~aDlVI~VvDar~p~s~~-d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~  192 (275)
                      .+|++|+|+|+.+..+.. +  ..+...+    .+.|+++|+||+|+.......+..++....+..++.+||++|.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            368999999998754321 1  1222222    26899999999999765544332222222346789999999999999


Q ss_pred             HHHHHHHH
Q 023932          193 LSRLAKAL  200 (275)
Q Consensus       193 L~~~i~~l  200 (275)
                      +.+++.+.
T Consensus       159 l~~~l~~~  166 (168)
T cd01897         159 VKNKACEL  166 (168)
T ss_pred             HHHHHHHH
Confidence            98887653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=98.79  E-value=8.7e-08  Score=82.31  Aligned_cols=107  Identities=17%  Similarity=0.231  Sum_probs=69.0

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh---c--CCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---G--NRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L---~--~kp~IlVlNK~Dl~~~  162 (275)
                      .+..||+.. ....++.++...+......+.++|++++|+|++++....+. .+..++   .  ++|+++|+||+|+...
T Consensus        90 ~~~i~Dt~G-~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~  168 (204)
T cd01878          90 EVLLTDTVG-FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD  168 (204)
T ss_pred             eEEEeCCCc-cccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence            455555332 22222222333344445567889999999999987655432 122222   2  5799999999999876


Q ss_pred             HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ....   ..+...+..++++||+++.|++++.+.|..
T Consensus       169 ~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         169 EELE---ERLEAGRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             HHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            5433   223333457899999999999999887654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK13768 GTPase; Provisional

Probab=98.79  E-value=3.7e-08  Score=88.42  Aligned_cols=112  Identities=22%  Similarity=0.288  Sum_probs=78.4

Q ss_pred             cccCccEEEEeCCCccccccchhHH-----HHHHHHHHHHhh--cCeEEEEEeCCCCCCCCcHHHHHHh-------cCCC
Q 023932           84 ADLDADLYYWTKSLRPVQWYPGHIA-----KTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQWL-------GNRK  149 (275)
Q Consensus        84 ~~~~~d~~~~~~~~~~i~~~pG~~~-----~~~k~l~~~l~~--aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp  149 (275)
                      .....||+.+|        .||.+.     ..++.+.+.+..  .+++++|+|++......+.....++       .++|
T Consensus        93 ~~~~~~~~~~d--------~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~  164 (253)
T PRK13768         93 ESLDADYVLVD--------TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP  164 (253)
T ss_pred             HhcCCCEEEEe--------CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence            44556899998        456543     234555555555  8999999999886655554444332       2789


Q ss_pred             eEEEEEcccCcCHHHHHHHHHHHH----------------------------HcC--CeeEEecCccccchhhHHHHHHH
Q 023932          150 RILVLNREDMISMADRNAWATYFA----------------------------KQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       150 ~IlVlNK~Dl~~~~~~~~~~~~~~----------------------------~~g--~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +++|+||+|+.+..+.++...++.                            +.+  ..++++|++++.|+++|.++|.+
T Consensus       165 ~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~  244 (253)
T PRK13768        165 QIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQE  244 (253)
T ss_pred             EEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence            999999999987655443333222                            223  47899999999999999999988


Q ss_pred             Hhch
Q 023932          200 LASD  203 (275)
Q Consensus       200 l~~~  203 (275)
                      ....
T Consensus       245 ~l~~  248 (253)
T PRK13768        245 VFCG  248 (253)
T ss_pred             HcCC
Confidence            7643

>cd01898 Obg Obg subfamily

Probab=98.78  E-value=3.3e-08  Score=81.65  Aligned_cols=90  Identities=19%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCC-CCCCc-HHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHHc--CCee
Q 023932          111 EKELKDQLKLMDVVIEVRDARIP-LSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKV  179 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p-~s~~d-~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~--g~~v  179 (275)
                      ...+.+.++.+|++++|+|++++ .+... ..+.+.+       .++|+++|+||+|+.+.....++...+...  +..+
T Consensus        69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  148 (170)
T cd01898          69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV  148 (170)
T ss_pred             hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence            34445566789999999999876 22111 1121111       257999999999998765555555444333  4678


Q ss_pred             EEecCccccchhhHHHHHHHH
Q 023932          180 IFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l  200 (275)
                      +.+|++++.|++++.+.+.++
T Consensus       149 ~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         149 FPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            999999999999998887654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.77  E-value=6.4e-08  Score=82.13  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCCCCcch-----hhH----HhhcccccCccEEEEeCCCccccccchhHH-HHHHHHHHH
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNSNGSIE-----AYE----EECDWADLDADLYYWTKSLRPVQWYPGHIA-KTEKELKDQ  117 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~-~~~k~l~~~  117 (275)
                      ..+-+.++|..+  -+|+++-++...+.     +..    ....+.....++..||+........+..+. .....+...
T Consensus        23 ~~~~v~ivG~~~--~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~  100 (196)
T PRK00454         23 DGPEIAFAGRSN--VGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY  100 (196)
T ss_pred             CCCEEEEEcCCC--CCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence            556788888833  33666554433221     000    001112223456667654422222222222 222233333


Q ss_pred             Hh---hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHH----HHHHHcCCeeEEecCcccc
Q 023932          118 LK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       118 l~---~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~----~~~~~~g~~vi~iSak~g~  188 (275)
                      ++   .++++++|+|+..+....+..+.+++.  +.|+++++||+|+.+..+.+...    ..+......++++||+++.
T Consensus       101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~  180 (196)
T PRK00454        101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ  180 (196)
T ss_pred             HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence            43   457899999998876665555555554  68899999999998765443322    2332224678999999999


Q ss_pred             chhhHHHHHHHHhc
Q 023932          189 GTMKLSRLAKALAS  202 (275)
Q Consensus       189 Gi~~L~~~i~~l~~  202 (275)
                      |++++.+.|.+++.
T Consensus       181 gi~~l~~~i~~~~~  194 (196)
T PRK00454        181 GIDELRAAIAKWLA  194 (196)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999887764

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.77  E-value=5.7e-08  Score=94.18  Aligned_cols=102  Identities=13%  Similarity=0.080  Sum_probs=72.2

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-CCCCc---HHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-LSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK-  174 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-~s~~d---~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-  174 (275)
                      +=+.||| ..+.+.+...+..+|++++|+|+..+ .....   ..+...+.-+++|+|+||+|+.+.....+..+.+.+ 
T Consensus       121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~  199 (460)
T PTZ00327        121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF  199 (460)
T ss_pred             eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence            3457998 67888888889999999999999875 23221   122222334568899999999875543333333222 


Q ss_pred             ------cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 ------QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ------~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                            ....++++||++|.|++.|++.|.+..+
T Consensus       200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        200 VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence                  2467999999999999999999886443

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.77  E-value=2.6e-08  Score=95.02  Aligned_cols=101  Identities=22%  Similarity=0.281  Sum_probs=78.9

Q ss_pred             ccccchhHHH-HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC
Q 023932          100 VQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAKQGT  177 (275)
Q Consensus       100 i~~~pG~~~~-~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~  177 (275)
                      +++.....++ +.++.++.+++||+|++|+|++.+....+..+...+. ++|+++|+||+||......... + + ..+.
T Consensus       275 iRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~-~-~~~~  351 (454)
T COG0486         275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K-L-ANGD  351 (454)
T ss_pred             cccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h-c-cCCC
Confidence            3455555554 6899999999999999999999988888887777444 7899999999999876543222 1 1 1234


Q ss_pred             eeEEecCccccchhhHHHHHHHHhch
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      .++.+|+++|.|++.|.+.|..+...
T Consensus       352 ~~i~iSa~t~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         352 AIISISAKTGEGLDALREAIKQLFGK  377 (454)
T ss_pred             ceEEEEecCccCHHHHHHHHHHHHhh
Confidence            68999999999999999999887654

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.76  E-value=1.7e-08  Score=92.47  Aligned_cols=43  Identities=37%  Similarity=0.565  Sum_probs=38.0

Q ss_pred             CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +.+...++.|.|+||||||||+++|.+.+ ..+++.|+||+.+.
T Consensus       164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~  206 (346)
T COG1084         164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIH  206 (346)
T ss_pred             CCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCcccccee
Confidence            34456789999999999999999999876 99999999999884

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.76  E-value=3.1e-08  Score=81.71  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++.+|++++|+|+.++.+..  ...+..++     .+.|+++|+||+|+.
T Consensus        50 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~  120 (167)
T cd04160          50 ARLKFWD--------LGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP  120 (167)
T ss_pred             EEEEEEE--------CCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence            4556666        4666 334444556789999999999997653211  11222222     268999999999986


Q ss_pred             CHHHHHHHHHHHHH-------cCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ......+..+.+..       .+..++.+||++|.|++++.++|.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         121 DALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             cCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence            54322232233222       124799999999999999988764

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.75  E-value=4.9e-08  Score=82.15  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=64.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .........+++++|++|+|+|+.++.+.  ....+..++.     +.|++||+||+|+.
T Consensus        57 ~~l~l~D--------~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~  127 (175)
T smart00177       57 ISFTVWD--------VGGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP  127 (175)
T ss_pred             EEEEEEE--------CCCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence            3466776        4554 33444445568999999999998765322  1222333322     47999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .....++....+.     .....++++||++|.|++++.++|.+.
T Consensus       128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  172 (175)
T smart00177      128 DAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN  172 (175)
T ss_pred             cCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence            4321122222221     112246689999999999998887654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.75  E-value=1.8e-08  Score=94.57  Aligned_cols=43  Identities=30%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ...+|+++|+||||||||+|+|++.+ ..+++.||+|+|.....
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~  230 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRR  230 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEE
Confidence            34799999999999999999999987 77899999999997654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.74  E-value=5.7e-08  Score=82.47  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .+.......+++++|++|+|+|+.++.+..  ...+..++     .+.|++||+||+|+.
T Consensus        61 ~~~~i~D--------~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         61 ISFTVWD--------VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             EEEEEEE--------CCCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence            3466676        4554 344444456789999999999998753221  12233333     257999999999986


Q ss_pred             CHHHHHHHHHHHHHc-----CCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~~~~~~~~~~~~~-----g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .....++..+.+.-.     ...++.+||++|+|+.++.++|.+.
T Consensus       132 ~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  176 (181)
T PLN00223        132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
T ss_pred             CCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence            543333332222111     1135578999999999998887543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.74  E-value=5.5e-08  Score=82.09  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH----HHHHHHHHHcC--CeeEEecCccccchh
Q 023932          120 LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTM  191 (275)
Q Consensus       120 ~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~----~~~~~~~~~~g--~~vi~iSak~g~Gi~  191 (275)
                      .+|.+++|+|++.+.+..+..+..++.  ++|+++|+||+|+....+.    +++.+.+...+  ..++++||++|+|++
T Consensus       100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            468999999999887777766666654  6899999999999865433    33333444333  379999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.73  E-value=1.7e-07  Score=80.99  Aligned_cols=90  Identities=18%  Similarity=0.096  Sum_probs=64.7

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH-----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATY  171 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~-----~~~~~  171 (275)
                      +-+.|||. .+.+.+...+..+|++++|+|+..+.......+..++.  ++| +|+++||+|+....+..     +....
T Consensus        69 ~iDtPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~  147 (195)
T cd01884          69 HVDCPGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVREL  147 (195)
T ss_pred             EEECcCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHH
Confidence            33679994 67778888899999999999999877666655555554  666 67889999997533221     23333


Q ss_pred             HHHcC-----CeeEEecCccccch
Q 023932          172 FAKQG-----TKVIFSNGQLGMGT  190 (275)
Q Consensus       172 ~~~~g-----~~vi~iSak~g~Gi  190 (275)
                      +.+.+     ..++++||++|.+.
T Consensus       148 l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         148 LSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHhcccccCCeEEEeeCccccCC
Confidence            33333     46999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.73  E-value=1.5e-08  Score=96.35  Aligned_cols=52  Identities=25%  Similarity=0.314  Sum_probs=42.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC  270 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~  270 (275)
                      ..|+|||+||||||||||+|++.+ ..+++.|+|||+...-.       .+.+.++||+.
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~  218 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLI  218 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcc
Confidence            369999999999999999999876 69999999999976533       25666777764

>PRK09866 hypothetical protein; Provisional

Probab=98.73  E-value=5.1e-08  Score=96.62  Aligned_cols=98  Identities=15%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             ccchhHH----HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C--CCeEEEEEcccCcCH-----HHHHHH
Q 023932          102 WYPGHIA----KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMISM-----ADRNAW  168 (275)
Q Consensus       102 ~~pG~~~----~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~--kp~IlVlNK~Dl~~~-----~~~~~~  168 (275)
                      +.||.+.    ...+.+.++++++|+|++|+|+....+..+..+.+.+.  +  .|+++|+||+|+.+.     ..+.+.
T Consensus       236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~  315 (741)
T PRK09866        236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRAL  315 (741)
T ss_pred             ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHH
Confidence            4566543    14556677899999999999999877777877777765  4  499999999999752     222333


Q ss_pred             HH-HHHHcC---CeeEEecCccccchhhHHHHHHH
Q 023932          169 AT-YFAKQG---TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       169 ~~-~~~~~g---~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +. .+.+.+   ..++++||++|.|++.|++.|..
T Consensus       316 V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        316 ISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            22 222222   36999999999999999988876

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.72  E-value=3e-08  Score=95.96  Aligned_cols=55  Identities=31%  Similarity=0.346  Sum_probs=45.5

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ..+.+++++|+||||||||+|+|++.+...+++.||||+|.....      .+.+.+++|+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~  273 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGI  273 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCC
Confidence            346899999999999999999999988888999999999986544      2455666664

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.72  E-value=6.4e-08  Score=81.23  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=65.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++.+|++++|+|+.++.+..  ...+.+++.     +.|+++++||+|+.
T Consensus        59 ~~~~l~D--------~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~  129 (174)
T cd04153          59 IRFLMWD--------IGGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK  129 (174)
T ss_pred             eEEEEEE--------CCCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence            4566776        4554 233344455689999999999997653221  122333332     57999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .....++..+.+.     .....++++||++|.|++++.++|.
T Consensus       130 ~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         130 GAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             CCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence            4322222222221     1234689999999999999988764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04154 Arl2 Arl2 subfamily

Probab=98.72  E-value=4.9e-08  Score=81.61  Aligned_cols=95  Identities=12%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~--  173 (275)
                      +||+. .........++.+|++++|+|+.++.+..  ...+..++     .+.|+++|+||+|+......++..+.+.  
T Consensus        65 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  143 (173)
T cd04154          65 VGGQK-TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD  143 (173)
T ss_pred             CCCCH-HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence            56652 33334456789999999999998753221  12233332     2689999999999965322223323331  


Q ss_pred             ---HcCCeeEEecCccccchhhHHHHHH
Q 023932          174 ---KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       174 ---~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                         ..+..++.+||++|.|++++.+++.
T Consensus       144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         144 KISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             ccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence               1235799999999999999887753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.71  E-value=1.7e-07  Score=89.70  Aligned_cols=90  Identities=17%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-----CCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-----GTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-----g~~vi~iSa  184 (275)
                      +....++.+|++|+|+|+.++.+..+..+...+.  ++|+++|+||+|+. +....++..+.+...     +..++++||
T Consensus       247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA  326 (429)
T TIGR03594       247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA  326 (429)
T ss_pred             HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence            4456789999999999999888777766666543  78999999999998 444344444444321     257999999


Q ss_pred             ccccchhhHHHHHHHHhc
Q 023932          185 QLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~  202 (275)
                      ++|.|++++.+.+.+...
T Consensus       327 ~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       327 LTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999888766543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04124 RabL2 RabL2 subfamily

Probab=98.71  E-value=1.1e-07  Score=78.53  Aligned_cols=96  Identities=16%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCC
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGT  177 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~  177 (275)
                      .||+ ..........++++|++|+|+|..++.+..+. .+...+    .+.|+++|+||+|+.... ..+...+..+.+.
T Consensus        56 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~  133 (161)
T cd04124          56 TAGQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNL  133 (161)
T ss_pred             CCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCC
Confidence            3554 33444445678999999999999776443221 122222    268999999999985432 2223333334457


Q ss_pred             eeEEecCccccchhhHHHHHHHH
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .++.+||++|.|++++.+.+.+.
T Consensus       134 ~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124         134 PLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999999998776543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.71  E-value=3.5e-08  Score=94.71  Aligned_cols=149  Identities=16%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEE--Ee-CCCccccccchhHH------HHHHHHHHHHhhc
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYY--WT-KSLRPVQWYPGHIA------KTEKELKDQLKLM  121 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~~i~~~pG~~~------~~~k~l~~~l~~a  121 (275)
                      .|.+||.  |+-.|+++.++......+-..-.+.++...+-.  +. ..-..+-+.||...      .+..++.+.++++
T Consensus       160 dVglVG~--pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGF--PNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcC--CCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            5666676  334588887666543322222223333332211  11 11122345676532      2345566778899


Q ss_pred             CeEEEEEeCCCCCC--C--CcHHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932          122 DVVIEVRDARIPLS--T--THPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       122 DlVI~VvDar~p~s--~--~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      |++|+|+|+.....  .  ....+...|       .++|.+||+||+|+....+  .+..+....+..++++||+++.|+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e--~l~~l~~~l~~~i~~iSA~tgeGI  315 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE--NLEEFKEKLGPKVFPISALTGQGL  315 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH--HHHHHHHHhCCcEEEEeCCCCCCH
Confidence            99999999864311  1  111222222       2689999999999853321  222222233467899999999999


Q ss_pred             hhHHHHHHHHhch
Q 023932          191 MKLSRLAKALASD  203 (275)
Q Consensus       191 ~~L~~~i~~l~~~  203 (275)
                      ++|.+.+.+...+
T Consensus       316 ~eL~~~L~~~l~~  328 (424)
T PRK12297        316 DELLYAVAELLEE  328 (424)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888766543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.71  E-value=2e-07  Score=89.37  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHHhc--C-CCeEEEEEcccCcCHHHHH----HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQWLG--N-RKRILVLNREDMISMADRN----AWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~~~~----~~~~~~~~  174 (275)
                      .||| ..+.+.+...+..+|++++|+|++.+. .........++.  + +++++|+||+|+.+..+..    +...++..
T Consensus        92 tPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~  170 (411)
T PRK04000         92 APGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG  170 (411)
T ss_pred             CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence            6887 567777777788899999999999875 333333333332  3 4689999999998654322    22222222


Q ss_pred             ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                         .+..++++||++|.|+++|.+.|....+
T Consensus       171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        171 TVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence               1357899999999999999999887543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.70  E-value=5.9e-08  Score=79.45  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=64.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++.+|++++|+|++++.+.  ....+..++     .+.|+++|+||+|+.
T Consensus        44 ~~l~i~D--------~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (160)
T cd04156          44 LSLTVWD--------VGGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP  114 (160)
T ss_pred             eEEEEEE--------CCCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence            3466776        3554 23334444578899999999999876421  122333333     367999999999985


Q ss_pred             CHHHHHHHHHHHH--H----cCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFA--K----QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~--~----~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .....++....+.  +    .+..++++||++|.|++++.+.|.
T Consensus       115 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         115 GALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             cCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence            4221222222221  1    123588999999999999988764

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04157 Arl6 Arl6 subfamily

Probab=98.69  E-value=7.5e-08  Score=78.77  Aligned_cols=102  Identities=14%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-------cCCCeEEEEEccc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNRED  158 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-------~~kp~IlVlNK~D  158 (275)
                      ..+..||        .||+. +........++.+|.+|+|+|++++.+..  ...+..++       .+.|+++|+||+|
T Consensus        45 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D  115 (162)
T cd04157          45 LSFTAFD--------MSGQG-KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD  115 (162)
T ss_pred             EEEEEEE--------CCCCH-hhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence            3456666        46653 33344456789999999999998764321  11222221       1579999999999


Q ss_pred             CcCHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932          159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       159 l~~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      +.......++...+.     .....++.+||++|.|++++.++|.
T Consensus       116 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         116 LPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             ccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            975432222222221     1123578899999999999988764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.69  E-value=2.5e-08  Score=96.36  Aligned_cols=46  Identities=41%  Similarity=0.496  Sum_probs=40.6

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ...+++++++|.||||||||+|+|++.....++++||||||.....
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~  245 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGD  245 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEE
Confidence            3457899999999999999999999988889999999999975443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.68  E-value=1.1e-07  Score=76.94  Aligned_cols=85  Identities=20%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      .......+.++|++++|+|++++.+..+..+.....++|+++|+||+|+.+....     .....+..++.+||+++.|+
T Consensus        71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          71 IERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCH
Confidence            3455567789999999999998777766666555558999999999999865432     22233467999999999999


Q ss_pred             hhHHHHHHHH
Q 023932          191 MKLSRLAKAL  200 (275)
Q Consensus       191 ~~L~~~i~~l  200 (275)
                      ++|.+.|.+.
T Consensus       146 ~~l~~~l~~~  155 (157)
T cd04164         146 DELKEALLEL  155 (157)
T ss_pred             HHHHHHHHHh
Confidence            9998887654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PTZ00099 rab6; Provisional

Probab=98.68  E-value=1e-07  Score=80.85  Aligned_cols=107  Identities=15%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc----CCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~----~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+        ||+ .+........++.+|++|+|+|..++.+..+  ..+...+.    +.|++||.||+||..
T Consensus        29 v~l~iwDt--------~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~   99 (176)
T PTZ00099         29 VRLQLWDT--------AGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD   99 (176)
T ss_pred             EEEEEEEC--------CCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence            56778874        454 3444455567899999999999877533222  22222222    467899999999964


Q ss_pred             HH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          162 MA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       162 ~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ..  ..++........+..++.+||++|.|++++.+.|.+.+.+
T Consensus       100 ~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        100 LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            21  1223333344455678899999999999998888766544

>cd04151 Arl1 Arl1 subfamily

Probab=98.68  E-value=7.8e-08  Score=79.00  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..+.......++.+|++|+|+|+.++.+..  ...+..++     .++|+++|+||+|+.
T Consensus        43 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~  113 (158)
T cd04151          43 LKFQVWD--------LGGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP  113 (158)
T ss_pred             EEEEEEE--------CCCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence            3455666        4665 223333445689999999999987653211  22233332     268999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ......+....+.     ..+.+++++||++|.|++++.+.+.
T Consensus       114 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         114 GALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            4322222222221     1124699999999999999988764

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.67  E-value=9.9e-08  Score=90.82  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=98.7

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCC-------------CCcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHH
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNS-------------NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEK  112 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k  112 (275)
                      .+.-+.|+|.  |+..|+++-|+             |....+-..  .|.--...|...|+....  ..-+.+.-.-..-
T Consensus       177 ~~ikiaiiGr--PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~--~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~  252 (444)
T COG1160         177 DPIKIAIIGR--PNVGKSSLINAILGEERVIVSDIAGTTRDSIDI--EFERDGRKYVLIDTAGIRRKGKITESVEKYSVA  252 (444)
T ss_pred             CceEEEEEeC--CCCCchHHHHHhccCceEEecCCCCccccceee--eEEECCeEEEEEECCCCCcccccccceEEEeeh
Confidence            4567888888  22346665544             333333332  233223345555554332  1222222111234


Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHHHHc-----CCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~-----g~~vi~iS  183 (275)
                      +....++.+|++++|+|++.+++..|..+..+..  +++++||+||-|++..  ...+++...+...     ...++++|
T Consensus       253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            5567889999999999999999999999888875  8999999999999875  3344444444332     14789999


Q ss_pred             CccccchhhHHHHHHHHhc
Q 023932          184 GQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~  202 (275)
                      |++|.|+.+|.+.+.+...
T Consensus       333 A~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             ecCCCChHHHHHHHHHHHH
Confidence            9999999999888776644

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.67  E-value=2.3e-07  Score=88.67  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHH---hcCCCeEEEEEcccCcCHHHHH----HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQW---LGNRKRILVLNREDMISMADRN----AWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~---L~~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~  174 (275)
                      .||| ..+.+.+...+..+|++++|+|++.+. .....+....   +..+++++|+||+|+.+.....    +..+++..
T Consensus        87 tPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~  165 (406)
T TIGR03680        87 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKG  165 (406)
T ss_pred             CCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhh
Confidence            6888 567777778888999999999999765 3332222222   2245789999999998654322    22222222


Q ss_pred             c---CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 Q---GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ~---g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .   +..++++||++|.|+++|.++|....+
T Consensus       166 ~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       166 TVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            1   357899999999999999999887543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.66  E-value=5.2e-08  Score=78.58  Aligned_cols=96  Identities=7%  Similarity=0.008  Sum_probs=63.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~--  173 (275)
                      +||+ ..........+..+|++++|+|+.++....  ...+..++     .++|+++|+||+|+............+.  
T Consensus        51 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  129 (159)
T cd04159          51 LGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK  129 (159)
T ss_pred             CCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence            5665 334445566789999999999997643211  11222322     2679999999999876543333333321  


Q ss_pred             ---HcCCeeEEecCccccchhhHHHHHHH
Q 023932          174 ---KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ---~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                         .....++.+|+++|.|++++.++|.+
T Consensus       130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         130 SITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence               11246899999999999999888754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.66  E-value=1.2e-07  Score=81.10  Aligned_cols=92  Identities=21%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHH---HHHHHHHHHHH---
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYFAK---  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~---~~~~~~~~~~~---  174 (275)
                      .||+ ..+.......++.+|.+++|+|+..........+...+  .++|+++|+||+|+....   ..+++.+.+..   
T Consensus        72 tpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  150 (194)
T cd01891          72 TPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGA  150 (194)
T ss_pred             CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            5776 45666777789999999999999875433222333322  278999999999996421   23344444422   


Q ss_pred             ----cCCeeEEecCccccchhhHHH
Q 023932          175 ----QGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       175 ----~g~~vi~iSak~g~Gi~~L~~  195 (275)
                          .+..++++||++|.|+.++.+
T Consensus       151 ~~~~~~~~iv~~Sa~~g~~~~~~~~  175 (194)
T cd01891         151 TEEQLDFPVLYASAKNGWASLNLED  175 (194)
T ss_pred             ccccCccCEEEeehhcccccccccc
Confidence                246789999999999866643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.66  E-value=3.5e-07  Score=87.86  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-----CCeeEEecCc
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQ  185 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-----g~~vi~iSak  185 (275)
                      +....++.+|++|+|+|+..+.+..+..+..++.  ++|+++|+||+|+.+.....+..+.+...     ...++++||+
T Consensus       248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence            4456789999999999999988877777666654  78999999999998655444444444332     2578999999


Q ss_pred             cccchhhHHHHHHHHh
Q 023932          186 LGMGTMKLSRLAKALA  201 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~  201 (275)
                      +|.|++++.+.+.+..
T Consensus       328 ~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        328 TGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988776544

>cd00880 Era_like Era (E

Probab=98.66  E-value=4.3e-07  Score=72.47  Aligned_cols=112  Identities=17%  Similarity=0.131  Sum_probs=74.4

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHH
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD  164 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~  164 (275)
                      ..++..||+....  ++..........+...+..+|++++|+|+..+.......+....  .+.|.++|+||+|+.....
T Consensus        44 ~~~~~~~Dt~g~~--~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~  121 (163)
T cd00880          44 LGPVVLIDTPGID--EAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE  121 (163)
T ss_pred             CCcEEEEECCCCC--ccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh
Confidence            4567777744311  11111122235666788999999999999987666555422222  3789999999999987665


Q ss_pred             HHHHHH---H--HHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          165 RNAWAT---Y--FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       165 ~~~~~~---~--~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ...+..   .  ....+..++++|++++.|++++.+.+..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            544421   1  11224678999999999999998887653

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.65  E-value=3.7e-08  Score=88.25  Aligned_cols=59  Identities=22%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE------EEeecccccccc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ------FFLLKYHQKCKV  272 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~------~~~~~~~~~~~~  272 (275)
                      .+.+.+|+++|.+|||||||+|+|++.....+++.+++|+..+.+..      +.+.++||+.+-
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~   92 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES   92 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            34578999999999999999999999998899999889998887653      577899988754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.65  E-value=2.3e-07  Score=80.55  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C-CCeEEEEEcccCcCH--HHH----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----NAWAT  170 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~--~~~----~~~~~  170 (275)
                      +-+.||| ..+...+...++.+|++|+|+|+..+..........++.  + .++|+|+||+|+...  ...    .+...
T Consensus        81 liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~  159 (208)
T cd04166          81 IADTPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA  159 (208)
T ss_pred             EEECCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence            3456887 445566677789999999999998876544443333332  4 346778999999742  111    12222


Q ss_pred             HHHHcC---CeeEEecCccccchhhH
Q 023932          171 YFAKQG---TKVIFSNGQLGMGTMKL  193 (275)
Q Consensus       171 ~~~~~g---~~vi~iSak~g~Gi~~L  193 (275)
                      .+.+.+   ..++++||++|.|+.+.
T Consensus       160 ~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         160 FAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHcCCCCceEEEEeCCCCCCCccC
Confidence            233344   34899999999998643

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.64  E-value=2.5e-08  Score=90.59  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=44.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT  273 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~  273 (275)
                      .+..+++++|.||||||||.|.+++.+.+.||..+.|||+-.  -..+..+.-+.||+|
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i--lgi~ts~eTQlvf~D  126 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI--LGIITSGETQLVFYD  126 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee--eEEEecCceEEEEec
Confidence            346799999999999999999999999999999999999863  333333444444433

>cd04112 Rab26 Rab26 subfamily

Probab=98.64  E-value=2.1e-07  Score=79.34  Aligned_cols=101  Identities=10%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-H----HHHHHhc-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-P----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~----~l~~~L~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........+..+|++|+|+|+.+..+..+ .    .+.++.. +.|+++|+||+|+.....  .++.......
T Consensus        57 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~  135 (191)
T cd04112          57 TAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE  135 (191)
T ss_pred             CCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH
Confidence            5665 3344444567889999999999976532211 1    1111111 579999999999963221  1222233334


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHhchh
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALASDV  204 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~  204 (275)
                      .+..++.+||++|.|+++|.+.+.+...+.
T Consensus       136 ~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         136 YGVPFMETSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            567899999999999999998887665443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.64  E-value=1.3e-07  Score=78.20  Aligned_cols=102  Identities=11%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||.        ||+ .+.......+++++|++|+|+|+.+..+.  ....+.+.+.     +.|++|++||+|+.
T Consensus        44 ~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  114 (159)
T cd04150          44 ISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP  114 (159)
T ss_pred             EEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence            44677773        454 33444445678999999999999764321  1222333332     47999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .....++....+.     .....++.+||++|.|++++.++|.
T Consensus       115 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         115 NAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence            4322222222221     1123467899999999999987764

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG1249 consensus Predicted GTPases [General function prediction only]

Probab=98.63  E-value=6.2e-08  Score=93.36  Aligned_cols=141  Identities=21%  Similarity=0.252  Sum_probs=97.5

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc------------C----
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ------------G----  176 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~------------g----  176 (275)
                      ...+..++--++..|+|..+.+...++.+...+.....++..||+|+.+....--....+...            +    
T Consensus       103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~  182 (572)
T KOG1249|consen  103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD  182 (572)
T ss_pred             hhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence            334445666678888898877777777777777766789999999998765422222222211            0    


Q ss_pred             ---CeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc-----------
Q 023932          177 ---TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-----------  242 (275)
Q Consensus       177 ---~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~-----------  242 (275)
                         ..+..+|++++.|+++|.-.+...-.       -+      =.|..+|..||||||++|+|++.+-           
T Consensus       183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~------Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~  249 (572)
T KOG1249|consen  183 FDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FR------GDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDR  249 (572)
T ss_pred             cchhhhhhhhhhhcccHHHHHHHhhheee-------cc------CceeeeeecccchhhHHHHHhhhccccccccceeee
Confidence               12456788999998887665543321       11      1389999999999999999997653           


Q ss_pred             cccCCCCcccccceEEEEEEeecc
Q 023932          243 CPAAPRPGVTRVLKYVSQFFLLKY  266 (275)
Q Consensus       243 ~~vs~~pGtTr~~~~v~~~~~~~~  266 (275)
                      +.+++.||||....-+..+...++
T Consensus       250 aT~~dwpgTtlsllkfpv~~p~~~  273 (572)
T KOG1249|consen  250 ATISDWPGTTLSLLKFPVLVPHPY  273 (572)
T ss_pred             eecccCCccccchhhCccccccch
Confidence            468999999988876666554443

>cd01862 Rab7 Rab7 subfamily

Probab=98.63  E-value=2.7e-07  Score=76.19  Aligned_cols=98  Identities=11%  Similarity=-0.000  Sum_probs=65.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc-----CCCeEEEEEcccCcCHH--HHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG-----NRKRILVLNREDMISMA--DRNAWAT  170 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~  170 (275)
                      .||+. .........++++|++|+|+|+.++.+..+. .    +...+.     ++|+++|+||+|+....  ..+....
T Consensus        56 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  134 (172)
T cd01862          56 TAGQE-RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ  134 (172)
T ss_pred             CCChH-HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence            56653 3444455678999999999999876432211 1    111122     57999999999997321  1223333


Q ss_pred             HHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932          171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       171 ~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +....+ ..++.+|+++|.|++++.+.+.+..
T Consensus       135 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  166 (172)
T cd01862         135 WCQSNGNIPYFETSAKEAINVEQAFETIARKA  166 (172)
T ss_pred             HHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            344444 6899999999999999988876544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PTZ00258 GTP-binding protein; Provisional

Probab=98.63  E-value=2.9e-08  Score=94.09  Aligned_cols=41  Identities=41%  Similarity=0.540  Sum_probs=37.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ..++++|||.||||||||+|+|.+.+ +.+++.||||++...
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~   60 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNT   60 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceE
Confidence            46799999999999999999998766 799999999998765

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.62  E-value=3.8e-07  Score=74.91  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||+        ||+ ..........++++|++++|+|..++.+..  .+..|+       .+.|+++|+||+|+.
T Consensus        52 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  120 (164)
T cd04101          52 VELFIFDS--------AGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDLA  120 (164)
T ss_pred             EEEEEEEC--------CCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            34667773        454 333344556789999999999987653321  122221       157999999999996


Q ss_pred             CHHHHH--HHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~~~--~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +..+..  ....+....+..++.+||+++.|++++.+.+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101         121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence            543221  122222334567899999999999999887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.62  E-value=2.9e-07  Score=74.80  Aligned_cols=81  Identities=19%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      +.+|++|+|+|++.+..  ...+...+  .++|+++|+||+|+............+ ...+..++++|+.++.|++++.+
T Consensus        73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            58999999999987532  22232222  278999999999997653332222333 23467899999999999999988


Q ss_pred             HHHHHh
Q 023932          196 LAKALA  201 (275)
Q Consensus       196 ~i~~l~  201 (275)
                      .+..++
T Consensus       151 ~l~~~~  156 (158)
T cd01879         151 AIAELA  156 (158)
T ss_pred             HHHHHh
Confidence            877654

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=98.62  E-value=3e-07  Score=78.64  Aligned_cols=84  Identities=14%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             HhhcCeEEEEEeCCCCCCC-----------CcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHc------C
Q 023932          118 LKLMDVVIEVRDARIPLST-----------THPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQ------G  176 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~-----------~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~------g  176 (275)
                      +..++++++|+|+......           .+..+...+.  ++|+++|+||+|+....  ..+++.+.+.-.      +
T Consensus        88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  167 (201)
T PRK04213         88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQ  167 (201)
T ss_pred             hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccC
Confidence            3457899999998643211           1223344433  78999999999997543  222222222110      1


Q ss_pred             CeeEEecCccccchhhHHHHHHHHhc
Q 023932          177 TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       177 ~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..++++||++| |++++.++|.+...
T Consensus       168 ~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        168 DIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             CcEEEEecccC-CHHHHHHHHHHhhc
Confidence            24799999999 99999988876543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.61  E-value=2.1e-07  Score=94.65  Aligned_cols=99  Identities=19%  Similarity=0.138  Sum_probs=68.1

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHH----H
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYF----A  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~----~  173 (275)
                      +.||| ..+.......+..+|++|+|+|+.++......+....+.  +.|+|+++||+|+....  .....+..+    .
T Consensus       301 DTPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e  379 (742)
T CHL00189        301 DTPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPE  379 (742)
T ss_pred             ECCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchH
Confidence            46898 455555556889999999999998765444333333333  78999999999997532  222222111    1


Q ss_pred             HcC--CeeEEecCccccchhhHHHHHHHHh
Q 023932          174 KQG--TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+  ..++++||++|.|+++|.+.|..+.
T Consensus       380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        380 KWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            122  4689999999999999998877654

>PRK15494 era GTPase Era; Provisional

Probab=98.61  E-value=4.4e-08  Score=91.55  Aligned_cols=53  Identities=30%  Similarity=0.449  Sum_probs=42.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ..+++++|.||||||||+|+|++.+...+++.|+|||+...-.      .+.+.+++|.
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~  110 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI  110 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCc
Confidence            4689999999999999999999988888999999999864321      2345555554

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.61  E-value=2.7e-07  Score=75.56  Aligned_cols=96  Identities=14%  Similarity=-0.025  Sum_probs=62.5

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      .||+ .+........++.+|.+++|+|+.++.+....  .+..+   .  .+.|+++|+||+|+.....  .+...+...
T Consensus        57 t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~  135 (164)
T cd04145          57 TAGQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR  135 (164)
T ss_pred             CCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH
Confidence            4554 33444455678999999999999875332111  11111   1  1579999999999865321  122223334


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHH
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..+..++.+||++|.|++++.+.+..
T Consensus       136 ~~~~~~~~~Sa~~~~~i~~l~~~l~~  161 (164)
T cd04145         136 KLKIPYIETSAKDRLNVDKAFHDLVR  161 (164)
T ss_pred             HcCCcEEEeeCCCCCCHHHHHHHHHH
Confidence            45678999999999999999877654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PRK11058 GTPase HflX; Provisional

Probab=98.61  E-value=7.9e-08  Score=92.44  Aligned_cols=51  Identities=29%  Similarity=0.265  Sum_probs=41.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE-------EEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ-------FFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~-------~~~~~~~~~  269 (275)
                      .+|+++|+||||||||+|+|++.+.. +++.||+|+|......       +.+.+++|+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~  255 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGF  255 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence            58999999999999999999987744 8899999999876442       345566665

>cd04158 ARD1 ARD1 subfamily

Probab=98.61  E-value=1.5e-07  Score=78.55  Aligned_cols=105  Identities=14%  Similarity=0.131  Sum_probs=65.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..|+        .||+ .+.......+++.+|.+++|+|+.++.+.  ....+..++.     +.|++||.||+|+.
T Consensus        43 ~~i~l~D--------t~G~-~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  113 (169)
T cd04158          43 LKFTIWD--------VGGK-HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA  113 (169)
T ss_pred             EEEEEEE--------CCCC-hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence            4456666        4554 23334445678999999999999765322  2223333332     47999999999986


Q ss_pred             CHHHHHHHHHHHH--Hc----CCeeEEecCccccchhhHHHHHHHHh
Q 023932          161 SMADRNAWATYFA--KQ----GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       161 ~~~~~~~~~~~~~--~~----g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .....++..+++.  +.    ...++.+||++|.|++++.++|.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158         114 GALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             cCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            4322222222221  11    12577889999999999988876543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.61  E-value=3.1e-07  Score=75.23  Aligned_cols=101  Identities=14%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~  160 (275)
                      .++..||        .||+ .+........++.+|.+++|+|+.++.+..  .+..|+       .+.|+++|+||+|+.
T Consensus        51 ~~~~i~D--------~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~  119 (162)
T cd04106          51 VRLMLWD--------TAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLL  119 (162)
T ss_pred             EEEEEee--------CCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence            3466666        4564 344444556789999999999987654322  222222       268999999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ....  .++........+.+++.+|++++.|++++.+.|..
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5422  12333344455778999999999999999887653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.61  E-value=2.8e-07  Score=75.37  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=66.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~  172 (275)
                      .||+ ..........++.+|++++|+|++++.+...  +..|+        .+.|+++|+||+|+....  ..+...+..
T Consensus        56 ~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~  132 (164)
T smart00175       56 TAGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA  132 (164)
T ss_pred             CCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence            4665 3444555667899999999999987644322  22222        257999999999987532  222333344


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+.+..++.+|++++.|++++.+.+.+.
T Consensus       133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175      133 EEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            4556789999999999999998877654

Rab GTPases are implicated in vesicle trafficking.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.60  E-value=1.6e-07  Score=85.65  Aligned_cols=148  Identities=17%  Similarity=0.126  Sum_probs=95.7

Q ss_pred             eeeEecC-CCCCCCCCCCCCCCCcchhhHHhhcccccCcc--EEEEeCC-CccccccchhH-----HHH-HHHHHHHHhh
Q 023932           51 IIQTVGG-KQSSWHGGNSNNSNGSIEAYEEECDWADLDAD--LYYWTKS-LRPVQWYPGHI-----AKT-EKELKDQLKL  120 (275)
Q Consensus        51 ~~~~vg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~~~i~~~pG~~-----~~~-~k~l~~~l~~  120 (275)
                      +++-||- ..|+=.|+|++++.-...++-..=.|-++...  .+..++. ...+.+.||.+     .++ --++.+.+++
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            5666676 66777799999988877765555555555442  2222222 25677888753     333 3477889999


Q ss_pred             cCeEEEEEeCCCCCC---CCcH-HHHH----H---hcCCCeEEEEEcccCcCHHHHHHHHHHHHH-c-CCeeEEecCccc
Q 023932          121 MDVVIEVRDARIPLS---TTHP-LMDQ----W---LGNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLG  187 (275)
Q Consensus       121 aDlVI~VvDar~p~s---~~d~-~l~~----~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~-g~~vi~iSak~g  187 (275)
                      |+.++||+|...+..   .... .+..    |   |.++|.+||+||+|+...++  ..++.+.+ . +..++++||+++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999986621   1111 1111    1   33789999999999963321  22222322 2 235999999999


Q ss_pred             cchhhHHHHHHHH
Q 023932          188 MGTMKLSRLAKAL  200 (275)
Q Consensus       188 ~Gi~~L~~~i~~l  200 (275)
                      +|+.+|++.+..+
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999998877653

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.60  E-value=2.8e-07  Score=89.24  Aligned_cols=86  Identities=27%  Similarity=0.335  Sum_probs=65.0

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      .+...+.+.++|++++|+|+.++.+..+..+.....++|+++|+||+|+.+.....      ...+..++.+||++|.|+
T Consensus       285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        285 IERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCH
Confidence            45567789999999999999887665544433334478999999999997643321      223457899999999999


Q ss_pred             hhHHHHHHHHhc
Q 023932          191 MKLSRLAKALAS  202 (275)
Q Consensus       191 ~~L~~~i~~l~~  202 (275)
                      ++|.+.+.+...
T Consensus       359 ~~L~~~L~~~l~  370 (449)
T PRK05291        359 DELREAIKELAF  370 (449)
T ss_pred             HHHHHHHHHHHh
Confidence            999998877654

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.59  E-value=2e-07  Score=79.16  Aligned_cols=104  Identities=11%  Similarity=0.082  Sum_probs=65.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .........+++.+|++|+|+|+.++.+.  ....+.+++.     +.|++||+||.|+.
T Consensus        61 ~~~~l~D--------~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~  131 (182)
T PTZ00133         61 LKFTMWD--------VGGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP  131 (182)
T ss_pred             EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence            4466676        4555 33444445678999999999999764321  1223333332     47999999999986


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .....++....+.     .....++.+||++|.|++++.++|.+.
T Consensus       132 ~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~  176 (182)
T PTZ00133        132 NAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN  176 (182)
T ss_pred             CCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence            4322222222221     111235578999999999998887654

>cd04120 Rab12 Rab12 subfamily

Probab=98.59  E-value=3.1e-07  Score=79.74  Aligned_cols=104  Identities=11%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+.        |. .++......+++++|++|+|+|..++.+..+. .+...+     .+.|+++|.||+|+..
T Consensus        49 v~l~iwDta--------Gq-e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~  119 (202)
T cd04120          49 IRLQIWDTA--------GQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET  119 (202)
T ss_pred             EEEEEEeCC--------Cc-hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence            566778743        33 34444455678999999999999876443321 111112     1579999999999964


Q ss_pred             HHHH--HHHHHHHHHc-CCeeEEecCccccchhhHHHHHHHH
Q 023932          162 MADR--NAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       162 ~~~~--~~~~~~~~~~-g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ..++  ....++..+. +..++.+||++|.|++++.+.+...
T Consensus       120 ~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~  161 (202)
T cd04120         120 DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD  161 (202)
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            3221  1222222232 5678999999999999988776543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.59  E-value=6.2e-07  Score=85.77  Aligned_cols=120  Identities=18%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             CcchhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---hc
Q 023932           72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---LG  146 (275)
Q Consensus        72 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~---L~  146 (275)
                      +.+....|++..-.++..+..+.....  .+-+.||| .++.+.+...+..+|++|+|+|+..+......+...+   +.
T Consensus        54 ~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~  132 (406)
T TIGR02034        54 LVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG  132 (406)
T ss_pred             eccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC
Confidence            345555566655555554444432222  23456998 5677777778899999999999998876655443333   33


Q ss_pred             CCCeEEEEEcccCcCHH--HHHHHHH----HHHHcC---CeeEEecCccccchhh
Q 023932          147 NRKRILVLNREDMISMA--DRNAWAT----YFAKQG---TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       147 ~kp~IlVlNK~Dl~~~~--~~~~~~~----~~~~~g---~~vi~iSak~g~Gi~~  192 (275)
                      .+++++++||+|+.+..  ..++..+    ++.+.+   ..++++||++|.|+++
T Consensus       133 ~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       133 IRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             CCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            44678899999997532  1122222    223333   3589999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01865 Rab3 Rab3 subfamily

Probab=98.58  E-value=5.3e-07  Score=74.65  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=66.8

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI  160 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~  160 (275)
                      .+..||        .||+ .+........++.+|.+++|+|..++.+..  .+..|+        .+.|+++|.||+|+.
T Consensus        51 ~~~l~D--------t~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~  119 (165)
T cd01865          51 KLQIWD--------TAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDME  119 (165)
T ss_pred             EEEEEE--------CCCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence            466776        3554 333444456789999999999987653221  222222        156899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ....  .+...+.....+..++.+||++|.|+++|.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865         120 DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5321  122233334456789999999999999998876554

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=98.58  E-value=4.5e-07  Score=75.87  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=68.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .+........++++|++++|+|+.++.+..+. .+...+      .+.|+++|.||+|+.
T Consensus        63 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~  133 (180)
T cd04127          63 IHLQLWD--------TAGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE  133 (180)
T ss_pred             EEEEEEe--------CCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence            3466777        3554 44555556778999999999999865433221 111111      156899999999996


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ....  .++...+..+.+..++.+||++|.|++++.+.+.+.
T Consensus       134 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~  175 (180)
T cd04127         134 DQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL  175 (180)
T ss_pred             hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            4321  122333344456789999999999999998877543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.58  E-value=9.4e-08  Score=81.10  Aligned_cols=55  Identities=29%  Similarity=0.488  Sum_probs=45.7

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK  269 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~  269 (275)
                      +...+|+++|.+|||||||||+|++.. ...+++.+|+|++++++.   .+.+.+++|+
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~   80 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGY   80 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCC
Confidence            346789999999999999999999875 678899999999988766   3566777763

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.58  E-value=2.2e-07  Score=78.86  Aligned_cols=96  Identities=14%  Similarity=0.046  Sum_probs=62.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----cCCCeEEEEEcccCcC---HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMIS---MADRNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L-----~~kp~IlVlNK~Dl~~---~~~~~~~~~~~  172 (275)
                      .||+. ........+++++|.+++|+|++++...  ....+.+++     .++|+++|+||+|+..   .+++.+.+...
T Consensus        68 ~~G~~-~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~  146 (184)
T smart00178       68 LGGHQ-QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLT  146 (184)
T ss_pred             CCCCH-HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCC
Confidence            56653 3334445678999999999999875321  222333333     3689999999999853   33333322211


Q ss_pred             HH---------cCCeeEEecCccccchhhHHHHHHH
Q 023932          173 AK---------QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       173 ~~---------~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..         ....++.+||++|.|++++.++|.+
T Consensus       147 ~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      147 NTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence            10         1235899999999999999988753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.57  E-value=4.6e-07  Score=74.82  Aligned_cols=95  Identities=15%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~  172 (275)
                      .||+ .+........++++|++|+|+|+.++.+..  .+..|+        .+.|+++|.||+|+.....  .++...+.
T Consensus        58 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~  134 (166)
T cd01869          58 TAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA  134 (166)
T ss_pred             CCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH
Confidence            5665 344445556789999999999997653221  222222        2579999999999864321  12222333


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ...+..++++||++|.|++++.+.+.+.
T Consensus       135 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  162 (166)
T cd01869         135 DELGIPFLETSAKNATNVEQAFMTMARE  162 (166)
T ss_pred             HHcCCeEEEEECCCCcCHHHHHHHHHHH
Confidence            3456789999999999999998776543

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.57  E-value=3.7e-07  Score=78.40  Aligned_cols=105  Identities=14%  Similarity=0.128  Sum_probs=68.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----cCCCeEEEEEcc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRE  157 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L-----~~kp~IlVlNK~  157 (275)
                      ..+..||        +||+ .........+++++|++|+|+|..++.+....     .+...+     .+.|++||+||+
T Consensus        50 ~~l~l~D--------t~G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~  120 (201)
T cd04107          50 VRLQLWD--------IAGQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKC  120 (201)
T ss_pred             EEEEEEE--------CCCc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECC
Confidence            3466776        4554 33334445678999999999999876443221     122211     256999999999


Q ss_pred             cCcC--HHHHHHHHHHHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932          158 DMIS--MADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       158 Dl~~--~~~~~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      |+..  ....++..++....+ ..++.+||++|.|++++.+.+.+..
T Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         121 DLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             CcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9963  112233334444555 5799999999999999988776544

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.57  E-value=5.4e-07  Score=90.11  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHh-cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYFAK-QGT--  177 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l-~~~L-~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~--  177 (275)
                      .||| ..+.......++.+|.+|+|+|+.++........ ..++ .+.|+++|+||+|+..... .+..+.+.+ .+.  
T Consensus        77 TPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~~~  154 (595)
T TIGR01393        77 TPGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP-ERVKKEIEEVIGLDA  154 (595)
T ss_pred             CCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH-HHHHHHHHHHhCCCc
Confidence            5788 4567777888999999999999998765544322 2222 2789999999999864321 111122221 233  


Q ss_pred             -eeEEecCccccchhhHHHHHHHHhc
Q 023932          178 -KVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       178 -~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                       +++++||++|.|+++|.+.|.+..+
T Consensus       155 ~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       155 SEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence             4899999999999999998876654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.57  E-value=3.5e-07  Score=77.53  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcC
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMIS  161 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~  161 (275)
                      .+..||+        ||+ ..+.......++++|++++|+|+.++.+..  ...+.+++     .++|+++|+||+|+..
T Consensus        53 ~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          53 TFHFWDV--------GGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN  123 (183)
T ss_pred             EEEEEEC--------CCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence            4666763        454 233333345678999999999987752211  11222222     2689999999999864


Q ss_pred             HHHHHHHHHHH--HHc----CCeeEEecCccccchhhHHHHHHHHh
Q 023932          162 MADRNAWATYF--AKQ----GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~~~~~~~~~~~--~~~----g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ....+.....+  ...    +..++++||++|.|++++.+.|.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         124 ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence            32212221111  111    23578999999999999988776544

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.57  E-value=4.6e-07  Score=92.47  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=64.4

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-----CCeeEEecCccc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQLG  187 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-----g~~vi~iSak~g  187 (275)
                      ...++.+|++++|+|+..+.+..+..+...+.  ++|+++|+||+|+.+....+.....+...     ..+++++||++|
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg  606 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG  606 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence            35578999999999999887776665555443  78999999999998654333332223221     246789999999


Q ss_pred             cchhhHHHHHHHHhc
Q 023932          188 MGTMKLSRLAKALAS  202 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~  202 (275)
                      .|+++|.+.+.+...
T Consensus       607 ~gv~~L~~~i~~~~~  621 (712)
T PRK09518        607 WHTNRLAPAMQEALE  621 (712)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999888766544

>cd04122 Rab14 Rab14 subfamily

Probab=98.56  E-value=5.8e-07  Score=74.39  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=66.4

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      ..+..||        .||+ .+........++++|.+|+|+|..++.+..  .+..|+.        +.|+++|.||+|+
T Consensus        51 ~~l~i~D--------t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl  119 (166)
T cd04122          51 IKLQIWD--------TAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADL  119 (166)
T ss_pred             EEEEEEE--------CCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            3466776        4554 344444566789999999999998764322  2223321        4689999999999


Q ss_pred             cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ....+  .++......+.+..++.+||++|.|++++...+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         120 EAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             ccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            65422  1233333444567899999999999998765544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.56  E-value=3.1e-07  Score=75.09  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        +||+. .........+..+|++++|+|+..+.+..  ...+..++.     +.|+++|+||+|+.
T Consensus        43 ~~~~i~D--------~~G~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~  113 (158)
T cd00878          43 VSFTVWD--------VGGQD-KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP  113 (158)
T ss_pred             EEEEEEE--------CCCCh-hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence            4577777        56653 33334456779999999999998753221  122222222     67999999999997


Q ss_pred             CHHHHHHHHHHHHH-----cCCeeEEecCccccchhhHHHHHH
Q 023932          161 SMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~~~~-----~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .....++..+.+..     ....++.+||++|.|++++.+.|.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         114 GALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             cccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            64422233232221     124689999999999998877654

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.56  E-value=8.8e-07  Score=86.31  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHH----HHHHc-CCeeEEecCcccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAKQ-GTKVIFSNGQLGM  188 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~----~~~~~-g~~vi~iSak~g~  188 (275)
                      ..++.+|++++|+|+.++.+..+..+...+.  ++|+|+|+||+|+...........    .+... ...++++||++|.
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~  368 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR  368 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence            4678999999999999887766665555443  789999999999976432222111    22221 2468999999999


Q ss_pred             chhhHHHHHHHHhc
Q 023932          189 GTMKLSRLAKALAS  202 (275)
Q Consensus       189 Gi~~L~~~i~~l~~  202 (275)
                      |+++|.+.+.+...
T Consensus       369 gv~~lf~~i~~~~~  382 (472)
T PRK03003        369 AVDKLVPALETALE  382 (472)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888776553

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.56  E-value=2e-07  Score=77.22  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=59.3

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCC-----CCCc------HHHHHH--------hcCCCeEEEEEcccCcCHHHHHHHH--H
Q 023932          112 KELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVLNREDMISMADRNAWA--T  170 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~-----s~~d------~~l~~~--------L~~kp~IlVlNK~Dl~~~~~~~~~~--~  170 (275)
                      +++...+..+|++++|+|+.++.     ...+      ..+...        +.++|+++|+||+|+........+.  .
T Consensus        66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~  145 (176)
T cd01881          66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE  145 (176)
T ss_pred             HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH
Confidence            34556678899999999998763     1111      011111        1368999999999998765544431  1


Q ss_pred             HHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       171 ~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .....+..++.+||+++.|++++.+.+..
T Consensus       146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         146 LALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            12223457999999999999999887643

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01864 Rab19 Rab19 subfamily

Probab=98.56  E-value=4.5e-07  Score=74.89  Aligned_cols=96  Identities=15%  Similarity=0.062  Sum_probs=62.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      +||+ ..........++.+|++++|+|+.++.+... ..+...+     .+.|+++|.||+|+....+  .+......++
T Consensus        59 ~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  137 (165)
T cd01864          59 TAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK  137 (165)
T ss_pred             CCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            6776 4444445667889999999999987643221 1121111     1568999999999964421  1222233333


Q ss_pred             cC-CeeEEecCccccchhhHHHHHHH
Q 023932          175 QG-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ~g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+ ..++++||++|.|++++.+.+.+
T Consensus       138 ~~~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         138 NGMLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34 36899999999999998877653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.56  E-value=3.6e-07  Score=79.14  Aligned_cols=104  Identities=12%  Similarity=0.005  Sum_probs=67.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhcCCCeEEEEEcccCcCH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISM  162 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~~kp~IlVlNK~Dl~~~  162 (275)
                      ..+.+||+.        |. .++......+++.+|++|+|+|..+..+.... .    +.+...+.|++||.||+|+...
T Consensus        44 ~~l~iwDt~--------G~-e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~  114 (200)
T smart00176       44 IRFNVWDTA--------GQ-EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR  114 (200)
T ss_pred             EEEEEEECC--------Cc-hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence            467778743        43 33333334578999999999999876433221 1    1111236799999999998543


Q ss_pred             HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ....+...+....+..++.+||++|.|++++.+++...
T Consensus       115 ~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176      115 KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             cCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            21112223334456789999999999999998877644

Ran is involved in the active transport of proteins through nuclear pores.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.56  E-value=6.8e-07  Score=89.51  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-h-cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC--
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYFAK-QGT--  177 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-L-~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~--  177 (275)
                      .||| ..+.......++.+|.+|+|+|++.+..........+ . .+.|+++|+||+|+..... ....+.+.+ .+.  
T Consensus        81 TPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~  158 (600)
T PRK05433         81 TPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDA  158 (600)
T ss_pred             CCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCc
Confidence            5888 4566677788999999999999998765543322222 2 2789999999999864321 111222222 233  


Q ss_pred             -eeEEecCccccchhhHHHHHHHHhc
Q 023932          178 -KVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       178 -~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                       +++++||++|.|+++|.+.|.+..+
T Consensus       159 ~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        159 SDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence             4899999999999999998876654

>cd00154 Rab Rab family

Probab=98.55  E-value=6.4e-07  Score=72.01  Aligned_cols=95  Identities=16%  Similarity=0.040  Sum_probs=63.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-c----CCCeEEEEEcccCc-CHH-HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-G----NRKRILVLNREDMI-SMA-DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-~----~kp~IlVlNK~Dl~-~~~-~~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++++|+|+.++.+... ..+...+ .    +.|+++|+||+|+. ... ..+...+...+
T Consensus        56 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  134 (159)
T cd00154          56 TAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE  134 (159)
T ss_pred             cCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH
Confidence            5676 3344456667899999999999987432111 1111111 1    47999999999996 221 22333344444


Q ss_pred             cCCeeEEecCccccchhhHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .+..++.+|++++.|++++.++|.
T Consensus       135 ~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         135 NGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cCCeEEEEecCCCCCHHHHHHHHh
Confidence            567899999999999999887753

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.55  E-value=5.6e-07  Score=73.48  Aligned_cols=103  Identities=15%  Similarity=-0.008  Sum_probs=67.5

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcC
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMIS  161 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~  161 (275)
                      .+..|+        .||+ ..........++.+|.+++|+|..++.+..  ...+..++     .++|+++|+||+|+..
T Consensus        49 ~~~i~D--------~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~  119 (164)
T cd04139          49 QLNILD--------TAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED  119 (164)
T ss_pred             EEEEEE--------CCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence            456666        3554 333344456789999999999987653211  12222222     2689999999999976


Q ss_pred             H--HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          162 M--ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       162 ~--~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .  .............+..++.+||++|.|++++.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (164)
T cd04139         120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE  160 (164)
T ss_pred             ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            2  12233333444456789999999999999998876543

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01861 Rab6 Rab6 subfamily

Probab=98.55  E-value=4.1e-07  Score=74.37  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc----CCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      +||+ .+........++.+|++|+|+|+.++.+..+  ..+..+..    +.|+++|+||+|+....  ..++.......
T Consensus        56 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~  134 (161)
T cd01861          56 TAGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE  134 (161)
T ss_pred             CCCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH
Confidence            5665 3445556677899999999999976533221  12222221    37999999999995322  11222333334


Q ss_pred             cCCeeEEecCccccchhhHHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+..++.+||+++.|++++.+.+.+
T Consensus       135 ~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         135 LNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             hCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            5678999999999999999888764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.55  E-value=8.3e-07  Score=84.54  Aligned_cols=88  Identities=19%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHHHHH-----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATY  171 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~~~~-----~~~~~  171 (275)
                      +-+.||| .++.+.+...+..+|.+++|+|++.+......+...++.  +.|.+ +++||+|+.+..+..     +..++
T Consensus        79 liDtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~  157 (394)
T TIGR00485        79 HVDCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             EEECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence            3457999 567777777788999999999999876555444444443  67766 689999998654321     23333


Q ss_pred             HHHcC-----CeeEEecCcccc
Q 023932          172 FAKQG-----TKVIFSNGQLGM  188 (275)
Q Consensus       172 ~~~~g-----~~vi~iSak~g~  188 (275)
                      +.+.+     ..++++||.+|.
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       158 LSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHhcCCCccCccEEECcccccc
Confidence            44333     578999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.55  E-value=5.6e-07  Score=73.64  Aligned_cols=103  Identities=16%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh------cCCCeEEEEEc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL------GNRKRILVLNR  156 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L------~~kp~IlVlNK  156 (275)
                      ..+..|++        ||+ ..........++.+|++|+|+|.+++.+...  .   .+..+.      .+.|+++|.||
T Consensus        49 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  119 (168)
T cd04119          49 VRVNFFDL--------SGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK  119 (168)
T ss_pred             EEEEEEEC--------Ccc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence            45667763        444 2333444556789999999999987533211  1   122222      14689999999


Q ss_pred             ccCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          157 EDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       157 ~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +|+....  ..++...+..+.+..++.+||++|.|++++.+.|.+
T Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  164 (168)
T cd04119         120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS  164 (168)
T ss_pred             hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            9997321  122222334445678999999999999999887654

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.54  E-value=1.2e-07  Score=80.00  Aligned_cols=54  Identities=31%  Similarity=0.516  Sum_probs=45.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~  269 (275)
                      ...+++|+|.+|||||||+|+|.+.. ...+++.+|+|++..++.   .+.+.+++|+
T Consensus        17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~   74 (179)
T TIGR03598        17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGY   74 (179)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCC
Confidence            45689999999999999999999875 577899999999988765   3567777774

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.54  E-value=7e-08  Score=81.56  Aligned_cols=83  Identities=16%  Similarity=0.180  Sum_probs=57.0

Q ss_pred             HHhhcCeEEEEEeCCCCCC--CCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH------HcCCeeEEec
Q 023932          117 QLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSN  183 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s--~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~------~~g~~vi~iS  183 (275)
                      ++.++|.||||+|+.+...  .....+.+++.     ++|++|++||.|+......++....+.      +....++.+|
T Consensus        78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s  157 (175)
T PF00025_consen   78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS  157 (175)
T ss_dssp             GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred             eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence            6789999999999986421  11223444433     689999999999875433333333332      1234688999


Q ss_pred             CccccchhhHHHHHHH
Q 023932          184 GQLGMGTMKLSRLAKA  199 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~  199 (275)
                      |.+|.|+.+..++|.+
T Consensus       158 a~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  158 AKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             TTTTBTHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHh
Confidence            9999999998888754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK00089 era GTPase Era; Reviewed

Probab=98.54  E-value=7.3e-08  Score=87.75  Aligned_cols=52  Identities=33%  Similarity=0.459  Sum_probs=42.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE------EEEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV------SQFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v------~~~~~~~~~~~  269 (275)
                      -.|+++|.||||||||+|+|++.+.+.+++.|+|||+...-      ..+.+.+++|.
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~   63 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGI   63 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCC
Confidence            35899999999999999999999988999999999986421      13566677764

>cd04128 Spg1 Spg1p

Probab=98.54  E-value=3.8e-07  Score=77.52  Aligned_cols=105  Identities=14%  Similarity=0.086  Sum_probs=64.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc---CCCeEEEEEcccCcC-
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG---NRKRILVLNREDMIS-  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~---~kp~IlVlNK~Dl~~-  161 (275)
                      ..+.+||...        . ..........++++|++++|+|..++.+..+  ..+.....   ....++|.||+|+.. 
T Consensus        49 ~~l~iwDt~G--------~-~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~  119 (182)
T cd04128          49 ITFSIWDLGG--------Q-REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFAD  119 (182)
T ss_pred             EEEEEEeCCC--------c-hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence            4577887443        2 2222333346799999999999987644332  11222211   233478999999952 


Q ss_pred             --HHH---HH-HHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          162 --MAD---RN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 --~~~---~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                        ..+   .. +..++....+..++++||++|.|++++.+.+.+..
T Consensus       120 ~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l  165 (182)
T cd04128         120 LPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             ccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence              111   11 12222334456789999999999999988776544

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.54  E-value=6.2e-07  Score=75.15  Aligned_cols=107  Identities=16%  Similarity=0.076  Sum_probs=67.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+.+||        .||. .+........++.+|++++|+|+.++.+..  ...+..++.     +.|+++|.||+|+.
T Consensus        49 ~~l~i~D--------t~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~  119 (170)
T cd04108          49 FSLQLWD--------TAGQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS  119 (170)
T ss_pred             EEEEEEe--------CCCh-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence            3466676        3444 334444456689999999999997642221  111222222     24589999999986


Q ss_pred             CHHHH---H-HHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          161 SMADR---N-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       161 ~~~~~---~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      +..+.   . +......+.+..++.+||++|.|++++.+.+..++.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            54321   1 1122233445678999999999999999888776543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.54  E-value=3e-07  Score=76.64  Aligned_cols=85  Identities=12%  Similarity=-0.047  Sum_probs=57.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HHHHH----hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQW----LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~----L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi  190 (275)
                      ..+..+|++|+|+|..++.+.... .+...    ..+.|+++|.||+|+.......+..++....+..++.+||++|.|+
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  147 (166)
T cd00877          68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF  147 (166)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence            456889999999999875433221 11111    2268999999999997332212222333344568999999999999


Q ss_pred             hhHHHHHHHH
Q 023932          191 MKLSRLAKAL  200 (275)
Q Consensus       191 ~~L~~~i~~l  200 (275)
                      +++.+.+.+.
T Consensus       148 ~~~f~~l~~~  157 (166)
T cd00877         148 EKPFLWLARK  157 (166)
T ss_pred             HHHHHHHHHH
Confidence            9998877644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04121 Rab40 Rab40 subfamily

Probab=98.54  E-value=6.1e-07  Score=77.01  Aligned_cols=93  Identities=13%  Similarity=0.020  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeE
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVI  180 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi  180 (275)
                      ..........++.+|.+|+|+|..++.+..+..     +.....+.|+|||.||+|+....  ..++...+.++.+..++
T Consensus        66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~  145 (189)
T cd04121          66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF  145 (189)
T ss_pred             HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence            334444456679999999999998764443221     11112267999999999985421  12233344445677899


Q ss_pred             EecCccccchhhHHHHHHHH
Q 023932          181 FSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+||++|.|++++.+.+.+.
T Consensus       146 e~SAk~g~~V~~~F~~l~~~  165 (189)
T cd04121         146 EVSPLCNFNITESFTELARI  165 (189)
T ss_pred             EecCCCCCCHHHHHHHHHHH
Confidence            99999999999988776643

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.53  E-value=6.3e-07  Score=86.12  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH------HHHHhcCCCeEEEEEcccCcC--HHHH----HHH
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMIS--MADR----NAW  168 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~------l~~~L~~kp~IlVlNK~Dl~~--~~~~----~~~  168 (275)
                      -+.||| ..+++.+...+..+|++++|+|++++.+....+      +...+...++++|+||+|+.+  ....    +++
T Consensus        90 iDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei  168 (426)
T TIGR00483        90 VDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEV  168 (426)
T ss_pred             EECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHH
Confidence            356897 567777777789999999999998873222211      122222357888999999974  2221    233


Q ss_pred             HHHHHHcC-----CeeEEecCccccchhh
Q 023932          169 ATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       169 ~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                      .+++++.+     ..++++||++|.|+.+
T Consensus       169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       169 SNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHcCCCcccceEEEeeccccccccc
Confidence            33444444     4689999999999975

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd00879 Sar1 Sar1 subfamily

Probab=98.53  E-value=4e-07  Score=77.04  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=61.9

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-  174 (275)
                      .||+. ........+++.+|.+++|+|+.+..+.  ....+...+.     +.|+++|+||+|+......++..+.+.. 
T Consensus        70 ~~G~~-~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~  148 (190)
T cd00879          70 LGGHE-QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLY  148 (190)
T ss_pred             CCCCH-HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcc
Confidence            46653 2334445677999999999999764221  1123333332     5899999999998643222233232211 


Q ss_pred             ---------------cCCeeEEecCccccchhhHHHHHHHH
Q 023932          175 ---------------QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       175 ---------------~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                                     ....++.+||++|.|++++.++|.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         149 GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                           11358899999999999999887653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.53  E-value=1.1e-06  Score=76.95  Aligned_cols=91  Identities=20%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcHHHHHHh---cCCCeEEEEEcccCcC----HHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL---GNRKRILVLNREDMIS----MADR  165 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~~l~~~L---~~kp~IlVlNK~Dl~~----~~~~  165 (275)
                      +-+.||| ..+...+...+..+|++|+|+|+..+.       .........++   ..+|+++++||+|+..    ....
T Consensus        81 liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          81 ILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             EEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence            4467998 456667777788999999999998742       11111212222   2367888999999973    2222


Q ss_pred             HHHHH----HHHHcC-----CeeEEecCccccchh
Q 023932          166 NAWAT----YFAKQG-----TKVIFSNGQLGMGTM  191 (275)
Q Consensus       166 ~~~~~----~~~~~g-----~~vi~iSak~g~Gi~  191 (275)
                      ++..+    .+...+     ..++++||++|.|++
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            22222    333333     458999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04213 GTP-binding protein; Provisional

Probab=98.52  E-value=1.6e-07  Score=80.32  Aligned_cols=53  Identities=32%  Similarity=0.419  Sum_probs=44.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--EEEeecccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS--QFFLLKYHQKC  270 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~--~~~~~~~~~~~  270 (275)
                      ..+|+++|.+|||||||+|+|.+.. ..++..||+|++...+.  .+.+.+++|+.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~   63 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWGDFILTDLPGFG   63 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeecceEEEeCCccc
Confidence            4689999999999999999999876 77889999999987665  35677777753

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.51  E-value=1e-06  Score=73.11  Aligned_cols=95  Identities=15%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~  172 (275)
                      .||+ ..........++++|++++|+|+.++.+..  .+..|+        .+.|+++|.||+|+....  ..+......
T Consensus        59 ~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  135 (167)
T cd01867          59 TAGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALA  135 (167)
T ss_pred             CCch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence            4554 334444556789999999999987654322  222222        157999999999997432  112233344


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ...+..++.+||++|.|++++.+.+.+.
T Consensus       136 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  163 (167)
T cd01867         136 DEYGIKFLETSAKANINVEEAFFTLAKD  163 (167)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            4456788999999999999988776543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>CHL00071 tufA elongation factor Tu

Probab=98.51  E-value=2.1e-06  Score=82.16  Aligned_cols=113  Identities=18%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             hhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-e
Q 023932           76 AYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-R  150 (275)
Q Consensus        76 ~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~  150 (275)
                      ...|++..-.++.....+.....  .+-+.||| .++.+.+...+..+|++++|+|++.+......++..++.  ++| +
T Consensus        53 ~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~i  131 (409)
T CHL00071         53 APEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNI  131 (409)
T ss_pred             ChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE
Confidence            34444444444444444432222  24467997 578888888899999999999999877666555555544  678 6


Q ss_pred             EEEEEcccCcCHHHHH-----HHHHHHHHcC-----CeeEEecCccccc
Q 023932          151 ILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMG  189 (275)
Q Consensus       151 IlVlNK~Dl~~~~~~~-----~~~~~~~~~g-----~~vi~iSak~g~G  189 (275)
                      |+++||+|+.+..+..     +...++...+     ..++++||.+|.+
T Consensus       132 IvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        132 VVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            6889999998654321     2333444333     4689999998863

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=98.51  E-value=1.1e-07  Score=88.70  Aligned_cols=51  Identities=27%  Similarity=0.320  Sum_probs=40.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      ..|+|||+||||||||||+|.+.+ ..+++.|+||++...-.       .+.+.++++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGl  216 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGL  216 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCc
Confidence            469999999999999999999865 78999999999986532       2455555554

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.51  E-value=1.1e-07  Score=92.69  Aligned_cols=52  Identities=31%  Similarity=0.367  Sum_probs=41.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ..+|+|||+||||||||||+|.+.+ ..+++.||||++...-.      .+.+.+++|+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGl  216 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGL  216 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCC
Confidence            3579999999999999999999864 77899999999864422      3456666664

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.50  E-value=7.8e-07  Score=85.45  Aligned_cols=118  Identities=14%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCcHHHHHHhc--C
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQWLG--N  147 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~--p~s~~d~~l~~~L~--~  147 (275)
                      +....|++..-.++..+..+.....  .+-+.||| .++++.+...+..+|++|+|+|+.+  +..........++.  +
T Consensus        60 D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~  138 (425)
T PRK12317         60 DRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG  138 (425)
T ss_pred             ccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC
Confidence            3334444444444443333322222  23356887 5566767777889999999999987  44444433333332  4


Q ss_pred             -CCeEEEEEcccCcCHH--HH----HHHHHHHHHcC-----CeeEEecCccccchhh
Q 023932          148 -RKRILVLNREDMISMA--DR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       148 -kp~IlVlNK~Dl~~~~--~~----~~~~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                       .++++++||+|+....  ..    ++..+.+...+     ..++++||++|.|+++
T Consensus       139 ~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        139 INQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             CCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence             4688999999997521  11    22233333334     3589999999999986

>PRK12736 elongation factor Tu; Reviewed

Probab=98.50  E-value=3e-06  Score=80.73  Aligned_cols=102  Identities=17%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH-----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATY  171 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~-----~~~~~  171 (275)
                      +-+.||| .++.+.+...+..+|++++|+|+..+......+...++.  ++| +|+++||+|+.+..+..     +..++
T Consensus        79 ~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~  157 (394)
T PRK12736         79 HVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL  157 (394)
T ss_pred             EEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence            3367998 466677777788999999999999876665555555543  677 56889999998543322     22233


Q ss_pred             HHHcC-----CeeEEecCcccc--------chhhHHHHHHHHhc
Q 023932          172 FAKQG-----TKVIFSNGQLGM--------GTMKLSRLAKALAS  202 (275)
Q Consensus       172 ~~~~g-----~~vi~iSak~g~--------Gi~~L~~~i~~l~~  202 (275)
                      +...+     ..++++||++|.        ++..|++.+.+..+
T Consensus       158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            33333     368999999983        45667776665543

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.49  E-value=7.9e-07  Score=75.03  Aligned_cols=104  Identities=14%  Similarity=0.062  Sum_probs=65.9

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh----cCCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L----~~kp~IlVlNK~Dl~~~  162 (275)
                      .+.+||+        ||+ .+........++.+|++|+|+|..+..+..+..  +...+    .+.|+++|.||+|+...
T Consensus        50 ~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  120 (187)
T cd04132          50 ELALWDT--------AGQ-EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             EEEEEEC--------CCc-hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence            4666763        443 233333334678999999999998754433221  11111    26799999999998653


Q ss_pred             H------HHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932          163 A------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       163 ~------~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .      ...+..++....+. .++.+||++|.|++++.+.+.+.+
T Consensus       121 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  166 (187)
T cd04132         121 KNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             ccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence            2      11222233334555 789999999999999887766544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.49  E-value=1.6e-06  Score=84.49  Aligned_cols=94  Identities=15%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHH--
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA--DRNAWATYF--  172 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~--  172 (275)
                      +=+.||| .++.+.+...+..+|++++|+|+..+.......   +...+..+++|+++||+|+.+..  ..++..+.+  
T Consensus       111 ~iDTPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~  189 (474)
T PRK05124        111 IADTPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLT  189 (474)
T ss_pred             EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHH
Confidence            3456997 466667777789999999999999876554333   33334345788999999997422  222232222  


Q ss_pred             --HHc----CCeeEEecCccccchhhHH
Q 023932          173 --AKQ----GTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       173 --~~~----g~~vi~iSak~g~Gi~~L~  194 (275)
                        .+.    ...++++||++|.|+.++.
T Consensus       190 ~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        190 FAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHhcCCCCCceEEEEEeecCCCccccc
Confidence              222    2578999999999987643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.49  E-value=3.5e-07  Score=91.21  Aligned_cols=97  Identities=18%  Similarity=0.071  Sum_probs=64.1

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHHH----
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYFA----  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~~----  173 (275)
                      +.|||. .+.......+..+|++|+|+|+.++......+....+.  +.|+++++||+|+...  ......+..+.    
T Consensus       141 DTPGhe-~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~  219 (587)
T TIGR00487       141 DTPGHE-AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPE  219 (587)
T ss_pred             ECCCCc-chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHH
Confidence            468884 33344445678899999999998765444433333332  7899999999999642  22222221110    


Q ss_pred             HcC--CeeEEecCccccchhhHHHHHHH
Q 023932          174 KQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..+  ..++++||++|.|+++|.+.+..
T Consensus       220 ~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       220 DWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             hcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            111  35899999999999999887754

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04113 Rab4 Rab4 subfamily

Probab=98.49  E-value=9.7e-07  Score=72.38  Aligned_cols=95  Identities=15%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHH--h--cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQW--L--GNRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l-~~~--L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........++++|.+++|+|+.++.+..+ ..+ ...  +  .+.|+++|+||+|+.....  .+........
T Consensus        56 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  134 (161)
T cd04113          56 TAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE  134 (161)
T ss_pred             Ccch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH
Confidence            5665 3444455567899999999999987543322 111 111  1  1679999999999975322  2233344445


Q ss_pred             cCCeeEEecCccccchhhHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .+..++.+||+++.|++++.+.+.
T Consensus       135 ~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         135 NGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHH
Confidence            667899999999999999887754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.49  E-value=9.8e-08  Score=79.67  Aligned_cols=77  Identities=22%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ++.|+|++|+|+++.  ..+..+...+.  ++|+++|+||+|++.+.....-.+.+ +..|.+++++||+++.|+++|++
T Consensus        77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~  154 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD  154 (156)
T ss_dssp             TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred             cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence            689999999999863  23333333332  89999999999987654211111122 23578999999999999999987


Q ss_pred             HH
Q 023932          196 LA  197 (275)
Q Consensus       196 ~i  197 (275)
                      .|
T Consensus       155 ~I  156 (156)
T PF02421_consen  155 AI  156 (156)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01866 Rab2 Rab2 subfamily

Probab=98.48  E-value=1.1e-06  Score=72.97  Aligned_cols=101  Identities=13%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI  160 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~  160 (275)
                      .+..||        .||+ .+........++.+|++++|+|+.++.+..  .+..|+        .+.|+++|.||+|+.
T Consensus        54 ~~~i~D--------t~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~  122 (168)
T cd01866          54 KLQIWD--------TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLE  122 (168)
T ss_pred             EEEEEE--------CCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            456666        4554 344444566789999999999998653322  233333        157899999999997


Q ss_pred             CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ...  ..+....+..+.+..++++||+++.|++++...+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~  164 (168)
T cd01866         123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE  164 (168)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            432  1223333444567789999999999999987766544

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04144 Ras2 Ras2 subfamily

Probab=98.48  E-value=1.3e-06  Score=74.39  Aligned_cols=103  Identities=10%  Similarity=0.013  Sum_probs=65.2

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccC
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDM  159 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl  159 (275)
                      .+.+||+        ||+ ..........++.+|++|+|+|..+..+... ..+...+        .+.|+++|+||+|+
T Consensus        48 ~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl  118 (190)
T cd04144          48 MLEVLDT--------AGQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK  118 (190)
T ss_pred             EEEEEEC--------CCc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence            3566763        454 3333334457899999999999876543221 1111111        14699999999999


Q ss_pred             cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .....  ...........+..++.+||++|.|++++.+.+.+.
T Consensus       119 ~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~  161 (190)
T cd04144         119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA  161 (190)
T ss_pred             cccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            64221  112222333446779999999999999998877653

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.48  E-value=1.1e-06  Score=71.55  Aligned_cols=88  Identities=10%  Similarity=-0.028  Sum_probs=58.4

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--cCCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEec
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L--~~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iS  183 (275)
                      .....+++.+|.+++|+|..+..+..+  .   .+.++.  .+.|+++|+||+|+..... ..+........+..++.+|
T Consensus        64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S  143 (162)
T cd04138          64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETS  143 (162)
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEec
Confidence            334457789999999999876432211  1   122221  2679999999999975321 2233333444567899999


Q ss_pred             CccccchhhHHHHHHH
Q 023932          184 GQLGMGTMKLSRLAKA  199 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~  199 (275)
                      |++|.|++++.+.+.+
T Consensus       144 a~~~~gi~~l~~~l~~  159 (162)
T cd04138         144 AKTRQGVEEAFYTLVR  159 (162)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999998877653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01868 Rab11_like Rab11-like

Probab=98.48  E-value=1.5e-06  Score=71.56  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=62.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD--RNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl~~~~~--~~~~~~~~  172 (275)
                      .||. .+........++.++.+|+|+|+.++.+..  .+..|+.        +.|+++|+||+|+.....  .++.....
T Consensus        59 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~  135 (165)
T cd01868          59 TAGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA  135 (165)
T ss_pred             CCCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence            4554 333444456778999999999998654322  2222221        478999999999864321  12233333


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHH
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ...+..++.+||++|.|++++.+.+..
T Consensus       136 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868         136 EKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999887653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.48  E-value=3.6e-07  Score=93.65  Aligned_cols=155  Identities=13%  Similarity=0.033  Sum_probs=87.3

Q ss_pred             cccCCCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcc--cccCccEEEEeCCCccccccchhHHHHHHHHHHHHhh
Q 023932           43 SSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDW--ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL  120 (275)
Q Consensus        43 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~  120 (275)
                      ..+-..||.|-++|...  -+|++|.++.....-...+.-.  .....-.+.|.+....+-+.|||. .+.......+..
T Consensus       284 ~~~~~R~pvV~ImGhvd--~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe-~F~~m~~rga~~  360 (787)
T PRK05306        284 EDLVPRPPVVTIMGHVD--HGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE-AFTAMRARGAQV  360 (787)
T ss_pred             cccccCCCEEEEECCCC--CCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCc-cchhHHHhhhhh
Confidence            34567889999999821  1265555332110000000000  011111222222222233568883 344444456788


Q ss_pred             cCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHH----HHcC--CeeEEecCccccch
Q 023932          121 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNGQLGMGT  190 (275)
Q Consensus       121 aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~----~~~g--~~vi~iSak~g~Gi  190 (275)
                      +|++|+|+|+.++..........++.  +.|+|+++||+|+...  ......+..+    ...+  ..++++||++|.|+
T Consensus       361 aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        361 TDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             CCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            99999999998875544434344433  7899999999999642  1111111111    1122  56899999999999


Q ss_pred             hhHHHHHHHH
Q 023932          191 MKLSRLAKAL  200 (275)
Q Consensus       191 ~~L~~~i~~l  200 (275)
                      ++|.+.|...
T Consensus       441 ~eLle~I~~~  450 (787)
T PRK05306        441 DELLEAILLQ  450 (787)
T ss_pred             hHHHHhhhhh
Confidence            9999887643

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.48  E-value=1.1e-06  Score=71.92  Aligned_cols=97  Identities=16%  Similarity=0.032  Sum_probs=63.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++|+|+|+.++.+... ..+...+     .+.|+++|.||+|+....  ..+........
T Consensus        57 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  135 (163)
T cd01860          57 TAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE  135 (163)
T ss_pred             CCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence            4565 2333334456789999999999986532211 1111111     146799999999987322  22333344455


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+..++++||++|.|+.++.+.+.+.
T Consensus       136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860         136 NGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999998876543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01893 Miro1 Miro1 subfamily

Probab=98.47  E-value=8.5e-07  Score=73.55  Aligned_cols=104  Identities=10%  Similarity=0.027  Sum_probs=65.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~  161 (275)
                      .++..||+        ||+ ......+...+..+|++++|+|+.++.+....  .+...+    .+.|+++|+||+|+.+
T Consensus        47 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~  117 (166)
T cd01893          47 VPTTIVDT--------SSR-PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD  117 (166)
T ss_pred             EEEEEEeC--------CCc-hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence            45667763        444 22333445567999999999999876543331  122222    2679999999999975


Q ss_pred             HHHH---HHHHHHH-HHc-C-CeeEEecCccccchhhHHHHHHHH
Q 023932          162 MADR---NAWATYF-AKQ-G-TKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       162 ~~~~---~~~~~~~-~~~-g-~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ....   ++....+ .+. . ..++.+||+++.|++++.+.+.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence            4321   1211111 111 1 368899999999999998876654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.47  E-value=3.9e-07  Score=85.72  Aligned_cols=55  Identities=24%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC  270 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~  270 (275)
                      .....|++|||+|+|||||+|+|.+.. ..+.+..++|.|....+       ..++.+|.||.
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI  251 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFI  251 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCc
Confidence            345689999999999999999999765 77788888888887776       26777888774

>PRK12735 elongation factor Tu; Reviewed

Probab=98.47  E-value=8.8e-07  Score=84.47  Aligned_cols=101  Identities=19%  Similarity=0.095  Sum_probs=69.2

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHHHHH-----HHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATY  171 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~~~~-----~~~~~  171 (275)
                      +=+.||| ..+.+.+...+..+|++++|+|+..+..........++.  ++|.+ +++||+|+.+..+..     +...+
T Consensus        79 ~iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~  157 (396)
T PRK12735         79 HVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL  157 (396)
T ss_pred             EEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence            3367999 577788888889999999999998866554444444443  67866 579999998543221     22233


Q ss_pred             HHHcC-----CeeEEecCcccc----------chhhHHHHHHHHh
Q 023932          172 FAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKALA  201 (275)
Q Consensus       172 ~~~~g-----~~vi~iSak~g~----------Gi~~L~~~i~~l~  201 (275)
                      +...+     ..++++||.+|.          ++..|++.|..+.
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            33332     568999999984          5667777776654

>cd04110 Rab35 Rab35 subfamily

Probab=98.46  E-value=1e-06  Score=75.71  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      +||+ ..........++.+|++++|+|+.++.+..  .+..|+       ...|+++|.||+|+.....  .+....+..
T Consensus        62 ~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~  138 (199)
T cd04110          62 TAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG  138 (199)
T ss_pred             CCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence            5665 333444456788999999999998754322  222222       1578999999999975322  123333344


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+..++.+||++|.|++++.+.|....
T Consensus       139 ~~~~~~~e~Sa~~~~gi~~lf~~l~~~~  166 (199)
T cd04110         139 QMGISLFETSAKENINVEEMFNCITELV  166 (199)
T ss_pred             HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence            4567899999999999999988776543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=98.46  E-value=1.2e-06  Score=76.21  Aligned_cols=98  Identities=17%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc----CCCeEEEEEcccCcCHHH--HHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD--RNAWATY  171 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~----~kp~IlVlNK~Dl~~~~~--~~~~~~~  171 (275)
                      .||+ ..........++++|++|+|+|..++.+..+.     .+.+...    +.|+++|.||+|+.....  .++...+
T Consensus        57 t~G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~  135 (215)
T cd04109          57 IGGQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF  135 (215)
T ss_pred             CCCc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH
Confidence            4554 33444455678999999999999876433221     1111111    236889999999964221  1222233


Q ss_pred             HHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       172 ~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ....+..++++||++|.|++++.+.+....
T Consensus       136 ~~~~~~~~~~iSAktg~gv~~lf~~l~~~l  165 (215)
T cd04109         136 AQANGMESCLVSAKTGDRVNLLFQQLAAEL  165 (215)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            334567789999999999999988776544

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.46  E-value=1e-06  Score=75.65  Aligned_cols=86  Identities=9%  Similarity=-0.051  Sum_probs=56.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--cCCCeEEEEEcccCcCH-HH--HHHHHHHHH-HcCCeeEEecC
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWATYFA-KQGTKVIFSNG  184 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L--~~kp~IlVlNK~Dl~~~-~~--~~~~~~~~~-~~g~~vi~iSa  184 (275)
                      ..+..+|++|+|+|+.++.+..+.     .+.++.  .++|+++|+||+|+... ..  .....+... ..+..++.+||
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  145 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA  145 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence            467899999999998765332211     112222  26899999999999653 11  111222222 22456889999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|++++.+.+.+..
T Consensus       146 ~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         146 KDNENVLEVFKELLRQA  162 (198)
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999998876543

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.46  E-value=1.2e-06  Score=71.91  Aligned_cols=88  Identities=9%  Similarity=-0.094  Sum_probs=58.0

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iS  183 (275)
                      .....++.+|.+++|+|+.++.+.... .    +.+...  +.|+++|.||+|+....  ..+.........+..++.+|
T Consensus        64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  143 (164)
T smart00173       64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETS  143 (164)
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEee
Confidence            334567899999999999875332111 1    111111  57999999999996532  11222233334457899999


Q ss_pred             CccccchhhHHHHHHHH
Q 023932          184 GQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l  200 (275)
                      |++|.|++++.+.+.+.
T Consensus       144 a~~~~~i~~l~~~l~~~  160 (164)
T smart00173      144 AKERVNVDEAFYDLVRE  160 (164)
T ss_pred             cCCCCCHHHHHHHHHHH
Confidence            99999999998876543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.45  E-value=1.1e-06  Score=87.76  Aligned_cols=103  Identities=18%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH---
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---  164 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~---  164 (275)
                      +..||        .||| ..+.......++.+|++++|+|++++......+...++.  +.|+++++||+|+.+...   
T Consensus        71 l~~iD--------TpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~  141 (590)
T TIGR00491        71 LLFID--------TPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHE  141 (590)
T ss_pred             EEEEE--------CCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhcc
Confidence            56666        5776 344444445678999999999999866555444444443  789999999999974210   


Q ss_pred             -----------H----HHH-------HHHHHHc---------------CCeeEEecCccccchhhHHHHHHHHh
Q 023932          165 -----------R----NAW-------ATYFAKQ---------------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       165 -----------~----~~~-------~~~~~~~---------------g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                                 .    ..+       ...+.++               ...++++||++|+|+++|.++|..+.
T Consensus       142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                       0    000       0111211               14689999999999999998876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.45  E-value=3.5e-06  Score=80.39  Aligned_cols=127  Identities=18%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK  149 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp  149 (275)
                      +....|++..-.++..+..|.....  .+-+.||| .++.+.+...+..+|++++|+|++.+.......+..++.  ++|
T Consensus        51 d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p  129 (396)
T PRK00049         51 DKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP  129 (396)
T ss_pred             cCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCC
Confidence            3344555555555555555533222  23467999 577788888889999999999999877666655555544  678


Q ss_pred             eE-EEEEcccCcCHHHHH-----HHHHHHHHcC-----CeeEEecCcccc----------chhhHHHHHHHHh
Q 023932          150 RI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKALA  201 (275)
Q Consensus       150 ~I-lVlNK~Dl~~~~~~~-----~~~~~~~~~g-----~~vi~iSak~g~----------Gi~~L~~~i~~l~  201 (275)
                      .+ +++||+|+.+..+..     +..+.+...+     ..++++||.++.          |+..|++.|.++.
T Consensus       130 ~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        130 YIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             EEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            76 589999998543321     2223333322     468899999875          4556777766543

>cd04136 Rap_like Rap-like subfamily

Probab=98.44  E-value=1.2e-06  Score=71.69  Aligned_cols=85  Identities=12%  Similarity=-0.043  Sum_probs=56.2

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ..+++.+|.+++|+|..++.+..+. .+...+      .+.|+++|+||+|+.....  .+......+..+..++.+||+
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  146 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAK  146 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCC
Confidence            4567899999999998765432211 111111      1579999999999865321  112222223345678999999


Q ss_pred             cccchhhHHHHHHH
Q 023932          186 LGMGTMKLSRLAKA  199 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~  199 (275)
                      +|.|++++.+.+.+
T Consensus       147 ~~~~v~~l~~~l~~  160 (163)
T cd04136         147 SKINVDEVFADLVR  160 (163)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999887654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=98.44  E-value=1.5e-06  Score=71.60  Aligned_cols=96  Identities=13%  Similarity=0.002  Sum_probs=60.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      .||+ ..........++.+|.+++|+|..+..+..+.  .+..++     .+.|+++|+||+|+.....  .+......+
T Consensus        56 t~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  134 (164)
T cd04175          56 TAGT-EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR  134 (164)
T ss_pred             CCCc-ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH
Confidence            3454 23333344577999999999998754332211  112221     2579999999999964321  111222233


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHH
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +.+..++++||++|.|++++.+++.+
T Consensus       135 ~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175         135 QWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             HhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            45678999999999999999887654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04140 ARHI_like ARHI subfamily

Probab=98.44  E-value=1.2e-06  Score=72.51  Aligned_cols=85  Identities=13%  Similarity=-0.003  Sum_probs=57.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecC
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSa  184 (275)
                      ..+..+|.+|+|+|..++.+... ..+..++        .+.|+++|.||+|+....+.  ++...+....+..++.+||
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  147 (165)
T cd04140          68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA  147 (165)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence            45688999999999987644322 1122221        25799999999999652211  1222223334567899999


Q ss_pred             ccccchhhHHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKAL  200 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l  200 (275)
                      ++|.|++++.+.|.++
T Consensus       148 ~~g~~v~~~f~~l~~~  163 (165)
T cd04140         148 KTNHNVQELFQELLNL  163 (165)
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999998887654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.43  E-value=2.7e-07  Score=88.55  Aligned_cols=51  Identities=27%  Similarity=0.343  Sum_probs=42.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      ..|+|||+||||||||||+|.+.+ .++++.|+||++...-.       .+.+.+.+|+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGl  216 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGL  216 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCC
Confidence            379999999999999999999865 77899999999986432       3566677765

>cd04123 Rab21 Rab21 subfamily

Probab=98.43  E-value=2e-06  Score=69.97  Aligned_cols=87  Identities=20%  Similarity=0.064  Sum_probs=58.6

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc-CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa  184 (275)
                      .....+.++|.+++|+|..++.+....     .+..... ++|+++|+||+|+.....  .++..+.....+..++++|+
T Consensus        65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  144 (162)
T cd04123          65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSA  144 (162)
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            334457899999999998765332111     1112222 579999999999874321  22333344445677899999


Q ss_pred             ccccchhhHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKA  199 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~  199 (275)
                      +++.|++++.+++..
T Consensus       145 ~~~~gi~~~~~~l~~  159 (162)
T cd04123         145 KTGKGIEELFLSLAK  159 (162)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999888754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=98.42  E-value=1.6e-06  Score=71.04  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=65.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      ..+..|+        .||. .+........++.+|++++|+|..++.+.... .    +..+..  +.|+++|+||+|+.
T Consensus        49 ~~~~l~D--------~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          49 VKLAIWD--------TAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEEEEEE--------CCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence            3456666        4453 33334445567899999999998765432211 1    111211  57899999999997


Q ss_pred             CHH-HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~-~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ... ..++...+....+..++++|+++|.|++++.+.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863         120 NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            332 223333344445678999999999999998876543

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PTZ00369 Ras-like protein; Provisional

Probab=98.42  E-value=1.2e-06  Score=74.53  Aligned_cols=97  Identities=10%  Similarity=-0.068  Sum_probs=61.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~  173 (275)
                      .||+ .........+++.+|++|+|+|+.++.+..+.     .+.++..  +.|+++|.||+|+....  ..........
T Consensus        60 t~G~-~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~  138 (189)
T PTZ00369         60 TAGQ-EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK  138 (189)
T ss_pred             CCCC-ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence            3454 22333334577899999999999776432111     1112112  56999999999985432  1122223333


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHH
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ..+..++.+||++|.|++++.+.+.+.
T Consensus       139 ~~~~~~~e~Sak~~~gi~~~~~~l~~~  165 (189)
T PTZ00369        139 SFGIPFLETSAKQRVNVDEAFYELVRE  165 (189)
T ss_pred             HhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            445678999999999999988776543

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.42  E-value=8.6e-07  Score=73.18  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh---cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMA--DRNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L---~~kp~IlVlNK~Dl~~~~--~~~~~~~~~  172 (275)
                      .||+...........++.+|++|+|+|+.++.+....     .+....   .+.|+++|.||+|+....  ..++.....
T Consensus        54 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  133 (165)
T cd04146          54 TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA  133 (165)
T ss_pred             CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence            4555322222345578899999999999876432211     112221   167999999999985432  112222333


Q ss_pred             HHcCCeeEEecCccc-cchhhHHHHHHH
Q 023932          173 AKQGTKVIFSNGQLG-MGTMKLSRLAKA  199 (275)
Q Consensus       173 ~~~g~~vi~iSak~g-~Gi~~L~~~i~~  199 (275)
                      ...+..++.+||++| .|++++.+.+..
T Consensus       134 ~~~~~~~~e~Sa~~~~~~v~~~f~~l~~  161 (165)
T cd04146         134 SELGCLFFEVSAAEDYDGVHSVFHELCR  161 (165)
T ss_pred             HHcCCEEEEeCCCCCchhHHHHHHHHHH
Confidence            345677899999999 489988776654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=4.5e-06  Score=79.25  Aligned_cols=128  Identities=20%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             chhhHHhhcccccCccEEEEeCCCccc--cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhcCC
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLRPV--QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNR  148 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~---l~~~L~~k  148 (275)
                      +.-.++.+.-...+-.|.+|+..-..+  -+-||| .++.+.+-..+.-+|..++|||+.+++.....+   +.+.+..+
T Consensus        26 d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~  104 (447)
T COG3276          26 DRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK  104 (447)
T ss_pred             ccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC
Confidence            444556666666777777775443333  355899 677777777788899999999998776655433   44444456


Q ss_pred             CeEEEEEcccCcCHHHHHHHHHHHHHc----CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          149 KRILVLNREDMISMADRNAWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       149 p~IlVlNK~Dl~~~~~~~~~~~~~~~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..++|+||+|..+...+++..+.+...    ..+++.+|+++|+|+++|++.|.++.+
T Consensus       105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            679999999999876554444433221    246789999999999999999998875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.41  E-value=2.8e-06  Score=85.70  Aligned_cols=118  Identities=20%  Similarity=0.185  Sum_probs=73.4

Q ss_pred             chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---cCC
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNR  148 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~~k  148 (275)
                      +....|++..-.++..+..+.....  .+-+.||| .++.+.+...+..+|++++|+|+..+..........++   ..+
T Consensus        80 d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~  158 (632)
T PRK05506         80 DGLAAEREQGITIDVAYRYFATPKRKFIVADTPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIR  158 (632)
T ss_pred             cCCHHHHhCCcCceeeeeEEccCCceEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCC
Confidence            3444444444444444333322222  24456998 45666677788999999999999887765544433333   345


Q ss_pred             CeEEEEEcccCcC--HHHHHHHHHH----HHHcC---CeeEEecCccccchhh
Q 023932          149 KRILVLNREDMIS--MADRNAWATY----FAKQG---TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       149 p~IlVlNK~Dl~~--~~~~~~~~~~----~~~~g---~~vi~iSak~g~Gi~~  192 (275)
                      ++++++||+|+.+  ....++....    +.+.+   ..++++||++|.|+.+
T Consensus       159 ~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        159 HVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             eEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            7888999999975  2222222222    23334   3589999999999874

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.41  E-value=3.2e-06  Score=68.62  Aligned_cols=82  Identities=17%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHH----HH--HcCCeeEEecCccccch
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FA--KQGTKVIFSNGQLGMGT  190 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~----~~--~~g~~vi~iSak~g~Gi  190 (275)
                      ++++++++|+|...+.......+..++.  +.|+++|+||+|+....+.......    +.  .....++++|++++.|+
T Consensus        80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~  159 (170)
T cd01876          80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI  159 (170)
T ss_pred             hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence            4678999999998776666556666665  6799999999999765443322222    21  11247889999999999


Q ss_pred             hhHHHHHHHH
Q 023932          191 MKLSRLAKAL  200 (275)
Q Consensus       191 ~~L~~~i~~l  200 (275)
                      +++.+.|.++
T Consensus       160 ~~l~~~l~~~  169 (170)
T cd01876         160 DELRALIEKW  169 (170)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.41  E-value=1.9e-06  Score=76.44  Aligned_cols=105  Identities=12%  Similarity=0.041  Sum_probs=67.6

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCc
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMI  160 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~  160 (275)
                      ..++.+||+..        . ..+......+++++|++|+|+|..++.+..+.  .+...    ..+.|++||.||+||.
T Consensus        60 ~v~l~iwDTaG--------~-e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~  130 (232)
T cd04174          60 RVELSLWDTSG--------S-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR  130 (232)
T ss_pred             EEEEEEEeCCC--------c-hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            35677888543        2 33333334578999999999999876544321  12222    2267899999999985


Q ss_pred             CH--------------HHHHHHHHHHHHcCC-eeEEecCcccc-chhhHHHHHHHH
Q 023932          161 SM--------------ADRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAKAL  200 (275)
Q Consensus       161 ~~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~-Gi~~L~~~i~~l  200 (275)
                      ..              -..++..++..+.+. .++.+||++|. |++++.+.+...
T Consensus       131 ~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~  186 (232)
T cd04174         131 TDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             cccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence            31              112233344455666 58899999997 799987765443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03118 Rab family protein; Provisional

Probab=98.41  E-value=1.7e-06  Score=74.99  Aligned_cols=99  Identities=13%  Similarity=0.014  Sum_probs=64.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMAD--RNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~  172 (275)
                      +||+ ..+.......++.+|++|+|+|+.++.+..+..  +...+      .+.|+++|.||+|+.....  .+......
T Consensus        69 t~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~  147 (211)
T PLN03118         69 TAGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA  147 (211)
T ss_pred             CCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH
Confidence            4664 334444456789999999999998754332211  11111      1468999999999964322  12233334


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ...+..++.+||+++.|++++.+.|.....
T Consensus       148 ~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        148 KEHGCLFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            445677899999999999999888775543

>cd04126 Rab20 Rab20 subfamily

Probab=98.41  E-value=1.4e-06  Score=76.65  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~  161 (275)
                      .++.+||+.        |+ .........+++.+|++|+|+|..+..+..+.  .+..+.    .+.|+|||.||+|+..
T Consensus        44 ~~l~iwDt~--------G~-e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~  114 (220)
T cd04126          44 YNISIWDTA--------GR-EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE  114 (220)
T ss_pred             EEEEEEeCC--------Cc-ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence            457788754        33 22222333467899999999999876433321  122222    1578999999999965


Q ss_pred             H-------------------H--HHHHHHHHHHHcC--------------CeeEEecCccccchhhHHHHHHHHh
Q 023932          162 M-------------------A--DRNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~-------------------~--~~~~~~~~~~~~g--------------~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .                   .  ..++...+..+.+              ..++++||++|.|++++...+.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~  189 (220)
T cd04126         115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV  189 (220)
T ss_pred             ccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            1                   0  1122323333322              4689999999999999877665443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.41  E-value=2.2e-06  Score=71.94  Aligned_cols=103  Identities=12%  Similarity=-0.056  Sum_probs=66.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L--~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||+        ||. ..........+..+|.+|+|+|..++.+.....     +.+..  .+.|+++|.||+|+.
T Consensus        50 ~~l~i~Dt--------~G~-~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~  120 (172)
T cd04141          50 ALLDILDT--------AGQ-AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE  120 (172)
T ss_pred             EEEEEEeC--------CCc-hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence            45666764        343 223333345678999999999998765543321     22211  157999999999985


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ....  .++.....++.+..++.+||++|.|++++.+.+..
T Consensus       121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141         121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            4321  11222333445678999999999999998877653

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.40  E-value=1.1e-06  Score=76.99  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=57.7

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-------L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..+++.+|++|+|+|..+..+..+  +..|       ..+.|+++|.||+|+.......+...+..+.+..++.+||++|
T Consensus        80 ~~~~~~~~~~ilvfD~~~~~s~~~--i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~  157 (219)
T PLN03071         80 DGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  157 (219)
T ss_pred             HHHcccccEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCC
Confidence            346789999999999987643322  2222       2368999999999986432111222333445678899999999


Q ss_pred             cchhhHHHHHHHH
Q 023932          188 MGTMKLSRLAKAL  200 (275)
Q Consensus       188 ~Gi~~L~~~i~~l  200 (275)
                      .|++++.++|.+.
T Consensus       158 ~~i~~~f~~l~~~  170 (219)
T PLN03071        158 YNFEKPFLYLARK  170 (219)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988776543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.40  E-value=8.6e-07  Score=81.74  Aligned_cols=166  Identities=16%  Similarity=0.141  Sum_probs=112.4

Q ss_pred             cccccccCCCCCe---------eeEecC-CCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEe---CCCccccccch
Q 023932           39 ASLSSSLSSSAPI---------IQTVGG-KQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWT---KSLRPVQWYPG  105 (275)
Q Consensus        39 ~~~~~~~~~~~~~---------~~~vg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~i~~~pG  105 (275)
                      |+..+..|++...         ++=||- .+|+-.|+|+.+.--++..+-..=.|-++...+=.-+   ..-..+.+.||
T Consensus       137 AP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPG  216 (369)
T COG0536         137 APRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPG  216 (369)
T ss_pred             CcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcc
Confidence            3455555665543         344677 7888899999999988888888878887777543322   12233677888


Q ss_pred             hHHHH------HHHHHHHHhhcCeEEEEEeCCCCCC-----CCc---HHHHHH---hcCCCeEEEEEcccC-cCHHHHHH
Q 023932          106 HIAKT------EKELKDQLKLMDVVIEVRDARIPLS-----TTH---PLMDQW---LGNRKRILVLNREDM-ISMADRNA  167 (275)
Q Consensus       106 ~~~~~------~k~l~~~l~~aDlVI~VvDar~p~s-----~~d---~~l~~~---L~~kp~IlVlNK~Dl-~~~~~~~~  167 (275)
                      .++-+      --++.+.+++|.++++|+|......     ...   .++..|   |.++|.+||+||+|+ .+.++.++
T Consensus       217 LIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~  296 (369)
T COG0536         217 LIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE  296 (369)
T ss_pred             cccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH
Confidence            76432      2477889999999999999863221     111   122222   348999999999995 45566666


Q ss_pred             HHHHHHHc-CCeeE-EecCccccchhhHHHHHHHHhchh
Q 023932          168 WATYFAKQ-GTKVI-FSNGQLGMGTMKLSRLAKALASDV  204 (275)
Q Consensus       168 ~~~~~~~~-g~~vi-~iSak~g~Gi~~L~~~i~~l~~~~  204 (275)
                      ..+++.+. +..++ ++|+.+++|+++|...+.++..+.
T Consensus       297 ~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         297 LKKALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             HHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            66666653 33222 399999999999988877776554

>PLN03127 Elongation factor Tu; Provisional

Probab=98.39  E-value=3.4e-06  Score=81.69  Aligned_cols=127  Identities=17%  Similarity=0.071  Sum_probs=80.0

Q ss_pred             chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK  149 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp  149 (275)
                      |....|++..-.++..+..+.+...  .+-+.||| .++.+.+...+..+|++++|+|++.+....+.++..++.  +.|
T Consensus       100 D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip  178 (447)
T PLN03127        100 DKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP  178 (447)
T ss_pred             cCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence            3444555555566665555544322  24477999 467777777778899999999999887666666666554  678


Q ss_pred             e-EEEEEcccCcCHHHHHHH-----HHHHHHcC-----CeeEEecCc---cccc-------hhhHHHHHHHHh
Q 023932          150 R-ILVLNREDMISMADRNAW-----ATYFAKQG-----TKVIFSNGQ---LGMG-------TMKLSRLAKALA  201 (275)
Q Consensus       150 ~-IlVlNK~Dl~~~~~~~~~-----~~~~~~~g-----~~vi~iSak---~g~G-------i~~L~~~i~~l~  201 (275)
                      . |+++||+|+.+..+..+.     .+.+...+     ..++++|+.   +|.|       +..|.+.+.++.
T Consensus       179 ~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        179 SLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             eEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            4 678999999864432221     12222212     457777775   4444       456666666554

>cd04118 Rab24 Rab24 subfamily

Probab=98.38  E-value=2.2e-06  Score=72.79  Aligned_cols=86  Identities=12%  Similarity=-0.016  Sum_probs=57.7

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHhc----CCCeEEEEEcccCcCHHH------HHHHHHHHHHcCCeeEEecC
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWLG----NRKRILVLNREDMISMAD------RNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L~----~kp~IlVlNK~Dl~~~~~------~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ..++++|++++|+|..++.+..+ ..+...+.    +.|+++|+||+|+.....      ..+...+....+..++.+||
T Consensus        69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa  148 (193)
T cd04118          69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSS  148 (193)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeC
Confidence            45679999999999977533221 11222221    579999999999864321      12222333344567899999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|+++|.+.+.+..
T Consensus       149 ~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         149 KTGQNVDELFQKVAEDF  165 (193)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999988877554

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.38  E-value=9e-07  Score=81.42  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=44.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ...+|+++|.+||||||++|+|++++.+.+++.+++|.....+.      .+.+.+++|+.+
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d   98 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE   98 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence            35799999999999999999999998888888887766554333      356777777653

>cd04114 Rab30 Rab30 subfamily

Probab=98.37  E-value=2.8e-06  Score=70.10  Aligned_cols=96  Identities=16%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHHH-HHHHHHHHH-
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMADR-NAWATYFAK-  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~~-~~~~~~~~~-  174 (275)
                      +||+ ..........+..+|++++|+|.+++.+... ..+...+    . +.|+++|+||+|+....+. ......+.+ 
T Consensus        63 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~  141 (169)
T cd04114          63 TAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDA  141 (169)
T ss_pred             CCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            5665 3444555678899999999999876533211 1121111    2 5788999999998643321 222233333 


Q ss_pred             cCCeeEEecCccccchhhHHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ....++.+||++|.|++++.+.|..
T Consensus       142 ~~~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         142 QDMYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             cCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            2356889999999999999887664

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.37  E-value=1.4e-06  Score=73.40  Aligned_cols=103  Identities=12%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~  161 (275)
                      ..+..||+.        |+ .+........++++|++|+|+|..++.+..+.  .+...+    .+.|+++|.||+|+..
T Consensus        49 ~~l~i~Dt~--------G~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~  119 (175)
T cd01874          49 YTLGLFDTA--------GQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD  119 (175)
T ss_pred             EEEEEEECC--------Cc-cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence            456788754        32 12222223467899999999999876443322  122222    2679999999999864


Q ss_pred             HHHH--------------HHHHHHHHHcC-CeeEEecCccccchhhHHHHHHH
Q 023932          162 MADR--------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       162 ~~~~--------------~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..+.              ++..+..++.+ ..++.+||++|.|++++.+.+..
T Consensus       120 ~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             ChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence            3221              11111222334 57899999999999998876654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04176 Rap2 Rap2 subgroup

Probab=98.37  E-value=1.9e-06  Score=70.73  Aligned_cols=87  Identities=14%  Similarity=-0.057  Sum_probs=56.7

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iS  183 (275)
                      ....+++++|.+++|+|..++.+..+. .+...+      .++|+++|+||+|+.....  ...........+..++++|
T Consensus        65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (163)
T cd04176          65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETS  144 (163)
T ss_pred             hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEec
Confidence            344567899999999999775432211 111111      2689999999999864321  1122222223456789999


Q ss_pred             CccccchhhHHHHHHH
Q 023932          184 GQLGMGTMKLSRLAKA  199 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~  199 (275)
                      |++|.|++++.+.+.+
T Consensus       145 a~~~~~v~~l~~~l~~  160 (163)
T cd04176         145 AKSKTMVNELFAEIVR  160 (163)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999998877653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.36  E-value=5.1e-07  Score=72.97  Aligned_cols=41  Identities=41%  Similarity=0.490  Sum_probs=36.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      ++++++|.+|+|||||+|+|.+.....+++.||+|++....
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~   42 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEE   42 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEE
Confidence            57999999999999999999998877889999999987643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01895 EngA2 EngA2 subfamily

Probab=98.36  E-value=5.4e-07  Score=73.81  Aligned_cols=53  Identities=36%  Similarity=0.469  Sum_probs=42.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +++|+++|.+|+|||||+|+|++.....+++.|++|++.....      .+.+.+++|.
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~   60 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGI   60 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCC
Confidence            5689999999999999999999987778889999998885322      2345556554

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.36  E-value=1.7e-06  Score=72.82  Aligned_cols=84  Identities=17%  Similarity=-0.008  Sum_probs=55.5

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc----CCCeEEEEEcccCcCHHH--------------HHHHHHHHHH
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMAD--------------RNAWATYFAK  174 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~----~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~  174 (275)
                      ...++.+|++|+|+|..++.+..+.  .+...+.    +.|+++|.||+|+.....              .++..+..++
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  146 (174)
T cd01871          67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  146 (174)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence            3467899999999999876443322  1222222    579999999999954211              1111222333


Q ss_pred             cC-CeeEEecCccccchhhHHHHHH
Q 023932          175 QG-TKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       175 ~g-~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .+ ..++.+||++|.|++++.+.+.
T Consensus       147 ~~~~~~~e~Sa~~~~~i~~~f~~l~  171 (174)
T cd01871         147 IGAVKYLECSALTQKGLKTVFDEAI  171 (174)
T ss_pred             cCCcEEEEecccccCCHHHHHHHHH
Confidence            44 4789999999999999887654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01892 Miro2 Miro2 subfamily

Probab=98.36  E-value=7.6e-07  Score=74.46  Aligned_cols=86  Identities=20%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCC-eeEEecCcccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM  188 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L---~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~-~vi~iSak~g~  188 (275)
                      .+++++|++|+|+|+.++.+... ..+...+   .+.|+++|+||+|+.+....  ....++.+..+. .++.+||++|.
T Consensus        73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (169)
T cd01892          73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD  152 (169)
T ss_pred             hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence            35689999999999977532211 1222223   26799999999999643211  111122233444 46899999999


Q ss_pred             chhhHHHHHHHHh
Q 023932          189 GTMKLSRLAKALA  201 (275)
Q Consensus       189 Gi~~L~~~i~~l~  201 (275)
                      |++++.+.+.+.+
T Consensus       153 ~v~~lf~~l~~~~  165 (169)
T cd01892         153 SSNELFTKLATAA  165 (169)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999988776543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01875 RhoG RhoG subfamily

Probab=98.36  E-value=2.1e-06  Score=73.30  Aligned_cols=105  Identities=15%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH----hcCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~----L~~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+.        |+ .+.......+++++|++|+|+|..++.+..+..  +...    ..+.|++||.||.||..
T Consensus        51 ~~l~i~Dt~--------G~-e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~  121 (191)
T cd01875          51 VSLNLWDTA--------GQ-EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN  121 (191)
T ss_pred             EEEEEEECC--------Cc-hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence            457778743        33 233333334678999999999998765433221  2221    13679999999999954


Q ss_pred             HHH-H-------------HHHHHHHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932          162 MAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~~~-~-------------~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ... .             ++..++.++.+ ..++.+||++|.|++++.+.+.+..
T Consensus       122 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             ChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            311 0             11122223345 4789999999999999988766543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.35  E-value=8.1e-07  Score=81.42  Aligned_cols=44  Identities=32%  Similarity=0.489  Sum_probs=37.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEe
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFL  263 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~  263 (275)
                      ..++++||.||||||||+|+|++.+ ..+++.|+||...  +..++.
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~--VPG~l~  106 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEP--VPGMLE  106 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceeccc--ccceEe
Confidence            4689999999999999999999877 8999999999876  444333

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.35  E-value=3.2e-06  Score=67.58  Aligned_cols=91  Identities=22%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcccc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM  188 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~g~  188 (275)
                      ....+.-...++|++++|..+.++.+...+.+.... .+|+|-|++|+||....+++....++.+.| .++|.+|+.+..
T Consensus        54 ~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~  132 (148)
T COG4917          54 WYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQ  132 (148)
T ss_pred             HHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcc
Confidence            445566667999999999999988777766655433 566999999999997777777777777777 468899999999


Q ss_pred             chhhHHHHHHHHh
Q 023932          189 GTMKLSRLAKALA  201 (275)
Q Consensus       189 Gi~~L~~~i~~l~  201 (275)
                      |+++|.+++..+.
T Consensus       133 gv~~l~~~L~~~e  145 (148)
T COG4917         133 GVEELVDYLASLE  145 (148)
T ss_pred             cHHHHHHHHHhhc
Confidence            9999999877553

>cd04133 Rop_like Rop subfamily

Probab=98.35  E-value=1.2e-06  Score=74.31  Aligned_cols=104  Identities=13%  Similarity=-0.008  Sum_probs=66.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+..        + .+.......+++.+|.+|+|+|..+..+..+.  .+...+    .+.|++||.||+||.+
T Consensus        49 v~l~i~Dt~G--------~-~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~  119 (176)
T cd04133          49 VNLGLWDTAG--------Q-EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD  119 (176)
T ss_pred             EEEEEEECCC--------C-ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence            5677887543        1 22222233467999999999999876554332  122222    2679999999999954


Q ss_pred             HH------------HHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHH
Q 023932          162 MA------------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       162 ~~------------~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ..            ..++...+.++.+. .++.+||++|.|++++.+.+.+.
T Consensus       120 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~  171 (176)
T cd04133         120 DKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKV  171 (176)
T ss_pred             ChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence            21            11222333334455 58999999999999988776654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04125 RabA_like RabA-like subfamily

Probab=98.35  E-value=3.4e-06  Score=71.46  Aligned_cols=103  Identities=14%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl  159 (275)
                      ..+..|+.        ||. ..........++++|++|+|+|..++.+..  .+..|+       . +.|+++|.||+|+
T Consensus        49 ~~~~i~Dt--------~g~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~--~i~~~~~~i~~~~~~~~~~ivv~nK~Dl  117 (188)
T cd04125          49 IKLQIWDT--------NGQ-ERFRSLNNSYYRGAHGYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDL  117 (188)
T ss_pred             EEEEEEEC--------CCc-HHHHhhHHHHccCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence            34556663        443 333334456789999999999997653322  222222       1 4689999999998


Q ss_pred             cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .....  ......+....+..++.+||++|.|++++.+.+.+..
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~  161 (188)
T cd04125         118 VNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI  161 (188)
T ss_pred             cccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            74321  1122223334467899999999999999887765543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.35  E-value=1.8e-06  Score=71.95  Aligned_cols=102  Identities=10%  Similarity=0.058  Sum_probs=63.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ .+.......+++++|++|+|+|+.+..+..+  ..+..++     .++|+++|+||+|+.
T Consensus        43 ~~~~i~D--------~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  113 (167)
T cd04161          43 YEVCIFD--------LGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK  113 (167)
T ss_pred             EEEEEEE--------CCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence            4456666        5665 3344445578899999999999987532211  1222222     267999999999986


Q ss_pred             CHHHHHHHHHH-----HH-HcC--CeeEEecCccc------cchhhHHHHHH
Q 023932          161 SMADRNAWATY-----FA-KQG--TKVIFSNGQLG------MGTMKLSRLAK  198 (275)
Q Consensus       161 ~~~~~~~~~~~-----~~-~~g--~~vi~iSak~g------~Gi~~L~~~i~  198 (275)
                      ......+..+.     +. +.+  ..++.+||++|      .|+.+-.++|.
T Consensus       114 ~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         114 NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            54322222222     11 112  35677999998      78888877764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04155 Arl3 Arl3 subfamily

Probab=98.34  E-value=1.9e-06  Score=71.45  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=59.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQ  175 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~  175 (275)
                      .||+ ..........++.+|.+++|+|+.+.....  ...+...+     .++|+++++||+|+......++..+.+.-.
T Consensus        65 ~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~  143 (173)
T cd04155          65 IGGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH  143 (173)
T ss_pred             CCCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc
Confidence            4554 233334445678999999999997642211  11222222     258999999999997643333333332111


Q ss_pred             C-----CeeEEecCccccchhhHHHHHH
Q 023932          176 G-----TKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       176 g-----~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .     ..++.+||++|.|++++.++|.
T Consensus       144 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         144 DLRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             ccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence            1     2477899999999999988764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.34  E-value=1.2e-06  Score=72.79  Aligned_cols=101  Identities=13%  Similarity=-0.033  Sum_probs=62.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---cCCCeEEEEEcccCcCH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMISM  162 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L---~~kp~IlVlNK~Dl~~~  162 (275)
                      ..+..||.        ||+ .........+++.+|++|+|+|+.++.+..  ...+.+++   .++|+++|.||+|+...
T Consensus        44 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~  114 (164)
T cd04162          44 AIMELLEI--------GGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA  114 (164)
T ss_pred             eEEEEEEC--------CCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence            45677773        444 223333445789999999999987754211  12233333   36899999999998653


Q ss_pred             HHHHHHH-----HHH-HHcCCeeEEecCcc------ccchhhHHHHH
Q 023932          163 ADRNAWA-----TYF-AKQGTKVIFSNGQL------GMGTMKLSRLA  197 (275)
Q Consensus       163 ~~~~~~~-----~~~-~~~g~~vi~iSak~------g~Gi~~L~~~i  197 (275)
                      .......     ..+ .+.+..++.+||++      ++|++++.+.+
T Consensus       115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~  161 (164)
T cd04162         115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL  161 (164)
T ss_pred             CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence            3222211     112 23356678888887      88887776554

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.34  E-value=3.1e-06  Score=82.04  Aligned_cols=119  Identities=17%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             CcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHh
Q 023932           72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWL  145 (275)
Q Consensus        72 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~----~d~~l~~~L  145 (275)
                      +.|....|++..-.++..+..+......  +=+.||| .++.+.+...+..+|.+|+|+|+..+...    ...+..+.+
T Consensus        59 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~  137 (447)
T PLN00043         59 VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHA  137 (447)
T ss_pred             hhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHH
Confidence            4566677777776666666555444333  4477999 77888888889999999999999875211    112222221


Q ss_pred             -----cCCC-eEEEEEcccCcCH----HH----HHHHHHHHHHcC-----CeeEEecCccccchh
Q 023932          146 -----GNRK-RILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTM  191 (275)
Q Consensus       146 -----~~kp-~IlVlNK~Dl~~~----~~----~~~~~~~~~~~g-----~~vi~iSak~g~Gi~  191 (275)
                           .+.| +|+++||+|+...    ..    .++...++.+.|     ..++++||.+|.|+.
T Consensus       138 ~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             HHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence                 2564 6778999998631    11    233444455555     458999999999985

>cd00157 Rho Rho (Ras homology) family

Probab=98.34  E-value=9.7e-07  Score=72.80  Aligned_cols=83  Identities=14%  Similarity=0.005  Sum_probs=55.8

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH-------------HHHHHHHHHcCC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR-------------NAWATYFAKQGT  177 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~-------------~~~~~~~~~~g~  177 (275)
                      .++.+|++++|+|+.++.+....  .+...+    .++|+++|+||+|+......             +.........+.
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  147 (171)
T cd00157          68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA  147 (171)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence            45889999999999865332221  112221    26899999999998755422             122233334444


Q ss_pred             -eeEEecCccccchhhHHHHHHH
Q 023932          178 -KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       178 -~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                       .++.+||++|.|++++.+.|.+
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         148 IGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             eEEEEeecCCCCCHHHHHHHHhh
Confidence             7999999999999999887653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.33  E-value=2.1e-06  Score=78.17  Aligned_cols=105  Identities=20%  Similarity=0.170  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---CCCeEEEEEcccCcCHHHH-----------------HHHH
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMADR-----------------NAWA  169 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---~kp~IlVlNK~Dl~~~~~~-----------------~~~~  169 (275)
                      ..+..+..+.+||+|+.|+|+.++-...++.+...+.   +.|-|+|+||+|+......                 .+|.
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            3456677899999999999998755555665554443   7899999999998754211                 1222


Q ss_pred             HHHHHc--------------CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCC
Q 023932          170 TYFAKQ--------------GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL  214 (275)
Q Consensus       170 ~~~~~~--------------g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~  214 (275)
                      +.|...              ...+|++||++|.|+++|+++|...++..+.+++..-.+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T  283 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT  283 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence            222111              025899999999999999999988887776666554433

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.33  E-value=3.1e-06  Score=84.70  Aligned_cols=111  Identities=19%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--H-HH
Q 023932           91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--A-DR  165 (275)
Q Consensus        91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~-~~  165 (275)
                      +.|.+....+-+.||| ..+...+...++.+|.+++|+|+..+.......+...+.  +.|+|+|+||+|+...  . ..
T Consensus        59 v~~~~~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~  137 (594)
T TIGR01394        59 IRYNGTKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVV  137 (594)
T ss_pred             EEECCEEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHH
Confidence            4444333334467999 567778888999999999999998765444444444332  7899999999998642  1 23


Q ss_pred             HHHHHHHHHc-------CCeeEEecCcccc----------chhhHHHHHHHHhc
Q 023932          166 NAWATYFAKQ-------GTKVIFSNGQLGM----------GTMKLSRLAKALAS  202 (275)
Q Consensus       166 ~~~~~~~~~~-------g~~vi~iSak~g~----------Gi~~L~~~i~~l~~  202 (275)
                      ++..+.+.+.       .+.++++||++|.          |+..|++.|.+..+
T Consensus       138 ~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       138 DEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            3444444322       3468999999996          67777777666554

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.33  E-value=6.2e-06  Score=73.76  Aligned_cols=111  Identities=15%  Similarity=-0.004  Sum_probs=67.4

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-HH-HHHh-------------cCCCeEEEEEcccCcCHH--HHHHHHHHHHH-cCCe
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-------------GNRKRILVLNREDMISMA--DRNAWATYFAK-QGTK  178 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~-~l-~~~L-------------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~-~g~~  178 (275)
                      .+..+|++|+|+|..+..+..+. .+ ..++             .+.|+|+|+||+|+....  ..++..+.+.. .+..
T Consensus        68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~  147 (247)
T cd04143          68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA  147 (247)
T ss_pred             HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence            56889999999998865332211 11 1111             257999999999996421  22233333332 2457


Q ss_pred             eEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE-EeeCCCChhH
Q 023932          179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI-VGYPNVGKSS  232 (275)
Q Consensus       179 vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I-vG~pNvGKST  232 (275)
                      ++.+||++|.|++++.+.|..+...-.     ....+...++.+ .|.+.-+||-
T Consensus       148 ~~evSAktg~gI~elf~~L~~~~~~p~-----e~~~~~~~~~~~~~~~~~~~~~~  197 (247)
T cd04143         148 YFEVSAKKNSNLDEMFRALFSLAKLPN-----EMSPSLHRKISVQYGDALHKKSR  197 (247)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcccc-----ccCccccceeeeeeccccccccc
Confidence            899999999999999988877653211     111122233443 3667666664

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd00876 Ras Ras family

Probab=98.32  E-value=3.4e-06  Score=68.38  Aligned_cols=96  Identities=13%  Similarity=-0.026  Sum_probs=63.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~  173 (275)
                      +||+.. ........++.+|++++|+|..++.+..+. .    +.....  +.|+++|+||+|+....  ..+.......
T Consensus        54 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  132 (160)
T cd00876          54 TAGQEE-FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK  132 (160)
T ss_pred             CCChHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence            677643 444455678999999999998765322111 1    111122  68999999999997522  1223333444


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHH
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +.+..++.+|++++.|++++.+.|..
T Consensus       133 ~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         133 EWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             HcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            45568999999999999999887654

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=5.4e-06  Score=71.01  Aligned_cols=114  Identities=14%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             cccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEE
Q 023932           82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVL  154 (275)
Q Consensus        82 ~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVl  154 (275)
                      ...+.-..+..||+..         ++++...+..++++++++|.|.|..+..+..+  ..+.....     +.-++||.
T Consensus        65 ~l~d~~vrLQlWDTAG---------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVG  135 (221)
T KOG0094|consen   65 YLEDRTVRLQLWDTAG---------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVG  135 (221)
T ss_pred             EEcCcEEEEEEEeccc---------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEc
Confidence            3344456788898776         67888888899999999999999987654433  22333332     23467899


Q ss_pred             EcccCcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchh
Q 023932          155 NREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDV  204 (275)
Q Consensus       155 NK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~  204 (275)
                      ||.||.++.+.  ++-...-++.+..++.+||+.|.|++.|.+.|...++..
T Consensus       136 nKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  136 NKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             ccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence            99999987543  222233445567889999999999999988887766543

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=2.5e-06  Score=82.65  Aligned_cols=99  Identities=18%  Similarity=0.110  Sum_probs=68.9

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC---
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---  176 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g---  176 (275)
                      +.|||.+-..-+.+ =.+-+|++++|||+.++....-.+-...++  +.|+++++||+|+.+.+- ......+.++|   
T Consensus        61 DTPGHeAFt~mRaR-Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~  138 (509)
T COG0532          61 DTPGHEAFTAMRAR-GASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVP  138 (509)
T ss_pred             cCCcHHHHHHHHhc-CCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCH
Confidence            46999543222211 236699999999999988777666556665  789999999999985421 22222233333   


Q ss_pred             ------CeeEEecCccccchhhHHHHHHHHhc
Q 023932          177 ------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       177 ------~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                            ..++++||++|+|+.+|++.+.-+++
T Consensus       139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         139 EEWGGDVIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             hhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence                  36889999999999999988765543

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.32  E-value=2.1e-06  Score=71.32  Aligned_cols=84  Identities=15%  Similarity=0.004  Sum_probs=55.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------------RNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~  175 (275)
                      ..++.+|++|+|+|..++.+..+.  .+...+    .+.|+++|.||+|+.....              .++.....++.
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  144 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI  144 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence            356899999999999875333221  112222    2689999999999865221              01112233344


Q ss_pred             CC-eeEEecCccccchhhHHHHHHH
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +. .++.+||++|.|++++.+.+..
T Consensus       145 ~~~~~~e~Sa~~~~~v~~lf~~l~~  169 (174)
T smart00174      145 GAVKYLECSALTQEGVREVFEEAIR  169 (174)
T ss_pred             CCcEEEEecCCCCCCHHHHHHHHHH
Confidence            53 7899999999999999877654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.31  E-value=3.2e-06  Score=72.02  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=65.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+..        . ..........++.+|++|+|+|..++.+..+.  .+...+    .+.|++||.||+||..
T Consensus        53 ~~l~iwDtaG--------~-e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~  123 (182)
T cd04172          53 IELSLWDTSG--------S-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  123 (182)
T ss_pred             EEEEEEECCC--------c-hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence            4678888553        1 22222233467899999999999876443321  122222    2679999999999853


Q ss_pred             H--------------HHHHHHHHHHHHcCC-eeEEecCccccc-hhhHHHHHHH
Q 023932          162 M--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA  199 (275)
Q Consensus       162 ~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~G-i~~L~~~i~~  199 (275)
                      .              -..++..++.++.+. .++.+||++|.| ++++.+.+..
T Consensus       124 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         124 DLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             ChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence            1              011233334445564 799999999998 9988766543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04142 RRP22 RRP22 subfamily

Probab=98.31  E-value=4.6e-06  Score=71.97  Aligned_cols=111  Identities=17%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             CccEEEEeCCCccccccchhH-HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHH----Hh----cCCCeEEEEEc
Q 023932           87 DADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQ----WL----GNRKRILVLNR  156 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~-~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~----~L----~~kp~IlVlNK  156 (275)
                      ...+..||+...  ..|++.. ..........++.+|++|+|+|+.++.+.... .+.+    ..    .+.|+++|.||
T Consensus        48 ~~~l~i~Dt~G~--~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK  125 (198)
T cd04142          48 VYDLHILDVPNM--QRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNK  125 (198)
T ss_pred             EEEEEEEeCCCc--ccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEEC
Confidence            345667875431  2222111 11222234457899999999999876433221 1111    11    25799999999


Q ss_pred             ccCcCHH--HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHH
Q 023932          157 EDMISMA--DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       157 ~Dl~~~~--~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +|+....  ..+....... ..+..++++||++|.|+++|.+.+..
T Consensus       126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~  171 (198)
T cd04142         126 RDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI  171 (198)
T ss_pred             ccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            9995432  1111212222 23567899999999999998766543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=3.5e-06  Score=72.09  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      ..+.+||+..         ++++...+..+++.++.||+|.|...-.+..+  +..|+.        +.|.++|.||+|+
T Consensus        58 iKlQIWDTAG---------QERFrtit~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl  126 (205)
T KOG0084|consen   58 IKLQIWDTAG---------QERFRTITSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASENVPKLLVGNKCDL  126 (205)
T ss_pred             EEEEeeeccc---------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccCCCCeEEEeecccc
Confidence            4688999776         47788888899999999999999976544332  233332        5699999999999


Q ss_pred             cCHHHH--HHHHHHHHHcCCe-eEEecCccccchhhHHHHHHH
Q 023932          160 ISMADR--NAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       160 ~~~~~~--~~~~~~~~~~g~~-vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+....  ++...+..+.++. ++.+||+++.++++....+..
T Consensus       127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~  169 (205)
T KOG0084|consen  127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAK  169 (205)
T ss_pred             HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHH
Confidence            765322  2223344455666 899999999998876555443

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=7.4e-07  Score=75.93  Aligned_cols=105  Identities=14%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      ..+.+||+..         +++...-...++++++++|+|.|..+..+..  .+..|+.        +.-+.||.||+||
T Consensus        54 ikfeIWDTAG---------QERy~slapMYyRgA~AAivvYDit~~~SF~--~aK~WvkeL~~~~~~~~vialvGNK~DL  122 (200)
T KOG0092|consen   54 IKFEIWDTAG---------QERYHSLAPMYYRGANAAIVVYDITDEESFE--KAKNWVKELQRQASPNIVIALVGNKADL  122 (200)
T ss_pred             EEEEEEEcCC---------cccccccccceecCCcEEEEEEecccHHHHH--HHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence            5688999765         3444444556789999999999998653332  2333432        2335569999999


Q ss_pred             cCH--HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          160 ISM--ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       160 ~~~--~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ...  -+.++...+..++|.-++.+|||+|.|+++|...|.+..+.
T Consensus       123 ~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~  168 (200)
T KOG0092|consen  123 LERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPC  168 (200)
T ss_pred             hhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence            873  23455566677788899999999999999998877765543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.30  E-value=5.6e-06  Score=67.93  Aligned_cols=86  Identities=9%  Similarity=0.007  Sum_probs=60.8

Q ss_pred             HHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEec
Q 023932          116 DQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN  183 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~--s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iS  183 (275)
                      .+.+.+++|+|+||+.++.  +....++..+|.     ++|.+++.||+|+...-...+..+.+.     ...+.++.+|
T Consensus        84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siS  163 (186)
T KOG0075|consen   84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSIS  163 (186)
T ss_pred             HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEE
Confidence            4679999999999998852  333445655553     689999999999875533233333221     1113578999


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      ++...+++.+.++|.+..
T Consensus       164 cke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  164 CKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EcCCccHHHHHHHHHHHh
Confidence            999999999999987654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.30  E-value=6.2e-06  Score=79.90  Aligned_cols=119  Identities=18%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             cchhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHH
Q 023932           73 SIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQ  143 (275)
Q Consensus        73 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~  143 (275)
                      .+....|++..-.++..+..+.....  .+-+.||| .++.+.+...+..+|.+++|+|+..+..       ....+...
T Consensus        60 ~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~  138 (446)
T PTZ00141         60 LDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL  138 (446)
T ss_pred             hcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH
Confidence            45556666666655555554433332  34567998 5778888888999999999999987642       12222222


Q ss_pred             Hhc--CCC-eEEEEEcccCc--C--HHHH----HHHHHHHHHcC-----CeeEEecCccccchhh
Q 023932          144 WLG--NRK-RILVLNREDMI--S--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       144 ~L~--~kp-~IlVlNK~Dl~--~--~~~~----~~~~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                      ++.  +.| +|+++||+|..  .  +...    ++..+.+.+.+     ..++++|+.+|.|+.+
T Consensus       139 ~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        139 LAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             HHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            322  655 56899999943  2  2222    23333343333     4689999999999864

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.30  E-value=2.5e-06  Score=73.51  Aligned_cols=102  Identities=15%  Similarity=0.006  Sum_probs=65.8

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~  160 (275)
                      ...+..||+..        .....   ...+++++|++|+|+|..++.+..+.  .+...+    .+.|+++|.||+||.
T Consensus        65 ~v~l~iwDTaG--------~~~~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~  133 (195)
T cd01873          65 SVSLRLWDTFG--------DHDKD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR  133 (195)
T ss_pred             EEEEEEEeCCC--------Chhhh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence            45678888643        21111   12357899999999999876544322  122222    257999999999985


Q ss_pred             CH-------------------H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SM-------------------A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~-------------------~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..                   .  ..++..+..++.+..++.+||++|.|++++.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         134 YADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            31                   0  112333344456778999999999999988776543

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=5.1e-06  Score=71.75  Aligned_cols=101  Identities=13%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcc
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNRE  157 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~  157 (275)
                      ....+..|++..         ++++...+..+++.|+.|++|+|..+.-+..+  +..|+.        +.+.+||.||+
T Consensus        59 ~~i~lQiWDtaG---------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~  127 (207)
T KOG0078|consen   59 KKIKLQIWDTAG---------QERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKC  127 (207)
T ss_pred             eEEEEEEEEccc---------chhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccc
Confidence            456788999776         68888899999999999999999987655443  233443        57899999999


Q ss_pred             cCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHH
Q 023932          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       158 Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i  197 (275)
                      |+..+..  .+.-.++..++|..++.+||++|.++++....+
T Consensus       128 D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L  169 (207)
T KOG0078|consen  128 DLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL  169 (207)
T ss_pred             cccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence            9976322  122333445668999999999999998764443

>cd04111 Rab39 Rab39 subfamily

Probab=98.29  E-value=4.7e-06  Score=72.51  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---hc--CCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LG--NRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      .||+ ..........++++|++|+|+|..++.+..+.  .+..+   +.  ..++++|.||+|+.....  .++...+.+
T Consensus        59 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~  137 (211)
T cd04111          59 TAGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK  137 (211)
T ss_pred             CCcc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH
Confidence            4554 33334445678999999999999876332221  11111   11  346789999999965321  122222333


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+..++.+||++|.|++++.+.|.+..
T Consensus       138 ~~~~~~~e~Sak~g~~v~e~f~~l~~~~  165 (211)
T cd04111         138 DLGMKYIETSARTGDNVEEAFELLTQEI  165 (211)
T ss_pred             HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999988877544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=98.29  E-value=6.1e-06  Score=68.19  Aligned_cols=101  Identities=13%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl  159 (275)
                      ..+..||.        +|. ..........+..+|++++|+|..++.+..+  +..|+       . +.|+++|.||+|+
T Consensus        49 ~~l~i~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl  117 (161)
T cd04117          49 VRIQIWDT--------AGQ-ERYQTITKQYYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADE  117 (161)
T ss_pred             EEEEEEeC--------CCc-HhHHhhHHHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence            34667774        333 2333444567789999999999876533221  22221       1 4689999999998


Q ss_pred             cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .....  .++.....+..+..++.+||++|.|++++.+.|.+
T Consensus       118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117         118 EQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            64321  12222223334567899999999999999887654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.29  E-value=5.6e-06  Score=68.88  Aligned_cols=88  Identities=15%  Similarity=0.059  Sum_probs=53.1

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~-~l~----~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ....++++|++++|+|+.++.+..+. .+.    ...  .+.|+++|.||+|+.....  .+....+.......++.+||
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (170)
T cd04115          69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA  148 (170)
T ss_pred             HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence            34567899999999999876433221 111    111  1579999999999864322  11222222334467899999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      +++.+...+.+.+..++
T Consensus       149 ~~~~~~~~i~~~f~~l~  165 (170)
T cd04115         149 KDPSENDHVEAIFMTLA  165 (170)
T ss_pred             cCCcCCCCHHHHHHHHH
Confidence            99544444444444443

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.29  E-value=1.4e-06  Score=71.86  Aligned_cols=50  Identities=36%  Similarity=0.486  Sum_probs=40.1

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +++++|.+|||||||+|+|.+.. ..+++.|++|++...-.      .+.+.+++|.
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~   57 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGL   57 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCc
Confidence            68999999999999999999875 56778899998876322      4567777775

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=98.28  E-value=7.5e-07  Score=73.49  Aligned_cols=37  Identities=35%  Similarity=0.495  Sum_probs=32.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +|+++|.+|||||||+|+|.+.. ..++..||+|++..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~   38 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPN   38 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCc
Confidence            48999999999999999999765 57888999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04163 Era Era subfamily

Probab=98.28  E-value=1.6e-06  Score=70.19  Aligned_cols=55  Identities=33%  Similarity=0.433  Sum_probs=44.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ..+++++|.+|+|||||+|+|++...+.+++.+++|++.....      .+.+.+++|.+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~   63 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK   63 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence            3579999999999999999999988777888888888765433      355778888654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01878 HflX HflX subfamily

Probab=98.27  E-value=1.8e-06  Score=74.06  Aligned_cols=40  Identities=30%  Similarity=0.258  Sum_probs=33.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ..+++|+|.+|||||||+|+|++.. +.+.+.+++|.+...
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~   80 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTT   80 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceecccee
Confidence            4699999999999999999999865 556667778876653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PLN03110 Rab GTPase; Provisional

Probab=98.27  E-value=5.5e-06  Score=72.30  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=63.5

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHHHH--HHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~  172 (275)
                      .||. .........+++.+|.+|+|+|.+++.+..  .+..|+        .+.|+++|+||+|+......  +......
T Consensus        68 t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~  144 (216)
T PLN03110         68 TAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA  144 (216)
T ss_pred             CCCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence            3554 334445556789999999999998754332  222332        15789999999998543211  1111222


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ...+..++.+||++|.|++++.+.+....
T Consensus       145 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        145 EKEGLSFLETSALEATNVEKAFQTILLEI  173 (216)
T ss_pred             HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            33567899999999999999988775544

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.27  E-value=2e-06  Score=71.82  Aligned_cols=82  Identities=15%  Similarity=-0.025  Sum_probs=54.9

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA--------------DRNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|..++.+..+.  .+...+    .+.|+++|.||+|+....              ..++...+.++.
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~  146 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI  146 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence            356899999999999876443221  122222    268999999999986432              111222333344


Q ss_pred             CC-eeEEecCccccchhhHHHHH
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i  197 (275)
                      +. .++.+||++|.|++++.+.+
T Consensus       147 ~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         147 GACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHH
Confidence            55 79999999999999987654

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04134 Rho3 Rho3 subfamily

Probab=98.27  E-value=2.6e-06  Score=72.49  Aligned_cols=85  Identities=14%  Similarity=0.035  Sum_probs=56.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHHH--------------HHHHHHHHcC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------------AWATYFAKQG  176 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~~--------------~~~~~~~~~g  176 (275)
                      .+..+|++|+|+|..++.+....  .+...+    .+.|+++|.||+|+.......              +......+.+
T Consensus        68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (189)
T cd04134          68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN  147 (189)
T ss_pred             cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            56889999999998776443221  111222    267999999999996532211              1122222334


Q ss_pred             -CeeEEecCccccchhhHHHHHHHHh
Q 023932          177 -TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       177 -~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                       ..++.+||++|.|++++.+.+.+..
T Consensus       148 ~~~~~e~SAk~~~~v~e~f~~l~~~~  173 (189)
T cd04134         148 ALRYLECSAKLNRGVNEAFTEAARVA  173 (189)
T ss_pred             CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence             5689999999999999988776544

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.25  E-value=8.4e-07  Score=81.70  Aligned_cols=41  Identities=41%  Similarity=0.505  Sum_probs=36.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      ..+++|||.|||||||++|+|++.. +.++..|.+|-|...-
T Consensus        20 ~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a   60 (391)
T KOG1491|consen   20 NLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEA   60 (391)
T ss_pred             cceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccc
Confidence            4689999999999999999999887 5599999999998654

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.2e-06  Score=84.89  Aligned_cols=101  Identities=21%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh-cCCCeEEEEEcccCcCHH--HH-HHHHHHHHHc
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA--DR-NAWATYFAKQ  175 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L-~~kp~IlVlNK~Dl~~~~--~~-~~~~~~~~~~  175 (275)
                      =+.||| ..+.-+....+.-||-+|+||||..+....-.. +..-+ .+..+|.|+||+|+....  .. ....+.|...
T Consensus       130 IDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~  208 (650)
T KOG0462|consen  130 IDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP  208 (650)
T ss_pred             ecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence            367999 667777788899999999999999887654322 11112 278899999999996532  22 2233333333


Q ss_pred             CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          176 GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       176 g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+++.+|||+|.|+++|++.|-+..+
T Consensus       209 ~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  209 PAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             ccceEEEEeccCccHHHHHHHHHhhCC
Confidence            458999999999999999887765543

>cd04131 Rnd Rnd subfamily

Probab=98.24  E-value=5e-06  Score=70.43  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=64.9

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~  160 (275)
                      ...+..||+..        . ..........++.+|++|+|+|..++.+..+.  .+...+    .+.|++||.||+||.
T Consensus        48 ~~~l~iwDt~G--------~-~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~  118 (178)
T cd04131          48 RIELSLWDTSG--------S-PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR  118 (178)
T ss_pred             EEEEEEEECCC--------c-hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence            35677888543        2 22222223457899999999999876544321  122212    267999999999985


Q ss_pred             CH--------------HHHHHHHHHHHHcCC-eeEEecCccccc-hhhHHHHHHH
Q 023932          161 SM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA  199 (275)
Q Consensus       161 ~~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~G-i~~L~~~i~~  199 (275)
                      ..              -..++..++.++.+. .++.+||++|.+ ++++...+..
T Consensus       119 ~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         119 TDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             cChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence            31              011223333444564 689999999995 9888766554

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=98.24  E-value=8.5e-06  Score=70.72  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=60.9

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .+|+ ..........+..+|.+|+|+|..++.+....  .+....    .+.|+++|.||+|+....  ..++..++.++
T Consensus        62 t~G~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  140 (210)
T PLN03108         62 TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE  140 (210)
T ss_pred             CCCc-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH
Confidence            3444 23334445677899999999999765433221  111111    157899999999996532  12223334445


Q ss_pred             cCCeeEEecCccccchhhHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      .+..++.+||+++.|++++.+.+.
T Consensus       141 ~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108        141 HGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            567899999999999999765543

>cd04116 Rab9 Rab9 subfamily

Probab=98.24  E-value=8.8e-06  Score=67.34  Aligned_cols=95  Identities=7%  Similarity=-0.008  Sum_probs=60.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-----cCCCeEEEEEcccCcCHH-HHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-----GNRKRILVLNREDMISMA-DRNAWATY  171 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~  171 (275)
                      .||+ .+........++.+|++++|+|..++.+...  ..+..+   .     .+.|+++|+||+|+.... ..++..++
T Consensus        61 ~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  139 (170)
T cd04116          61 TAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW  139 (170)
T ss_pred             CCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence            4665 3344444567899999999999876533221  111111   1     146899999999986422 12233333


Q ss_pred             HHHcC-CeeEEecCccccchhhHHHHHH
Q 023932          172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       172 ~~~~g-~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ..+.+ ..++.+||++|.|+.++.+.+.
T Consensus       140 ~~~~~~~~~~e~Sa~~~~~v~~~~~~~~  167 (170)
T cd04116         140 CRENGDYPYFETSAKDATNVAAAFEEAV  167 (170)
T ss_pred             HHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            44445 4689999999999998877654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03126 Elongation factor Tu; Provisional

Probab=98.23  E-value=1.5e-05  Score=77.90  Aligned_cols=114  Identities=15%  Similarity=0.068  Sum_probs=72.9

Q ss_pred             chhhHHhhcccccCccEEEEeCCC--ccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932           74 IEAYEEECDWADLDADLYYWTKSL--RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK  149 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp  149 (275)
                      |....|++....++..+..+....  ..+=+.||| .++.+.+...+..+|++++|+|+..+......+....+.  ++|
T Consensus       120 D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~  198 (478)
T PLN03126        120 DAAPEERARGITINTATVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP  198 (478)
T ss_pred             cCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence            334556665555554444443222  234467998 567778888889999999999999876555444444433  677


Q ss_pred             -eEEEEEcccCcCHHHH-H----HHHHHHHHcC-----CeeEEecCcccc
Q 023932          150 -RILVLNREDMISMADR-N----AWATYFAKQG-----TKVIFSNGQLGM  188 (275)
Q Consensus       150 -~IlVlNK~Dl~~~~~~-~----~~~~~~~~~g-----~~vi~iSak~g~  188 (275)
                       +++++||+|+.+.++. +    +...++.+.+     ..++++|+.+|.
T Consensus       199 ~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        199 NMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence             6778999999874332 1    2333344432     468899998774

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.23  E-value=1.1e-05  Score=84.95  Aligned_cols=107  Identities=18%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD  164 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~  164 (275)
                      +..+..||        .||| ..+.......+..+|++++|+|+.+++..........+.  ++|+++|+||+|+.+...
T Consensus       525 ~p~i~fiD--------TPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~  595 (1049)
T PRK14845        525 IPGLLFID--------TPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWN  595 (1049)
T ss_pred             cCcEEEEE--------CCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccc
Confidence            35577787        5777 334333344567799999999998876555544444443  789999999999964210


Q ss_pred             ------------------HHHH-------HHHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhc
Q 023932          165 ------------------RNAW-------ATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       165 ------------------~~~~-------~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                                        ..+.       ...+.+.|               ..++++||++|.|+++|+..|..+.+
T Consensus       596 ~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        596 ISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             cccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                              1111       01112221               46899999999999999988765543

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=9.8e-06  Score=78.77  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             cccccCCCCCeeeEecC-CCCCCCCCCCCC----CCCcchhhHHhhcccccCccEEEEeCCCccc--cccchhHHHHHHH
Q 023932           41 LSSSLSSSAPIIQTVGG-KQSSWHGGNSNN----SNGSIEAYEEECDWADLDADLYYWTKSLRPV--QWYPGHIAKTEKE  113 (275)
Q Consensus        41 ~~~~~~~~~~~~~~vg~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~~pG~~~~~~k~  113 (275)
                      -+..+-..||.+-|.|- +.   +|.|++-    +--|....+..   -.-+--|...-....+|  -+.|||++  +..
T Consensus       145 ~p~~l~~RpPVVTiMGHVDH---GKTTLLD~lRks~VAA~E~GGI---TQhIGAF~V~~p~G~~iTFLDTPGHaA--F~a  216 (683)
T KOG1145|consen  145 DPKLLEPRPPVVTIMGHVDH---GKTTLLDALRKSSVAAGEAGGI---TQHIGAFTVTLPSGKSITFLDTPGHAA--FSA  216 (683)
T ss_pred             CHhhcCCCCCeEEEeecccC---ChhhHHHHHhhCceehhhcCCc---cceeceEEEecCCCCEEEEecCCcHHH--HHH
Confidence            44577778999999998 54   2555542    22222221111   11111233222233333  35699965  333


Q ss_pred             HHHH-HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC---------CeeEE
Q 023932          114 LKDQ-LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIF  181 (275)
Q Consensus       114 l~~~-l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g---------~~vi~  181 (275)
                      ++.. ..-+|+|++||.+.++....-.+-+...+  +.|+++.+||||..... .++....+..+|         ..+++
T Consensus       217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvip  295 (683)
T KOG1145|consen  217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIP  295 (683)
T ss_pred             HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEE
Confidence            3322 45589999999999887766555555554  78999999999986432 234444444443         46899


Q ss_pred             ecCccccchhhHHHHHHHHh
Q 023932          182 SNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +||++|+|++.|.+.+.-++
T Consensus       296 iSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  296 ISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             eecccCCChHHHHHHHHHHH
Confidence            99999999999988766544

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.22  E-value=1e-06  Score=82.08  Aligned_cols=51  Identities=29%  Similarity=0.355  Sum_probs=40.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      ..|+|||+||||||||||+|.+.+ ..+++.|+||++...-.       .+.+.++++.
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGl  215 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGL  215 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCc
Confidence            469999999999999999999765 67999999999866422       3455666655

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.22  E-value=5.7e-06  Score=64.89  Aligned_cols=95  Identities=17%  Similarity=-0.054  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-----HH--hcCCCeEEEEEcccCcCHHHHHHH--H-HHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-----QW--LGNRKRILVLNREDMISMADRNAW--A-TYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~-----~~--L~~kp~IlVlNK~Dl~~~~~~~~~--~-~~~  172 (275)
                      +||+.. ........+..+|.+++|+|+..+....+....     ..  ..++|+++|+||+|+.........  . ...
T Consensus        52 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~  130 (157)
T cd00882          52 TAGQER-FRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA  130 (157)
T ss_pred             cCChHH-HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH
Confidence            566533 233335677899999999999876443332211     11  127899999999999765443322  1 122


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHH
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ......++.+|+.++.|++++.++|.
T Consensus       131 ~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         131 KELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             hhcCCcEEEEecCCCCChHHHHHHHh
Confidence            22346899999999999998887753

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01894 EngA1 EngA1 subfamily

Probab=98.22  E-value=1.2e-06  Score=70.84  Aligned_cols=49  Identities=47%  Similarity=0.630  Sum_probs=39.6

Q ss_pred             EEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       221 ~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +++|.+|||||||+|+|.+.....+++.|++|++.....      .+.+.+++|.
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~   55 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGI   55 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCC
Confidence            478999999999999999887777889999998876544      2456677664

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.3e-06  Score=86.86  Aligned_cols=38  Identities=39%  Similarity=0.554  Sum_probs=34.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .+++++|.||||||||+|+|++.+ ..|++.||+|-+-.
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkk   41 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKK   41 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEE
Confidence            469999999999999999999876 99999999997653

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.20  E-value=2.2e-06  Score=85.44  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCC-CcccccceEEE-----EEEeecccccccc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKYVS-----QFFLLKYHQKCKV  272 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~-pGtTr~~~~v~-----~~~~~~~~~~~~~  272 (275)
                      .+...+|+++|.|||||||++|+|++++.+.++.. |+||+-.....     .+.+.+++|+.+-
T Consensus       115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt  179 (763)
T TIGR00993       115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSS  179 (763)
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcc
Confidence            34567999999999999999999999988888876 67777433221     3688899998763

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.19  E-value=1.8e-05  Score=79.11  Aligned_cols=96  Identities=18%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH----------------
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----------------  164 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~----------------  164 (275)
                      .||| ..+.......+..+|++++|+|++++..........++.  +.|+++++||+|+.....                
T Consensus        78 TPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         78 TPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             CCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            5777 344444445678899999999998865444434344433  789999999999863110                


Q ss_pred             --HH-------HHHHHHHHcC---------------CeeEEecCccccchhhHHHHHHH
Q 023932          165 --RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       165 --~~-------~~~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                        ..       +...++.+.|               ..++++||++|.|+++|.+.+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence              00       1112222222               35899999999999998877654

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.17  E-value=1.3e-05  Score=68.04  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C-CCeEEEEEcccCcCHHHHHHHHHHHHHc--CC
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT  177 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~~~~~~~~~~~~~--g~  177 (275)
                      +||| .+++-...-..+.++.+|+++|.+.+.......+.+++.  + .|++|..||.||.+..-.++..+++...  ..
T Consensus        75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~  153 (187)
T COG2229          75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV  153 (187)
T ss_pred             CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence            6898 566666666778899999999999888776667777765  4 7999999999997654444455555443  57


Q ss_pred             eeEEecCccccchhhHHHHHH
Q 023932          178 KVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      +++.+++..++|..+.+..+.
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll  174 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLL  174 (187)
T ss_pred             ceeeeecccchhHHHHHHHHH
Confidence            899999999998876655544

>cd04148 RGK RGK subfamily

Probab=98.17  E-value=8.9e-06  Score=71.31  Aligned_cols=84  Identities=17%  Similarity=0.041  Sum_probs=56.1

Q ss_pred             Hh-hcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCccc
Q 023932          118 LK-LMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       118 l~-~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      +. .+|++++|+|+.++.+... ..+...+      .+.|+|+|.||+|+....+.  ++........+..++++||+++
T Consensus        69 ~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~  148 (221)
T cd04148          69 MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQ  148 (221)
T ss_pred             hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence            35 8999999999987643221 1122211      25799999999998653221  1122222334567899999999


Q ss_pred             cchhhHHHHHHHHh
Q 023932          188 MGTMKLSRLAKALA  201 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~  201 (275)
                      .|++++.+.+....
T Consensus       149 ~gv~~l~~~l~~~~  162 (221)
T cd04148         149 HNVDELLEGIVRQI  162 (221)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999988876554

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.17  E-value=2.6e-06  Score=87.49  Aligned_cols=55  Identities=29%  Similarity=0.380  Sum_probs=43.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      ..+++++|.||||||||+|+|++.+ ..+++.||+|.+.....      .+.+.+++|.-.+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl   63 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence            3579999999999999999999875 68999999999765432      3456777776543

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.16  E-value=4.3e-06  Score=66.61  Aligned_cols=39  Identities=46%  Similarity=0.674  Sum_probs=35.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      .|++++|.+|+|||||+|+|.... ...+..+++|++...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~   40 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVT   40 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeE
Confidence            589999999999999999999887 888888999988765

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=7.8e-06  Score=68.78  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCC--CcHHHH-----HHhcCCCeEEEEEccc
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLST--THPLMD-----QWLGNRKRILVLNRED  158 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~-~~l~~aDlVI~VvDar~p~s~--~d~~l~-----~~L~~kp~IlVlNK~D  158 (275)
                      ++.+..||-..          .+..+.++ +++..|+.||+|||+.++.-.  .-..+.     +.+.+.|+++.+||-|
T Consensus        68 ~~~l~fwdlgG----------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd  137 (197)
T KOG0076|consen   68 NAPLSFWDLGG----------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD  137 (197)
T ss_pred             cceeEEEEcCC----------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence            46688888332          23344444 578999999999999774211  111222     2244889999999999


Q ss_pred             CcCHHHHHHHHHHHHH--c----CCeeEEecCccccchhhHHHHHHHHhch
Q 023932          159 MISMADRNAWATYFAK--Q----GTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       159 l~~~~~~~~~~~~~~~--~----g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      +.+..+.++....+..  .    ...+.++||.+|+|+++=.+++....+.
T Consensus       138 ~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  138 LQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             hhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence            9887666665555541  1    2468899999999998877776655443

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=4.3e-06  Score=70.81  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             ccCCCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCe
Q 023932           44 SLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDV  123 (275)
Q Consensus        44 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDl  123 (275)
                      -++|.-.|+||+|-+.                   |..++.  ...+..||-.        | +.+...--+-+..+.+.
T Consensus        38 k~~E~vttvPTiGfnV-------------------E~v~yk--n~~f~vWDvG--------G-q~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   38 KLGEIVTTVPTIGFNV-------------------ETVEYK--NISFTVWDVG--------G-QEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             ccCCcccCCCccccce-------------------eEEEEc--ceEEEEEecC--------C-CcccccchhhhccCCcE
Confidence            4788888899999987                   222222  5567788722        2 23333333347899999


Q ss_pred             EEEEEeCCCCC--CCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEecCccccchh
Q 023932          124 VIEVRDARIPL--STTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       124 VI~VvDar~p~--s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~  191 (275)
                      +|||||+.+..  .....++.+.+.     +.|+++..||.|+.......+..+.+.     ...-.+-.++|.+|.|+.
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999987642  222234444443     679999999999875433333322222     222357788999999999


Q ss_pred             hHHHHHHHHh
Q 023932          192 KLSRLAKALA  201 (275)
Q Consensus       192 ~L~~~i~~l~  201 (275)
                      +-.+++.+..
T Consensus       168 egl~wl~~~~  177 (181)
T KOG0070|consen  168 EGLDWLSNNL  177 (181)
T ss_pred             HHHHHHHHHH
Confidence            9888877654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.12  E-value=2.5e-06  Score=69.28  Aligned_cols=47  Identities=34%  Similarity=0.434  Sum_probs=37.6

Q ss_pred             EEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       222 IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ++|.+|||||||+|+|.+.. ..+++.||+|++.....      .+.+.+++|.
T Consensus         1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~   53 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGT   53 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCc
Confidence            58999999999999999875 78899999999986432      2456666664

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.12  E-value=9.1e-06  Score=67.47  Aligned_cols=85  Identities=16%  Similarity=0.069  Sum_probs=54.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhcCCCeEEEEEcccCcCHHHHH--------------HHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADRN--------------AWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~----~L~~kp~IlVlNK~Dl~~~~~~~--------------~~~~~~~~~  175 (275)
                      ..+.++|++++|+|..+..+..+.  .+..    ...+.|+++|.||+|+.......              .......+.
T Consensus        68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~  147 (175)
T cd01870          68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI  147 (175)
T ss_pred             cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence            356889999999998765322211  1111    12378999999999986532211              111111222


Q ss_pred             C-CeeEEecCccccchhhHHHHHHHH
Q 023932          176 G-TKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 g-~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      + ..++.+||++|.|++++.+.+...
T Consensus       148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         148 GAFGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             CCcEEEEeccccCcCHHHHHHHHHHH
Confidence            3 378999999999999998877643

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=9.6e-06  Score=66.60  Aligned_cols=101  Identities=15%  Similarity=0.072  Sum_probs=73.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---c-----CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---G-----NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~-----~kp~IlVlNK~Dl  159 (275)
                      .++.+|++..         |+.....+-.+++.++.+|++.|..+..+..  .+..|.   .     +.++|+|.||||+
T Consensus        70 iklQiwDTag---------qEryrtiTTayyRgamgfiLmyDitNeeSf~--svqdw~tqIktysw~naqvilvgnKCDm  138 (193)
T KOG0093|consen   70 IKLQIWDTAG---------QERYRTITTAYYRGAMGFILMYDITNEESFN--SVQDWITQIKTYSWDNAQVILVGNKCDM  138 (193)
T ss_pred             EEEEEEeccc---------chhhhHHHHHHhhccceEEEEEecCCHHHHH--HHHHHHHHheeeeccCceEEEEecccCC
Confidence            6788998765         5666666778899999999999987653322  233343   2     7899999999999


Q ss_pred             cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .++..+  +.-.....++|.+++..|||.+.+++++.+.+..
T Consensus       139 d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  139 DSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            765321  3334455567899999999999999888765544

>PRK10218 GTP-binding protein; Provisional

Probab=98.11  E-value=1.5e-05  Score=80.00  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH---HHHHHHHHHHHH--
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM---ADRNAWATYFAK--  174 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~---~~~~~~~~~~~~--  174 (275)
                      +.||| ..+.......++.+|.+|+|+|+..+...........+.  ++|.++++||+|+...   ..+++..+.+..  
T Consensus        74 DTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~  152 (607)
T PRK10218         74 DTPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD  152 (607)
T ss_pred             ECCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence            46888 456667778899999999999998875554444444432  7899999999998632   233444444432  


Q ss_pred             -----cCCeeEEecCcccc----------chhhHHHHHHHHhc
Q 023932          175 -----QGTKVIFSNGQLGM----------GTMKLSRLAKALAS  202 (275)
Q Consensus       175 -----~g~~vi~iSak~g~----------Gi~~L~~~i~~l~~  202 (275)
                           ..+.++++||++|.          |+..|.+.|.+..+
T Consensus       153 ~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        153 ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence                 12468999999998          46666666555443

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.10  E-value=1.5e-06  Score=79.42  Aligned_cols=38  Identities=34%  Similarity=0.472  Sum_probs=34.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..+++||+||+|||||+|+|...+ .+|+++++||....
T Consensus       197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~  234 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPH  234 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccC-Ccccccceeeeccc
Confidence            358999999999999999999876 69999999998765

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.10  E-value=1.4e-05  Score=82.31  Aligned_cols=81  Identities=21%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      +.+|++++|+|+.+..  .+..+...+.  ++|+++|+||+|+..+.......+.+ ++.|.+++++|+++|+|+++|++
T Consensus        84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~  161 (772)
T PRK09554         84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL  161 (772)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence            5799999999997642  2222322232  78999999999987543322222333 34578899999999999999999


Q ss_pred             HHHHHh
Q 023932          196 LAKALA  201 (275)
Q Consensus       196 ~i~~l~  201 (275)
                      .+.+..
T Consensus       162 ~I~~~~  167 (772)
T PRK09554        162 AIDRHQ  167 (772)
T ss_pred             HHHHhh
Confidence            887654

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.10  E-value=1.8e-05  Score=76.65  Aligned_cols=83  Identities=22%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      ++....++++|++|+|+|+..+.+..+. +...+  .++|+++|+||+|+... +...   +....+..++.+||++ .|
T Consensus       274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEF---FVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhh---hhhhcCCceEEEEEec-CC
Confidence            4556788999999999999887655443 33333  27899999999999654 2111   2223455678999997 57


Q ss_pred             hhhHHHHHHHH
Q 023932          190 TMKLSRLAKAL  200 (275)
Q Consensus       190 i~~L~~~i~~l  200 (275)
                      ++++.+.+.+.
T Consensus       348 I~~~~~~L~~~  358 (442)
T TIGR00450       348 IKALVDLLTQK  358 (442)
T ss_pred             HHHHHHHHHHH
Confidence            77766555443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.9e-05  Score=71.31  Aligned_cols=101  Identities=19%  Similarity=0.191  Sum_probs=70.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHH----HHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p----~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~----~~~~~~  173 (275)
                      +-||| .-....+..-.+-.|..|+|+++..|    .+..+....+.+.-+.+++|-||+||+++++..+    ..++++
T Consensus        92 DaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk  170 (415)
T COG5257          92 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK  170 (415)
T ss_pred             eCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhc
Confidence            45999 44445555556778999999999865    2222333345555788999999999998764322    222222


Q ss_pred             H---cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          174 K---QGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      .   .+..++++||..+.+++.|.++|.+..+.
T Consensus       171 Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         171 GTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             ccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            1   23579999999999999999999887653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=98.10  E-value=6.3e-06  Score=65.64  Aligned_cols=82  Identities=21%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             HHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~g  187 (275)
                      ..++++.++.++|....       .......+..... +.|+++|+||+|+............+... ...++++||+++
T Consensus        70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  149 (161)
T TIGR00231        70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETG  149 (161)
T ss_pred             HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCC
Confidence            34556666666665443       1111222333333 67999999999997643223333333333 356899999999


Q ss_pred             cchhhHHHHHH
Q 023932          188 MGTMKLSRLAK  198 (275)
Q Consensus       188 ~Gi~~L~~~i~  198 (275)
                      .|+.++.++|.
T Consensus       150 ~gv~~~~~~l~  160 (161)
T TIGR00231       150 KNIDSAFKIVE  160 (161)
T ss_pred             CCHHHHHHHhh
Confidence            99999888764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.10  E-value=1.6e-06  Score=80.02  Aligned_cols=50  Identities=30%  Similarity=0.397  Sum_probs=39.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE--EE-----EEEeeccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY--VS-----QFFLLKYHQK  269 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~--v~-----~~~~~~~~~~  269 (275)
                      .|++||.||+|||||||++...+ .+++++|+||.....  |+     .|+.++.|+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGL  217 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGL  217 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccc
Confidence            58999999999999999999765 999999999976532  22     3566665553

>cd04177 RSR1 RSR1 subgroup

Probab=98.08  E-value=1.8e-05  Score=65.66  Aligned_cols=95  Identities=12%  Similarity=-0.041  Sum_probs=59.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      .||+. ++.......++.+|.+++|+|..++.+...     ..+.+..  .+.|+++|.||+|+.....  .++.....+
T Consensus        56 t~G~~-~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~  134 (168)
T cd04177          56 TAGTE-QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ  134 (168)
T ss_pred             CCCcc-cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH
Confidence            34542 233344456788999999999876532211     1111111  1679999999999864321  122222233


Q ss_pred             HcC-CeeEEecCccccchhhHHHHHH
Q 023932          174 KQG-TKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       174 ~~g-~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      +.+ ..++.+||+++.|++++.+.+.
T Consensus       135 ~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177         135 QWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             HcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            444 6789999999999998877654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.06  E-value=2.4e-05  Score=65.37  Aligned_cols=99  Identities=12%  Similarity=-0.048  Sum_probs=61.5

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~  173 (275)
                      .||+. .........+..+|.+++|+|..+..+...  .   .+.+..  .+.|+++|+||+|+.....  .........
T Consensus        56 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~  134 (180)
T cd04137          56 TAGQD-EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE  134 (180)
T ss_pred             CCChH-hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH
Confidence            45652 222233356788999999999876432111  1   111111  1569999999999864221  112222233


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+..++.+||+++.|+.++.+.+.+...
T Consensus       135 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (180)
T cd04137         135 SWGAAFLESSARENENVEEAFELLIEEIE  163 (180)
T ss_pred             HcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            44567899999999999999888766544

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.06  E-value=6.1e-06  Score=67.01  Aligned_cols=49  Identities=33%  Similarity=0.601  Sum_probs=38.5

Q ss_pred             EEEEeeCCCChhHHHHHHhc-CCccccCCCCcccccceEEE---EEEeecccc
Q 023932          220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKYVS---QFFLLKYHQ  268 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~-~~~~~vs~~pGtTr~~~~v~---~~~~~~~~~  268 (275)
                      |+++|.+|+|||||+|+|.+ ......++.+|+|+....+.   .+.+.++++
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g   54 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPG   54 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCC
Confidence            78999999999999999994 44466888899998876655   345566665

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=2.7e-05  Score=73.61  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCC---cHHH
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTT---HPLM  141 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~---d~~l  141 (275)
                      |.-++|++..-.++..+..+.+...  .|=+-||| ..+.+.+-.-+.+||+.|+|||++.+       ....   +..+
T Consensus        61 D~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L  139 (428)
T COG5256          61 DKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL  139 (428)
T ss_pred             cCChhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence            3345555555566666665555444  34567996 88888888888999999999999987       2222   2334


Q ss_pred             HHHhcCCCeEEEEEcccCcCHHH--HHHH---HHHHH-HcC-----CeeEEecCccccchhh
Q 023932          142 DQWLGNRKRILVLNREDMISMAD--RNAW---ATYFA-KQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       142 ~~~L~~kp~IlVlNK~Dl~~~~~--~~~~---~~~~~-~~g-----~~vi~iSak~g~Gi~~  192 (275)
                      .+.+.-..+|+++||+|+++..+  .++.   +..+. ..|     ..++++|+.+|.++.+
T Consensus       140 a~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         140 ARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            55555668899999999986432  1222   22232 334     3589999999999854

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=4.6e-05  Score=62.42  Aligned_cols=94  Identities=15%  Similarity=0.051  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHHHHHhhcCeEEEEEeCCCC--CCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHH-----HHH
Q 023932          105 GHIAKTEKELKDQLKLMDVVIEVRDARIP--LSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWA-----TYF  172 (275)
Q Consensus       105 G~~~~~~k~l~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~-----~~~  172 (275)
                      +.|...|+.   ++++.|.||||||..+-  .+....++...|.     +...++++||.|........+..     ..+
T Consensus        73 tSirPyWRc---Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L  149 (182)
T KOG0072|consen   73 TSIRPYWRC---YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL  149 (182)
T ss_pred             ccccHHHHH---HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH
Confidence            346677776   88999999999998643  3333344444443     56788899999986543333322     233


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +++-..++..||.+|.|++...+++.+-.
T Consensus       150 k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l  178 (182)
T KOG0072|consen  150 KDRIWQIVKTSAVKGEGLDPAMDWLQRPL  178 (182)
T ss_pred             hhheeEEEeeccccccCCcHHHHHHHHHH
Confidence            34446789999999999999999987644

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=1.2e-05  Score=80.28  Aligned_cols=101  Identities=25%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH------H----------
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM------A----------  163 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~------~----------  163 (275)
                      +.||| ..+...-..-...||++|+|+|..+++...-.+-+.+|+  +.|+||.+||+|.+-.      .          
T Consensus       546 dtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  546 DTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             cCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            45887 333332223457899999999999987776666566666  7799999999996411      0          


Q ss_pred             --HHHH-------HHHHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhch
Q 023932          164 --DRNA-------WATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       164 --~~~~-------~~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                        ..++       ....|.++|               +.++++||.+|.|+.+|.-+|.++...
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk  688 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence              1111       122233333               257899999999999999888777653

>cd04135 Tc10 TC10 subfamily

Probab=98.03  E-value=1.1e-05  Score=66.90  Aligned_cols=82  Identities=15%  Similarity=0.000  Sum_probs=53.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHcC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQG  176 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~g  176 (275)
                      .+..+|++++|+|..++.+..+.  .+...+    .+.|+++|.||+|+.+....              +......++.+
T Consensus        68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  147 (174)
T cd04135          68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG  147 (174)
T ss_pred             cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence            46889999999998776432221  122222    37899999999998643211              11112223344


Q ss_pred             C-eeEEecCccccchhhHHHHHH
Q 023932          177 T-KVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       177 ~-~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      . .++.+||++|.|++++.+.+.
T Consensus       148 ~~~~~e~Sa~~~~gi~~~f~~~~  170 (174)
T cd04135         148 AHCYVECSALTQKGLKTVFDEAI  170 (174)
T ss_pred             CCEEEEecCCcCCCHHHHHHHHH
Confidence            3 688999999999999877654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01861 Rab6 Rab6 subfamily

Probab=98.03  E-value=6e-06  Score=67.42  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      |++++|.+|||||||||+|++.+ ...+..|++|.+..
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~   38 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFL   38 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEE
Confidence            68999999999999999999876 44466777776653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR00092 GTP-binding protein YchF

Probab=98.02  E-value=4.2e-06  Score=78.81  Aligned_cols=42  Identities=36%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ++++|||.||||||||+|+|++.....+++.|+||.+...-.
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~   44 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGV   44 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeE
Confidence            679999999999999999999887448899999998876633

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=97.99  E-value=1.5e-05  Score=70.67  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             CCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       148 kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +|.++|+||+|+.+..+...    +.+ ...++++||+++.|+++|.+.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~~~~~~~~----~~~-~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLISIEELDL----LAR-QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCCHHHHHH----Hhc-CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            48999999999987765443    222 24588999999999999998876644

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.99  E-value=4.1e-05  Score=67.46  Aligned_cols=103  Identities=15%  Similarity=0.047  Sum_probs=62.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+..        . ..+.......+..+|++|+|+|..++.+..+.  .+...    ..+.|++||.||+||..
T Consensus        49 v~L~iwDt~G--------~-e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~  119 (222)
T cd04173          49 IELNMWDTSG--------S-SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT  119 (222)
T ss_pred             EEEEEEeCCC--------c-HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence            4577787543        2 22222223457899999999999876433221  11111    12679999999999954


Q ss_pred             HHH--------------HHHHHHHHHHcC-CeeEEecCccccc-hhhHHHHHHH
Q 023932          162 MAD--------------RNAWATYFAKQG-TKVIFSNGQLGMG-TMKLSRLAKA  199 (275)
Q Consensus       162 ~~~--------------~~~~~~~~~~~g-~~vi~iSak~g~G-i~~L~~~i~~  199 (275)
                      ...              .++-....++.+ ..++.+||+++.+ ++++......
T Consensus       120 ~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~  173 (222)
T cd04173         120 DLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV  173 (222)
T ss_pred             chhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence            210              011112223345 4799999999884 9888765444

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=97.99  E-value=1.1e-05  Score=74.05  Aligned_cols=51  Identities=29%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      .-|++|||+|+|||||||+|.+ ..+...+.-+-|.|+....       .+++.+++||
T Consensus       179 pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGF  236 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGF  236 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhccCCCCcEEEEeechhh
Confidence            4699999999999999999994 3355566666676665443       4677777776

>cd01882 BMS1 Bms1

Probab=97.98  E-value=5.2e-05  Score=66.81  Aligned_cols=82  Identities=22%  Similarity=0.241  Sum_probs=55.3

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHH-HHHHHHHH----HH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMA-DRNAWATY----FA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~-~~~~~~~~----~~  173 (275)
                      +.||++    ..+.+.++.+|++++|+|++.+....+..+..++.  +.|.+ +|+||+|+.... ..++..+.    +.
T Consensus        89 DtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~  164 (225)
T cd01882          89 ECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW  164 (225)
T ss_pred             eCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence            457765    45556679999999999999877766666666664  56755 499999997432 22222222    22


Q ss_pred             -H--cCCeeEEecCccc
Q 023932          174 -K--QGTKVIFSNGQLG  187 (275)
Q Consensus       174 -~--~g~~vi~iSak~g  187 (275)
                       +  .+.+++++||++.
T Consensus       165 ~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         165 TEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             HhhCCCCcEEEEeeccC
Confidence             1  1357999998876

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=97.96  E-value=4.4e-05  Score=76.51  Aligned_cols=80  Identities=21%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHH-HHHhc-CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l-~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      +.+|++++|+|+.+..  .+..+ .+... ++|+++|+||+|+..+.......+.+ ++.+.+++++||++|.|++++.+
T Consensus        71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            4799999999998632  22222 22222 78999999999986543222112233 23467899999999999999998


Q ss_pred             HHHHH
Q 023932          196 LAKAL  200 (275)
Q Consensus       196 ~i~~l  200 (275)
                      .+.+.
T Consensus       149 ~i~~~  153 (591)
T TIGR00437       149 AIRKA  153 (591)
T ss_pred             HHHHH
Confidence            87654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.96  E-value=6.4e-06  Score=74.16  Aligned_cols=57  Identities=23%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc----ccceEEE--EEEeeccccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLKYVS--QFFLLKYHQKCK  271 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT----r~~~~v~--~~~~~~~~~~~~  271 (275)
                      ..++.+.++|.+|+|||||||+|...+...|+.++-+|    +..+.+.  .+.+.+++|+=+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd   99 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD   99 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCccc
Confidence            35789999999999999999999977766777666333    4444443  578888887643

>cd04171 SelB SelB subfamily

Probab=97.95  E-value=1e-05  Score=65.97  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCcccc--CCCCcccccceE
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKY  257 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~v--s~~pGtTr~~~~  257 (275)
                      .++++|.+|||||||+|+|.+......  ...+|+|.+...
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~   42 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF   42 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee
Confidence            589999999999999999997542222  235688877654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.95  E-value=1.2e-05  Score=70.92  Aligned_cols=56  Identities=18%  Similarity=0.139  Sum_probs=41.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC-CccccC-CCCcccccceEE---------EEEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR-RMCPAA-PRPGVTRVLKYV---------SQFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~-~~~~vs-~~pGtTr~~~~v---------~~~~~~~~~~~~~~  272 (275)
                      -.-|+|+|.+++|||||||.|++. ....++ ..+.||+++...         ...++++++|+-..
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~   73 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR   73 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence            356899999999999999999987 234444 457899976533         34678888876543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.92  E-value=3e-05  Score=64.26  Aligned_cols=82  Identities=15%  Similarity=-0.012  Sum_probs=53.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcC--HHHH--HHHHHHHHHc-CCeeEEecC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMIS--MADR--NAWATYFAKQ-GTKVIFSNG  184 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~--~~~~--~~~~~~~~~~-g~~vi~iSa  184 (275)
                      +.+.+|.+++|+|..+..+..+ ..+...+      .+.|+++|.||+|+..  ..++  ++..++.++. +..++.+||
T Consensus        62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  141 (158)
T cd04103          62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA  141 (158)
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence            4578999999999987654433 1222222      2469999999999842  1111  1112222233 367999999


Q ss_pred             ccccchhhHHHHHH
Q 023932          185 QLGMGTMKLSRLAK  198 (275)
Q Consensus       185 k~g~Gi~~L~~~i~  198 (275)
                      ++|.|++++.+.+.
T Consensus       142 k~~~~i~~~f~~~~  155 (158)
T cd04103         142 TYGLNVERVFQEAA  155 (158)
T ss_pred             CCCCCHHHHHHHHH
Confidence            99999999877654

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.91  E-value=2.5e-05  Score=75.00  Aligned_cols=98  Identities=18%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--c-CCCeEEEEEcccCcCHHHHHHHHHHHHH-cC-
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G-NRKRILVLNREDMISMADRNAWATYFAK-QG-  176 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g-  176 (275)
                      +.|||. .+.-+.-+.++.|.-.|+||||..+....-. -.-|+  . +..++-|+||+||...+ .+.....+.. .| 
T Consensus        82 DTPGHV-DFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~iGi  158 (603)
T COG0481          82 DTPGHV-DFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIGI  158 (603)
T ss_pred             CCCCcc-ceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhCC
Confidence            568993 4444555678889999999999987654321 11222  2 67899999999996532 2223233322 24 


Q ss_pred             --CeeEEecCccccchhhHHHHHHHHhc
Q 023932          177 --TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       177 --~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                        .+.+.+|||+|.|++++++.|.+..+
T Consensus       159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         159 DASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             CcchheeEecccCCCHHHHHHHHHhhCC
Confidence              36889999999999999888765543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.89  E-value=6.3e-05  Score=68.21  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=47.3

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      =+.|||. .+..+....++.+|++++|+|+..+.......+.+.+.  ++|+++++||+|+..
T Consensus        69 iDTPG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~  130 (270)
T cd01886          69 IDTPGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             EECCCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            3568985 46667888999999999999998876655555555544  789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04129 Rho2 Rho2 subfamily

Probab=97.88  E-value=3.5e-05  Score=65.32  Aligned_cols=84  Identities=17%  Similarity=0.023  Sum_probs=53.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH------------HHHHHHHHHHHcC-C
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA------------DRNAWATYFAKQG-T  177 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~------------~~~~~~~~~~~~g-~  177 (275)
                      .+..+|.+++++|.....+..+.  .+...+    .+.|+++|.||+|+....            ..+......++.+ .
T Consensus        69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (187)
T cd04129          69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK  148 (187)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence            45889999999998765322211  122222    267999999999985311            0111222223344 3


Q ss_pred             eeEEecCccccchhhHHHHHHHH
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .++.+||++|.|++++.+.+.+.
T Consensus       149 ~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129         149 KYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHH
Confidence            78999999999999998877643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.87  E-value=1.5e-05  Score=65.99  Aligned_cols=34  Identities=38%  Similarity=0.541  Sum_probs=28.4

Q ss_pred             EEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      |+|+|..++|||||||+|++...+.++..|.|..
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~   34 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAV   34 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSS
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccc
Confidence            6899999999999999999988777777775543

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01868 Rab11_like Rab11-like

Probab=97.87  E-value=1.8e-05  Score=65.01  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=22.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++++|.||||||||+|+|.+.+
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~   27 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNE   27 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            589999999999999999999765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=9.6e-05  Score=63.00  Aligned_cols=97  Identities=12%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      -.+.+||+..         |..+..-.+.+++.+.-+|+|.|.....+..  .+..||.        |..++|+.||+||
T Consensus        55 IKlqiwDtaG---------qe~frsv~~syYr~a~GalLVydit~r~sF~--hL~~wL~D~rq~~~~NmvImLiGNKsDL  123 (216)
T KOG0098|consen   55 IKLQIWDTAG---------QESFRSVTRSYYRGAAGALLVYDITRRESFN--HLTSWLEDARQHSNENMVIMLIGNKSDL  123 (216)
T ss_pred             EEEEEEecCC---------cHHHHHHHHHHhccCcceEEEEEccchhhHH--HHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence            4577787654         5778888889999999999999986543332  2333332        6788999999999


Q ss_pred             cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ....++  ++-..+.++.|+-++.+||++++|+++...
T Consensus       124 ~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen  124 EARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             hccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            754322  233334456778788999999999987644

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.83  E-value=2e-05  Score=64.69  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=29.9

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .++|+|.+|+|||||+|+|.+.. ......+++|++..
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~   38 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIG   38 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeec
Confidence            48999999999999999999765 44456678887664

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04167 Snu114p Snu114p subfamily

Probab=97.82  E-value=0.00011  Score=63.81  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=42.7

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCc
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~  160 (275)
                      +.|||. ++.......+..+|++++|+|+..........+.+.+  .++|+++|+||+|++
T Consensus        77 DtpG~~-~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          77 DTPGHV-NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             ECCCCc-chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            357873 4556677788999999999999877654443433333  268999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.81  E-value=0.00014  Score=62.95  Aligned_cols=86  Identities=12%  Similarity=-0.043  Sum_probs=56.8

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      ...+..++.+++|+|.....+..+. .    +.....+.|+++|.||+|+.......+...+....+..++.+|+++|.|
T Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  155 (215)
T PTZ00132         76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYN  155 (215)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            3456789999999998765432211 1    1112236789999999998643222233334444567889999999999


Q ss_pred             hhhHHHHHHHH
Q 023932          190 TMKLSRLAKAL  200 (275)
Q Consensus       190 i~~L~~~i~~l  200 (275)
                      ++++...|...
T Consensus       156 v~~~f~~ia~~  166 (215)
T PTZ00132        156 FEKPFLWLARR  166 (215)
T ss_pred             HHHHHHHHHHH
Confidence            98877665543

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.81  E-value=2.4e-05  Score=63.85  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +||+++|.||+|||||+|+|++..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~   24 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGK   24 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999765

Rab GTPases are implicated in vesicle trafficking.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=97.81  E-value=6.4e-05  Score=60.84  Aligned_cols=106  Identities=11%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHhc-CCCeEEEEEc
Q 023932           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNR  156 (275)
Q Consensus        83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L~-~kp~IlVlNK  156 (275)
                      ..+....+.+|++..         ++++..-+..+++++|.++++.|..+..+..+.+     +.++-. ...+.++.||
T Consensus        42 ~~~~kvklqiwdtag---------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk  112 (192)
T KOG0083|consen   42 MDDKKVKLQIWDTAG---------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNK  112 (192)
T ss_pred             cCCcEEEEEEeeccc---------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccc
Confidence            344556789998765         5677777778899999999999998765544321     122222 4578899999


Q ss_pred             ccCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHH
Q 023932          157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       157 ~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i  197 (275)
                      +|+.....  .+.-.......++++..+||++|.+++.-.-.|
T Consensus       113 ~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i  155 (192)
T KOG0083|consen  113 CDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI  155 (192)
T ss_pred             cccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence            99975321  111112223457899999999999987544333

>cd00876 Ras Ras family

Probab=97.81  E-value=2e-05  Score=63.81  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      |++|+|.+|||||||+|+|++..  ..+..+.+|.+.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~   35 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDS   35 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHe
Confidence            58999999999999999999765  344455566644

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK12739 elongation factor G; Reviewed

Probab=97.78  E-value=0.0002  Score=73.07  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=53.2

Q ss_pred             EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932           91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus        91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|++....+=+.|||.. +..++...++.+|++|+|+|+..+....+..+..++.  ++|.|+++||+|+..
T Consensus        68 ~~~~~~~i~liDTPG~~~-f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         68 CFWKGHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             EEECCEEEEEEcCCCHHH-HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            344433334456799964 5567888999999999999999887766666666554  789999999999875

>cd01863 Rab18 Rab18 subfamily

Probab=97.77  E-value=3e-05  Score=63.38  Aligned_cols=39  Identities=31%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~  256 (275)
                      +|++++|.+|||||||+|+|++.... ...+.+|.+....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~   40 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVK   40 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEE
Confidence            37999999999999999999976533 3556666655443

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04155 Arl3 Arl3 subfamily

Probab=97.76  E-value=4.5e-05  Score=63.14  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=29.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      ...+++++|.+|||||||+|+|.+.......+..|.+.
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~   50 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI   50 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce
Confidence            36789999999999999999999875544555556443

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00154 Rab Rab family

Probab=97.74  E-value=3.2e-05  Score=61.99  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=28.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcccc-CCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v-s~~pGtTr~~~  256 (275)
                      +|++++|.+|||||||+|+|.+...... .+..|.+....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~   40 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSK   40 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEE
Confidence            3799999999999999999997664443 33444444433

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.72  E-value=9.3e-05  Score=60.48  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ...++++|.+|+++|..+..+...  +..|+       . +.|+++|.||.|+....  ..++..++..+.+..++.+|+
T Consensus        66 ~~~~~~~~~~ii~fd~~~~~S~~~--~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa  143 (162)
T PF00071_consen   66 DIFYRNSDAIIIVFDVTDEESFEN--LKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSA  143 (162)
T ss_dssp             HHHHTTESEEEEEEETTBHHHHHT--HHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBT
T ss_pred             cccccccccccccccccccccccc--cccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEEC
Confidence            356899999999999876533222  22222       2 47899999999987632  223344455566788999999


Q ss_pred             ccccchhhHHHHH
Q 023932          185 QLGMGTMKLSRLA  197 (275)
Q Consensus       185 k~g~Gi~~L~~~i  197 (275)
                      +++.|+.++...+
T Consensus       144 ~~~~~v~~~f~~~  156 (162)
T PF00071_consen  144 KNGENVKEIFQEL  156 (162)
T ss_dssp             TTTTTHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            9999998876544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=2e-05  Score=73.68  Aligned_cols=26  Identities=54%  Similarity=0.839  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      .++++|||.||||||||+|+|++...
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a   27 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGA   27 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCc
Confidence            35799999999999999999996543

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.71  E-value=4.2e-05  Score=62.52  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=28.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccc-cCCCCcccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTR  253 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~-vs~~pGtTr  253 (275)
                      .|++++|.+|||||||+|+|++.+... ..+..|.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   38 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF   38 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            589999999999999999999876443 455555433

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.69  E-value=7.2e-05  Score=60.98  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      |++++|.+|||||||+|++.+.......+..|.+.+.
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~   37 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET   37 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE
Confidence            5899999999999999999987744555555555443

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=97.69  E-value=4.7e-05  Score=61.96  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      |++++|.||||||||+|+|+....  +.+..+++.+.
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~   36 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADS   36 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhh
Confidence            789999999999999999996542  23445555443

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=97.68  E-value=5.5e-05  Score=61.77  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      +|++++|.+|||||||+|++++..  .++..+.++++
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~   37 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIED   37 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccc
Confidence            689999999999999999999754  24455556554

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=97.68  E-value=0.00022  Score=58.77  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcc
Q 023932           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNRE  157 (275)
Q Consensus        85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~  157 (275)
                      .....+.+|++..         ++.+...+-.+.+..+.++.|.|..+..+..+  ..+||.       ..|-++|.||.
T Consensus        54 G~~VkLqIwDtAG---------qErFrtitstyyrgthgv~vVYDVTn~ESF~N--v~rWLeei~~ncdsv~~vLVGNK~  122 (198)
T KOG0079|consen   54 GDRVKLQIWDTAG---------QERFRTITSTYYRGTHGVIVVYDVTNGESFNN--VKRWLEEIRNNCDSVPKVLVGNKN  122 (198)
T ss_pred             CcEEEEEEeeccc---------HHHHHHHHHHHccCCceEEEEEECcchhhhHh--HHHHHHHHHhcCccccceecccCC
Confidence            3446789999765         45566666678899999999999988765543  334432       46899999999


Q ss_pred             cCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       158 Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      |+.....  .+....+...+|++.+.+|++...+++.....|.+.
T Consensus       123 d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen  123 DDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             CCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            9876532  123334455678999999999999999877666543

>PLN03118 Rab family protein; Provisional

Probab=97.68  E-value=7.5e-05  Score=64.59  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      .+|++|+|.+|||||||+|+|+.......++..|.+..
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~   51 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFK   51 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEE
Confidence            57999999999999999999998765555565555443

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.68  E-value=0.00026  Score=62.39  Aligned_cols=58  Identities=26%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      +.||| ..+...+...++.+|.+++|+|+..+.......+.+...  ++|+++|+||+|+.
T Consensus        79 DTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          79 DSPGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             CCCCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            46898 457778888999999999999999877655544444432  68999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.68  E-value=0.00029  Score=64.94  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhh-cCeEEEEEeCCCCCCCC-cHH--HHHHhc---CCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeE
Q 023932          109 KTEKELKDQLKL-MDVVIEVRDARIPLSTT-HPL--MDQWLG---NRKRILVLNREDMISMADRNAWATYFAKQG-TKVI  180 (275)
Q Consensus       109 ~~~k~l~~~l~~-aDlVI~VvDar~p~s~~-d~~--l~~~L~---~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi  180 (275)
                      ...++.--+++. .++|+|++|.+.--... +.+  +.+.+.   ++|+++|+||+|....+..++...++...+ ...+
T Consensus       235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~  314 (346)
T COG1084         235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPL  314 (346)
T ss_pred             HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcccccc
Confidence            444444444444 68999999997532221 112  222222   579999999999997777666666665555 3467


Q ss_pred             EecCccccchhhHHHHHHHH
Q 023932          181 FSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+++..+.+.+.+.+.+...
T Consensus       315 ~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         315 KISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             ceeeeehhhHHHHHHHHHHH
Confidence            88888899988887766654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.67  E-value=2.5e-05  Score=77.83  Aligned_cols=112  Identities=22%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             EEEEeCCCccccccchhH-----HHHHHHHHHHH--hhcCeEEEEEeCCCCCCCCcHHH-HHHhc-CCCeEEEEEcccCc
Q 023932           90 LYYWTKSLRPVQWYPGHI-----AKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMI  160 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~-----~~~~k~l~~~l--~~aDlVI~VvDar~p~s~~d~~l-~~~L~-~kp~IlVlNK~Dl~  160 (275)
                      .+....+...+-++||--     ..-.+-.++.+  ++.|+|+.|+|+.+-.  ++..+ .+++. ++|.++++|++|..
T Consensus        44 ~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe--RnLyltlQLlE~g~p~ilaLNm~D~A  121 (653)
T COG0370          44 KLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE--RNLYLTLQLLELGIPMILALNMIDEA  121 (653)
T ss_pred             EEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH--HHHHHHHHHHHcCCCeEEEeccHhhH
Confidence            344333334455677642     22233344444  5679999999997532  22111 22233 89999999999987


Q ss_pred             CHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          161 SMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       161 ~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      .+.-+.--.+.+ +..|.+++++||++|+|+++|++.+.+..++
T Consensus       122 ~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         122 KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES  165 (653)
T ss_pred             HhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence            553211111222 3468999999999999999999888765543

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.00018  Score=59.34  Aligned_cols=102  Identities=18%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHhcC-CCeEEEEEcccC
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLGN-RKRILVLNREDM  159 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l----~~~L~~-kp~IlVlNK~Dl  159 (275)
                      ....+.+|++..         ++++...+..+++.++.+|+|.|....++..+ +++    ..+..+ .-.|+|.||+|+
T Consensus        54 ekiklqiwdtag---------qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~  124 (213)
T KOG0095|consen   54 EKIKLQIWDTAG---------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL  124 (213)
T ss_pred             eEEEEEEeeccc---------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch
Confidence            445788999765         57788888899999999999999987666554 233    223223 245889999999


Q ss_pred             cCHHHHH-HHHHHHHH-cCCeeEEecCccccchhhHHHH
Q 023932          160 ISMADRN-AWATYFAK-QGTKVIFSNGQLGMGTMKLSRL  196 (275)
Q Consensus       160 ~~~~~~~-~~~~~~~~-~g~~vi~iSak~g~Gi~~L~~~  196 (275)
                      .+..++. ..-+.|.+ +..-++.+||+...+++.|...
T Consensus       125 ~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen  125 ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence            8764432 33344443 2334678999999999888543

>cd04154 Arl2 Arl2 subfamily

Probab=97.67  E-value=7.6e-05  Score=62.17  Aligned_cols=35  Identities=31%  Similarity=0.588  Sum_probs=27.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      ...+++++|.+|||||||+|+|.+.....+.+..|
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g   47 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLG   47 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc
Confidence            35789999999999999999999875444555444

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.66  E-value=5.2e-05  Score=61.83  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=27.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      +++++|.+|||||||+|++.+.......+..|.+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~   34 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN   34 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc
Confidence            4799999999999999999987765555544443

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.65  E-value=6e-05  Score=61.51  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|++++|.+|||||||+|+|++..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~   24 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGR   24 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999999765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=97.65  E-value=5.2e-05  Score=72.88  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccC------------------------C------CCcccccceEEE------
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------P------RPGVTRVLKYVS------  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs------------------------~------~pGtTr~~~~v~------  259 (275)
                      ..++++++|.+|+|||||+|+|+........                        +      .+|+|+|.....      
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            3578999999999999999999854433221                        1      689999997654      


Q ss_pred             EEEeeccccc
Q 023932          260 QFFLLKYHQK  269 (275)
Q Consensus       260 ~~~~~~~~~~  269 (275)
                      .+.+.+++|.
T Consensus        85 ~i~liDtpG~   94 (425)
T PRK12317         85 YFTIVDCPGH   94 (425)
T ss_pred             EEEEEECCCc
Confidence            2455666653

>cd01866 Rab2 Rab2 subfamily

Probab=97.62  E-value=7.3e-05  Score=61.97  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=22.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      .|++++|.||||||||+|++++...
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~   29 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRF   29 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            5899999999999999999997653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=97.62  E-value=7.5e-05  Score=61.47  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=25.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      .|++++|.+|||||||+|++.+.. ......|.++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~   36 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIG   36 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccc
Confidence            589999999999999999999754 3333344433

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=97.61  E-value=3.8e-05  Score=61.69  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      |++++|.+|||||||+|+|.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~   25 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI   25 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc
Confidence            689999999999999999997653

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.61  E-value=6.8e-05  Score=61.41  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ||+++|.+|||||||+|+|.+..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~   24 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGH   24 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            78999999999999999999765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.61  E-value=9.4e-05  Score=61.90  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=28.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ..+++++|.+|||||||+|+|.........+..|.+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~   50 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN   50 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence            468999999999999999999876655555555544

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00031  Score=65.29  Aligned_cols=98  Identities=21%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhcCCCeEEEEEcccCcCHHHHHH----HHHHHHH-
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK-  174 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~----~~~~~~~-  174 (275)
                      +-||| +..++.+..-..-.|+.++|+|+..+....  +..+...+..++.++|+||+|..++..++.    ....+++ 
T Consensus        76 DCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   76 DCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             eCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            45899 556666666667789999999997664332  222333344678999999999987754332    2222222 


Q ss_pred             ---cC----CeeEEecCccc----cchhhHHHHHHHH
Q 023932          175 ---QG----TKVIFSNGQLG----MGTMKLSRLAKAL  200 (275)
Q Consensus       175 ---~g----~~vi~iSak~g----~Gi~~L~~~i~~l  200 (275)
                         .+    .+++.+|++.|    +++.+|++.|.+-
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~  191 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR  191 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence               22    47899999999    7888888877653

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.61  E-value=3.7e-05  Score=72.44  Aligned_cols=24  Identities=58%  Similarity=0.922  Sum_probs=22.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++++|||.||||||||+|+|++.+
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~   26 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG   26 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999999755

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.60  E-value=0.00027  Score=62.81  Aligned_cols=59  Identities=24%  Similarity=0.253  Sum_probs=45.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.||| ..+.......++.+|.+++|+|+..+.......+.+++.  ++|+++++||+|+..
T Consensus        70 DTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~  130 (237)
T cd04168          70 DTPGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG  130 (237)
T ss_pred             eCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence            45888 445666778899999999999999876554444555443  789999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.60  E-value=0.00018  Score=69.09  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=71.9

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-Hhc-CCCeEEEEEcccCcCH---HH
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLG-NRKRILVLNREDMISM---AD  164 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~-~L~-~kp~IlVlNK~Dl~~~---~~  164 (275)
                      -+.|......|-+.||| +.+--+..+.+.-.|-|++||||..++...-..... .|. +.+.|+|+||+|....   ..
T Consensus        62 av~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~V  140 (603)
T COG1217          62 AVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEV  140 (603)
T ss_pred             eeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHH
Confidence            44555544556678999 677778888999999999999999987776555433 333 7789999999998643   34


Q ss_pred             HHHHHHHHHHcC-------CeeEEecCcccc
Q 023932          165 RNAWATYFAKQG-------TKVIFSNGQLGM  188 (275)
Q Consensus       165 ~~~~~~~~~~~g-------~~vi~iSak~g~  188 (275)
                      +++..+.|.+.+       +++++.|+..|.
T Consensus       141 vd~vfDLf~~L~A~deQLdFPivYAS~~~G~  171 (603)
T COG1217         141 VDEVFDLFVELGATDEQLDFPIVYASARNGT  171 (603)
T ss_pred             HHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence            556666666543       578899988774

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.59  E-value=0.00011  Score=62.26  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=25.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP  247 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~  247 (275)
                      ..+++++|.+|||||||+|+|.+.....+.+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~   47 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP   47 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCC
Confidence            4789999999999999999999765333333

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.59  E-value=7.3e-05  Score=70.63  Aligned_cols=43  Identities=23%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc-----CCccccCCCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~-----~~~~~vs~~pGtTr~~~~v~  259 (275)
                      .+++|+|+|.+|+|||||||+|.+     ...+.|+. ..||.....+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~   81 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYP   81 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCC
Confidence            367899999999999999999986     23344443 35777776655

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd04157 Arl6 Arl6 subfamily

Probab=97.59  E-value=8e-05  Score=60.67  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=26.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC--ccccCCCCcccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTR  253 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~--~~~vs~~pGtTr  253 (275)
                      +|+++|.+|||||||+|+|.+..  .....+..|.+.
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~   37 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV   37 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce
Confidence            47899999999999999999753  223455566543

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.58  E-value=8.7e-05  Score=60.15  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||+|+|++.+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~   25 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNH   25 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999999765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.57  E-value=0.00047  Score=64.38  Aligned_cols=114  Identities=10%  Similarity=-0.028  Sum_probs=66.8

Q ss_pred             chhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-hcCCCeEE
Q 023932           74 IEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRIL  152 (275)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-L~~kp~Il  152 (275)
                      +.....-........|++.-++.... +           ........+|++++|++.   .+..+.+.... .....-++
T Consensus       135 ~~~~~~~~~~~~~g~d~viieT~Gv~-q-----------s~~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIi  199 (332)
T PRK09435        135 RKTRETMLLCEAAGYDVILVETVGVG-Q-----------SETAVAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLI  199 (332)
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCc-c-----------chhHHHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheE
Confidence            33344444455556788877754322 1           111246789999999752   22222222111 11234599


Q ss_pred             EEEcccCcCHHHHHHHHHHHHH---c--------CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          153 VLNREDMISMADRNAWATYFAK---Q--------GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       153 VlNK~Dl~~~~~~~~~~~~~~~---~--------g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      |+||+|+.+..........+.+   .        ..+++++||+++.|+++|.+.|.++.+
T Consensus       200 VVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        200 VINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             EeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9999999865433222222221   1        136899999999999999998877643

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=97.57  E-value=9.8e-05  Score=61.42  Aligned_cols=107  Identities=19%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hc-CCCeEEEE
Q 023932           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LG-NRKRILVL  154 (275)
Q Consensus        83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-------L~-~kp~IlVl  154 (275)
                      .++-.+++-+||+..         ++++...-.-+++.++-+|+|.|..+..+..  .+..|       +. ..-++||.
T Consensus        57 ~ed~ra~L~IWDTAG---------QErfHALGPIYYRgSnGalLVyDITDrdSFq--KVKnWV~Elr~mlGnei~l~IVG  125 (218)
T KOG0088|consen   57 VEDCRADLHIWDTAG---------QERFHALGPIYYRGSNGALLVYDITDRDSFQ--KVKNWVLELRTMLGNEIELLIVG  125 (218)
T ss_pred             cccceeeeeeeeccc---------hHhhhccCceEEeCCCceEEEEeccchHHHH--HHHHHHHHHHHHhCCeeEEEEec
Confidence            344567899999654         1222211122468899999999987653332  22233       22 46789999


Q ss_pred             EcccCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          155 NREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       155 NK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ||+||.....  .++...|....|..++.+||+.+.|+.+|.+.+-..
T Consensus       126 NKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~  173 (218)
T KOG0088|consen  126 NKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAK  173 (218)
T ss_pred             CcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHH
Confidence            9999965432  344555555667778999999999999998766543

>cd04169 RF3 RF3 subfamily

Probab=97.57  E-value=0.00039  Score=62.97  Aligned_cols=60  Identities=18%  Similarity=0.124  Sum_probs=44.1

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      +.||| ..+.......++.+|.+|+|+|+..+.......+.+++.  ++|+++++||+|+...
T Consensus        77 DTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          77 DTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR  138 (267)
T ss_pred             ECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence            46887 345566777889999999999998765443334444443  7899999999998643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12740 elongation factor G; Reviewed

Probab=97.56  E-value=0.00047  Score=70.07  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=44.4

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|||. .+...+...+..+|++++|+|+..+.......+...+.  ++|+++|+||+|+..
T Consensus        66 DtPG~~-~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         66 DTPGHV-DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             ECCCcH-HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            468884 45566777889999999999998876554444444443  789999999999863

>cd00879 Sar1 Sar1 subfamily

Probab=97.56  E-value=0.00014  Score=61.44  Aligned_cols=29  Identities=24%  Similarity=0.483  Sum_probs=24.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP  244 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~  244 (275)
                      +..+++++|.+|||||||+|+|.+.....
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~   46 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ   46 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence            35689999999999999999999765433

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=97.56  E-value=5.2e-05  Score=73.17  Aligned_cols=41  Identities=34%  Similarity=0.483  Sum_probs=35.5

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .+..-+..++|+|||||||++|.+...+ +.|.|.|+||+.+
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL  205 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLL  205 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchh
Confidence            3445689999999999999999998665 8999999999876

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.55  E-value=7.6e-05  Score=68.69  Aligned_cols=146  Identities=13%  Similarity=0.103  Sum_probs=97.8

Q ss_pred             eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCc--cEEEEeCCCccccccchhHHHH------HHHHHHHHhhcC
Q 023932           51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDA--DLYYWTKSLRPVQWYPGHIAKT------EKELKDQLKLMD  122 (275)
Q Consensus        51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~i~~~pG~~~~~------~k~l~~~l~~aD  122 (275)
                      ++..||.  |+..|+++.+...-..+.-..-.|-++..  ..+..++....+=+.||...-+      -+++...+++||
T Consensus        65 ~v~lVGf--PsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD  142 (365)
T COG1163          65 TVALVGF--PSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD  142 (365)
T ss_pred             EEEEEcC--CCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence            6677775  55679999998887777777767665433  5566555444455668765321      256667789999


Q ss_pred             eEEEEEeCCCCCCC------------------------------------------CcHH-HHHHhc-------------
Q 023932          123 VVIEVRDARIPLST------------------------------------------THPL-MDQWLG-------------  146 (275)
Q Consensus       123 lVI~VvDar~p~s~------------------------------------------~d~~-l~~~L~-------------  146 (275)
                      +||+|+|+..+...                                          .+.. +..+|.             
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            99999997644321                                          1111 111111             


Q ss_pred             ----------------CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          147 ----------------NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       147 ----------------~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                                      -+|.|+|+||+|+.+.++.....+.     .+.+++||+.+.|+++|++.|-..+.-
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-----~~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-----PNSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-----cceEEEecccCCCHHHHHHHHHHhhCe
Confidence                            1589999999999986554333222     278999999999999999887665543

>PRK13351 elongation factor G; Reviewed

Probab=97.54  E-value=0.0006  Score=69.56  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=45.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|||. .+.......++.+|.+++|+|+..+.......+...+.  ++|+++|+||+|+..
T Consensus        79 DtPG~~-df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         79 DTPGHI-DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG  139 (687)
T ss_pred             ECCCcH-HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence            468884 46667778899999999999998876555444444443  789999999999874

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.54  E-value=0.00014  Score=59.80  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +++++|.+|||||||+|+|...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhh
Confidence            4789999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.52  E-value=0.00019  Score=57.51  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=24.9

Q ss_pred             EEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      ++++|.+|||||||+|+|.+.. ......|.+..+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~   35 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFN   35 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcc
Confidence            7899999999999999999764 333334433333

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK00007 elongation factor G; Reviewed

Probab=97.52  E-value=0.00041  Score=70.84  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHH
Q 023932           91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAW  168 (275)
Q Consensus        91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~  168 (275)
                      +.|.+....+=+.|||.. +..++...+..+|++++|+|+..+....+..+..++.  ++|.|+++||+|+.... ..+.
T Consensus        70 ~~~~~~~~~liDTPG~~~-f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~  147 (693)
T PRK00007         70 CFWKDHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRV  147 (693)
T ss_pred             EEECCeEEEEEeCCCcHH-HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHH
Confidence            445443334456799964 5557888899999999999999888777777776664  78999999999998543 2233


Q ss_pred             HHHHHH-cC----CeeEEecCccc
Q 023932          169 ATYFAK-QG----TKVIFSNGQLG  187 (275)
Q Consensus       169 ~~~~~~-~g----~~vi~iSak~g  187 (275)
                      .+.+++ .+    ...+++|+..+
T Consensus       148 ~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        148 VEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHHhCCCeeeEEecCccCCc
Confidence            333332 12    23456666554

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=97.52  E-value=0.00011  Score=66.45  Aligned_cols=54  Identities=22%  Similarity=0.381  Sum_probs=42.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCcccccceEEE---EEEeecccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKYVS---QFFLLKYHQ  268 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~~~~v~---~~~~~~~~~  268 (275)
                      ++..++++.|.+|||||||||.++..+..  ..++.+|-|+-++.+.   .++..+-+|
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG  192 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPG  192 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCC
Confidence            44678999999999999999999876543  3445899999998877   356666555

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.50  E-value=0.00043  Score=59.89  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             cchhHHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCc---HHHHHHh-------cCCCeEEEEEcccCcCH
Q 023932          103 YPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISM  162 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~a-DlVI~VvDar~p~s~~d---~~l~~~L-------~~kp~IlVlNK~Dl~~~  162 (275)
                      +|||. ++...+.++++.+ +.||+|+|+........   ..+..++       .+.|+++|.||+|+...
T Consensus        55 ~pG~~-~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          55 VPGHP-KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CCCCH-HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            78985 5566677788888 99999999987532111   1122221       26899999999998653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01865 Rab3 Rab3 subfamily

Probab=97.50  E-value=0.00013  Score=60.21  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=22.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||+|+|.+.+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~   25 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDS   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.49  E-value=0.00014  Score=60.07  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..|++++|.+|||||||+|++.+..
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~   27 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDS   27 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCc
Confidence            4689999999999999999999754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.49  E-value=9.5e-05  Score=57.48  Aligned_cols=25  Identities=36%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ||+++|.+||||||||++|.+....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCc
Confidence            6899999999999999999987644

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=97.47  E-value=7.5e-05  Score=61.98  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|+++|.+|||||||+|+|.+..
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~   25 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY   25 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            69999999999999999999765

>cd04149 Arf6 Arf6 subfamily

Probab=97.47  E-value=0.00019  Score=59.87  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..+++++|.+|||||||||+|......
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~   35 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV   35 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc
Confidence            468999999999999999999865443

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04113 Rab4 Rab4 subfamily

Probab=97.46  E-value=0.00015  Score=59.28  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|++++|.+|||||||+|+|++..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~   24 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENK   24 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            379999999999999999999754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04123 Rab21 Rab21 subfamily

Probab=97.46  E-value=0.00015  Score=58.69  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||+|+|....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~   24 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENK   24 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            378999999999999999999765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=97.46  E-value=0.00045  Score=58.83  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=68.0

Q ss_pred             ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc--------CCCeEEEE
Q 023932           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG--------NRKRILVL  154 (275)
Q Consensus        85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~--------~kp~IlVl  154 (275)
                      +..+.+.+|++..         ++++...--..++.+|..+++.|..++-+....  .=.+++.        .-|++|+.
T Consensus        55 ~~~vtlQiWDTAG---------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG  125 (210)
T KOG0394|consen   55 DRSVTLQIWDTAG---------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG  125 (210)
T ss_pred             CeEEEEEEEeccc---------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence            3344577888654         333333323446899999999998776444322  1223332        24899999


Q ss_pred             EcccCcCHH----HHHHHHHHHHHcC-CeeEEecCccccchhhHHHHHHH
Q 023932          155 NREDMISMA----DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       155 NK~Dl~~~~----~~~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ||+|+....    ...+...+....| +.++.+|||...++++..+.+..
T Consensus       126 NKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~  175 (210)
T KOG0394|consen  126 NKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIAR  175 (210)
T ss_pred             ccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHH
Confidence            999996521    1233445565555 78999999999999887665544

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.00037  Score=56.97  Aligned_cols=87  Identities=10%  Similarity=0.014  Sum_probs=57.9

Q ss_pred             HHHHhhcCeEEEEEeCCCC--CCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEEe
Q 023932          115 KDQLKLMDVVIEVRDARIP--LSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFS  182 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~i  182 (275)
                      +.++.....+|||+|+.+.  ......++.+.+.     +.++++..||-|+.......+..+++.-     ..--+.+.
T Consensus        79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~  158 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPS  158 (180)
T ss_pred             HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecc
Confidence            3467888999999998643  2222234444443     5689999999999876555555555421     12357789


Q ss_pred             cCccccchhhHHHHHHHHh
Q 023932          183 NGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~  201 (275)
                      ++.+|.|+.+=..++...+
T Consensus       159 ~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  159 CALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             ccccchhHHHHHHHHHhhc
Confidence            9999999877666665544

>cd04136 Rap_like Rap-like subfamily

Probab=97.44  E-value=0.00017  Score=58.79  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||+|++....
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~   25 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGI   25 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999999654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.43  E-value=0.00053  Score=69.96  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      +=+.|||.. +...+...++.+|++++|+|+..+....+..+..++.  ++|+++++||+|+...
T Consensus        79 liDTPG~~~-~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        79 IIDTPGHVD-FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             EEECCCCcc-hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            335688853 4446778899999999999999877666555655554  7899999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.42  E-value=0.0001  Score=70.33  Aligned_cols=46  Identities=24%  Similarity=0.427  Sum_probs=40.1

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcC----Ccc-----------ccCCCCc---ccccceEEE
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKYVS  259 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~----~~~-----------~vs~~pG---tTr~~~~v~  259 (275)
                      ++..+-++++|.-|+|||||||++.+.    +..           .+++.+|   ||.+..++.
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP   77 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVP   77 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCcccc
Confidence            345678999999999999999999987    666           7999999   999998855

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04114 Rab30 Rab30 subfamily

Probab=97.42  E-value=0.00028  Score=58.06  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++++|.+||||||||++|....
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~   31 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL   31 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC
Confidence            3689999999999999999998643

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04175 Rap1 Rap1 subgroup

Probab=97.41  E-value=0.00019  Score=58.86  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=27.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .|++++|.+|||||||+|+++...  -....+.|+.+.
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~   37 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDS   37 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchhe
Confidence            479999999999999999998643  233445566543

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0016  Score=54.31  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=70.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---------CCCeEEEEEccc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NRKRILVLNRED  158 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---------~kp~IlVlNK~D  158 (275)
                      .-+..|++..         ++++...+-...+++--.++++|.....+..+  +..|+.         +-.+++..||+|
T Consensus        67 ihLQlWDTAG---------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGNK~D  135 (219)
T KOG0081|consen   67 IHLQLWDTAG---------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGNKAD  135 (219)
T ss_pred             EEEeeecccc---------HHHHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcCccc
Confidence            3577888654         46666666677899999999999876544332  333432         456889999999


Q ss_pred             CcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       159 l~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      |.+...+  ++..+...+.|++++.+||-+|.++++-.+.+..
T Consensus       136 L~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lld  178 (219)
T KOG0081|consen  136 LEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLD  178 (219)
T ss_pred             hhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence            9876433  2333445567899999999999998875554443

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=97.39  E-value=0.00033  Score=59.22  Aligned_cols=27  Identities=19%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      .++++++|.+|||||||||++......
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~   29 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFV   29 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcC
Confidence            578999999999999999999876533

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01862 Rab7 Rab7 subfamily

Probab=97.39  E-value=0.00012  Score=60.33  Aligned_cols=24  Identities=33%  Similarity=0.656  Sum_probs=21.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||+|+|++..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~   24 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKK   24 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999998764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>CHL00071 tufA elongation factor Tu

Probab=97.39  E-value=0.00015  Score=69.50  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCcc---------------ccCCCCcccccceEEE------EEEeecccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKYVS------QFFLLKYHQ  268 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~---------------~vs~~pGtTr~~~~v~------~~~~~~~~~  268 (275)
                      ...++++++|.+|+|||||+|+|++....               ...-.+|+|++.....      .+.+.++||
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG   84 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG   84 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence            34689999999999999999999964211               1112379999875433      234555555

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.38  E-value=0.0013  Score=59.26  Aligned_cols=60  Identities=18%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      +.||+. .+...+...+..+|.+++|+|+..+.......+.+++.  ++|+++++||+|+...
T Consensus        70 DtPG~~-~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          70 DTPGYA-DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA  131 (268)
T ss_pred             ECcCHH-HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence            368874 45567778899999999999998775554444444443  7899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.38  E-value=0.00012  Score=74.04  Aligned_cols=41  Identities=27%  Similarity=0.196  Sum_probs=32.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcccc----------CCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA----------APRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v----------s~~pGtTr~~~  256 (275)
                      ..++|+|+|.+|+|||||+|+|+......+          +..+|+||+.-
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~   73 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEI   73 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcc
Confidence            357899999999999999999997766655          33678887643

>PRK09866 hypothetical protein; Provisional

Probab=97.36  E-value=0.00037  Score=69.80  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +.++++|.+|+|||||+|+|++...+.+++.+-||. +.+++
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~  110 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIR  110 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEE
Confidence            789999999999999999999999888888887777 55554

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=97.36  E-value=0.00077  Score=56.41  Aligned_cols=82  Identities=10%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCH---HHHHHH---HHHHHHcCCeeEEe
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISM---ADRNAW---ATYFAKQGTKVIFS  182 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~---~~~~~~---~~~~~~~g~~vi~i  182 (275)
                      .+++.+|.+|+|||..++..-.+  ..+...|     .+.+++++.||.|+.+.   +++...   .+.++.....++-+
T Consensus        79 nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~c  158 (185)
T KOG0073|consen   79 NYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKC  158 (185)
T ss_pred             HhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEE
Confidence            48899999999999976532221  1233333     26899999999999743   333221   12223445678899


Q ss_pred             cCccccchhhHHHHH
Q 023932          183 NGQLGMGTMKLSRLA  197 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i  197 (275)
                      |+.+|+++.+=.+++
T Consensus       159 s~~tge~l~~gidWL  173 (185)
T KOG0073|consen  159 SAVTGEDLLEGIDWL  173 (185)
T ss_pred             eccccccHHHHHHHH
Confidence            999997765544443

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.35  E-value=0.00034  Score=59.61  Aligned_cols=21  Identities=33%  Similarity=0.580  Sum_probs=20.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +|+++|.+|||||||+|+|+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~   24 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLK   24 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            689999999999999999996

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04151 Arl1 Arl1 subfamily

Probab=97.34  E-value=0.0003  Score=57.51  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      |++++|.+|||||||+|+|......
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~   25 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV   25 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc
Confidence            5899999999999999999765543

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00157 Rho Rho (Ras homology) family

Probab=97.33  E-value=0.00014  Score=59.68  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|++++|.+|||||||+|+|++..
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999999765

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=97.32  E-value=0.0018  Score=54.31  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---------CC-CeEEEEEcc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NR-KRILVLNRE  157 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---------~k-p~IlVlNK~  157 (275)
                      ..+..||+..         ++++...++.+++++--++.|.|..+-.+..+  +..|+.         .+ -+++|..|+
T Consensus        58 iklqlwdtag---------qerfrsitksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKs  126 (213)
T KOG0091|consen   58 IKLQLWDTAG---------QERFRSITKSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKS  126 (213)
T ss_pred             EEEEEeeccc---------hHHHHHHHHHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEecccc
Confidence            4688998765         67888888999999999999999977544433  333332         23 367799999


Q ss_pred             cCcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932          158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       158 Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ||.+..++  ++....-+..|..++.+|+++|.++++-...+.
T Consensus       127 DL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla  169 (213)
T KOG0091|consen  127 DLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA  169 (213)
T ss_pred             chhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence            99865432  233233344678999999999999987655543

>TIGR00101 ureG urease accessory protein UreG

Probab=97.32  E-value=0.00062  Score=58.95  Aligned_cols=76  Identities=22%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             cCeEEEEEeCCCCCCCCcHHHHHHhcCCCe--EEEEEcccCcCH--HHHHHHHHHHHH--cCCeeEEecCccccchhhHH
Q 023932          121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKR--ILVLNREDMISM--ADRNAWATYFAK--QGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       121 aDlVI~VvDar~p~s~~d~~l~~~L~~kp~--IlVlNK~Dl~~~--~~~~~~~~~~~~--~g~~vi~iSak~g~Gi~~L~  194 (275)
                      +|.+|.|+|+.+......    ....+...  ++++||+|+.+.  .+++...+..+.  .+.+++++|+++|.|++++.
T Consensus       113 ~~~~i~vvD~~~~~~~~~----~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~  188 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR----KGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVI  188 (199)
T ss_pred             hCcEEEEEEcchhhhhhh----hhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence            578999999876443211    11112234  899999999852  233333333433  34689999999999999999


Q ss_pred             HHHHHH
Q 023932          195 RLAKAL  200 (275)
Q Consensus       195 ~~i~~l  200 (275)
                      +++.+.
T Consensus       189 ~~i~~~  194 (199)
T TIGR00101       189 DWIEHY  194 (199)
T ss_pred             HHHHhh
Confidence            988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04140 ARHI_like ARHI subfamily

Probab=97.31  E-value=0.00033  Score=57.73  Aligned_cols=24  Identities=42%  Similarity=0.542  Sum_probs=21.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||||++++..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~   25 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGT   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            579999999999999999999754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.31  E-value=0.00032  Score=57.17  Aligned_cols=24  Identities=46%  Similarity=0.677  Sum_probs=21.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++++++|.+|||||||+|++.+..
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~   24 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGI   24 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0015  Score=57.05  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             cccccchhHHHHHHHHHHHHh---hcCeEEEEEeCCCCCCCCcHHH----HHHhc-------CCCeEEEEEcccCcC
Q 023932           99 PVQWYPGHIAKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLM----DQWLG-------NRKRILVLNREDMIS  161 (275)
Q Consensus        99 ~i~~~pG~~~~~~k~l~~~l~---~aDlVI~VvDar~p~s~~d~~l----~~~L~-------~kp~IlVlNK~Dl~~  161 (275)
                      .+=+|||| .+...++.+++.   .+..|+||||+....-. ..+.    ...+.       ..|++|..||.|+..
T Consensus        85 ~LVD~PGH-~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~-vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen   85 TLVDLPGH-SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN-VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEEeCCCc-HHHHHHHHHHccccccceeEEEEEeccccchh-hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            45689999 778888888887   89999999998654322 2222    22222       358999999999863

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.30  E-value=0.00032  Score=60.88  Aligned_cols=99  Identities=13%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcc
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNRE  157 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~  157 (275)
                      ......+||+..         +++...-.-.+++.+-..++|.|.....+..  .+.+||.        +..+++|.||+
T Consensus        61 k~vkaqIWDTAG---------QERyrAitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~  129 (222)
T KOG0087|consen   61 KTVKAQIWDTAG---------QERYRAITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKS  129 (222)
T ss_pred             cEEEEeeecccc---------hhhhccccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecch
Confidence            334567898765         4555545556789999999999996554443  4455543        57899999999


Q ss_pred             cCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          158 DMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       158 Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ||....  ..++-..+-.+++..++.+||..+.++++..+
T Consensus       130 DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen  130 DLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             hhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            996521  11233334445678899999999999887643

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.29  E-value=0.00061  Score=60.70  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             CccEEEEeCCCccccccchhHHH--HHHHHHHHH---h--hcCeEEEEEeCCCCCCCCcHHHHHH-------hc-CCCeE
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAK--TEKELKDQL---K--LMDVVIEVRDARIPLSTTHPLMDQW-------LG-NRKRI  151 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~--~~k~l~~~l---~--~aDlVI~VvDar~p~s~~d~~l~~~-------L~-~kp~I  151 (275)
                      ..+|+..|        +||.++-  .+..+...+   .  ..-++++++|+....... ..+...       ++ +.|.+
T Consensus        90 ~~~y~l~D--------tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~-~f~s~~L~s~s~~~~~~lP~v  160 (238)
T PF03029_consen   90 EDDYLLFD--------TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS-KFVSSLLLSLSIMLRLELPHV  160 (238)
T ss_dssp             H-SEEEEE----------SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHH-HHHHHHHHHHHHHHHHTSEEE
T ss_pred             CCcEEEEe--------CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChh-hHHHHHHHHHHHHhhCCCCEE
Confidence            34899998        6777652  223333333   2  233799999987543211 112221       11 78999


Q ss_pred             EEEEcccCcCHH--HHHHHHH------------------HHHH----cC-C-eeEEecCccccchhhHHHHHHHHh
Q 023932          152 LVLNREDMISMA--DRNAWAT------------------YFAK----QG-T-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       152 lVlNK~Dl~~~~--~~~~~~~------------------~~~~----~g-~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .|+||+|+++..  ...+|..                  .+.+    .+ . .++++|++++.|+++|...+.+..
T Consensus       161 nvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  161 NVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             EEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             EeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            999999999832  1111111                  1111    12 2 689999999999999998887653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd01864 Rab19 Rab19 subfamily

Probab=97.26  E-value=0.00039  Score=57.18  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..|++++|.+|||||||+|+|....
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~   27 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGT   27 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Confidence            3689999999999999999998643

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.25  E-value=0.0004  Score=57.75  Aligned_cols=35  Identities=31%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      +++++|.+|||||||+|+|.+.......+..|.++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~   35 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP   35 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE
Confidence            37899999999999999999764344555556543

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.24  E-value=0.0013  Score=65.23  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      +-+.||| ..+...+...+..+|.+|+|+|+..+.......+.+...  +.|+++++||+|+...
T Consensus        83 liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         83 LLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             EEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence            3356898 456667778899999999999998775444344444433  7899999999998653

>cd04116 Rab9 Rab9 subfamily

Probab=97.24  E-value=0.00041  Score=57.25  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|++++|.+|||||||+|+++...
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~   29 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNK   29 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            5799999999999999999998654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=97.23  E-value=0.0004  Score=57.19  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++++++|.+|||||||+++++...
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~   24 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDG   24 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            478999999999999999998654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=97.22  E-value=0.00044  Score=57.37  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++++|.+|||||||||+++...
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~   26 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGR   26 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            589999999999999999998654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04177 RSR1 RSR1 subgroup

Probab=97.22  E-value=0.00065  Score=56.17  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++++|.||||||||+|++.+..
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~   25 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNV   25 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            479999999999999999999655

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.19  E-value=0.00026  Score=60.53  Aligned_cols=62  Identities=19%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             cccccchhHHHHHHHHHHH---HhhcCeEEEEEeCCCCCCCCcHHHHHH----hc-------CCCeEEEEEcccCcCH
Q 023932           99 PVQWYPGHIAKTEKELKDQ---LKLMDVVIEVRDARIPLSTTHPLMDQW----LG-------NRKRILVLNREDMISM  162 (275)
Q Consensus        99 ~i~~~pG~~~~~~k~l~~~---l~~aDlVI~VvDar~p~s~~d~~l~~~----L~-------~kp~IlVlNK~Dl~~~  162 (275)
                      .+-++||| .+...++.+.   +.++..||||+|+..... .-.+..++    |.       ..|++|+.||.|+...
T Consensus        52 ~lvD~PGH-~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~-~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   52 RLVDIPGH-PRLRSKLLDELKYLSNAKGIIFVVDSSTDQK-ELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             CEEEETT--HCCCHHHHHHHHHHGGEEEEEEEEETTTHHH-HHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEECCCc-HHHHHHHHHhhhchhhCCEEEEEEeCccchh-hHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            35579999 4455555554   889999999999864211 11222333    21       4689999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04110 Rab35 Rab35 subfamily

Probab=97.19  E-value=0.00051  Score=58.90  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+|+++|.+|||||||+|++.+..
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~   30 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNT   30 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999999999764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.19  E-value=0.0016  Score=56.45  Aligned_cols=54  Identities=15%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             CCCeEEEEEcccCcCH--HHHHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHHH
Q 023932          147 NRKRILVLNREDMISM--ADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       147 ~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .++.++++||+|+.+.  ....+..+.+++.+  .+++.+||++|.|++++.+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5688999999999753  22344444454433  679999999999999999887654

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.16  E-value=0.00037  Score=60.14  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEE------EEEeeccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ++++++|.+|+|||||+++|+..      .+....         ...|+|.+...+.      .+.+++++|.
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~   75 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH   75 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH
Confidence            67999999999999999999853      111111         2568888875443      2345555553

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.16  E-value=0.00036  Score=57.39  Aligned_cols=23  Identities=39%  Similarity=0.755  Sum_probs=20.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +++++|.+||||||||++++...
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~   23 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKR   23 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCc
Confidence            47999999999999999998643

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.15  E-value=0.0008  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.660  Sum_probs=20.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|++++|.+|||||||+|+|...
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~   23 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSN   23 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999854

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.15  E-value=0.002  Score=55.25  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH---------HHHHHHH--------HHHcC--
Q 023932          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------RNAWATY--------FAKQG--  176 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~---------~~~~~~~--------~~~~g--  176 (275)
                      +.++|++++|.|.  .++..+..+.+.+.  ++++++|+||+|+....+         .++.++.        +...+  
T Consensus        78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~  155 (197)
T cd04104          78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS  155 (197)
T ss_pred             ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence            5678999998654  35666666666665  689999999999953211         1222222        22222  


Q ss_pred             -CeeEEecCc--cccchhhHHHHHHHHhch
Q 023932          177 -TKVIFSNGQ--LGMGTMKLSRLAKALASD  203 (275)
Q Consensus       177 -~~vi~iSak--~g~Gi~~L~~~i~~l~~~  203 (275)
                       ..++.+|+.  .+.++..|.+.+...+++
T Consensus       156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence             368889998  578888888877655543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01892 Miro2 Miro2 subfamily

Probab=97.15  E-value=0.00086  Score=55.87  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=26.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ..+++++|.+|||||||||++++.. ..+.....|+
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~   38 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTI   38 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCcc
Confidence            4689999999999999999999765 3223334444

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00063  Score=65.69  Aligned_cols=93  Identities=20%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------C------CCeEEEEEcccCcCHH-HHHH-HHHH
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------N------RKRILVLNREDMISMA-DRNA-WATY  171 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~------kp~IlVlNK~Dl~~~~-~~~~-~~~~  171 (275)
                      +...++.++.++.+|+|++|+|+....++.+..+.+.+.        .      ++.+++.||+|+.++- +... -..+
T Consensus       336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~  415 (531)
T KOG1191|consen  336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVY  415 (531)
T ss_pred             HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceec
Confidence            456788899999999999999997766666666666543        2      6899999999998662 1111 1112


Q ss_pred             HHHcC---Ce-eEEecCccccchhhHHHHHHHH
Q 023932          172 FAKQG---TK-VIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       172 ~~~~g---~~-vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ....+   ++ +.++|+++++|++.|...+.+.
T Consensus       416 ~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~  448 (531)
T KOG1191|consen  416 PSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI  448 (531)
T ss_pred             cccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence            22112   23 4569999999999998776543

>cd01893 Miro1 Miro1 subfamily

Probab=97.14  E-value=0.00059  Score=56.37  Aligned_cols=25  Identities=44%  Similarity=0.602  Sum_probs=22.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      +|++++|.+|||||||+|+|.+...
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~   25 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEF   25 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcC
Confidence            3799999999999999999997653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.14  E-value=0.00074  Score=55.65  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|++++|.+|||||||+++|....
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~   24 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGE   24 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999997544

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.0025  Score=52.88  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      ..+.+||+..         ++++..-.+.+++.+.-.++|.|+....+.  ..+..||.        ++-++++.||.||
T Consensus        58 vKLQIWDTAG---------QErFRSVtRsYYRGAAGAlLVYD~Tsrdsf--naLtnWL~DaR~lAs~nIvviL~GnKkDL  126 (214)
T KOG0086|consen   58 VKLQIWDTAG---------QERFRSVTRSYYRGAAGALLVYDITSRDSF--NALTNWLTDARTLASPNIVVILCGNKKDL  126 (214)
T ss_pred             EEEEEeeccc---------HHHHHHHHHHHhccccceEEEEeccchhhH--HHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence            5788999765         678888888999999999999998654322  24556654        4567888999999


Q ss_pred             cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhH-HHHHHHHhc
Q 023932          160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKALAS  202 (275)
Q Consensus       160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L-~~~i~~l~~  202 (275)
                      ....++  .+...+..+..+.++.+|+++|+++++- .+....+..
T Consensus       127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~  172 (214)
T KOG0086|consen  127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN  172 (214)
T ss_pred             ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence            765443  2222333333456788999999998764 344344433

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=97.13  E-value=0.0015  Score=67.39  Aligned_cols=55  Identities=24%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ..++..|+|+|.+|+|||||+|+|.+.. +..+..+|+|.++..+.      .+.+++++|.
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh  347 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGH  347 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCC
Confidence            3567789999999999999999998755 55667789998886543      2345566654

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=97.13  E-value=0.00079  Score=67.48  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      ...++.+++++|.+|+|||||+|+|.+.. ......+|+|.+....
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~  127 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAY  127 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEE
Confidence            34567799999999999999999999765 5566778999887643

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=97.12  E-value=0.00019  Score=64.86  Aligned_cols=83  Identities=19%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH------HHHHHHHHHHc-------CCeeEEec
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------RNAWATYFAKQ-------GTKVIFSN  183 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~------~~~~~~~~~~~-------g~~vi~iS  183 (275)
                      ++.--+++++|+..++...|...+.|+.  +.|..+|+||||+.....      .......|...       ....+.+|
T Consensus       218 ~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~S  297 (320)
T KOG2486|consen  218 ENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVS  297 (320)
T ss_pred             hhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeee
Confidence            4556688899999999999988899987  789999999999764322      01111112211       13566799


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      +.++.|++.|+-.+..+.
T Consensus       298 svt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  298 SVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             cccccCceeeeeehhhhh
Confidence            999999998876655543

>TIGR00503 prfC peptide chain release factor 3

Probab=97.12  E-value=0.0015  Score=64.67  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=46.3

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +-+.||| ..+...+...+..+|.+|+|+|+..+.......+.+.+.  ++|+++++||+|+..
T Consensus        84 liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        84 LLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence            3457998 566777888899999999999998765444344444443  789999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.002  Score=52.70  Aligned_cols=102  Identities=16%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl  159 (275)
                      -.+.+|++..         ++++..-.+.+.+.+.-.+.|.|.....+.  ..+..||.        +.-++++.||.||
T Consensus        60 iklqiwdtag---------qerfravtrsyyrgaagalmvyditrrsty--nhlsswl~dar~ltnpnt~i~lignkadl  128 (215)
T KOG0097|consen   60 IKLQIWDTAG---------QERFRAVTRSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADL  128 (215)
T ss_pred             EEEEEeeccc---------HHHHHHHHHHHhccccceeEEEEehhhhhh--hhHHHHHhhhhccCCCceEEEEecchhhh
Confidence            3578888654         567777778889999999999998543222  23555654        3457889999999


Q ss_pred             cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhH-HHHHHHH
Q 023932          160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKAL  200 (275)
Q Consensus       160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L-~~~i~~l  200 (275)
                      ....+  .++..++..+.|+.++..|+++|.++++- ++..+++
T Consensus       129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akki  172 (215)
T KOG0097|consen  129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKI  172 (215)
T ss_pred             hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHH
Confidence            76532  24444555567888999999999998753 4443433

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.11  E-value=0.00089  Score=55.57  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      |++++|.+|||||||||+++...
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~   24 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGE   24 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            78999999999999999998543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01850 CDC_Septin CDC/Septin

Probab=97.10  E-value=0.00085  Score=61.03  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=25.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA  246 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs  246 (275)
                      ..+++++|.+|+|||||||+|++......+
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~   33 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSD   33 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCcccc
Confidence            468999999999999999999987755443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.09  E-value=0.0009  Score=56.62  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=22.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..|++++|.+|||||||++++......
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~   43 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV   43 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc
Confidence            478999999999999999999754433

>PRK12735 elongation factor Tu; Reviewed

Probab=97.07  E-value=0.00085  Score=64.05  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...++++++|.+|+|||||+|+|++
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~   34 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITK   34 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHH
Confidence            3468899999999999999999985

>cd04127 Rab27A Rab27a subfamily

Probab=97.07  E-value=0.00095  Score=55.57  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|++++|.+|||||||+|++....
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~   28 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNK   28 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            4789999999999999999998643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.0012  Score=64.76  Aligned_cols=97  Identities=23%  Similarity=0.287  Sum_probs=64.5

Q ss_pred             CCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------C---cHHHHHHhcCCCeEEEEEcccCcCHHH
Q 023932           95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------T---HPLMDQWLGNRKRILVLNREDMISMAD  164 (275)
Q Consensus        95 ~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~---d~~l~~~L~~kp~IlVlNK~Dl~~~~~  164 (275)
                      ++...+=++||| ..+...+-.-+..+|+.++|||+.....+       .   ...+.+.|.-..+|+++||+|+++-.+
T Consensus       254 ~~~~tliDaPGh-kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  254 SKIVTLIDAPGH-KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             ceeEEEecCCCc-cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence            334456789996 77788877778999999999999643111       1   112334444567999999999996432


Q ss_pred             -----HH-HHHHHHHH-cC-----CeeEEecCccccchhh
Q 023932          165 -----RN-AWATYFAK-QG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       165 -----~~-~~~~~~~~-~g-----~~vi~iSak~g~Gi~~  192 (275)
                           +. +...++.+ .|     +.++++|+.+|+|+-.
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence                 22 22223322 23     4799999999999753

>cd04158 ARD1 ARD1 subfamily

Probab=97.04  E-value=0.0009  Score=55.56  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.8

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      |++++|.+|||||||+|+|.+..
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~   23 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDE   23 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999763

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.04  E-value=0.00081  Score=68.86  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=36.8

Q ss_pred             CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +..++..|+|+|.+|+|||||+|+|++.. ...+..+|+|.++..+.
T Consensus       240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~  285 (742)
T CHL00189        240 SINRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYE  285 (742)
T ss_pred             hcccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEE
Confidence            34567789999999999999999999765 45567789998876543

>cd04135 Tc10 TC10 subfamily

Probab=97.01  E-value=0.00049  Score=56.91  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +|++++|.+|||||||+|++.+..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~   24 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDA   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCC
Confidence            379999999999999999998654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.00  E-value=0.0037  Score=64.35  Aligned_cols=59  Identities=20%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCc
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMI  160 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~  160 (275)
                      =+.|||.. +...+...+..+|.+|+|+|+..+.......+.+.. . +.|.|+++||+|+.
T Consensus        92 iDtPG~~d-f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~  152 (731)
T PRK07560         92 IDTPGHVD-FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL  152 (731)
T ss_pred             EcCCCccC-hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence            45699954 667788889999999999999988766665555542 2 67889999999975

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.00  E-value=0.0017  Score=54.43  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..|++++|.+|||||||++++....
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~   37 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGE   37 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCC
Confidence            4789999999999999999997543

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN03110 Rab GTPase; Provisional

Probab=96.99  E-value=0.00096  Score=58.13  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+|++++|.+||||||||++|.+..
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~   36 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNE   36 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence            35799999999999999999999765

>smart00053 DYNc Dynamin, GTPase

Probab=96.97  E-value=0.013  Score=52.39  Aligned_cols=63  Identities=11%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHh-hcCeEEEEEeCCCCCCCCc-HHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH
Q 023932          109 KTEKELKDQLK-LMDVVIEVRDARIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA  173 (275)
Q Consensus       109 ~~~k~l~~~l~-~aDlVI~VvDar~p~s~~d-~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~  173 (275)
                      ...+++..+++ ..++|++|+|++..+...+ ..+.+++.  +++.++|+||+|+.++..  +|.+.+.
T Consensus       150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~--~~~~~~~  216 (240)
T smart00053      150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGT--DARDILE  216 (240)
T ss_pred             HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccH--HHHHHHh
Confidence            34456777888 4569999999998777766 46777765  789999999999986543  2555554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=96.97  E-value=0.0035  Score=54.39  Aligned_cols=92  Identities=14%  Similarity=0.089  Sum_probs=53.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh--------------------
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--------------------  145 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L--------------------  145 (275)
                      ..+.+||+.        |. ..........++++|++|+|+|..+..+..+.  .+.+.+                    
T Consensus        54 ~~l~IwDta--------G~-e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~  124 (202)
T cd04102          54 FFVELWDVG--------GS-ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQ  124 (202)
T ss_pred             EEEEEEecC--------Cc-hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence            356788744        32 33333344578999999999999876443221  111211                    


Q ss_pred             ---cCCCeEEEEEcccCcCHHHHH-----HHHHHHH-HcCCeeEEecCcccc
Q 023932          146 ---GNRKRILVLNREDMISMADRN-----AWATYFA-KQGTKVIFSNGQLGM  188 (275)
Q Consensus       146 ---~~kp~IlVlNK~Dl~~~~~~~-----~~~~~~~-~~g~~vi~iSak~g~  188 (275)
                         .+.|++||.||+|+.......     .-...+. +.+.+.+.+++.+..
T Consensus       125 ~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         125 FGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             cCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence               146899999999997542111     1112232 346677777776543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00416 elongation factor 2; Provisional

Probab=96.96  E-value=0.0043  Score=64.75  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=49.6

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      +-+.|||. ++..++...++.+|.+|+|+|+..+.......+.+.+.  ++|+++++||+|+.
T Consensus        96 liDtPG~~-~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHV-DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHH-hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence            44679994 47777888899999999999999988777766666554  67999999999987

>cd04122 Rab14 Rab14 subfamily

Probab=96.94  E-value=0.0012  Score=54.44  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||||++.+..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~   26 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKK   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            589999999999999999999764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.94  E-value=0.0016  Score=59.59  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             CCeEEEEEcccCcCH--HHHHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHH
Q 023932          148 RKRILVLNREDMISM--ADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       148 kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..-++|+||+|+++.  .+++...+.+++..  ..++.+|+++|.|+++|.++|.+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999873  35566666666543  67999999999999999998865

>cd04117 Rab15 Rab15 subfamily

Probab=96.93  E-value=0.0012  Score=54.38  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +++++|.+|||||||+++++...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~   24 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNE   24 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999999765

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.90  E-value=0.0021  Score=49.98  Aligned_cols=47  Identities=28%  Similarity=0.379  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-cCCCeEEEEEc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNR  156 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-~~kp~IlVlNK  156 (275)
                      ..+++.+.+..+|++++|+|+..+....+..+.+++ .++|+++|+||
T Consensus        69 ~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK  116 (116)
T PF01926_consen   69 EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK  116 (116)
T ss_dssp             HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence            455677777999999999998875444455666666 47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04111 Rab39 Rab39 subfamily

Probab=96.90  E-value=0.00085  Score=58.28  Aligned_cols=27  Identities=37%  Similarity=0.582  Sum_probs=23.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCP  244 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~  244 (275)
                      .||+++|.+|||||||||+|++.+...
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~   29 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAE   29 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            589999999999999999999765433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=96.89  E-value=0.0015  Score=65.58  Aligned_cols=38  Identities=16%  Similarity=0.347  Sum_probs=28.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      +..|+|+|.+|+|||||||+|++.. .......|+|+++
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~-v~~~e~ggiTq~i   41 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSA-VAKREAGGITQHI   41 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccc-cccccCCceeccc
Confidence            3469999999999999999999874 3333334577753

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04176 Rap2 Rap2 subgroup

Probab=96.89  E-value=0.00079  Score=55.05  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++++|.||||||||+++++...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~   25 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGT   25 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            479999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN00223 ADP-ribosylation factor; Provisional

Probab=96.89  E-value=0.0017  Score=54.91  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=23.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCP  244 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~  244 (275)
                      ..+++++|.+|||||||+++|.......
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~   44 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVT   44 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCcc
Confidence            4689999999999999999998654333

>PLN03108 Rab family protein; Provisional

Probab=96.88  E-value=0.0013  Score=56.90  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..|++|+|.+|||||||+|+|++..
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~   30 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKR   30 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            4689999999999999999999754

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.86  E-value=0.0027  Score=58.29  Aligned_cols=104  Identities=13%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhcCCCeEEEEEcccCcC
Q 023932           83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLGNRKRILVLNREDMIS  161 (275)
Q Consensus        83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L~~kp~IlVlNK~Dl~~  161 (275)
                      +.....|+++-++..        ...    .....++.+|.++++.+.   .+..+.. +..-+.+++.++|+||+|+..
T Consensus       122 l~~~g~D~viidT~G--------~~~----~e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~~~~~ivv~NK~Dl~~  186 (300)
T TIGR00750       122 LDAAGYDVIIVETVG--------VGQ----SEVDIANMADTFVVVTIP---GTGDDLQGIKAGLMEIADIYVVNKADGEG  186 (300)
T ss_pred             HHhCCCCEEEEeCCC--------Cch----hhhHHHHhhceEEEEecC---CccHHHHHHHHHHhhhccEEEEEcccccc
Confidence            334567888877543        111    111356778888888532   2222211 222234789999999999986


Q ss_pred             HHHHHHHH-------HHHHHc--C--CeeEEecCccccchhhHHHHHHHHh
Q 023932          162 MADRNAWA-------TYFAKQ--G--TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~~~~~~~~-------~~~~~~--g--~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ........       ..+.+.  +  ..++++||+++.|+++|.+.+.+..
T Consensus       187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            54321111       111111  1  3589999999999999988887653

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.85  E-value=0.0011  Score=57.54  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .+.-++|+|.+|+|||||++.|........-.++.|||..
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~   51 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPK   51 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCC
Confidence            3566889999999999999999865433446677888763

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=96.84  E-value=0.0016  Score=54.39  Aligned_cols=23  Identities=43%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      |++++|.+|||||||+|+++...
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~   24 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDV   24 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03127 Elongation factor Tu; Provisional

Probab=96.82  E-value=0.002  Score=62.60  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=36.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc------CCcccc---------CCCCcccccceEEE------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPA---------APRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~------~~~~~v---------s~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ..++|+++|.+|+|||||+|+|.+      +.+..+         .-.+|+|++...+.      .+.+.++||.
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh  134 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH  134 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence            467899999999999999999973      221111         12379999986444      2345566553

>cd01882 BMS1 Bms1

Probab=96.82  E-value=0.0015  Score=57.45  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=28.4

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC-CccccCCCCcc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGV  251 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~-~~~~vs~~pGt  251 (275)
                      ..+..++++|.||+|||||+|+|++. ....++...|+
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~   74 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP   74 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc
Confidence            44677999999999999999999975 33445555563

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.82  E-value=0.0013  Score=56.26  Aligned_cols=40  Identities=23%  Similarity=0.095  Sum_probs=31.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +.-+.|+|.+|+||+||++.|+.+..-....++.|||...
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r   43 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR   43 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCC
Confidence            3458899999999999999999875334556789999765

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=96.82  E-value=0.0021  Score=53.77  Aligned_cols=102  Identities=14%  Similarity=0.045  Sum_probs=67.6

Q ss_pred             ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC--CCCCcHHHHHH---hc--CCCeEEEEEcc
Q 023932           85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP--LSTTHPLMDQW---LG--NRKRILVLNRE  157 (275)
Q Consensus        85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~---L~--~kp~IlVlNK~  157 (275)
                      ..+..+-+|++..         ++++...+..+++.+.-||+|.|....  +...+..+.++   -.  +.-.++|.||+
T Consensus        57 g~~~KlaiWDTAG---------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKi  127 (209)
T KOG0080|consen   57 GKRLKLAIWDTAG---------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKI  127 (209)
T ss_pred             CceEEEEEEeccc---------hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccc
Confidence            3445678898765         466666677889999999999997533  22222222221   11  34567899999


Q ss_pred             cCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          158 DMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       158 Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      |..+..  .+++-+++.++++.-++..||++..|+....+
T Consensus       128 Dkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen  128 DKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             cchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            976432  34555566666666688999999999875433

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=96.79  E-value=0.00094  Score=52.04  Aligned_cols=21  Identities=52%  Similarity=0.813  Sum_probs=18.7

Q ss_pred             EEeeCCCChhHHHHHHhcCCc
Q 023932          222 IVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       222 IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ++|.+|+|||||+|+|.+...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~   21 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEF   21 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCc
Confidence            589999999999999997664

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.78  E-value=0.0075  Score=54.75  Aligned_cols=80  Identities=18%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CeEEEEEeCCCC---CCCCcHHHHH--Hh--cCCCeEEEEEcccCcCHHHHHHHHHHHHHc-------------------
Q 023932          122 DVVIEVRDARIP---LSTTHPLMDQ--WL--GNRKRILVLNREDMISMADRNAWATYFAKQ-------------------  175 (275)
Q Consensus       122 DlVI~VvDar~p---~s~~d~~l~~--~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-------------------  175 (275)
                      -+|+||+|....   .+.....+..  +|  ...|+|+|+||+|+.+..-..+|+..|...                   
T Consensus       149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm  228 (366)
T KOG1532|consen  149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM  228 (366)
T ss_pred             eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence            478899997422   1111111111  11  167999999999998766555665443310                   


Q ss_pred             ---------CCeeEEecCccccchhhHHHHHHHHh
Q 023932          176 ---------GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       176 ---------g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                               ++..+-+|+.+|.|.+++...+.+..
T Consensus       229 SL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  229 SLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             HHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence                     14678899999999999877765443

>PTZ00369 Ras-like protein; Provisional

Probab=96.78  E-value=0.0011  Score=56.32  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++++|.+|||||||++++.+..
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~   29 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNH   29 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC
Confidence            4689999999999999999999754

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.017  Score=52.93  Aligned_cols=63  Identities=22%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHhcCCC-eEEEEEcccCcCHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLGNRK-RILVLNREDMISMADR  165 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L~~kp-~IlVlNK~Dl~~~~~~  165 (275)
                      +-||| +...+.+.--..++|..|+|+.+.+++...-.+  +..-.-+.| +++++||+|+++..++
T Consensus        81 DcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~el  146 (394)
T COG0050          81 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEEL  146 (394)
T ss_pred             cCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHH
Confidence            45999 778888888889999999999998875544322  222122565 4557999999985544

>cd01850 CDC_Septin CDC/Septin

Probab=96.77  E-value=0.0083  Score=54.54  Aligned_cols=65  Identities=9%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             hcCeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHH----HHHHHHcCCeeEEecC
Q 023932          120 LMDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNG  184 (275)
Q Consensus       120 ~aDlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~----~~~~~~~g~~vi~iSa  184 (275)
                      ++|++++++|.. ..+...|..+.+.+. +.|+++|+||+|++...++...    .+.+...++.++....
T Consensus       114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         114 RVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             ceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence            588999999875 456666667666665 6799999999999876554433    3344455677776554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=96.70  E-value=0.0024  Score=55.82  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~  254 (275)
                      ..+|++++|.+|||||||+++++... .....+..|++..
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~   51 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH   51 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE
Confidence            45799999999999999999987543 2234455555443

>cd01870 RhoA_like RhoA-like subfamily

Probab=96.69  E-value=0.0012  Score=54.51  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      |++|+|.+|||||||++++.+..
T Consensus         3 ki~iiG~~~~GKTsl~~~~~~~~   25 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKDQ   25 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.68  E-value=0.002  Score=53.02  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=21.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      |+++||.+++|||||+++|.+.+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCC
Confidence            79999999999999999999865

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.68  E-value=0.0078  Score=62.90  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=49.3

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      +=+.||| ..+..++...++.+|.+|+|+|+..+.......+.+.+.  ++|+++++||+|+.
T Consensus       102 liDtPGh-~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        102 LIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC  163 (843)
T ss_pred             EECCCCH-HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence            3467999 667777888899999999999999987776666655543  78999999999987

>PRK00049 elongation factor Tu; Reviewed

Probab=96.67  E-value=0.0033  Score=60.05  Aligned_cols=53  Identities=21%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEEE------EEeecccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVSQ------FFLLKYHQ  268 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~~------~~~~~~~~  268 (275)
                      ..++++++|.+|+|||||+++|+..      ......         -..|+|++...+..      +.++++||
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG   84 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence            4578999999999999999999862      111111         15799998865442      34555555

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.63  E-value=0.0011  Score=56.71  Aligned_cols=40  Identities=25%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      +.=+.+.|.+|||||||+++|+....... .++.|||..+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~-SVS~TTR~pR~   43 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDDKLRF-SVSATTRKPRP   43 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhcCeEE-EEEeccCCCCC
Confidence            34578999999999999999998773332 35678887653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.62  E-value=0.0017  Score=52.70  Aligned_cols=36  Identities=31%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             EEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932          220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~  255 (275)
                      ++|+|.+|+|||||++.|.+.... ....++.|||..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p   38 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKP   38 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCccceecccccccCC
Confidence            589999999999999999976321 234566677765

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.61  E-value=0.0029  Score=54.71  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..+|++++|.+|||||||+|+++.
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~   31 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLT   31 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHh
Confidence            357999999999999999986653

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=96.60  E-value=0.0024  Score=57.25  Aligned_cols=37  Identities=30%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      ..||+++|+|.||||||+..|...+ ..++..-+||..
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLt   98 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLT   98 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEE
Confidence            4689999999999999999999765 555555666643

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=96.59  E-value=0.003  Score=54.28  Aligned_cols=25  Identities=32%  Similarity=0.589  Sum_probs=22.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      .+++++|.+|||||||+|+|.+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~   30 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEF   30 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcC
Confidence            6899999999999999999997653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.59  E-value=0.004  Score=59.38  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~  259 (275)
                      ..++++++|..|+|||||+++|++.      .+....         ...|+|+++..+.
T Consensus        11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~   69 (394)
T TIGR00485        11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE   69 (394)
T ss_pred             ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE
Confidence            4578999999999999999999832      212111         2369999886544

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.54  E-value=0.0015  Score=54.92  Aligned_cols=35  Identities=29%  Similarity=0.552  Sum_probs=27.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      +..+++++|..|+|||||+|.|.......+.|.-|
T Consensus        13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g   47 (175)
T PF00025_consen   13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG   47 (175)
T ss_dssp             SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS
T ss_pred             cEEEEEEECCCccchHHHHHHhhhccccccCcccc
Confidence            46799999999999999999999765444444333

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=96.54  E-value=0.0019  Score=53.94  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .|++++|.+|||||||++++....
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~   26 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHS   26 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCC
Confidence            589999999999999999998654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>TIGR00484 EF-G translation elongation factor EF-G

Probab=96.53  E-value=0.0025  Score=65.10  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+|+|+|.+|+|||||+|+|+..
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~   33 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFY   33 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999853

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.46  E-value=0.0038  Score=52.31  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=35.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +.+|+.|+|..|+||+|++++|+++..-.++|.-|.--....++
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~   58 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYK   58 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEec
Confidence            36899999999999999999999998778888776655444444

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=96.45  E-value=0.0058  Score=50.57  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             EEEEeeCCCChhHHHHHHhcCC
Q 023932          220 AGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++++|.+|||||||+|++.+..
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~   23 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSER   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.45  E-value=0.024  Score=53.68  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=63.7

Q ss_pred             cchhHHHHHHHHHHHH-hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHH----H--
Q 023932          103 YPGHIAKTEKELKDQL-KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF----A--  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l-~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~----~--  173 (275)
                      .-||---..-.++-.+ .+.|..++++.|.++++..-.+-..++  .+.|+|+|+||+|+.+.+..+...+.+    +  
T Consensus       208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v  287 (527)
T COG5258         208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRV  287 (527)
T ss_pred             cCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHh
Confidence            3455222333333333 678999999999888766543322222  278999999999999875443322221    1  


Q ss_pred             --------------------HcC---CeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 --------------------KQG---TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 --------------------~~g---~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                                          +.+   .+++.+|+.+|.|++-|.+++..+..
T Consensus       288 ~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~  339 (527)
T COG5258         288 GRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPK  339 (527)
T ss_pred             cccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCc
Confidence                                011   26788999999999888777665543

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=96.45  E-value=0.0034  Score=51.13  Aligned_cols=23  Identities=48%  Similarity=0.726  Sum_probs=21.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ||+++|.++||||||++++.+..
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~   23 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGE   23 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             CEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999999754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=96.41  E-value=0.0029  Score=57.80  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=22.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v  245 (275)
                      ..+++++|.+|+|||||||.|.+......
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~   32 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISE   32 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccc
Confidence            36899999999999999999998764443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.41  E-value=0.011  Score=50.54  Aligned_cols=85  Identities=11%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcccCcCHHHHHHH--------HHHHHHcCCeeEEe
Q 023932          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNREDMISMADRNAW--------ATYFAKQGTKVIFS  182 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~Dl~~~~~~~~~--------~~~~~~~g~~vi~i  182 (275)
                      ...+|+||+|+|++. ++..+..+.+++.       -++.++|+|+.|.+.....+++        ...+.+.+..++.+
T Consensus        81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f  159 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAF  159 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEE
Confidence            456899999999987 6666666655553       2688999999998754322222        22222323334333


Q ss_pred             c-----CccccchhhHHHHHHHHhch
Q 023932          183 N-----GQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       183 S-----ak~g~Gi~~L~~~i~~l~~~  203 (275)
                      +     +..+.++.+|++.+.++..+
T Consensus       160 ~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         160 NNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             eCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            3     45677888888888888765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12739 elongation factor G; Reviewed

Probab=96.40  E-value=0.0041  Score=63.57  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=36.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-----ccccCC------------CCcccccceEEE------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAP------------RPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-----~~~vs~------------~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +..+|+|+|.+|+|||||+|+|+...     ...+..            ..|+|.+.....      .+.+++++|.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~   83 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH   83 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence            34579999999999999999998531     112232            568888875443      2344555553

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=96.40  E-value=0.003  Score=61.83  Aligned_cols=28  Identities=36%  Similarity=0.369  Sum_probs=24.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..++|+|+|.+|+|||||+++|+.....
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~   53 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQ   53 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCC
Confidence            4689999999999999999999865443

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.013  Score=53.84  Aligned_cols=100  Identities=14%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHH----HHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p----~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~----~~~~~~~  173 (275)
                      +-|||- -....+..-.+-.|..++++.+..+    .++.+..-.+...-+.++++-||+||+.+++..    +...++.
T Consensus       131 DCPGHD-iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~  209 (466)
T KOG0466|consen  131 DCPGHD-ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQ  209 (466)
T ss_pred             cCCchH-HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHh
Confidence            458882 2333333344667888888877542    333333334444567899999999998765322    2222332


Q ss_pred             H---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 K---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .   .+..++++||.-+.+++.+.++|.+..+
T Consensus       210 ~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  210 GTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             ccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            2   2458999999999999999998776543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.35  E-value=0.0029  Score=54.29  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+++|+|.+|+|||||+|.+.+-.
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhcc
Confidence            34579999999999999999999754

>PLN03126 Elongation factor Tu; Provisional

Probab=96.35  E-value=0.0037  Score=61.23  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=22.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..++++++|.+|+|||||+|+|+.
T Consensus        80 ~~~ni~iiGhvd~GKSTLi~~Ll~  103 (478)
T PLN03126         80 PHVNIGTIGHVDHGKTTLTAALTM  103 (478)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999995

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.32  E-value=0.0062  Score=54.82  Aligned_cols=35  Identities=43%  Similarity=0.569  Sum_probs=0.0

Q ss_pred             HHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHh
Q 023932          194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       194 ~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+++..+.+.          .....+++|-|.||+|||||+++|.
T Consensus        16 ~~ll~~l~~~----------~g~a~~iGiTG~PGaGKSTli~~l~   50 (266)
T PF03308_consen   16 RELLKRLYPH----------TGRAHVIGITGPPGAGKSTLIDALI   50 (266)
T ss_dssp             HHHHHHHGGG----------TT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred             HHHHHHHHhh----------cCCceEEEeeCCCCCcHHHHHHHHH

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.31  E-value=0.0056  Score=52.78  Aligned_cols=52  Identities=21%  Similarity=0.301  Sum_probs=39.3

Q ss_pred             CeEEEEEcccCcCHHH--HHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHHH
Q 023932          149 KRILVLNREDMISMAD--RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       149 p~IlVlNK~Dl~~~~~--~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      -=++|+||.||++.-.  ++.+.+..++..  .+++++|+++|+|++++.+++...
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            4589999999998753  345555554432  579999999999999998887643

>PRK00007 elongation factor G; Reviewed

Probab=96.30  E-value=0.0044  Score=63.36  Aligned_cols=54  Identities=17%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc-----cccC------------CCCcccccceEEE------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-----~~vs------------~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +..+|+|+|.+|+|||||+|+|+....     ..++            ...|+|++.....      .+.+.+++|.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~   85 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH   85 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence            345899999999999999999973211     1122            2568888875433      2455566654

>PRK12736 elongation factor Tu; Reviewed

Probab=96.29  E-value=0.0032  Score=60.04  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC------ccccC---------CCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCPAA---------PRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~------~~~vs---------~~pGtTr~~~~v~  259 (275)
                      ..++++++|.+|+|||||+++|++..      .....         -..|+|.++..+.
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~   69 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE   69 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE
Confidence            46789999999999999999998621      11111         1569998885443

>cd01874 Cdc42 Cdc42 subfamily

Probab=96.28  E-value=0.0033  Score=52.74  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|++++|.+|||||||++++...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~   24 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTN   24 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.25  E-value=0.0036  Score=48.77  Aligned_cols=22  Identities=41%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .|+|.|.|++||||+.+.|.++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999875

...

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.24  E-value=0.0037  Score=49.86  Aligned_cols=26  Identities=31%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      +..++|+|.+|+|||||+++|.+...
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            45789999999999999999997653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK04004 translation initiation factor IF-2; Validated

Probab=96.23  E-value=0.0039  Score=62.56  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++..|+|+|.+|+|||||+|+|.+..
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~   30 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTA   30 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            45679999999999999999998754

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.18  E-value=0.0051  Score=57.30  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v  245 (275)
                      .+|+|+|.|++|||||+|.|.+.-...+
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            4899999999999999999997633433

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.0042  Score=55.45  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      +.-++|+|.+|+|||||+|.|.+-...
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            456899999999999999999975433

>cd01871 Rac1_like Rac1-like subfamily

Probab=96.14  E-value=0.0043  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++++++|.+||||||||.+++..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~   24 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTN   24 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.14  E-value=0.048  Score=50.98  Aligned_cols=131  Identities=23%  Similarity=0.294  Sum_probs=76.9

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHhcCCCeEEEEEcccCcCHHHHHHH-----HHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISMADRNAW-----ATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~---~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~-----~~~~~  173 (275)
                      +-||| +...+.+---.++.|..|+||.+.+++...-.   .+.+.+.-..+++.+||.|+++..+.-+.     .+.+.
T Consensus       123 DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs  201 (449)
T KOG0460|consen  123 DCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS  201 (449)
T ss_pred             CCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence            45999 77777777777899999999999887655432   23333333466777999999954433222     22233


Q ss_pred             HcC-----CeeEEecC---ccc----cchhhHHHHHHHHhchhh--hh-------------------------hhcCCCC
Q 023932          174 KQG-----TKVIFSNG---QLG----MGTMKLSRLAKALASDVN--VK-------------------------RRSKGLL  214 (275)
Q Consensus       174 ~~g-----~~vi~iSa---k~g----~Gi~~L~~~i~~l~~~~~--~~-------------------------~~~~~~~  214 (275)
                      ..|     .+++.=||   ..|    .|.+.+.+++..+-...+  .+                         +-+++..
T Consensus       202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~l  281 (449)
T KOG0460|consen  202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVL  281 (449)
T ss_pred             HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeeccc
Confidence            334     35665554   333    333333333332221111  00                         1255666


Q ss_pred             CcceeEEEEeeCCCChhHH
Q 023932          215 PRAVRAGIVGYPNVGKSSL  233 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTL  233 (275)
                      ..+.++=|+|..-.=|||.
T Consensus       282 KkG~e~eivG~~~~lkttv  300 (449)
T KOG0460|consen  282 KKGDEVEIVGHNKTLKTTV  300 (449)
T ss_pred             ccCCEEEEeccCcceeeEe
Confidence            7778899999987767653

>cd04169 RF3 RF3 subfamily

Probab=96.10  E-value=0.0056  Score=55.40  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .|+|+|.+|+|||||+|+|+..
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5899999999999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=96.10  E-value=0.014  Score=59.97  Aligned_cols=59  Identities=20%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|||.. +...+...++.+|.+|+|+|+..+.......+.+.+.  +.|.++++||+|...
T Consensus        92 DTPG~~~-f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        92 DTPGHVD-FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI  152 (720)
T ss_pred             eCCCccc-cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence            3588843 5567778899999999999998877666555555442  678999999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.07  E-value=0.012  Score=40.82  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             hhcCeEEEEEeCCCCCCCC-cHH--HH----HHhcCCCeEEEEEccc
Q 023932          119 KLMDVVIEVRDARIPLSTT-HPL--MD----QWLGNRKRILVLNRED  158 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~-d~~--l~----~~L~~kp~IlVlNK~D  158 (275)
                      .-.++|+|++|.+..-... +.+  +.    ..+.++|+++|+||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            3368999999987543221 222  22    2233899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PLN02772 guanylate kinase

Probab=96.03  E-value=0.0063  Score=57.93  Aligned_cols=41  Identities=27%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcccc-CCCCcccccceEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKYV  258 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v-s~~pGtTr~~~~v  258 (275)
                      .-+.|+|.+||||+||+++|+....... ..++.|||..+.-
T Consensus       136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~g  177 (398)
T PLN02772        136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREM  177 (398)
T ss_pred             cEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCccc
Confidence            3578999999999999999997653333 3788999988753

>PRK09602 translation-associated GTPase; Reviewed

Probab=96.03  E-value=0.0098  Score=56.91  Aligned_cols=68  Identities=6%  Similarity=-0.020  Sum_probs=49.6

Q ss_pred             CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCccccchhh-HHHHHHHHhchhhhhhhcCCCCCcc
Q 023932          147 NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRA  217 (275)
Q Consensus       147 ~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi~~-L~~~i~~l~~~~~~~~~~~~~~~~~  217 (275)
                      .+|+|+|+||+|+....+ ..++.++   .+..++++||+.+.++++ |.+.+.++++..+.+++.+..++++
T Consensus       217 ~KPvI~VlNK~D~~~~~~~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~  286 (396)
T PRK09602        217 SKPMVIAANKADLPPAEENIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQ  286 (396)
T ss_pred             CCCEEEEEEchhcccchHHHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHH
Confidence            589999999999864322 2222222   235689999999999998 7888888888877777776666555

>smart00053 DYNc Dynamin, GTPase

Probab=96.02  E-value=0.0089  Score=53.37  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      .+++++|..++||||+||+|.+......+ .--+||....+
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~-~g~~t~~p~~i   66 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLIL   66 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccC-CCcccccceEE
Confidence            47999999999999999999986523332 23466666554

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=95.97  E-value=0.017  Score=51.48  Aligned_cols=45  Identities=24%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      -|++.+.+.+..-+-+          .+-...|++||.+|.|||||+|.|.+.+.
T Consensus        27 vGidtI~~Qm~~k~mk----------~GF~FNIMVVgqSglgkstlinTlf~s~v   71 (336)
T KOG1547|consen   27 VGIDTIIEQMRKKTMK----------TGFDFNIMVVGQSGLGKSTLINTLFKSHV   71 (336)
T ss_pred             ccHHHHHHHHHHHHHh----------ccCceEEEEEecCCCCchhhHHHHHHHHH
Confidence            4677666655433221          12346899999999999999999987543

>cd01899 Ygr210 Ygr210 subfamily

Probab=95.97  E-value=0.017  Score=53.74  Aligned_cols=57  Identities=5%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHH-HHHHHhchh
Q 023932          147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR-LAKALASDV  204 (275)
Q Consensus       147 ~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~-~i~~l~~~~  204 (275)
                      .+|+|+|+||+|+....+..+.+.. ......++++||+.+.++++|.+ .+.+++++.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~~~l~~-~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~  271 (318)
T cd01899         214 SKPMVIAANKADIPDAENNISKLRL-KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD  271 (318)
T ss_pred             CCcEEEEEEHHHccChHHHHHHHHh-hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence            5799999999998655433222211 11235799999999999999987 577777654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK07261 topology modulation protein; Provisional

Probab=95.95  E-value=0.005  Score=51.87  Aligned_cols=23  Identities=35%  Similarity=0.710  Sum_probs=20.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +||+|+|.||+|||||...|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37899999999999999998754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=95.94  E-value=0.041  Score=52.97  Aligned_cols=86  Identities=13%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             HHHHHh-hcCeEEEEE-eCC------CCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEe
Q 023932          114 LKDQLK-LMDVVIEVR-DAR------IPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFS  182 (275)
Q Consensus       114 l~~~l~-~aDlVI~Vv-Dar------~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~i  182 (275)
                      +++.+. .+|+.|+|. |+.      ......+..+...|+  ++|+++|+||+|-..... .+..+.+ .+++..++++
T Consensus       137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et-~~l~~~l~eky~vpvl~v  215 (492)
T TIGR02836       137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPET-EALRQELEEKYDVPVLAM  215 (492)
T ss_pred             HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchh-HHHHHHHHHHhCCceEEE
Confidence            556777 999999999 885      333333444555555  899999999999432222 2222233 3346677888


Q ss_pred             cCccccchhhHHHHHHHHh
Q 023932          183 NGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~  201 (275)
                      |+. ....+++.+.+++.+
T Consensus       216 ~c~-~l~~~DI~~il~~vL  233 (492)
T TIGR02836       216 DVE-SMRESDILSVLEEVL  233 (492)
T ss_pred             EHH-HcCHHHHHHHHHHHH
Confidence            885 334455555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.93  E-value=0.0082  Score=51.43  Aligned_cols=25  Identities=32%  Similarity=0.489  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+..
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4568999999999999999998764

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=95.93  E-value=0.0059  Score=50.68  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|++++|.+|||||||++++...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~   23 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTN   23 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999999753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.025  Score=57.80  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             cEEEEeC-CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932           89 DLYYWTK-SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~-~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      --+.|.. ....+=+.||| ..+..++...++-+|.++.|+|+..+....-..+.+.+.  +.|+++++||+|.+..
T Consensus        68 ~s~~~~~~~~iNlIDTPGH-VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          68 TTLFWKGDYRINLIDTPGH-VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             eEEEEcCceEEEEeCCCCc-cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence            3556653 45455578999 567788888999999999999999988777666666654  7899999999998754

>COG3911 Predicted ATPase [General function prediction only]

Probab=95.91  E-value=0.0073  Score=50.11  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      .++.+-|.||+|||||||+|.... ..+.+.+|
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~G-fatvee~~   41 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARAG-FATVEEAG   41 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcC-ceeeccch
Confidence            357788999999999999999766 34444443

>cd04121 Rab40 Rab40 subfamily

Probab=95.89  E-value=0.012  Score=50.25  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+|++++|-++|||||||+++...
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~   29 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDG   29 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3579999999999999999999864

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04103 Centaurin_gamma Centaurin gamma

Probab=95.87  E-value=0.0065  Score=50.18  Aligned_cols=23  Identities=43%  Similarity=0.712  Sum_probs=20.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|++++|.+|||||||+++++..
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~   23 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTG   23 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhC
Confidence            37899999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=95.84  E-value=0.0083  Score=57.74  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..++|+++|.+|+|||||+++|+.
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~   29 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLY   29 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHH
Confidence            457899999999999999999985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.026  Score=47.56  Aligned_cols=59  Identities=19%  Similarity=0.226  Sum_probs=40.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--CCcHHHHHH-----hcCCCeEEEEEcccCcCH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQW-----LGNRKRILVLNREDMISM  162 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s--~~d~~l~~~-----L~~kp~IlVlNK~Dl~~~  162 (275)
                      +.|| ..+.+--++++..+|.|++++|+-+..-  +...++...     +.+.|++|..||+|....
T Consensus        71 LGGH-~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   71 LGGH-LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             cccH-HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence            6777 4445555578999999999999976422  222233333     337899999999998654

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=95.81  E-value=0.037  Score=47.84  Aligned_cols=84  Identities=15%  Similarity=0.017  Sum_probs=55.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HH-HHHhc-----CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LM-DQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l-~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      .++...|..++|++..+..+..+. .+ ..++.     ..|+++|.||+|+....  ..++-.......+..++.+||+.
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~  149 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKL  149 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccC
Confidence            357889999999988765444322 12 22222     45999999999997532  12222333344566789999999


Q ss_pred             ccchhhHHHHHHH
Q 023932          187 GMGTMKLSRLAKA  199 (275)
Q Consensus       187 g~Gi~~L~~~i~~  199 (275)
                      ..+++++...+..
T Consensus       150 ~~~v~~~F~~L~r  162 (196)
T KOG0395|consen  150 NYNVDEVFYELVR  162 (196)
T ss_pred             CcCHHHHHHHHHH
Confidence            9998887665544

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.81  E-value=0.0075  Score=42.49  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=18.2

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      -.+|.|..++|||||+.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999976

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.81  E-value=0.0072  Score=47.11  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=19.2

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |+|.|.||||||||.+.|.+.
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999865

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
1puj_A	282	Structure Of B. Subtilis Ylqf Gtpase Length = 282		2e-32
3cnl_A	262	Crystal Structure Of Gnp-Bound Ylqf From T. Maritim		1e-20
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		3e-06
1xzp_A	482	Structure Of The Gtp-Binding Protein Trme From Ther		4e-05
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		6e-05
1mky_A	439	Structural Analysis Of The Domain Interactions In D		1e-04
1wf3_A	301	Crystal Structure Of Gtp-Binding Protein Tt1341 Fro		1e-04

>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase Length = 282

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 103/159 (64%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           A I+G PNVGKS+LINRL K+ +     RPG+T   ++V
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161

>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima Length = 262

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 19/160 (11%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++              K     V +K+ S     R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLAR 101
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
             IVG PN GKS++IN+L  +R      +PG+T+ +++ S
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256
           IVG PNVGKSSL NRLLK+R    A  PGVTR LK
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40

>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 192 KLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
           +L R+ + L  ++  K+   G LL R +R  IVG PNVGKS+L+NRLL          PG
Sbjct: 219 RLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276
Query: 251 VTR 253
            TR
Sbjct: 277 TTR 279

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 212 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259
           GL+PR    G     IVG PNVGKS++ NR+   R+      PGVTR   Y S
Sbjct: 13  GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS 65

>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG TR
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216

>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            IVG PNVGKS+L+N LL  ++ P +PRP  TR
Sbjct: 11  AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	8e-73
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	1e-63
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	4e-27
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	3e-26
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	1e-09
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	7e-09
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-08
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	9e-06
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	3e-08
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	9e-07
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	5e-08
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	8e-07
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	6e-06
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	7e-06
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	1e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	2e-05
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	2e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	3e-05
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	3e-05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	6e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-04
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-04
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	3e-04
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	5e-04
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	6e-04
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	6e-04
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	7e-04

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score =  223 bits (571), Expect = 8e-73
 Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           +QW+PGH+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D 
Sbjct: 3   IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
              A    W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+R
Sbjct: 63  ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV---SQFFLL 264
           A I+G PNVGKS+LINRL K+ +     RPG+T   ++V    +  LL
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELL 170

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score =  199 bits (509), Expect = 1e-63
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 22/168 (13%)

Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
           + WYPGHI K ++++KD L+L++ V+EVRDAR P +T+   +D     ++ I++LN+ D+
Sbjct: 1   MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58

Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
                   W  +F KQG +VI ++       +                   K    R  R
Sbjct: 59  ADEKTTKKWVEFFKKQGKRVITTHKGEPRKVL-----------------LKKLSFDRLAR 101

Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV---SQFFLL 264
             IVG PN GKS++IN+L  +R      +PG+T+ +++    +   +L
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKIL 149

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score =  106 bits (267), Expect = 4e-27
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 28/162 (17%)

Query: 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170
            + L    K   +V+++ D      +  P + +++GN K +LV N+ D+I  + ++    
Sbjct: 60  LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVK 119

Query: 171 YFAKQGTK--------VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI 222
           ++ +   K        V   +   G G  +L+   +                       +
Sbjct: 120 HWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR--------------GGKDVYV 165

Query: 223 VGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKYV 258
           VG  NVGKS+ INR++K        +   +  PG T  L  +
Sbjct: 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI 207

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score =  104 bits (261), Expect = 3e-26
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 30/175 (17%)

Query: 97  LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNR 156
           ++ V             L    +   +V+ + D      +  P + ++  +   +LV N+
Sbjct: 51  VQDVPLDDDDF---LSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNK 107

Query: 157 EDM----ISMADRNAWATYFAKQG----TKVIFSNGQLGMGTMKLSRLAKALASDVNVKR 208
            D+    +       W    A++       V   +   G+G  K+               
Sbjct: 108 ADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR------- 160

Query: 209 RSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKYV 258
                        +VG  NVGKS+ INR+++       +   +  PG T  +  +
Sbjct: 161 -------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI 208

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257
           IVG PNVGKSSL NRLLK+R    A  PGVTR LK 
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKE 41

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 5/34 (14%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA--PRPGVTR 253
             G  NVGKS+LI RL  ++        RPGVTR
Sbjct: 6   FAGRSNVGKSTLIYRLTGKK---VRRGKRPGVTR 36

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           IVG PNVGKS++ NR+   R+      PGVTR
Sbjct: 8   IVGRPNVGKSTIFNRIAGERISIVEDTPGVTR 39

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTR 253
              ++  ++G PNVGKSSL+N +L + R+   +   G TR
Sbjct: 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI-VSNVAGTTR 211

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           IVG PNVGKS+L N+L+K++        GVTR
Sbjct: 6   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR 37

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%)

Query: 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKR----ILVLNREDMISMADRNAWATYF----- 172
           D+V+ V D +  ++     +  +L  RK     ILV N+ + +   +R      +     
Sbjct: 83  DLVLFVVDGKRGITKEDESLADFL--RKSTVDTILVANKAENLREFEREVKPELYSLGFG 140

Query: 173 ------AKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYP 226
                 A+           + + TM L  + K L  +  +   SK  +  A++  IVG P
Sbjct: 141 EPIPVSAEHN---------INLDTM-LETIIKKLE-EKGLDLESKPEITDAIKVAIVGRP 189

Query: 227 NVGKSSLINRLL-KRRMCPAAPRPGVTR 253
           NVGKS+L N +L K R    +P PG TR
Sbjct: 190 NVGKSTLFNAILNKERAL-VSPIPGTTR 216

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 215 PRAVRA--GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKYV 258
               R    + G  NVGKSS +N L+ + +   +   G T   V K +
Sbjct: 30  DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSM 77

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 193 LSRLAKALASDV-NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251
             +   A    +     + K     ++   ++G   VGKSS +N L+  ++   +P    
Sbjct: 11  FQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE 70

Query: 252 TR 253
             
Sbjct: 71  GL 72

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
            +G   IVG PNVGKS+L+N LL  ++ P +PRP  TR
Sbjct: 6   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR 43

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAA---PRPGVTR 253
           I G PN GKSSL+N L  R    AA      G TR
Sbjct: 9   IAGRPNAGKSSLLNALAGRE---AAIVTDIAGTTR 40

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           + G   IVG PNVGKS+L+N LL  ++   +P+ G TR
Sbjct: 9   KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR 46

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +R G    IVG PNVGKSSL+N   + 
Sbjct: 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQS 247

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 192 KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           ++++L K L S     + +++   +  +P     GIVGY N GK+SL N L
Sbjct: 152 RINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTNSGKTSLFNSL 199

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
           R V  G    I G PN GKS+L+N LL +
Sbjct: 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLGQ 256

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 216 RAVRAG----IVGYPNVGKSSLINRLLKR 240
             +  G    IVG PNVGKS+L+NRLL  
Sbjct: 238 ILLNRGLRMVIVGKPNVGKSTLLNRLLNE 266

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 219 RAG---IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
             G   IVG PNVGKS+L+N+LL +++   + +   TR
Sbjct: 7   YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++G   VGKSS +N ++  R+   +P      
Sbjct: 44  VMGKGGVGKSSTVNSIIGERVVSISPFQSEGP 75

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 208 RRSKGLLPRAVRAGIVGYPNVGKSSLINRL 237
           +    + P      + G PNVGKSS +N +
Sbjct: 20  QGLPSINPHKKTIILSGAPNVGKSSFMNIV 49

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 1/64 (1%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKYVSQFFLL 264
           +    K +    +   + G    GKSS IN L         A + GV  V      +   
Sbjct: 58  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117

Query: 265 KYHQ 268
               
Sbjct: 118 NIPN 121

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA 246
           + GIVG PNVGKS+    + K  +   A
Sbjct: 22  KTGIVGMPNVGKSTFFRAITKSVLGNPA 49

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249
           +   SK L     R  ++G    GKS+ +N L+   + P+   P
Sbjct: 58  ITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP 101

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLK 239
           +++ GIVG PNVGKS+  N L  
Sbjct: 22  SLKIGIVGLPNVGKSTFFNVLTN 44

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLK 239
             + GIVG PNVGKS+L N L K
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTK 24

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 219 RAGIVGYPNVGKSSLINRLLK 239
             GIVG PNVGKS+L N L +
Sbjct: 3   AVGIVGLPNVGKSTLFNALTR 23

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	100.0
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.97
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.81
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.29
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.18
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.16
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.09
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.08
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.02
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.99
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.88
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.88
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.85
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.82
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.8
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.8
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.79
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.78
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.77
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.76
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.76
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.74
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.72
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.7
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.7
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.7
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.69
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.69
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.68
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.68
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.68
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.67
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.67
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.67
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.66
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.66
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.65
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.65
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.65
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.65
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.64
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.64
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.64
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.64
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.63
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.63
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.63
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.62
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.62
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.62
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.62
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.61
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.61
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.61
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.61
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.61
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.61
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.6
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.6
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.6
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.6
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.6
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.6
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.59
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.59
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.59
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.58
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.58
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.58
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.58
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.58
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.57
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.57
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.57
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.57
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.56
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.56
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.56
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.54
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.54
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.54
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.53
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.53
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.53
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.51
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.51
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.51
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.51
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.51
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.51
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.5
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.5
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.49
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.48
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.47
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.47
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.47
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.47
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.47
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.47
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.46
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.46
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.46
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.45
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.45
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.44
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.43
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.43
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.4
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.4
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.4
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.39
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.38
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.38
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.37
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.37
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.37
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.36
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.36
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.36
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.36
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.36
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.36
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.34
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.33
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.33
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.32
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.32
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.31
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.3
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.3
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.3
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.3
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.3
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.29
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.29
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.27
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.27
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.27
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.26
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.26
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.26
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.26
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.26
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.23
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.23
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.22
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.18
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.18
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.18
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.15
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.15
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.14
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.14
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.12
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.11
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.11
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.1
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.09
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.09
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.09
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.07
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.06
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.05
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.04
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.03
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.03
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.02
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.02
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.02
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.02
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.02
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.01
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.0
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.99
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.98
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.98
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.98
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.97
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.95
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.93
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.93
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.92
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.92
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.91
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.9
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.89
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.88
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.88
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.88
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.87
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.87
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.86
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.86
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.85
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.84
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.83
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.83
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.81
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.81
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.81
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.81
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.8
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.79
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.79
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.77
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.77
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.77
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.77
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.76
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.76
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.75
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.74
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.74
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.73
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.73
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.73
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.72
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.7
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.69
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.67
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	97.67
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	97.66
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.66
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.64
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.63
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.62
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.6
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.6
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.6
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.59
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	97.59
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.57
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.56
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.56
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.55
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.55
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.54
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	97.54
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.54
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.53
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.53
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.53
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.52
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.5
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.5
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.5
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.49
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.49
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.48
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.47
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.47
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.45
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.45
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.44
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.43
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.41
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.41
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.4
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.4
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.4
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.49
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	97.35
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.35
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.34
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.31
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.3
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.28
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.24
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.2
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.19
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.18
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.18
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.16
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.15
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.13
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.12
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.1
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.09
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.09
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.09
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.08
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.08
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.07
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.06
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.99
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.96
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.96
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.95
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.94
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.94
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.9
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.86
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	96.86
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.81
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.79
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.74
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.73
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.68
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.68
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.68
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.66
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.63
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.62
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.59
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.53
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.53
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	96.52
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.48
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	96.45
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.4
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.38
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.23
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.2
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.05
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.0
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.98
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.97
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.93
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	95.77
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.74
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.68
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.67
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.61
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.61
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.6
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	95.6
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.59
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.56
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.55
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.53
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	95.52
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.51
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.45
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.42
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.36
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.34
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.33
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.32
1g6h_A	257	High-affinity branched-chain amino acid transport	95.31
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.3
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.29
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.27
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.26
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.26
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.24
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.23
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.23
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.2
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.19
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.17
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.17
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.17
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.16
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.15
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.14
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.13
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.1
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.08
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.07
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.07
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.05
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.04
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.04
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.03
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.98
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.87
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	94.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.82
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.79
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.75
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.75
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.74
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.72
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.7
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.68
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.66
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.64
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.64
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.63
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.6
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.6
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.57
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.56
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.5
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.5
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.48
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.42
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.41
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.39
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.36
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.34
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.33
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.31
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.28
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.28
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.25

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-34  Score=261.43  Aligned_cols=172  Identities=38%  Similarity=0.674  Sum_probs=136.0

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV  179 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v  179 (275)
                      |+||||||.++++++.+.++++|+|++|+|+|+|.+..++.+.+++.++|.++|+||+|+++....++|.+++.+.++.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~   82 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS   82 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence            89999999999999999999999999999999999999889999999999999999999998877788999987778889


Q ss_pred             EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +++||+++.|+++|.+.+.++......+...++..+.+++++++|+||||||||||+|++++.+.+++.|||||+.+++.
T Consensus        83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~  162 (282)
T 1puj_A           83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK  162 (282)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence            99999999999999998887766443333444555678999999999999999999999999999999999999999887


Q ss_pred             ---EEEeeccccccc
Q 023932          260 ---QFFLLKYHQKCK  271 (275)
Q Consensus       260 ---~~~~~~~~~~~~  271 (275)
                         .+.+.+++|+..
T Consensus       163 ~~~~~~l~DtpG~~~  177 (282)
T 1puj_A          163 VGKELELLDTPGILW  177 (282)
T ss_dssp             ETTTEEEEECCCCCC
T ss_pred             eCCCEEEEECcCcCC
Confidence               378899998754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.97  E-value=6.2e-31  Score=235.42  Aligned_cols=153  Identities=33%  Similarity=0.602  Sum_probs=119.5

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeE
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI  180 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi  180 (275)
                      |||||||.++++++++.++++|+||+|+|+|+|.+..++.+. ++ ++|.++|+||+||++....++|.+++.+.|+.+ 
T Consensus         2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-   78 (262)
T 3cnl_A            2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-   78 (262)
T ss_dssp             -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred             CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence            799999999999999999999999999999999988877666 66 999999999999998877788999998878888 


Q ss_pred             EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-
Q 023932          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-  259 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-  259 (275)
                      ++||+++.|+++|.+.+....                .+++++|.||||||||||+|.++..+.++++||+|++.+++. 
T Consensus        79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~  142 (262)
T 3cnl_A           79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL  142 (262)
T ss_dssp             EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred             EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence            999999999988876643321                579999999999999999999998889999999999999887 


Q ss_pred             --EEEeecccccccc
Q 023932          260 --QFFLLKYHQKCKV  272 (275)
Q Consensus       260 --~~~~~~~~~~~~~  272 (275)
                        .+.+.+++|+...
T Consensus       143 ~~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          143 ENGVKILDTPGILYK  157 (262)
T ss_dssp             TTSCEEESSCEECCC
T ss_pred             CCCEEEEECCCcccC
Confidence              4678899887653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.89  E-value=8.8e-23  Score=190.75  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCH----HHHHHHHHH-HHHcCC---ee
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---KV  179 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~----~~~~~~~~~-~~~~g~---~v  179 (275)
                      ..+.+.+.++.+.+++|++|+|++++.+.....+.+++.++|+++|+||+|+++.    ....+|+.. +++.|+   .+
T Consensus        59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v  138 (369)
T 3ec1_A           59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV  138 (369)
T ss_dssp             CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred             HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence            4455666667789999999999999988888888888889999999999999865    234555543 455565   78


Q ss_pred             EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCccccc
Q 023932          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV  254 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~  254 (275)
                      +++||++|.|+++|.+.+.++..              ..+++++|.||||||||||+|++.     ..+.+++.||||++
T Consensus       139 ~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~  204 (369)
T 3ec1_A          139 CLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD  204 (369)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred             EEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence            99999999999999998876642              236999999999999999999987     67889999999999


Q ss_pred             ceEEE---EEEeeccccccccc
Q 023932          255 LKYVS---QFFLLKYHQKCKVT  273 (275)
Q Consensus       255 ~~~v~---~~~~~~~~~~~~~~  273 (275)
                      ...+.   .+.+.++||+..-+
T Consensus       205 ~~~~~~~~~~~liDtPG~~~~~  226 (369)
T 3ec1_A          205 MIEIPLESGATLYDTPGIINHH  226 (369)
T ss_dssp             EEEEECSTTCEEEECCSCCCCS
T ss_pred             eEEEEeCCCeEEEeCCCcCcHH
Confidence            98887   46888999986543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.88  E-value=2.1e-22  Score=188.16  Aligned_cols=152  Identities=24%  Similarity=0.295  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH----HHHHHHHH-HHHcCC---ee
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV  179 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~----~~~~~~~~-~~~~g~---~v  179 (275)
                      ..+.+.++++.+.+|++++|+|++++.......+.+++.++|+++|+||+|+.+..    ...+|+.. +.+.|+   .+
T Consensus        57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v  136 (368)
T 3h2y_A           57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV  136 (368)
T ss_dssp             HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred             HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence            44556666677788899999999987666667778887899999999999997643    34556544 445566   78


Q ss_pred             EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC------CccccCCCCcccc
Q 023932          180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTR  253 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs~~pGtTr  253 (275)
                      +++||++|.|+++|.+.+.++..              ..+++++|.||||||||||+|++.      ....+++.||||+
T Consensus       137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~  202 (368)
T 3h2y_A          137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL  202 (368)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred             EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence            99999999999999998876542              246999999999999999999975      2566899999999


Q ss_pred             cceEEE---EEEeeccccccccc
Q 023932          254 VLKYVS---QFFLLKYHQKCKVT  273 (275)
Q Consensus       254 ~~~~v~---~~~~~~~~~~~~~~  273 (275)
                      +...+.   .+.+.++||+..-+
T Consensus       203 ~~~~~~~~~~~~liDtPG~~~~~  225 (368)
T 3h2y_A          203 DLIDIPLDEESSLYDTPGIINHH  225 (368)
T ss_dssp             CEEEEESSSSCEEEECCCBCCTT
T ss_pred             ceEEEEecCCeEEEeCCCcCcHH
Confidence            999887   36889999986543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=5.4e-22  Score=189.02  Aligned_cols=168  Identities=19%  Similarity=0.187  Sum_probs=115.9

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN  166 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~  166 (275)
                      .+..||+.......-.+....+.++...+++++|+||+|+|++.+.+..+..+..++.  ++|+++|+||+|+....+ .
T Consensus        50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~-~  128 (439)
T 1mky_A           50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE-R  128 (439)
T ss_dssp             EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH-H
T ss_pred             EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH-H
Confidence            4677876542210001123456677788899999999999999988877777878776  899999999999864311 1


Q ss_pred             HHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932          167 AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA  245 (275)
Q Consensus       167 ~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v  245 (275)
                      .....+.+.+. +++++||++|.|+++|.+.+.+..++......+....+..++++|+|.||||||||+|+|++.....+
T Consensus       129 ~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v  208 (439)
T 1mky_A          129 EVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALV  208 (439)
T ss_dssp             HTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEE
T ss_pred             HHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCccccc
Confidence            22122335565 78999999999999999888765543210000100123468999999999999999999999988899


Q ss_pred             CCCCcccccceE
Q 023932          246 APRPGVTRVLKY  257 (275)
Q Consensus       246 s~~pGtTr~~~~  257 (275)
                      ++.||||++...
T Consensus       209 ~~~~gtT~d~~~  220 (439)
T 1mky_A          209 SPIPGTTRDPVD  220 (439)
T ss_dssp             CCCC------CC
T ss_pred             CCCCCCcCCceE
Confidence            999999998753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=1.8e-21  Score=185.31  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecC
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG  184 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSa  184 (275)
                      ..+.++...+++++|++|+|+|++++.+..+..+.+++.  ++|+++|+||+|+.....  ...+ +.+.+. .++++||
T Consensus        70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~-~~~lg~~~~~~iSA  146 (436)
T 2hjg_A           70 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD-FYSLGFGEPYPISG  146 (436)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS-SGGGSSCCCEECBT
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH-HHHcCCCCeEEEeC
Confidence            456677778899999999999999988877777888775  789999999999875421  1112 224454 7899999


Q ss_pred             ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-----
Q 023932          185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-----  259 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-----  259 (275)
                      ++|.|+++|.+.+.+..++..    +....+...+++++|.||||||||+|+|++.....+++.||||++.....     
T Consensus       147 ~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~  222 (436)
T 2hjg_A          147 THGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ  222 (436)
T ss_dssp             TTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT
T ss_pred             cCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC
Confidence            999999999998877665321    11123456899999999999999999999998888999999999975322     


Q ss_pred             -EEEeeccccc
Q 023932          260 -QFFLLKYHQK  269 (275)
Q Consensus       260 -~~~~~~~~~~  269 (275)
                       .+.+.+++|.
T Consensus       223 ~~~~l~DT~G~  233 (436)
T 2hjg_A          223 QEFVIVDTAGM  233 (436)
T ss_dssp             EEEEETTHHHH
T ss_pred             eEEEEEECCCc
Confidence             2445555554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=6.7e-21  Score=182.28  Aligned_cols=209  Identities=18%  Similarity=0.211  Sum_probs=131.7

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCCCCcch-------------hhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHH
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNSNGSIE-------------AYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKEL  114 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l  114 (275)
                      ..|.|.+||..+  .+|+++-++..-..             .......|.  ...+..||+.... ..-.+.+..+.++.
T Consensus        22 ~~~~V~lvG~~n--vGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDT~G~~-~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPN--VGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--NYDFNLIDTGGID-IGDEPFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSS--SSHHHHHHHHEEEEEC-----------CEEEECTTC--SSCCEEECCCC-------CCHHHHHHHH
T ss_pred             CCCEEEEECCCC--CcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC--CceEEEEECCCCC-CcchHHHHHHHHHH
Confidence            357999999832  34666554332111             111112222  2356667644321 00011256677788


Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchh
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTM  191 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~  191 (275)
                      ..+++++|++|+|+|++.+.+..+..+.+++.  ++|+++|+||+|+....  ..+.+ +...+. .++++||++|.|+.
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e-~~~lg~~~~~~iSA~~g~gv~  173 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYD-FYSLGFGEPYPISGTHGLGLG  173 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC-SGGGSSSSEEECCTTTCTTHH
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHH-HHHcCCCceEEeecccccchH
Confidence            88899999999999999988888888888886  78999999999987432  11212 223343 57899999999999


Q ss_pred             hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeec
Q 023932          192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLK  265 (275)
Q Consensus       192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~  265 (275)
                      +|.+.+.+......    .....+...+++++|.||||||||+|+|++.++..+++.||||++.....      .+.+.+
T Consensus       174 ~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~D  249 (456)
T 4dcu_A          174 DLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVD  249 (456)
T ss_dssp             HHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETT
T ss_pred             HHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEE
Confidence            99888766543221    11223457899999999999999999999988899999999999984332      345666


Q ss_pred             ccc
Q 023932          266 YHQ  268 (275)
Q Consensus       266 ~~~  268 (275)
                      ++|
T Consensus       250 T~G  252 (456)
T 4dcu_A          250 TAG  252 (456)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            666

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.81  E-value=2.6e-20  Score=170.07  Aligned_cols=136  Identities=19%  Similarity=0.205  Sum_probs=103.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH----HHHHHHHHHHcCCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      .++++|+|++|+|++.|..+.+ .+.++|     .+++.+||+||+||.+..+    .+.|.+.|.+.|++++++|+.++
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~  161 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ  161 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            5799999999999999988876 777877     3789999999999987644    57888888888999999999999


Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEEE
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVSQ  260 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~~  260 (275)
                      .|+++|.+..                  .+..++|+|.+|||||||||+|.+.....++.++       +||++.++++.
T Consensus       162 ~g~~~L~~~~------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~  223 (307)
T 1t9h_A          162 DSLADIIPHF------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT  223 (307)
T ss_dssp             TTCTTTGGGG------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred             CCHHHHHhhc------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence            9988776542                  1236899999999999999999988777888777       68888777663


Q ss_pred             --EEeeccccccc
Q 023932          261 --FFLLKYHQKCK  271 (275)
Q Consensus       261 --~~~~~~~~~~~  271 (275)
                        .++.+++++..
T Consensus       224 ~~g~v~dtpg~~~  236 (307)
T 1t9h_A          224 SGGLVADTPGFSS  236 (307)
T ss_dssp             TTEEEESSCSCSS
T ss_pred             CCEEEecCCCccc
Confidence              57788887654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.77  E-value=3e-18  Score=155.83  Aligned_cols=134  Identities=20%  Similarity=0.293  Sum_probs=103.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      +++++|++|+|+|+++|..+.+ .+.+|+     .++|+++|+||+||.+..+   .+++.+++.+.++.++++||++|.
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~  154 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE  154 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            5799999999999998754433 345554     3789999999999987642   566777777778899999999999


Q ss_pred             chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--
Q 023932          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS--  259 (275)
Q Consensus       189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~--  259 (275)
                      |+++|.+.+.                  ...++++|.+|||||||||+|. .....++.+..       ||++...++  
T Consensus       155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~  215 (302)
T 2yv5_A          155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG  215 (302)
T ss_dssp             THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred             CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence            9998876632                  1257999999999999999999 87778888875       777665554  


Q ss_pred             -EEEeecccccc
Q 023932          260 -QFFLLKYHQKC  270 (275)
Q Consensus       260 -~~~~~~~~~~~  270 (275)
                       ..++..++++.
T Consensus       216 ~~g~v~d~pg~~  227 (302)
T 2yv5_A          216 KGSFVGDTPGFS  227 (302)
T ss_dssp             TTEEEESSCCCS
T ss_pred             CCcEEEECcCcC
Confidence             24666666653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.73  E-value=1.4e-17  Score=154.90  Aligned_cols=115  Identities=23%  Similarity=0.292  Sum_probs=90.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      +..++++|.|++| |++.|....+ .+.++|     .+++.+||+||+||.+...   .++|..+|.+.|+.++++|+++
T Consensus       125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3456999999965 7788765544 677776     3789999999999998754   5678888888899999999999


Q ss_pred             ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCC
Q 023932          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP  249 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~p  249 (275)
                      +.|+++|...+    .              +..++|+|.+|||||||||+|++... ..++.++
T Consensus       203 ~~gl~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~  248 (358)
T 2rcn_A          203 QDGLKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS  248 (358)
T ss_dssp             TBTHHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred             CcCHHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence            99998877542    1              23689999999999999999999877 7767665

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=1e-16  Score=145.51  Aligned_cols=133  Identities=20%  Similarity=0.301  Sum_probs=94.1

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      +++++|++|+|+|++++.++. ..+..|+     .+.|++||+||+||.+..+   ..++.+.+... ..++++||++|.
T Consensus        81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~  158 (301)
T 1u0l_A           81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM  158 (301)
T ss_dssp             TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred             ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence            679999999999999875433 2344454     3789999999999987644   33444444332 789999999999


Q ss_pred             chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--
Q 023932          189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS--  259 (275)
Q Consensus       189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~--  259 (275)
                      |++++.+.+.                  ...++++|.+|+|||||||+|.+.....++.+..       +|+..+.++  
T Consensus       159 gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~  220 (301)
T 1u0l_A          159 GIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD  220 (301)
T ss_dssp             THHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred             CHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcC
Confidence            9998876632                  1257999999999999999999887777776664       677665544  


Q ss_pred             -EEEeeccccc
Q 023932          260 -QFFLLKYHQK  269 (275)
Q Consensus       260 -~~~~~~~~~~  269 (275)
                       ..++..++++
T Consensus       221 ~~g~v~q~p~~  231 (301)
T 1u0l_A          221 FGGYVVDTPGF  231 (301)
T ss_dssp             TSCEEESSCSS
T ss_pred             CCCEEEECcCC
Confidence             2355566654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.29  E-value=2e-13  Score=126.33  Aligned_cols=148  Identities=16%  Similarity=0.083  Sum_probs=101.8

Q ss_pred             CeEEEEEeCCCCCCCCcHHHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-c-CCeeEEecCccccchhhHHH
Q 023932          122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~-g~~vi~iSak~g~Gi~~L~~  195 (275)
                      |.+-.++|++.++...++.+.+++    ..+++++++||+|+......+.|.+++.. . +.....+++..+.+...+.+
T Consensus        59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (357)
T 2e87_A           59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS  138 (357)
T ss_dssp             HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            344456677766667777776665    56788899999999988877888888865 2 44444455555555555555


Q ss_pred             HHHHHhchh-------hhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE------EE
Q 023932          196 LAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ------FF  262 (275)
Q Consensus       196 ~i~~l~~~~-------~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~------~~  262 (275)
                      .+.++....       ...+..........+++++|.||||||||||+|++.. ..+++.|++|++.+....      +.
T Consensus       139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~  217 (357)
T 2e87_A          139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ  217 (357)
T ss_dssp             HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence            544332221       1111122223456899999999999999999999876 678889999999876542      56


Q ss_pred             eecccccc
Q 023932          263 LLKYHQKC  270 (275)
Q Consensus       263 ~~~~~~~~  270 (275)
                      +.+++|..
T Consensus       218 l~Dt~G~~  225 (357)
T 2e87_A          218 IIDTPGLL  225 (357)
T ss_dssp             EEECTTTS
T ss_pred             EEeCCCcc
Confidence            77777753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.18  E-value=1.8e-11  Score=111.12  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-C--CeeEE
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G--TKVIF  181 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l-~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-g--~~vi~  181 (275)
                      .+.+.....++.+|++++|+|+.++.+..+..+ ...+.  +.|+++|+||+|+. +........+.+.+. +  ..+++
T Consensus        81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            345666778899999999999998776666555 55554  68999999999998 555555555555443 3  57999


Q ss_pred             ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcce
Q 023932          182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV  218 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~  218 (275)
                      +||++|.|+++|.+.+.+..++....++.+...+.+.
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~  197 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPL  197 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCH
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCH
Confidence            9999999999999999988877666666655555443

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.16  E-value=3.8e-11  Score=99.53  Aligned_cols=107  Identities=17%  Similarity=0.012  Sum_probs=64.2

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHH-HHHHHHHHHHHcCCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      .....++++|++|+|+|+.++.+..+  ..+..+..     +.|+++|+||+|+.... ..++...+..+.+..++.+||
T Consensus        80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (195)
T 1x3s_A           80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA  159 (195)
T ss_dssp             SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecC
Confidence            34567899999999999987533221  11222221     56899999999995432 123334445556778999999


Q ss_pred             ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhH
Q 023932          185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS  232 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKST  232 (275)
                      +++.|++++.+.|.+...+....+.             -+.+|+||||
T Consensus       160 ~~~~gi~~l~~~l~~~~~~~~~~~~-------------~~~~n~gkSs  194 (195)
T 1x3s_A          160 KTCDGVQCAFEELVEKIIQTPGLWE-------------SENQNSGPSS  194 (195)
T ss_dssp             TTCTTHHHHHHHHHHHHHTSGGGTC-------------C---------
T ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhc-------------ccccCCCCCC
Confidence            9999999999887765543322211             1345999997

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.09  E-value=1e-09  Score=93.30  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=77.1

Q ss_pred             ccEEEEeCCCccccccchh-HHHHHHHHHHHHhh---cCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~-~~~~~k~l~~~l~~---aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      ..+..||+....-...+.. .......+..++..   +|++|+|+|++++....+..+..++.  ++|+++|+||+|+.+
T Consensus        79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~  158 (223)
T 4dhe_A           79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT  158 (223)
T ss_dssp             CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred             CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence            4567777443211111111 23333444455555   88899999999877766666667665  789999999999987


Q ss_pred             HHHHHH----HHHHHHH-------cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          162 MADRNA----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       162 ~~~~~~----~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ..+...    +.+.+..       .+..++++||++|.|+++|.+.|.+....
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          159 RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            654332    2233333       23579999999999999999998877654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.08  E-value=3.6e-10  Score=93.83  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHhhc---CeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCe
Q 023932          109 KTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-----QGTK  178 (275)
Q Consensus       109 ~~~k~l~~~l~~a---DlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~  178 (275)
                      ........++..+   |++++|+|+.++.+..+..+..++.  +.|+++|+||+|+.+..+.....+.+.+     .+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 1svi_A           91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE  170 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred             HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence            3333444555555   9999999999877666666666664  7899999999999876544333233322     2468


Q ss_pred             eEEecCccccchhhHHHHHHHHh
Q 023932          179 VIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       179 vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ++++||++|.|+++|.+.|.+..
T Consensus       171 ~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          171 LILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999999999998876543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.02  E-value=9.3e-10  Score=90.87  Aligned_cols=84  Identities=26%  Similarity=0.396  Sum_probs=62.3

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHH----HHHHcC-CeeEEecCccccchh
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAKQG-TKVIFSNGQLGMGTM  191 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~----~~~~~g-~~vi~iSak~g~Gi~  191 (275)
                      ..+|++++|+|+..+....+..+..++.  +.|+++|+||+|+.+..+.....+    .+...+ ..++++||++|.|++
T Consensus       103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~  182 (195)
T 3pqc_A          103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGIS  182 (195)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHH
T ss_pred             cCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            3459999999998876666666666665  789999999999986554433322    232223 589999999999999


Q ss_pred             hHHHHHHHHhc
Q 023932          192 KLSRLAKALAS  202 (275)
Q Consensus       192 ~L~~~i~~l~~  202 (275)
                      ++.+.|.+...
T Consensus       183 ~l~~~l~~~l~  193 (195)
T 3pqc_A          183 ELLDLISTLLK  193 (195)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99998876653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.99  E-value=2.8e-10  Score=106.28  Aligned_cols=53  Identities=28%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC  270 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~  270 (275)
                      ..+|+|||+||||||||+|+|++.+ +.+++.||||++...-.      .+.+.+++|+.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~  130 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGII  130 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence            3589999999999999999999876 88999999999985322      24555666553

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.93  E-value=9.9e-09  Score=96.28  Aligned_cols=106  Identities=17%  Similarity=0.144  Sum_probs=75.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CcHHHHHH---hcCCCeEEEEEcccCcCHH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLMDQW---LGNRKRILVLNREDMISMA  163 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-~d~~l~~~---L~~kp~IlVlNK~Dl~~~~  163 (275)
                      ..+..||        .||| ..+.+.+...+..+|++|+|+|++++... ...+....   +..+|+++|+||+|+.+..
T Consensus        75 ~~~~iiD--------tPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           75 RRISFID--------APGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             EEEEEEE--------CCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred             ceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence            3456666        5787 56777788889999999999999987522 22222222   2346899999999999876


Q ss_pred             HHHHHHHHHHH----c---CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       164 ~~~~~~~~~~~----~---g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +..+..+.+.+    .   +..++++||++|.|+++|.+.|.+..+
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            54443333322    1   357999999999999999999887544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.92  E-value=4.2e-11  Score=111.41  Aligned_cols=182  Identities=17%  Similarity=0.091  Sum_probs=86.2

Q ss_pred             CCCCCCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHH--HHHhhcCeEEEEEeCCCCCCC-C-cHHH
Q 023932           66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLKLMDVVIEVRDARIPLST-T-HPLM  141 (275)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~--~~l~~aDlVI~VvDar~p~s~-~-d~~l  141 (275)
                      ..+.+-|....+-++..- ....|.++++..+.+     +.....++.+.  +.+...|+||.|+|+|.+..+ . ...+
T Consensus        36 ~~~~~~~~g~gk~~e~~~-~~~~~~v~~~~~l~p-----~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l  109 (364)
T 2qtf_A           36 SPNVKFYIQYDKLQQIKN-DEEISTLIIFEQLKP-----RHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL  109 (364)
T ss_dssp             SCBTTTBSCHHHHHHHHT-CTTCCEEEESSCCCH-----HHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CCCCcceechhHHHHHhh-ccCCCEEEECCCCCH-----HHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH
Confidence            444455554444444333 678899999977644     44667777776  578999999999999987554 2 3344


Q ss_pred             HHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcc--ccchhhHHHHHHHHhchhhhh----hhcCC-C
Q 023932          142 DQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL--GMGTMKLSRLAKALASDVNVK----RRSKG-L  213 (275)
Q Consensus       142 ~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~--g~Gi~~L~~~i~~l~~~~~~~----~~~~~-~  213 (275)
                      ..+...+|.+              ..|..+++..+ +.+-- ...+  ......+...+..+..+....    ...+. .
T Consensus       110 a~l~~~~~rl--------------~~~~~l~~~~~~i~~~g-~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r  174 (364)
T 2qtf_A          110 ARLKYELPII--------------KETYTKSKIGEQQGPLG-AGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESN  174 (364)
T ss_dssp             HHHHHHHHHH--------------HHC----------------------CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHhhhchhh--------------hhhhHHHHhcCCCCcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3332222211              13322222211 11000 0000  000112222232222221110    00111 1


Q ss_pred             CCccee-EEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          214 LPRAVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       214 ~~~~~r-v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ...+++ ++|+|+||||||||+|+|.+.. ..+++.||+|+|.....      .+.+.+++|+
T Consensus       175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~  236 (364)
T 2qtf_A          175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF  236 (364)
T ss_dssp             ----CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred             hhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence            122344 9999999999999999999876 57889999999986543      2345666664

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.92  E-value=1.2e-09  Score=98.88  Aligned_cols=130  Identities=12%  Similarity=0.000  Sum_probs=85.3

Q ss_pred             CccEEEEeCCCccccccchhH-HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcC
Q 023932           87 DADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMIS  161 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~-~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~  161 (275)
                      ...+..||+....  .....+ ..+.+.....++.+|++++|+|+.++.+..+..+.+.+.    +.|+++|+||+|+..
T Consensus        54 ~~~l~l~DTpG~~--~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~  131 (301)
T 1wf3_A           54 RRQIVFVDTPGLH--KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK  131 (301)
T ss_dssp             TEEEEEEECCCCC--CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred             CcEEEEecCcccc--chhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence            3456777754321  111111 224566677889999999999998876665555555554    689999999999986


Q ss_pred             HHH-HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCC-CCccee
Q 023932          162 MAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAVR  219 (275)
Q Consensus       162 ~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~-~~~~~r  219 (275)
                      ... ..+..+.+ .....++++||++|.|+++|.+.+.+..++....++++.. ++.+.+
T Consensus       132 ~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~  190 (301)
T 1wf3_A          132 YPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFG  190 (301)
T ss_dssp             SHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHH
T ss_pred             chHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHH
Confidence            544 33333333 1124689999999999999999988776655545544444 444433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.88  E-value=1.3e-10  Score=96.65  Aligned_cols=107  Identities=17%  Similarity=0.109  Sum_probs=69.0

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc------------CCCeEE
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRIL  152 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~------------~kp~Il  152 (275)
                      ...+..||+        ||+ .........+++++|++|+|+|+.++.+...  ..+..++.            +.|+++
T Consensus        62 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil  132 (199)
T 4bas_A           62 RVAFTVFDM--------GGA-KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF  132 (199)
T ss_dssp             TEEEEEEEE--------CCS-GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred             CEEEEEEEC--------CCC-HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence            345566663        444 2222333356789999999999987643221  22333322            679999


Q ss_pred             EEEcccCcCHHHHHHHHHHH------HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          153 VLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       153 VlNK~Dl~~~~~~~~~~~~~------~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      |+||+|+......+++...+      ...+..++.+||++|.|++++.+.|.+...
T Consensus       133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          133 FANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS  188 (199)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence            99999998653222222222      224567899999999999999988776554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.88  E-value=3e-09  Score=85.05  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL  186 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~  186 (275)
                      ..+.....++.+|++++|+|+.++.+..+..+..++.  +.|+++|+||+|+....+  .. ..+.+.+. .++++||++
T Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~-~~~~~~~~~~~~~~Sa~~  145 (161)
T 2dyk_A           69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YL-GPLYGLGFGDPIPTSSEH  145 (161)
T ss_dssp             HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GC-GGGGGGSSCSCEECBTTT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hH-HHHHhCCCCCeEEEeccc
Confidence            4455566789999999999999876665556666664  789999999999976522  11 12224565 789999999


Q ss_pred             ccchhhHHHHHHHH
Q 023932          187 GMGTMKLSRLAKAL  200 (275)
Q Consensus       187 g~Gi~~L~~~i~~l  200 (275)
                      |.|++++.+.+.+.
T Consensus       146 ~~gv~~l~~~l~~~  159 (161)
T 2dyk_A          146 ARGLEELLEAIWER  159 (161)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHh
Confidence            99999998887654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.88  E-value=1.6e-08  Score=96.06  Aligned_cols=95  Identities=17%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHh--cCCC-eEEEEEcccCcCH----HHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDMISM----ADR  165 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~~L--~~kp-~IlVlNK~Dl~~~----~~~  165 (275)
                      +-+.||| ..+.+.+...+..+|++|+|+|++++..       ....+....+  .+.| +++|+||+|+...    ...
T Consensus        99 iiDTPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~  177 (439)
T 3j2k_7           99 ILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERY  177 (439)
T ss_pred             EEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHH
Confidence            3457998 6778888888999999999999998753       1222222222  2666 8999999999641    111


Q ss_pred             ----HHHHHHHHHcC------CeeEEecCccccchhhHHH
Q 023932          166 ----NAWATYFAKQG------TKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       166 ----~~~~~~~~~~g------~~vi~iSak~g~Gi~~L~~  195 (275)
                          ++...++.+.+      ..++++||++|.|+.++.+
T Consensus       178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                22233333333      3589999999999998543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.87  E-value=1.7e-09  Score=99.79  Aligned_cols=151  Identities=16%  Similarity=0.102  Sum_probs=86.7

Q ss_pred             CeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEE--eC-CCccccccchhHHH------HHHHHHHHHhh
Q 023932           50 PIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYW--TK-SLRPVQWYPGHIAK------TEKELKDQLKL  120 (275)
Q Consensus        50 ~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~~~~i~~~pG~~~~------~~k~l~~~l~~  120 (275)
                      +.|.+||.  ++-.|+++.++...+........+..+...+-..  +. ....+-+.||+...      +..++.+.+++
T Consensus       159 a~V~lvG~--~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          159 ADVGLVGF--PSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CCEEEESS--TTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeeeeeCC--CCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            45678887  2234777776554433222222233333322111  11 11123346886542      33556667888


Q ss_pred             cCeEEEEEeCCCCC-----CCCcH---HHHHH---hcCCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCcccc
Q 023932          121 MDVVIEVRDARIPL-----STTHP---LMDQW---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       121 aDlVI~VvDar~p~-----s~~d~---~l~~~---L~~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      +|++|+|+|+.+..     ...+.   ++..+   +.++|+++|+||+|+....+ .+++.+.+. ....++++||+++.
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-DDYPVFPISAVTRE  315 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-SCCCBCCCSSCCSS
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-cCCCEEEEECCCCc
Confidence            99999999996521     11111   11121   13689999999999986542 222222221 11578999999999


Q ss_pred             chhhHHHHHHHHhch
Q 023932          189 GTMKLSRLAKALASD  203 (275)
Q Consensus       189 Gi~~L~~~i~~l~~~  203 (275)
                      |+++|.+.|.+...+
T Consensus       316 gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          316 GLRELLFEVANQLEN  330 (342)
T ss_dssp             TTHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999988877654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.86  E-value=2.1e-10  Score=95.33  Aligned_cols=88  Identities=14%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeE
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVI  180 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi  180 (275)
                      ...++++|++|+|+|+.++.+..+  ..+..++       .+.|+++|+||+|+......++..+.+.     ..+..++
T Consensus        85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (190)
T 2h57_A           85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC  164 (190)
T ss_dssp             GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence            356789999999999987532211  2233332       3579999999999976433333333332     1246789


Q ss_pred             EecCccccchhhHHHHHHHHhc
Q 023932          181 FSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+||++|.|+++|.+.|.+...
T Consensus       165 ~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          165 ASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EccCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999998876553

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.86  E-value=3.8e-09  Score=104.21  Aligned_cols=131  Identities=18%  Similarity=0.099  Sum_probs=91.7

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-QGT-  177 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-  177 (275)
                      +.||| ..+...+...++.+|.+|+|+|+.++...........+  .+.|+++|+||+|+..... .+..+.+.+ .+. 
T Consensus        77 DTPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           77 DTPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGID  154 (599)
T ss_dssp             ECCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCC
T ss_pred             ECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH-HHHHHHHHHHhCCC
Confidence            36888 45666778889999999999999987665443332222  2789999999999975321 122222222 243 


Q ss_pred             --eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEee---CCCChhHHHHHHhcC
Q 023932          178 --KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINRLLKR  240 (275)
Q Consensus       178 --~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~---pNvGKSTLIN~Ll~~  240 (275)
                        +++++||++|.|+++|++.+.+..+...      +..+.+.+..++..   +++|+.++++-+.+.
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~------~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~  216 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE------GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT  216 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSCCCC------CCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCCCcc------ccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence              4899999999999999998877654321      12345667777776   999999988777653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.85  E-value=2.1e-09  Score=88.83  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=71.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh-------cCCCeEEEEEc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNR  156 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~----~l~~~L-------~~kp~IlVlNK  156 (275)
                      ..+..||+        ||+ ..........++++|++|+|+|+.++....+.    .+..|+       .+.|+++|+||
T Consensus        74 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK  144 (198)
T 3t1o_A           74 TRFHLYTV--------PGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK  144 (198)
T ss_dssp             EEEEEEEC--------CSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred             eEEEEEeC--------CCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence            35777874        342 12223334578999999999999854222221    233333       36799999999


Q ss_pred             ccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932          157 EDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       157 ~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +|+......++..+++.+.+. .++.+||++|.|++++.+.|.+..
T Consensus       145 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i  190 (198)
T 3t1o_A          145 RDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV  190 (198)
T ss_dssp             TTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             hhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            999765444455555555677 899999999999999988776544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.85  E-value=3.9e-10  Score=93.77  Aligned_cols=99  Identities=7%  Similarity=-0.035  Sum_probs=66.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+...  ..+..++     .+.|+++|+||+|+......+++.+.+.. 
T Consensus        74 t~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  152 (188)
T 1zd9_A           74 IGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS  152 (188)
T ss_dssp             ECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             CCCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh
Confidence            5665 3444555667899999999999986533221  2233332     26799999999999754332333333221 


Q ss_pred             ----cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 ----QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ----~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                          .+..++++||++|.|+++|.+.|.+...
T Consensus       153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          153 AIQDREICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             hhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence                2346899999999999999988776543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.82  E-value=5.5e-09  Score=83.87  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=68.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||+        ||+ ..........++++|++++|+|+.++.+..  ...+..++.     +.|+++|+||+|+.
T Consensus        44 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           44 ISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP  114 (164)
T ss_dssp             CEEEEEEC--------CCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEEEEc--------CCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence            45777873        454 223334455789999999999998763222  122333332     67999999999997


Q ss_pred             CHHHHHHHHHHHHH-----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          161 SMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       161 ~~~~~~~~~~~~~~-----~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .....+++...+..     .+..++.+||++|.|++++.+.+.+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             TCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            64322333333221     234689999999999999998876554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.81  E-value=6.2e-09  Score=86.07  Aligned_cols=107  Identities=10%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++++|++|+|+|+.++.+...  ..+..++     .+.|+++|+||+|+.
T Consensus        60 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           60 TRFLMWD--------IGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  130 (187)
T ss_dssp             EEEEEEE--------CCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred             EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence            4566776        3554 2233334567899999999999987643221  2233333     267999999999997


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      .....++..+.+.     ..+..++.+||++|.|++++.+.|.+....
T Consensus       131 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          131 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            6422233333332     234578999999999999999988776543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.80  E-value=8.2e-09  Score=84.81  Aligned_cols=106  Identities=12%  Similarity=0.027  Sum_probs=71.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHH-Hh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQ-WL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~-~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++++|++|+|+|+.++.+..+ ..+.. +.     .+.|+++|+||+|+.
T Consensus        70 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (195)
T 3bc1_A           70 IHLQLWD--------TAGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE  140 (195)
T ss_dssp             EEEEEEE--------ECCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred             EEEEEEe--------CCCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            3566666        4555 3344455667899999999999987543322 11111 11     367999999999997


Q ss_pred             CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ...  ..+...++....+..++++||+++.|++++.+.|.+...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          141 DQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             GGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            532  123333444456778999999999999999888776543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.80  E-value=4.2e-08  Score=94.22  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=59.7

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CcHHHHHHh---cCCCeEEEEEcccCcC--HHHHHH-
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL---GNRKRILVLNREDMIS--MADRNA-  167 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~d~~l~~~L---~~kp~IlVlNK~Dl~~--~~~~~~-  167 (275)
                      -+.||| ..+.+.+...+..+|++|+|+|++++...       ...+...++   ..+++|+|+||+|+.+  ....++ 
T Consensus       116 iDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i  194 (483)
T 3p26_A          116 VDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEI  194 (483)
T ss_dssp             ECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred             EECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHH
Confidence            356888 56777888889999999999999886322       111222222   2357999999999986  222222 


Q ss_pred             ---HHHHHHHcC-----CeeEEecCccccchhh
Q 023932          168 ---WATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       168 ---~~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                         ...++.+.+     ..++++||++|.|+++
T Consensus       195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          195 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence               223333333     4689999999999974

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.79  E-value=1.4e-08  Score=81.24  Aligned_cols=103  Identities=9%  Similarity=-0.083  Sum_probs=68.6

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhc--CCCeEEEEEcccCcC
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      .+..||        .||+ ..........++.+|.+++|+|+.++.+...     ..+.....  +.|+++|+||+|+..
T Consensus        53 ~~~l~D--------~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           53 QIDILD--------TAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEEE--------CCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred             EEEEEE--------CCCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence            466666        4554 2334445567899999999999986532211     11222222  689999999999975


Q ss_pred             HH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          162 MA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       162 ~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ..  ..++...+....+..++++||++|.|++++.+.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T 1u8z_A          124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE  164 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            32  1234444455567789999999999999998887654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.79  E-value=1.9e-10  Score=94.95  Aligned_cols=84  Identities=11%  Similarity=0.052  Sum_probs=57.6

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEe
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS  182 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~i  182 (275)
                      ...++++|++|+|+|+.++.+..+  ..+..++     .+.|+++|+||+|+......++..+.+.     ..+..++.+
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  162 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC  162 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence            456789999999999987643221  1233333     3679999999999976322233333321     123578999


Q ss_pred             cCccccchhhHHHHHH
Q 023932          183 NGQLGMGTMKLSRLAK  198 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~  198 (275)
                      ||++|.|++++.+.|.
T Consensus       163 Sa~~g~gi~~l~~~l~  178 (181)
T 2h17_A          163 CALTGEGLCQGLEWMM  178 (181)
T ss_dssp             BTTTTBTHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHH
Confidence            9999999999988765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.78  E-value=2e-08  Score=96.54  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=74.6

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH----HHHHHHH
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN----AWATYFA  173 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~----~~~~~~~  173 (275)
                      +-+.||| ..+.+.+...+..+|++|+|+|++++......+...++.  +.|.++|+||+|+.+....+    +..+++.
T Consensus        77 iiDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~  155 (482)
T 1wb1_A           77 LVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ  155 (482)
T ss_dssp             ECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHh
Confidence            3457998 567788888899999999999999865443333333332  78899999999998754332    2333343


Q ss_pred             Hc----CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQ----GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +.    +..++++||++|.|+++|.+.|.+..+
T Consensus       156 ~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          156 STHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            43    357899999999999999998887543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.77  E-value=3.9e-09  Score=85.21  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=60.7

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEe
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS  182 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~i  182 (275)
                      ...++++|++|+|+|+.++.+..  ...+..++     .+.|+++|+||+|+.+.....++...+.     ..+..++++
T Consensus        69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (171)
T 1upt_A           69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT  148 (171)
T ss_dssp             GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence            44678999999999998764322  22333333     2679999999999976533333333332     224578999


Q ss_pred             cCccccchhhHHHHHHHHh
Q 023932          183 NGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~  201 (275)
                      ||++|.|++++.+.+.+..
T Consensus       149 Sa~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          149 SATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHH
Confidence            9999999999998877654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.77  E-value=2.9e-08  Score=83.93  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=68.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---------cCCCeEEEEEcccCcCHHH--HHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNREDMISMAD--RNAWAT  170 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---------~~kp~IlVlNK~Dl~~~~~--~~~~~~  170 (275)
                      +.||+ ..........++.+|++|+|+|+.++.+..  .+..|+         .+.|+++|+||+|+.....  .+...+
T Consensus        90 Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~  166 (217)
T 2f7s_A           90 DTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  166 (217)
T ss_dssp             EEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ECCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence            35776 455566677889999999999997653321  222332         2568999999999975321  223333


Q ss_pred             HHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       171 ~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +....+..++.+||+++.|++++.+.|.+...
T Consensus       167 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          167 LADKYGIPYFETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44456778999999999999999888766543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.77  E-value=3.1e-09  Score=87.06  Aligned_cols=98  Identities=16%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      .++.+|++++|+|+.++.+....     .+...+.  +.|+++|+||+|+....  ..++...+....+..++++||++|
T Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (181)
T 3t5g_A           74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN  153 (181)
T ss_dssp             GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSH
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCC
Confidence            56789999999999864322211     1122222  67999999999986432  123333445556788999999999


Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhH
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS  232 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKST  232 (275)
                      .|++++.+.+.+....                  .-|..++||||
T Consensus       154 ~~v~~l~~~l~~~~~~------------------~~~~~~~gkss  180 (181)
T 3t5g_A          154 QTAVDVFRRIILEAEK------------------MDGACSQGKSS  180 (181)
T ss_dssp             HHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred             CCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence            9999998887665432                  12668889886

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.76  E-value=1.5e-08  Score=82.21  Aligned_cols=97  Identities=12%  Similarity=0.017  Sum_probs=65.7

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+....  ..++..++..+
T Consensus        71 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  149 (179)
T 1z0f_A           71 TAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE  149 (179)
T ss_dssp             CTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            4554 23344556678999999999999875332221 111111     267899999999996432  12334445556


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+..++++||++|.|++++.+.+.+.
T Consensus       150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (179)
T 1z0f_A          150 NGLLFLEASAKTGENVEDAFLEAAKK  175 (179)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            67889999999999999998877654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.76  E-value=1.5e-08  Score=82.85  Aligned_cols=98  Identities=9%  Similarity=-0.096  Sum_probs=66.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~  173 (275)
                      .||+. .........++.+|++++|+|+.++.+...     ..+..+..  +.|+++|+||+|+....  ..++...+..
T Consensus        73 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  151 (187)
T 2a9k_A           73 TAGQE-DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE  151 (187)
T ss_dssp             CCCTT-CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             CCCCc-ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence            45542 233344567889999999999986532111     11222222  68999999999997532  2234445555


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +.+..++++||+++.|++++.+.|.+..
T Consensus       152 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (187)
T 2a9k_A          152 QWNVNYVETSAKTRANVDKVFFDLMREI  179 (187)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            6678899999999999999988876654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.76  E-value=8.8e-09  Score=83.95  Aligned_cols=105  Identities=10%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHH---Hh-cCCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQ---WL-GNRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~-l~~---~L-~~kp~IlVlNK~Dl~~~  162 (275)
                      .+..||        .||+ ..........++++|++|+|+|+.++.+..+ .. +..   .. .+.|+++|+||+|+...
T Consensus        61 ~~~~~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           61 KLQMWD--------TAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEEE--------CCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             EEEEEe--------CCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence            455666        4564 3334445566799999999999987543221 11 111   11 26799999999999753


Q ss_pred             H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .  ..+....+....+..++++||+++.|++++.+.+.+...
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2  122333344455778999999999999999888766543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.76  E-value=6.6e-09  Score=87.30  Aligned_cols=99  Identities=14%  Similarity=0.005  Sum_probs=63.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH-HHHHHHHHHHc
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD-RNAWATYFAKQ  175 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~  175 (275)
                      .||+. .........++.+|++|+|+|+.++.+..+ ..+...+    . +.|+++|+||+|+..... .+....+....
T Consensus        76 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  154 (213)
T 3cph_A           76 TAGQE-RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL  154 (213)
T ss_dssp             CTTGG-GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH
T ss_pred             CCCcH-HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc
Confidence            45542 222334567899999999999976532211 1111111    1 579999999999953211 12222333445


Q ss_pred             CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          176 GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       176 g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ++.++++||++|.|++++.+.|.+...
T Consensus       155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          155 GIPFIESSAKNDDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             TCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            778999999999999999888776544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.75  E-value=6.7e-09  Score=85.53  Aligned_cols=106  Identities=13%  Similarity=0.077  Sum_probs=70.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        .||+ ..........++++|++++|+|+.++.+..+  ..+...+.     +.|+++|+||+|+.
T Consensus        62 ~~~~~~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (186)
T 1ksh_A           62 FKLNIWD--------VGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP  132 (186)
T ss_dssp             EEEEEEE--------ECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence            4456666        4565 3333444556789999999999987643222  22333332     57999999999997


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .....++..+.+.     ..+..++.+||++|.|++++.+.+.+...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  179 (186)
T 1ksh_A          133 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS  179 (186)
T ss_dssp             TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            6533333333332     22457899999999999999988776554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.74  E-value=9.4e-09  Score=83.87  Aligned_cols=99  Identities=14%  Similarity=0.017  Sum_probs=65.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+. .........++.+|++|+|+|+.++.+... ..+...+     .+.|+++|+||+|+....+  .++..++...
T Consensus        68 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  146 (181)
T 2efe_B           68 TAGQE-RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE  146 (181)
T ss_dssp             CCCSG-GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCCh-hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence            45542 233334567889999999999976533211 1111111     1578999999999965321  2334444555


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+..++++||++|.|++++.+.|.+...
T Consensus       147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          147 NGLFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             TTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999988876554

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.74  E-value=7.5e-09  Score=83.14  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=67.9

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~  162 (275)
                      .+..||        .||+ ..........++.+|++|+|+|+.++.+..+  ..+..+.    .+.|+++|+||+|+...
T Consensus        56 ~~~~~D--------~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           56 KFEIWD--------TAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK  126 (170)
T ss_dssp             EEEEEE--------ECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEEe--------CCCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence            466666        3554 2233344567899999999999986532211  1111221    15688999999999653


Q ss_pred             H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .  ..++...+....+..++++||++|.|+++|.+.|.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2  12333344455677899999999999999998876644

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.74  E-value=3.2e-08  Score=94.21  Aligned_cols=90  Identities=10%  Similarity=0.109  Sum_probs=67.9

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHc-----CCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQ-----GTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~-----g~~vi~iS  183 (275)
                      .....++.+|++|+|+|+..+....+..+..++.  ++|+++|+||+|+....  ..++..+.+.+.     +..++++|
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  349 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS  349 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence            3445789999999999999887776666666654  78999999999997532  223344444332     35799999


Q ss_pred             CccccchhhHHHHHHHHhc
Q 023932          184 GQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~  202 (275)
                      |++|.|+++|.+.+.+...
T Consensus       350 A~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          350 ALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             TTTCTTGGGHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999888776543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.73  E-value=1.1e-08  Score=85.51  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=62.5

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+..  ...+..++.     +.|+++|+||+|+......+++.+.+.. 
T Consensus        80 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~  158 (192)
T 2b6h_A           80 VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ  158 (192)
T ss_dssp             CC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             CCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence            5665 233334456789999999999998763222  122333332     6799999999999764333333333221 


Q ss_pred             ----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 ----QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ----~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                          .+..++.+||++|.|++++.+.|.+..
T Consensus       159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          159 HLRSRTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence                234689999999999999988876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.72  E-value=1.8e-08  Score=80.52  Aligned_cols=89  Identities=15%  Similarity=-0.058  Sum_probs=60.9

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iS  183 (275)
                      .....++.+|.+++|+|+.++.+..+  .   .+.....  +.|+++|+||+|+.+..+  ......+..+.+..++++|
T Consensus        67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  146 (167)
T 1kao_A           67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS  146 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred             HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence            34456889999999999986532211  1   1222222  689999999999865322  2233334445577899999


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      |++|.|++++.+.|.+..
T Consensus       147 a~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          147 AKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999988876543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.70  E-value=8.9e-09  Score=93.02  Aligned_cols=102  Identities=13%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC-HHHHHHHHHHHHH-cCC-eeEEecCccccch
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT  190 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~-~~~~~~~~~~~~~-~g~-~vi~iSak~g~Gi  190 (275)
                      ..++.+|++++|+|+.. ++..+..+.+.+.  ++|+++|+||+|+.. .....+....+.+ .+. .++++||+++.|+
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence            44678999999999987 6655556666665  789999999999987 4444455555544 344 6899999999999


Q ss_pred             hhHHHHHHHHhchhhhhhhcCCCCCcce
Q 023932          191 MKLSRLAKALASDVNVKRRSKGLLPRAV  218 (275)
Q Consensus       191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~  218 (275)
                      ++|.+.+...+++....+++...++.+.
T Consensus       163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~  190 (301)
T 1ega_A          163 DTIAAIVRKHLPEATHHFPEDYITDRSQ  190 (301)
T ss_dssp             HHHHHHHHTTCCBCCCSSCTTCCSCCSH
T ss_pred             HHHHHHHHHhCCcCCCCCCccccCCCCH
Confidence            9999998877665554555444444443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.70  E-value=1.7e-08  Score=81.95  Aligned_cols=89  Identities=16%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa  184 (275)
                      .....++++|++|+|+|+.++.+...  ..+..+.    .+.|+++|+||+|+....+  .++........+..++.+||
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  158 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA  158 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence            34467889999999999976532211  1111111    2678999999999975422  23334445556788999999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|++++.+.|.+..
T Consensus       159 ~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          159 KAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             TTTBSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998877654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.70  E-value=5.3e-08  Score=91.44  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHH---HHHHhcCCCeEEEEEcccCcCHHHH----HHHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL---MDQWLGNRKRILVLNREDMISMADR----NAWATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~~~----~~~~~~~~  173 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++++. .....+   +...+..+|+++|+||+|+.+....    +++.+++.
T Consensus        89 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  167 (410)
T 1kk1_A           89 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE  167 (410)
T ss_dssp             ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ECCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence            36898 556677777788899999999999764 222111   2222334688999999999876432    23333333


Q ss_pred             H---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 K---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .   .+..++++||++|.|+++|.+.|.+..+
T Consensus       168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          168 GTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            2   2467999999999999999999887544

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.69  E-value=2.6e-08  Score=82.31  Aligned_cols=105  Identities=14%  Similarity=0.131  Sum_probs=68.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~  160 (275)
                      ..+..||+        ||+ .........+++.+|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+.
T Consensus        60 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (181)
T 1fzq_A           60 FKLNVWDI--------GGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL  130 (181)
T ss_dssp             EEEEEEEC--------SSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred             EEEEEEEC--------CCC-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence            45666763        444 2233344567899999999999987533221  2233333     267999999999997


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .....++..+.+.     ..+..++++||++|.|++++.+.+.+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence            5433333333221     1234689999999999999998876654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.69  E-value=2.8e-08  Score=82.79  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=64.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+..+. .+...+    . +.|+++|+||+|+....+  .++...+..+
T Consensus        82 t~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~  160 (192)
T 2il1_A           82 TAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ  160 (192)
T ss_dssp             ECCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred             CCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence            4564 23344456678999999999999875433221 111111    1 679999999999975321  1222233333


Q ss_pred             c-CCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 Q-GTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~-g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      . +..++.+||++|.|++++.+.|.+..
T Consensus       161 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          161 ITGMRFCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             STTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2 57899999999999999988876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.68  E-value=3.2e-08  Score=83.18  Aligned_cols=98  Identities=9%  Similarity=-0.009  Sum_probs=65.7

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+..+  ..+..+.    .+.|+++|+||+|+....  ..++..++...
T Consensus        85 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  163 (201)
T 2hup_A           85 TAGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH  163 (201)
T ss_dssp             CTTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            4665 2334445567899999999999876533211  1111111    257899999999997531  12333444555


Q ss_pred             cCC-eeEEecCccccchhhHHHHHHHHh
Q 023932          175 QGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+. .++.+||++|.|++++.+.|.+..
T Consensus       164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          164 YDILCAIETSAKDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             TTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            677 899999999999999988876554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.68  E-value=1.6e-08  Score=81.41  Aligned_cols=105  Identities=10%  Similarity=0.003  Sum_probs=68.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~  161 (275)
                      ..+..||+        ||+ ..........++.+|++|+|+|+.++.+..+ ..+...+     .+.|+++|+||+|+.+
T Consensus        55 ~~~~~~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~  125 (170)
T 1z0j_A           55 HKFLIWDT--------AGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD  125 (170)
T ss_dssp             EEEEEEEE--------CCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred             EEEEEEcC--------CCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence            45667763        444 2233344567899999999999987543222 1121222     1568999999999975


Q ss_pred             HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+  .+....+....+..++++||++|.|+++|.+.|.+..
T Consensus       126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            322  1223333445567899999999999999988876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.68  E-value=3.6e-08  Score=79.23  Aligned_cols=105  Identities=12%  Similarity=0.006  Sum_probs=67.8

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHH---HHHh---cCCCeEEEEEcccCc
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLM---DQWL---GNRKRILVLNREDMI  160 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l---~~~L---~~kp~IlVlNK~Dl~  160 (275)
                      .+..||+        ||+. .........++.+|++++|+|+.++.+..  ...+   .+..   .+.|+++|+||+|+.
T Consensus        52 ~~~~~Dt--------~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~  122 (172)
T 2erx_A           52 TLQITDT--------TGSH-QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES  122 (172)
T ss_dssp             EEEEEEC--------CSCS-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred             EEEEEEC--------CCch-hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence            4667763        4432 12233445678899999999998653221  1111   1111   268999999999997


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +..+  ...........+..++++||++|.|++++.+.|.+...
T Consensus       123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            5422  12222333445678999999999999999998877653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.68  E-value=7.1e-08  Score=88.93  Aligned_cols=87  Identities=11%  Similarity=0.053  Sum_probs=62.8

Q ss_pred             HHhhcCeEEEEEeCCCCCCCC-c--HHHHH-Hh---cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTT-H--PLMDQ-WL---GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~-d--~~l~~-~L---~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      ....+|.+|+|+|+..+.... +  ..+.. ..   .++|+++|+||+|+....+.++..+.+...+..++++||++|.|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            345699999999987653211 1  11222 11   27899999999999877665555555555667899999999999


Q ss_pred             hhhHHHHHHHHhch
Q 023932          190 TMKLSRLAKALASD  203 (275)
Q Consensus       190 i~~L~~~i~~l~~~  203 (275)
                      +++|.+.|.+....
T Consensus       323 i~~l~~~i~~~l~~  336 (357)
T 2e87_A          323 IDLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988776543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.68  E-value=4.3e-08  Score=94.31  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      +.....++++|++|+|+|+.++.+..+..+.+.+.++|+++|+||+|+......++..+++ ..+..++++||++|.|++
T Consensus       315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~  393 (482)
T 1xzp_A          315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE  393 (482)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred             HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence            4556788999999999999887665556666667789999999999997532222322222 233578999999999999


Q ss_pred             hHHHHHHHHh
Q 023932          192 KLSRLAKALA  201 (275)
Q Consensus       192 ~L~~~i~~l~  201 (275)
                      +|.+.|.+..
T Consensus       394 eL~~~l~~~~  403 (482)
T 1xzp_A          394 KLEESIYRET  403 (482)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9998887653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.68  E-value=5.3e-08  Score=80.77  Aligned_cols=98  Identities=12%  Similarity=-0.031  Sum_probs=66.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++|+|+|+.++.+... ..+...+     .+.|+++|+||+|+....  ..++.......
T Consensus        79 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  157 (191)
T 3dz8_A           79 TAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ  157 (191)
T ss_dssp             HHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            5675 4445556678899999999999976432211 1122222     267999999999986432  11223333445


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+..++.+||++|.|++++.+.|.+..
T Consensus       158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (191)
T 3dz8_A          158 LGFDFFEASAKENISVRQAFERLVDAI  184 (191)
T ss_dssp             HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999999988776544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.67  E-value=3e-08  Score=79.49  Aligned_cols=87  Identities=10%  Similarity=-0.084  Sum_probs=59.2

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHc-CCeeEEec
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-GTKVIFSN  183 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~-g~~vi~iS  183 (275)
                      ....++++|++++|+|+.++.+..+  ..   +....  .+.|+++|+||+|+.....  .++...+..+. +..++++|
T Consensus        68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (167)
T 1c1y_A           68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS  147 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEec
Confidence            3456788999999999986532211  11   22222  2689999999999975321  22333334444 57899999


Q ss_pred             CccccchhhHHHHHHHH
Q 023932          184 GQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l  200 (275)
                      |++|.|++++.+.|.+.
T Consensus       148 a~~~~gi~~l~~~l~~~  164 (167)
T 1c1y_A          148 AKSKINVNEIFYDLVRQ  164 (167)
T ss_dssp             TTTTBSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999998887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.67  E-value=1.3e-07  Score=89.48  Aligned_cols=118  Identities=21%  Similarity=0.311  Sum_probs=82.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHH----c-CCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK----Q-GTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~----~-g~~vi~iSak  185 (275)
                      ...++.+|++++|+|+..+.+..+..+..++.  ++++++|+||+|+.....  .+++.+.+.+    . +..++++||+
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  337 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD  337 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence            45778999999999998877665555555553  789999999999976432  2333333322    1 3578999999


Q ss_pred             cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      +|.|+++|.+.+.+......            .++         +|+.+|.++++... ..+.|   |....
T Consensus       338 ~g~gv~~l~~~i~~~~~~~~------------~~i---------~t~~ln~~l~~~~~-~~~~~---~~~ki  384 (439)
T 1mky_A          338 KGWNIDRMIDAMNLAYASYT------------TKV---------PSSAINSALQKVLA-FTNLP---RGLKI  384 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHHHT------------CCC---------CHHHHHHHHHHHHT-TCCCS---TTCCE
T ss_pred             CCCCHHHHHHHHHHHHHhhc------------ccC---------CHHHHHHHHHHHHH-cCCCC---CCcEE
Confidence            99999999988876654321            122         89999999976544 55555   55543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.67  E-value=2.3e-08  Score=82.47  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=69.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HHHHh--cCCCeEEEEEcccCcCH-
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL--GNRKRILVLNREDMISM-  162 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~-l~~~L--~~kp~IlVlNK~Dl~~~-  162 (275)
                      ..+..||+        ||+ ..........++.+|++|+|+|+.++.+..+. . +..+.  .+.|+++|+||+|+... 
T Consensus        93 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~  163 (208)
T 3clv_A           93 IKFDIWDT--------AGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ  163 (208)
T ss_dssp             EEEEEEEC--------TTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred             eEEEEEEC--------CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence            45677773        554 22333455678999999999999876332221 1 11111  25899999999994221 


Q ss_pred             HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ...++..+++.+.+..++++||++|.|++++.+.|.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            123445555666678899999999999999988876544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.67  E-value=2.7e-08  Score=81.49  Aligned_cols=88  Identities=15%  Similarity=0.057  Sum_probs=60.0

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ....++++|++|+|+|+.++.+...  ..   +....  .+.|+++|+||+|+....  ..++...+..+.+..++++||
T Consensus        83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  162 (183)
T 3kkq_A           83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA  162 (183)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence            3456789999999999987532211  11   11222  267999999999986521  122333444455678999999


Q ss_pred             c-cccchhhHHHHHHHHh
Q 023932          185 Q-LGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k-~g~Gi~~L~~~i~~l~  201 (275)
                      + ++.|++++.+.|.+..
T Consensus       163 ~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          163 KDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             SSSCBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            9 9999999988876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.66  E-value=2.9e-07  Score=78.82  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=60.4

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHhc----CCCeEEEEEcccCcCHHHH----H-HHHHHHHHcC--Cee
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLG----NRKRILVLNREDMISMADR----N-AWATYFAKQG--TKV  179 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~---~l~~~L~----~kp~IlVlNK~Dl~~~~~~----~-~~~~~~~~~g--~~v  179 (275)
                      +......+|++|+|+|+.++.+....   .+...+.    +.|+++|+||+|+....+.    . ....+....+  ..+
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            34456888999999999887554322   2222222    6899999999999764321    1 2223333344  689


Q ss_pred             EEecCccccchhhHHHHHHHHhc
Q 023932          180 IFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +++||++|.|++++.+.|.+...
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHH
Confidence            99999999999999888776543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.66  E-value=2.3e-08  Score=80.26  Aligned_cols=104  Identities=11%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hcCCCeEEEEEcccCcCH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LGNRKRILVLNREDMISM  162 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L~~kp~IlVlNK~Dl~~~  162 (275)
                      ..+..||        .||+. .........++.+|++++|+|+.++.+..+  ..+..+   ..+.|+++|+||+|+...
T Consensus        54 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           54 VRLMLWD--------TAGQE-EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD  124 (168)
T ss_dssp             EEEEEEC--------CTTGG-GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred             EEEEEEc--------CCCcH-hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence            3566666        35532 222234457789999999999987532211  111111   237899999999999753


Q ss_pred             H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .  ..++...+..+.+..++++||+++.|++++.+.|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  164 (168)
T 1z2a_A          125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  164 (168)
T ss_dssp             CSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            2  1233334445567889999999999999998887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.66  E-value=4.8e-08  Score=81.40  Aligned_cols=99  Identities=9%  Similarity=-0.087  Sum_probs=66.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~  173 (275)
                      .||+ ..........++.+|++++|+|+.++.+...  .   .+..+..  +.|+++|+||+|+....  ..++...+..
T Consensus        69 t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  147 (206)
T 2bov_A           69 TAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE  147 (206)
T ss_dssp             CCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH
Confidence            4554 2233344567889999999999986532211  1   1222222  68999999999997532  2234444555


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+..++++||++|.|++++.+.|.+...
T Consensus       148 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          148 QWNVNYVETSAKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             HHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            56778999999999999999888765543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.65  E-value=4.8e-08  Score=80.01  Aligned_cols=100  Identities=11%  Similarity=-0.017  Sum_probs=64.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++++|+|+.++.+..+  ..   +..+..  +.|+++|+||+|+..... .+........
T Consensus        59 t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~  137 (189)
T 4dsu_A           59 TAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS  137 (189)
T ss_dssp             CCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH
Confidence            3554 2233344457789999999999986532211  11   111121  679999999999975332 1222233344


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      .+..++++||++|.|++++.+.|.+....
T Consensus       138 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          138 YGIPFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999998887765543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.65  E-value=5.5e-08  Score=81.32  Aligned_cols=98  Identities=13%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--------HHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--------RNAW  168 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--------~~~~  168 (275)
                      .||+ ..........++.+|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+.....        .+..
T Consensus        84 t~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~  162 (199)
T 2p5s_A           84 TAGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG  162 (199)
T ss_dssp             CTTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred             CCCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence            4554 23334455678999999999999765332221 111112     1689999999999963211        1222


Q ss_pred             HHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       169 ~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+..+.+..++++||++|.|++++.+.|.+..
T Consensus       163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            233444577899999999999999988776543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.65  E-value=1.9e-08  Score=80.73  Aligned_cols=103  Identities=13%  Similarity=0.074  Sum_probs=66.7

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HHHHh----cCCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~-l~~~L----~~kp~IlVlNK~Dl~~~  162 (275)
                      .+..||        .||+. .........++++|++|+|+|+.++.+..+. . +..+.    .+.|+++|+||+|+...
T Consensus        53 ~~~~~D--------~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           53 KFEIWD--------TAGQE-RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEEEEE--------ECCSG-GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred             EEEEEE--------CCCCh-hhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence            466776        34542 2233445678999999999999875332211 1 11111    26789999999999753


Q ss_pred             ---H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          163 ---A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       163 ---~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                         .  ..+.........+..++++||++|.|++++.+.|.+.
T Consensus       124 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (170)
T 1ek0_A          124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence               1  1122223344457789999999999999998887643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.65  E-value=1.9e-08  Score=81.73  Aligned_cols=89  Identities=13%  Similarity=0.037  Sum_probs=60.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ....++.+|++++|+|+.++.+...  ..+..+   .  .+.|+++|+||+|+....+  .+....+....+..++++||
T Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  153 (181)
T 2fn4_A           74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  153 (181)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence            3456788999999999986432211  111122   1  2679999999999975321  12233334455778999999


Q ss_pred             ccccchhhHHHHHHHHhc
Q 023932          185 QLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~  202 (275)
                      ++|.|++++.+.|.+...
T Consensus       154 ~~~~gv~~l~~~l~~~~~  171 (181)
T 2fn4_A          154 KLRLNVDEAFEQLVRAVR  171 (181)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999888776543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.65  E-value=3.1e-08  Score=81.35  Aligned_cols=40  Identities=38%  Similarity=0.490  Sum_probs=36.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..+++++|.+|||||||+|+|.+.....+++.||+|++..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~   43 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL   43 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceecee
Confidence            5789999999999999999999887667899999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.64  E-value=2.5e-08  Score=82.94  Aligned_cols=89  Identities=12%  Similarity=0.056  Sum_probs=63.3

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEE
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIF  181 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~  181 (275)
                      ......++.+|++|+|+|+.++.+..  .+..|+        .+.|+++|+||+|+....  ..++..++..+.+..+++
T Consensus        87 ~~~~~~~~~~d~iilV~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  164 (192)
T 2fg5_A           87 SLAPMYYRGSAAAVIVYDITKQDSFY--TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE  164 (192)
T ss_dssp             GGTHHHHTTCSEEEEEEETTCTHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred             hhhHHhhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence            33456789999999999998753322  122221        167999999999997422  223444455556788999


Q ss_pred             ecCccccchhhHHHHHHHHhc
Q 023932          182 SNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +||++|.|+++|.+.|.+...
T Consensus       165 ~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          165 TSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             CBTTTTBSHHHHHHHHHHTCC
T ss_pred             EeCCCCcCHHHHHHHHHHHHH
Confidence            999999999999998876654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.64  E-value=3e-08  Score=82.86  Aligned_cols=84  Identities=8%  Similarity=-0.052  Sum_probs=55.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHHHH----H----HHHHHHHH-----
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR----N----AWATYFAK-----  174 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~----~----~~~~~~~~-----  174 (275)
                      ..+++++|++|+|+|+.+........+..++       .+.|+++|+||+|+.+....    .    .....+.+     
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            4577899999999999876222222333332       26799999999999764321    1    11122222     


Q ss_pred             cCCeeEEecCccccchhhHHHHHHH
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+..++.+||++ .|++++.+.+.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~  193 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQ  193 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHH
T ss_pred             CCcceEEEEech-hhHHHHHHHHHH
Confidence            346789999999 999988876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.64  E-value=3.7e-08  Score=80.01  Aligned_cols=89  Identities=16%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-------cCCC-eEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEe
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-------GNRK-RILVLNREDMISMAD--RNAWATYFAKQGTKVIFS  182 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-------~~kp-~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~i  182 (275)
                      ....++++|++|+|+|+.++.+..+. .+...+       .+.| +++|+||+|+.....  .+....+....+..++++
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 2hxs_A           73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV  152 (178)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEE
T ss_pred             hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEE
Confidence            44568999999999999875432211 111111       1456 789999999975321  223333444567889999


Q ss_pred             cCccccchhhHHHHHHHHhc
Q 023932          183 NGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~~  202 (275)
                      ||++|.|++++.+.|.+...
T Consensus       153 Sa~~~~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          153 SAKTGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999988766543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.64  E-value=6.5e-09  Score=100.06  Aligned_cols=55  Identities=38%  Similarity=0.487  Sum_probs=46.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC  270 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~  270 (275)
                      .+++|+|+|.||||||||+|+|++.++..++++||||+|.....      .+.+.+++|..
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~  302 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR  302 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence            35799999999999999999999988889999999999985443      35667777765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.64  E-value=2.4e-08  Score=90.38  Aligned_cols=53  Identities=38%  Similarity=0.483  Sum_probs=43.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC  270 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~  270 (275)
                      .+|+++|.||||||||+|+|++.+...+++.|+|||+.....      .+.+.+++|..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~   66 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH   66 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCcccc
Confidence            469999999999999999999998888999999999864311      34566777754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.63  E-value=2.9e-08  Score=82.11  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=65.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++|+|+|+.++.+... ..+...+    . +.|+++|+||+|+.+...  ......+...
T Consensus        72 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  150 (196)
T 3tkl_A           72 TAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS  150 (196)
T ss_dssp             ECCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            4554 2233344567899999999999987532211 1111111    1 679999999999975421  1233334445


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+..++++||++|.|++++.+.|.+...
T Consensus       151 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  178 (196)
T 3tkl_A          151 LGIPFLETSAKNATNVEQSFMTMAAEIK  178 (196)
T ss_dssp             TTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999887766543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.63  E-value=3.3e-08  Score=82.34  Aligned_cols=98  Identities=11%  Similarity=-0.014  Sum_probs=57.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccCcC-HHH--HHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMIS-MAD--RNAWAT  170 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl~~-~~~--~~~~~~  170 (275)
                      .||+ ..........++.+|++|+|+|+.++.+..+ ..+...+        .+.|+++|+||+|+.. ...  .++..+
T Consensus        80 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~  158 (208)
T 2yc2_C           80 TAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD  158 (208)
T ss_dssp             TTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH
Confidence            5676 3344445566789999999999987543211 1111111        3678999999999976 321  234444


Q ss_pred             HHHHcCCeeEEecCcc-ccchhhHHHHHHHHh
Q 023932          171 YFAKQGTKVIFSNGQL-GMGTMKLSRLAKALA  201 (275)
Q Consensus       171 ~~~~~g~~vi~iSak~-g~Gi~~L~~~i~~l~  201 (275)
                      +..+.+..++.+||++ |.|++++.+.|.+..
T Consensus       159 ~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          159 WATTNTLDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             HHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred             HHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence            5556678899999999 999999988876644

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.63  E-value=3.9e-08  Score=91.35  Aligned_cols=153  Identities=14%  Similarity=0.041  Sum_probs=88.6

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc----------CccEEEEeCCCccccccchhHHHHHHHHHHH
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL----------DADLYYWTKSLRPVQWYPGHIAKTEKELKDQ  117 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~  117 (275)
                      .-+.+.+||+.+  -+|+++.+.........+...+..+          ...+..||+ .+.++..|.++....+.+.+.
T Consensus       178 ~~~~V~lvG~~n--aGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT-~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTN--SGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDT-VGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             -CCEEEEECBTT--SSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEEC-CCBCSSCCGGGHHHHHHHHHG
T ss_pred             CCcEEEEECCCC--CCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeC-CCchhcCCHHHHHHHHHHHHH
Confidence            345688999933  2366665433222211111111111          134556653 445566666655556667778


Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHH------HHHHh--cCCCeEEEEEcccCcCHHH--HHHHH-HHHHHc---CCeeEEec
Q 023932          118 LKLMDVVIEVRDARIPLSTTHPL------MDQWL--GNRKRILVLNREDMISMAD--RNAWA-TYFAKQ---GTKVIFSN  183 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~~------l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~-~~~~~~---g~~vi~iS  183 (275)
                      +..+|++++|+|+.++.......      +...+  .++|+++|+||+|+.+...  ..... ......   ...++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            89999999999997763111111      12222  3689999999999976421  11111 111222   23678999


Q ss_pred             CccccchhhHHHHHHHHhch
Q 023932          184 GQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~~  203 (275)
                      |+++.|+++|.+.|.++...
T Consensus       335 A~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhcc
Confidence            99999999999998876654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.62  E-value=2.2e-08  Score=80.55  Aligned_cols=89  Identities=15%  Similarity=0.005  Sum_probs=60.2

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH-HHHHHHHHHHHcCCeeEEecCcc
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ....++++|++|+|+|+.++.+..+ ..+...+     .+.|+++|+||+|+.... ..+....+..+.+..++++||++
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (170)
T 1g16_A           69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN  148 (170)
T ss_dssp             CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence            4457789999999999986533211 1111111     167999999999995321 12233334445577899999999


Q ss_pred             ccchhhHHHHHHHHhc
Q 023932          187 GMGTMKLSRLAKALAS  202 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~  202 (275)
                      |.|++++.+.|.+...
T Consensus       149 ~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888776543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.62  E-value=3.2e-08  Score=92.96  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=62.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHH---HHHHhcCCCeEEEEEcccCcCHHH----HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~  174 (275)
                      .||| ..+.+.+...+..+|++|+|+|++++. .....+   +...+..+|+++|+||+|+.+...    .++..+++.+
T Consensus        88 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~  166 (408)
T 1s0u_A           88 SPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG  166 (408)
T ss_dssp             CSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred             CCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence            6888 456666666677889999999999764 221111   222233468999999999976432    2333344433


Q ss_pred             ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                         .+..++++||++|.|+++|.+.|.+..+
T Consensus       167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          167 TIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence               2467999999999999999999887543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.62  E-value=8.6e-08  Score=77.17  Aligned_cols=86  Identities=17%  Similarity=0.014  Sum_probs=59.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ..++.+|++++|+|+.++.+..  ...+..+..     +.|+++|+||+|+.+..  ..+....+....+..++++||++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T 3q85_A           71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  150 (169)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence            3568899999999997643221  122222222     67999999999997432  12233344455677899999999


Q ss_pred             ccchhhHHHHHHHHh
Q 023932          187 GMGTMKLSRLAKALA  201 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~  201 (275)
                      |.|++++.+.+.+..
T Consensus       151 ~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          151 HHNTRELFEGAVRQI  165 (169)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=82.85  Aligned_cols=86  Identities=17%  Similarity=0.171  Sum_probs=60.6

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ..+..+|++|+|+|+.++.+..  .+..|+       .+.|+++|+||+|+....  .......+....+..++.+||++
T Consensus        77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (181)
T 3tw8_B           77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKE  154 (181)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCC
Confidence            4568899999999998753222  122222       257999999999987542  12233344445577899999999


Q ss_pred             ccchhhHHHHHHHHhch
Q 023932          187 GMGTMKLSRLAKALASD  203 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~  203 (275)
                      |.|++++.+.|.+....
T Consensus       155 ~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          155 NVNVEEMFNCITELVLR  171 (181)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999887765543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.61  E-value=9.7e-08  Score=81.01  Aligned_cols=98  Identities=12%  Similarity=-0.028  Sum_probs=56.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHHH-----------
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR-----------  165 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~~-----------  165 (275)
                      .||+ ..........++++|++|+|+|+.++.+....  .+...    ..+.|+++|+||+|+......           
T Consensus        89 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  167 (214)
T 2j1l_A           89 TAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP  167 (214)
T ss_dssp             C----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCC
T ss_pred             CCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCc
Confidence            4664 23334444568899999999999865332211  12222    236899999999999764322           


Q ss_pred             ---HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932          166 ---NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       166 ---~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                         ++...+..+.+. .++++||++|.|++++.+.|.+..
T Consensus       168 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence               122233344565 899999999999999988876654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.61  E-value=7.8e-08  Score=77.18  Aligned_cols=104  Identities=14%  Similarity=-0.009  Sum_probs=59.4

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcC
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMIS  161 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~  161 (275)
                      .+..||        .||+ ..........++.+|++++|+|..++.+...  ..+..+.     .+.|+++|+||+|+.+
T Consensus        50 ~~~i~D--------~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  120 (166)
T 3q72_A           50 SLMVYD--------IWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR  120 (166)
T ss_dssp             EEEEEE--------CC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred             EEEEEE--------CCCC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence            455666        3554 2333344456799999999999986532211  1111221     1579999999999975


Q ss_pred             HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+  .+.........+..++++||++|.|++++.+.+.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI  162 (166)
T ss_dssp             SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence            321  1222233444567899999999999999988876654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.61  E-value=2.6e-08  Score=80.22  Aligned_cols=102  Identities=16%  Similarity=0.087  Sum_probs=65.0

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI  160 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~  160 (275)
                      .+..||        .||+ ..........++++|++|+|+|+.++.+..  .+..|+        .+.|+++|+||+|+.
T Consensus        56 ~l~i~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~  124 (170)
T 1z08_A           56 NLAIWD--------TAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLE  124 (170)
T ss_dssp             EEEEEE--------CCCC--------CCSSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred             EEEEEE--------CCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence            466666        4554 222233334568999999999987653221  122221        267899999999997


Q ss_pred             CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +..  ..++..++..+.+..++++||++|.|++++.+.|.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            532  12333344455678899999999999999988876543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.61  E-value=1.1e-08  Score=83.76  Aligned_cols=88  Identities=11%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEEe
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFS  182 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~i  182 (275)
                      ...++++|++++|+|+.++.+..+  ..+..++     .+.|+++|+||+|+......++..+.+..     .+..++++
T Consensus        80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  159 (183)
T 1moz_A           80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS  159 (183)
T ss_dssp             GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence            446789999999999987633221  2233333     25799999999999764333333333321     12468999


Q ss_pred             cCccccchhhHHHHHHHHhc
Q 023932          183 NGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~~  202 (275)
                      ||++|.|++++.+.|.+...
T Consensus       160 Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          160 SAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             BGGGTBTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHH
Confidence            99999999999988776543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.61  E-value=4.8e-08  Score=81.55  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=68.2

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISM  162 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~  162 (275)
                      .+..||        .||+ ..........++++|++|+|+|+.++.+... ..+...+     .+.|+++|+||+|+...
T Consensus        58 ~~~l~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           58 KLQIWD--------TAGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             EEEEEE--------ECCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred             EEEEEE--------CCCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence            456666        4554 2333445567899999999999976532211 1111111     26799999999999753


Q ss_pred             H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .  ..+....+....+..++.+||++|.|++++.+.|.+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  169 (203)
T 1zbd_A          129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI  169 (203)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            2  12233333445578899999999999999988776544

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.61  E-value=1.1e-09  Score=91.78  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=49.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-c----CCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-G----NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~---L-~----~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak  185 (275)
                      ..++++|++|+|+|+.++.+..  .+..|   + .    +.|+++|+||+|+.+....  +....+....+..++++||+
T Consensus       101 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~  178 (199)
T 3l0i_B          101 SYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK  178 (199)
T ss_dssp             C--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC-
T ss_pred             HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECC
Confidence            3568899999999998753321  22222   2 1    5799999999999754211  11223334456789999999


Q ss_pred             cccchhhHHHHHHHH
Q 023932          186 LGMGTMKLSRLAKAL  200 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l  200 (275)
                      +|.|++++.+.|.+.
T Consensus       179 ~g~gv~~l~~~l~~~  193 (199)
T 3l0i_B          179 NATNVEQSFMTMAAE  193 (199)
T ss_dssp             --HHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998876543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.61  E-value=1.8e-08  Score=84.59  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=57.1

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-------------
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-------------  174 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-------------  174 (275)
                      ..+++.+|++++|+|+.++.+..  ...+..++     .+.|+++|+||+|+......++..+.+..             
T Consensus        87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (198)
T 1f6b_A           87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK  166 (198)
T ss_dssp             GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccc
Confidence            34678999999999998753222  12233333     26799999999999752222233333321             


Q ss_pred             ----cCCeeEEecCccccchhhHHHHHHH
Q 023932          175 ----QGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ----~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                          .+..++++||++|.|++++.++|.+
T Consensus       167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             TCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             cccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence                2346899999999999999888654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.60  E-value=6.1e-08  Score=91.81  Aligned_cols=143  Identities=11%  Similarity=0.078  Sum_probs=87.4

Q ss_pred             CCCeeeEecCCCCCCCCCCCCCCCCcchhh-HHhhcccccCc-----------cEEEEeCCCccccccchhHH------H
Q 023932           48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAY-EEECDWADLDA-----------DLYYWTKSLRPVQWYPGHIA------K  109 (275)
Q Consensus        48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------d~~~~~~~~~~i~~~pG~~~------~  109 (275)
                      ....|.++|..+  -+|+++-++.....-. .....-...+.           .+..||+        ||+..      .
T Consensus        33 ~~~kI~IvG~~~--vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT--------pG~~d~~~l~~~  102 (423)
T 3qq5_A           33 FRRYIVVAGRRN--VGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT--------PGLDDVGELGRL  102 (423)
T ss_dssp             CCEEEEEECSCS--TTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEEC--------SSTTCCCTTCCC
T ss_pred             CCEEEEEECCCC--CCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEEC--------cCCCcccchhHH
Confidence            445788889822  2488888776543321 11111111111           4555653        44421      1


Q ss_pred             HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH-HcCCeeEEecCcc
Q 023932          110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQL  186 (275)
Q Consensus       110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~-~~g~~vi~iSak~  186 (275)
                      ..++....+..+|++|+|+|+  ........+..++.  +.|+++|+||+|+...... +..+.+. +.+..++++||++
T Consensus       103 ~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAkt  179 (423)
T 3qq5_A          103 RVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQ  179 (423)
T ss_dssp             CHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCC
T ss_pred             HHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCC
Confidence            234566788999999999998  33333344444443  7899999999999765432 2222222 3457899999999


Q ss_pred             ccchhhHHHHHHHHhch
Q 023932          187 GMGTMKLSRLAKALASD  203 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~  203 (275)
                      |.|+++|.+.|.+...+
T Consensus       180 g~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          180 KKGFDDIGKTISEILPG  196 (423)
T ss_dssp             TTSTTTHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999998877643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.60  E-value=1.2e-07  Score=78.44  Aligned_cols=99  Identities=13%  Similarity=0.034  Sum_probs=65.0

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---cCCCeEEEEEcccCcCHH-HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMA-DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~---l~~~L---~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~  173 (275)
                      .||+. .........++.+|++|+|+|+.++.+..  ...   +....   .+.|+++|+||+|+.... ..+.......
T Consensus        63 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~  141 (199)
T 2gf0_A           63 TTGSH-QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ  141 (199)
T ss_dssp             CCGGG-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred             CCChH-HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH
Confidence            45542 22334445778999999999997643211  111   11211   257999999999997532 1222333344


Q ss_pred             HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+..++.+||++|.|+++|.+.|.+...
T Consensus       142 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          142 EWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            55778999999999999999998877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.60  E-value=3.1e-08  Score=81.17  Aligned_cols=97  Identities=9%  Similarity=0.063  Sum_probs=56.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~  172 (275)
                      .||+ ..........++++|++|+|+|+.++.+..  .+..|+        .+.|+++|+||+|+....  ..+....+.
T Consensus        64 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  140 (183)
T 2fu5_C           64 TAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA  140 (183)
T ss_dssp             C----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred             CCCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence            4665 223333345678999999999998753321  222222        157999999999997531  122333444


Q ss_pred             HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+.+..++.+||++|.|++++.+.|.+...
T Consensus       141 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          141 LDYGIKFMETSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             HHHTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999888765543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.60  E-value=1.6e-08  Score=97.10  Aligned_cols=56  Identities=32%  Similarity=0.358  Sum_probs=26.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      .+++|+|+|.||||||||+|+|++.+...+++.||||+|.....      .+.+.+++|...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~  293 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE  293 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence            46889999999999999999999988889999999999985433      356677777654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.60  E-value=1.1e-07  Score=89.23  Aligned_cols=100  Identities=16%  Similarity=0.067  Sum_probs=68.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcC-HHHHH----HHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMIS-MADRN----AWATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~-~~~~~----~~~~~~~  173 (275)
                      +.|||. .+.+.+...+..+|++|+|+|++++...........+.  +.| +++|+||+|+.. ....+    +..+++.
T Consensus        81 DtpG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  159 (405)
T 2c78_A           81 DCPGHA-DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  159 (405)
T ss_dssp             ECCCSG-GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             ECCChH-HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence            368884 46677778889999999999999876544333333333  677 789999999984 32111    2333444


Q ss_pred             HcC-----CeeEEecCccccc------------------hhhHHHHHHHHhc
Q 023932          174 KQG-----TKVIFSNGQLGMG------------------TMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g-----~~vi~iSak~g~G------------------i~~L~~~i~~l~~  202 (275)
                      +.+     ..++++||++|.|                  +.+|.+.|.++.+
T Consensus       160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            444     4689999999987                  6677777666443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.60  E-value=2.9e-08  Score=82.34  Aligned_cols=88  Identities=13%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ....++++|++|+|+|+.++.+..+ ..+...+     .+.|+++|+||+|+.+...  .++...+..+.+..++.+||+
T Consensus        87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  166 (191)
T 2a5j_A           87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK  166 (191)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            4457889999999999976532221 1111111     1678999999999965321  223334444567889999999


Q ss_pred             cccchhhHHHHHHHHh
Q 023932          186 LGMGTMKLSRLAKALA  201 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~  201 (275)
                      +|.|++++.+.|.+..
T Consensus       167 ~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          167 TACNVEEAFINTAKEI  182 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988776543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.60  E-value=1.9e-08  Score=82.03  Aligned_cols=85  Identities=13%  Similarity=-0.107  Sum_probs=58.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH------------HHHHHHHHHcCC
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR------------NAWATYFAKQGT  177 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~------------~~~~~~~~~~g~  177 (275)
                      ..++++|++++|+|+.++.+..+.  .+...+    .+.|+++|+||+|+......            ++...+....+.
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (182)
T 3bwd_D           75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA  154 (182)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence            457889999999999765332221  122222    26899999999999654321            222333344564


Q ss_pred             -eeEEecCccccchhhHHHHHHHH
Q 023932          178 -KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       178 -~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                       .++++||++|.|++++.+.+.+.
T Consensus       155 ~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          155 PAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence             89999999999999998887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.59  E-value=1.2e-07  Score=89.64  Aligned_cols=90  Identities=13%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CC-CeEEEEEcccCcCH--HH----HHHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR-KRILVLNREDMISM--AD----RNAWATYF  172 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~k-p~IlVlNK~Dl~~~--~~----~~~~~~~~  172 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++++..........++.  +. ++++|+||+|+.+.  ..    .+++.+++
T Consensus       110 DtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~  188 (434)
T 1zun_B          110 DTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFA  188 (434)
T ss_dssp             ECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence            46887 345566677889999999999999875433332222222  44 58999999999862  22    12333444


Q ss_pred             HHcC-----CeeEEecCccccchhh
Q 023932          173 AKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       173 ~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                      .+.+     ..++++||++|.|+++
T Consensus       189 ~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          189 EGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             HTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHhCCCccCceEEEEeccCCCCccc
Confidence            4555     5789999999999987

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.59  E-value=2.3e-08  Score=82.12  Aligned_cols=87  Identities=14%  Similarity=0.035  Sum_probs=61.2

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCc
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak  185 (275)
                      .......++.+|++|+|+|+.++.+..+..+...+.     +.|+++|+||+|+.....     .+....+..++++||+
T Consensus        74 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~  148 (172)
T 2gj8_A           74 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSAR  148 (172)
T ss_dssp             HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTT
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCC
Confidence            344556789999999999998877655443333222     579999999999854211     0111124578999999


Q ss_pred             cccchhhHHHHHHHHhc
Q 023932          186 LGMGTMKLSRLAKALAS  202 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~  202 (275)
                      +|.|+++|.+.|.+...
T Consensus       149 ~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          149 TGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TCTTHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHhh
Confidence            99999999988876553

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.59  E-value=5.5e-08  Score=81.59  Aligned_cols=98  Identities=9%  Similarity=-0.064  Sum_probs=65.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+.....  ..+...+...
T Consensus        81 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  159 (200)
T 2o52_A           81 TAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE  159 (200)
T ss_dssp             CTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence            5665 33333455678999999999999875332211 111111     2678999999999964321  2334444555


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+..++.+||++|.|++++.+.|.+..
T Consensus       160 ~~~~~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          160 NELMFLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            678899999999999999988776544

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.59  E-value=7.4e-08  Score=79.46  Aligned_cols=99  Identities=11%  Similarity=-0.001  Sum_probs=60.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH-HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~  174 (275)
                      .||+ ..........++.+|++++|+|+.++.+..+.     .+..+..  +.|+++|+||+|+.... ..++..+...+
T Consensus        76 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  154 (190)
T 3con_A           76 TAGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS  154 (190)
T ss_dssp             CCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH
T ss_pred             CCCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH
Confidence            4664 23344445678999999999999765332211     1112222  68999999999987521 12233344445


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+..++.+||++|.|++++.+.|.+...
T Consensus       155 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  182 (190)
T 3con_A          155 YGIPFIETSAKTRQGVEDAFYTLVREIR  182 (190)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5778999999999999999888766543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.58  E-value=1.1e-07  Score=78.53  Aligned_cols=95  Identities=15%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             cchhHHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932          103 YPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF  172 (275)
Q Consensus       103 ~pG~~~~~~-k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~  172 (275)
                      .||+. ... .....+++++|++|+|+|+.++.+...     ..+...+  .+.|+++|+||+|+....+  .+....+.
T Consensus        76 t~G~~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  154 (189)
T 1z06_A           76 TAGQE-RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA  154 (189)
T ss_dssp             CCCSH-HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred             CCCch-hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH
Confidence            56653 333 445567899999999999986532211     1122222  2689999999999965321  22233334


Q ss_pred             HHcCCeeEEecCccc---cchhhHHHHHH
Q 023932          173 AKQGTKVIFSNGQLG---MGTMKLSRLAK  198 (275)
Q Consensus       173 ~~~g~~vi~iSak~g---~Gi~~L~~~i~  198 (275)
                      ...+..++.+||+++   .|++++.+.|.
T Consensus       155 ~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~  183 (189)
T 1z06_A          155 DTHSMPLFETSAKNPNDNDHVEAIFMTLA  183 (189)
T ss_dssp             HHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             HHcCCEEEEEeCCcCCcccCHHHHHHHHH
Confidence            456778999999999   77766665543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.58  E-value=2.4e-08  Score=82.82  Aligned_cols=85  Identities=12%  Similarity=-0.057  Sum_probs=57.7

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+..+.  .+...    ..+.|+++|+||+|+.....              .++...+..+.
T Consensus        85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (194)
T 2atx_A           85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI  164 (194)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence            456889999999999875332211  12222    22789999999999975321              12233334445


Q ss_pred             CC-eeEEecCccccchhhHHHHHHHH
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      +. .++.+||++|.|++++.+.|.+.
T Consensus       165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          165 GACCYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            65 79999999999999998877543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.58  E-value=4.1e-08  Score=83.02  Aligned_cols=89  Identities=6%  Similarity=-0.108  Sum_probs=59.4

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH----hc-CCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQW----LG-NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~----L~-~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...+..+|++|+|+|+.++.+..+. .+...    .. +.|+++|+||+|+....+.  +....+....+..++.+||++
T Consensus        79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (218)
T 4djt_A           79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKT  158 (218)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTT
T ss_pred             HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCC
Confidence            3467889999999999876433221 11111    12 5799999999999764221  222233334567899999999


Q ss_pred             ccchhhHHHHHHHHhch
Q 023932          187 GMGTMKLSRLAKALASD  203 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~  203 (275)
                      |.|++++.+.|.+....
T Consensus       159 g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          159 AHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             TBTTTHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999888766543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.58  E-value=8.1e-08  Score=76.41  Aligned_cols=88  Identities=10%  Similarity=-0.027  Sum_probs=59.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc-HH----HHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCc
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH-PL----MDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d-~~----l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ....+..+|.+++|+|+.++.+..+ ..    +.....  +.|+++|+||+|+.+... .+...+...+.+..++.+||+
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (166)
T 2ce2_X           68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK  147 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred             HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence            3456789999999999876432211 11    111122  689999999999876321 223333344557789999999


Q ss_pred             cccchhhHHHHHHHHh
Q 023932          186 LGMGTMKLSRLAKALA  201 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~  201 (275)
                      +|.|++++.+.|.+..
T Consensus       148 ~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          148 TRQGVEDAFYTLVREI  163 (166)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988876543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.58  E-value=4.5e-08  Score=84.35  Aligned_cols=106  Identities=14%  Similarity=0.089  Sum_probs=69.3

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI  160 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~  160 (275)
                      ...+.+||+...         .++......+++.+|++|+|+|..+..+..+.  .+..+.    .+.|++||.||+|+.
T Consensus        61 ~v~l~iwDtaGq---------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~  131 (216)
T 4dkx_A           61 TIRLQLWDTAGL---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA  131 (216)
T ss_dssp             EEEEEEECCSCT---------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred             EEEEEEEECCCc---------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence            345778886541         22222334578999999999998765333221  111111    157899999999996


Q ss_pred             CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ...  ..++..++..+.+..++.+||++|.|++++.+.|.+..
T Consensus       132 ~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence            532  12333344555678899999999999999987765543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.58  E-value=1.5e-07  Score=89.06  Aligned_cols=88  Identities=10%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHH-----cCCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK-----QGTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~-----~g~~vi~iSak  185 (275)
                      ...++.+|++|+|+|+.++.+..+..+...+.  ++++++|+||+|+.+...  .++..+.+.+     .+..++++||+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~  331 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL  331 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence            35789999999999999987776666655543  789999999999976422  2233333322     13579999999


Q ss_pred             cccchhhHHHHHHHHhc
Q 023932          186 LGMGTMKLSRLAKALAS  202 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~  202 (275)
                      +|.|+++|.+.+.+...
T Consensus       332 tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          332 TKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             TCTTGGGHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999887766543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.57  E-value=1.2e-08  Score=86.74  Aligned_cols=89  Identities=9%  Similarity=-0.075  Sum_probs=61.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc--HHH---HHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcccc
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH--PLM---DQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d--~~l---~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      ....++++|++|+|+|+.++.+..+  ..+   .....+.|+++|+||+|+.......+...+....+..++.+||++|.
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (221)
T 3gj0_A           81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY  160 (221)
T ss_dssp             CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTB
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCC
Confidence            3456789999999999987533221  111   11122789999999999975432222333444557789999999999


Q ss_pred             chhhHHHHHHHHhc
Q 023932          189 GTMKLSRLAKALAS  202 (275)
Q Consensus       189 Gi~~L~~~i~~l~~  202 (275)
                      |++++.+.|.+...
T Consensus       161 gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          161 NFEKPFLWLARKLI  174 (221)
T ss_dssp             TTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888776543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.57  E-value=6e-08  Score=80.31  Aligned_cols=89  Identities=8%  Similarity=-0.068  Sum_probs=60.8

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      .....++++|++|+|+|+.++.+...  ..+..+.    .+.|+++|+||+|+....  ..+....+....+..++.+||
T Consensus        90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  169 (193)
T 2oil_A           90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA  169 (193)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence            34457899999999999987533211  1111221    157899999999997532  123333444456788999999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|++++.+.|.+..
T Consensus       170 ~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          170 LDSTNVELAFETVLKEI  186 (193)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999988776543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.57  E-value=1.1e-07  Score=76.95  Aligned_cols=86  Identities=15%  Similarity=-0.027  Sum_probs=57.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ..++.+|++++|+|..++.+.... .+...+      .+.|+++|+||+|+.+..+  .++...+....+..++++||++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  152 (175)
T 2nzj_A           73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL  152 (175)
T ss_dssp             HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTT
T ss_pred             hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCC
Confidence            456789999999999765332111 111111      1679999999999975321  1222233344567899999999


Q ss_pred             ccchhhHHHHHHHHh
Q 023932          187 GMGTMKLSRLAKALA  201 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~  201 (275)
                      |.|++++.+.|.+..
T Consensus       153 g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          153 QHNVAELFEGVVRQL  167 (175)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988876654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.57  E-value=2e-08  Score=82.06  Aligned_cols=87  Identities=16%  Similarity=-0.019  Sum_probs=59.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~  175 (275)
                      ..++.+|++|+|+|+.++.+..+.  .+...+    .+.|+++|+||+|+......              ++...+....
T Consensus        72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  151 (186)
T 1mh1_A           72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  151 (186)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence            356889999999999865332221  122222    27899999999999753211              1222333345


Q ss_pred             CC-eeEEecCccccchhhHHHHHHHHhc
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +. .++++||++|.|++++.+.+.+...
T Consensus       152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          152 GAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            55 8999999999999999988776553

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.57  E-value=2e-08  Score=83.40  Aligned_cols=87  Identities=14%  Similarity=0.019  Sum_probs=59.7

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hcCCCeEEEEEcccCcCH----HHHHHHHHHHHHcCCe-eEEec
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISM----ADRNAWATYFAKQGTK-VIFSN  183 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~----L~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~g~~-vi~iS  183 (275)
                      ...++++|++|+|+|+.++.+..+  ..+...    ..+.|+++|+||+|+...    ...++..++....+.. ++.+|
T Consensus        89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  168 (194)
T 3reg_A           89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS  168 (194)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred             HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence            346789999999999987533222  112222    226899999999999742    1123333444455665 99999


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      |++|.|++++.+.+.+..
T Consensus       169 a~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          169 SVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999988876654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.56  E-value=5.2e-08  Score=88.19  Aligned_cols=54  Identities=35%  Similarity=0.482  Sum_probs=43.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC  270 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~  270 (275)
                      .-.|+|+|.||||||||+|+|++.+...+++.||||++.....       .+.+.+++|..
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~   70 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY   70 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCC
Confidence            4579999999999999999999998888999999999875322       24556666653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.56  E-value=1.3e-07  Score=78.65  Aligned_cols=97  Identities=12%  Similarity=0.008  Sum_probs=64.2

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFA  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~  173 (275)
                      .||+..  .......++.+|++|+|+|+.++.+..+.     .+....  .+.|+++|+||+|+....  ..++...+..
T Consensus        83 t~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~  160 (196)
T 2atv_A           83 TAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT  160 (196)
T ss_dssp             CCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             CCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence            455533  33445678999999999999875332111     112221  267999999999997532  1223333444


Q ss_pred             HcCCeeEEecCcccc-chhhHHHHHHHHh
Q 023932          174 KQGTKVIFSNGQLGM-GTMKLSRLAKALA  201 (275)
Q Consensus       174 ~~g~~vi~iSak~g~-Gi~~L~~~i~~l~  201 (275)
                      +.+..++++||++|. |++++.+.|.+..
T Consensus       161 ~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          161 ELACAFYECSACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred             HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence            557889999999999 9999988776544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.56  E-value=7.9e-08  Score=78.74  Aligned_cols=98  Identities=10%  Similarity=-0.064  Sum_probs=65.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH---h--cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW---L--GNRKRILVLNREDMISMA--DRNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~---L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+..+. .+...   .  .+.|+++|+||+|+....  ...+...+...
T Consensus        66 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  144 (186)
T 2bme_A           66 TAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE  144 (186)
T ss_dssp             ECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            4554 23344455678999999999999875332211 11111   1  267999999999996432  12333444555


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+..++.+||++|.|++++.+.+.+..
T Consensus       145 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          145 NELMFLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            678899999999999999988776544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.56  E-value=1.7e-07  Score=78.88  Aligned_cols=104  Identities=14%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh------c-CCCeEEEEEc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL------G-NRKRILVLNR  156 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k-~l~~~l~~aDlVI~VvDar~p~s~~d---~~l~~~L------~-~kp~IlVlNK  156 (275)
                      ..+..||        .||+. .... ....+++.+|++|+|+|+.+......   ..+...+      . +.|+++|+||
T Consensus        54 ~~~~i~D--------t~G~~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  124 (214)
T 2fh5_B           54 NSLTLID--------LPGHE-SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK  124 (214)
T ss_dssp             CEEEEEE--------CCCCH-HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred             cEEEEEE--------CCCCh-hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence            4466676        56763 3333 34456899999999999875211111   1122221      1 5799999999


Q ss_pred             ccCcCHHHHHHHHHH----HH-------------------H-------------c---CCeeEEecCccc------cchh
Q 023932          157 EDMISMADRNAWATY----FA-------------------K-------------Q---GTKVIFSNGQLG------MGTM  191 (275)
Q Consensus       157 ~Dl~~~~~~~~~~~~----~~-------------------~-------------~---g~~vi~iSak~g------~Gi~  191 (275)
                      +|+..........+.    +.                   +             .   +..++.+||++|      .|++
T Consensus       125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~  204 (214)
T 2fh5_B          125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ  204 (214)
T ss_dssp             TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence            999754322222111    11                   0             0   345889999999      9999


Q ss_pred             hHHHHHHHH
Q 023932          192 KLSRLAKAL  200 (275)
Q Consensus       192 ~L~~~i~~l  200 (275)
                      ++.++|.+.
T Consensus       205 ~lf~~l~~~  213 (214)
T 2fh5_B          205 DLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.55  E-value=1.1e-07  Score=77.17  Aligned_cols=105  Identities=10%  Similarity=0.002  Sum_probs=62.4

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh-----cCCCeEEEEEcc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL-----GNRKRILVLNRE  157 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~---l~~~L-----~~kp~IlVlNK~  157 (275)
                      ..+..||        .||+ ..........++.+|++|+|+|+.++.+..+.  .   +....     .+.|+++|+||+
T Consensus        58 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  128 (182)
T 1ky3_A           58 ATMQVWD--------TAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI  128 (182)
T ss_dssp             EEEEEEC--------CC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred             EEEEEEE--------CCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence            3456666        4554 23333444567899999999999875332211  1   11111     357999999999


Q ss_pred             cCcCHH---HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          158 DMISMA---DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       158 Dl~~~~---~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      |+....   ..++...+.. ..+..++++||++|.|++++.+.|.+..
T Consensus       129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            995432   1222222332 2346799999999999999988876544

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.54  E-value=3.3e-08  Score=82.88  Aligned_cols=85  Identities=14%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+..+  ..+...+    .+.|+++|+||+|+......              ++...+..+.
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  171 (201)
T 2gco_A           92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI  171 (201)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence            35789999999999876532211  1122222    27899999999999764221              1222333344


Q ss_pred             CC-eeEEecCccccchhhHHHHHHHH
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      +. .++++||++|.|+++|.+.|.+.
T Consensus       172 ~~~~~~~~SA~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          172 SAFGYLECSAKTKEGVREVFEMATRA  197 (201)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            55 78999999999999998887654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.54  E-value=6.4e-08  Score=81.80  Aligned_cols=98  Identities=12%  Similarity=0.028  Sum_probs=63.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~  174 (275)
                      .||+ ..........++++|++|+|+|+.++.+... ..+...+    . +.|+++|+||+|+....+  .++...+...
T Consensus        82 t~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  160 (201)
T 2ew1_A           82 TAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA  160 (201)
T ss_dssp             ECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             CCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            4554 2333444567799999999999986533211 1111111    1 578999999999974321  1223333344


Q ss_pred             cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      .+..++++||++|.|++++.+.|.+..
T Consensus       161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          161 QDMYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            567899999999999999988776544

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.54  E-value=1.5e-07  Score=76.44  Aligned_cols=85  Identities=15%  Similarity=0.053  Sum_probs=58.6

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-------C--CeeEEecCc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-------G--TKVIFSNGQ  185 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-------g--~~vi~iSak  185 (275)
                      .+..+|++|+|+|+.++...........+.  +.|+++|+||+|+.... .++....+...       +  ..++++||+
T Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            457899999999998765443333333333  78999999999997532 12222223221       1  378999999


Q ss_pred             cccchhhHHHHHHHHhc
Q 023932          186 LGMGTMKLSRLAKALAS  202 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~  202 (275)
                      +|.|+++|.+.|.+...
T Consensus       154 ~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence            99999999988876654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.53  E-value=2.3e-08  Score=83.34  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=56.9

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH------------cC
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QG  176 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~------------~g  176 (275)
                      ..++++|++|+|+|+.++.+..+  ..+..++     .+.|+++|+||+|+......++..+.+..            .+
T Consensus        86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T 1m2o_B           86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP  165 (190)
T ss_dssp             GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred             HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence            45689999999999987643221  1223332     26799999999999753222333333321            23


Q ss_pred             CeeEEecCccccchhhHHHHHHH
Q 023932          177 TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       177 ~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..++++||++|.|++++.+.|.+
T Consensus       166 ~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          166 VEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHT
T ss_pred             EEEEEeECCcCCCHHHHHHHHHh
Confidence            46899999999999999887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.53  E-value=8.8e-08  Score=92.02  Aligned_cols=89  Identities=19%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCcc
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQL  186 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~----~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~  186 (275)
                      +.....++++|++|+|+|+.++.+.    ....+...+.++|+++|+||+|+.+......  +.+.+. ...++.+||++
T Consensus       304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAkt  381 (476)
T 3gee_A          304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALN  381 (476)
T ss_dssp             ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTT
T ss_pred             HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECC
Confidence            3345567899999999999988765    3344455555889999999999986544322  223332 35789999999


Q ss_pred             ccchhhHHHHHHHHhc
Q 023932          187 GMGTMKLSRLAKALAS  202 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~  202 (275)
                      |.|+++|.+.|.+...
T Consensus       382 g~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          382 GDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TBSHHHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999998877654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.51  E-value=3.3e-07  Score=85.71  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=68.0

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcC-HHHH----HHHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMIS-MADR----NAWATYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~-~~~~----~~~~~~~~  173 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++++......+...++.  +.| +++|+||+|+.. ....    ++..+++.
T Consensus        72 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           72 DCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT  150 (397)
T ss_dssp             ECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence            36888 456667777889999999999999875443333333332  677 579999999984 2211    23334444


Q ss_pred             HcC-----CeeEEecCccccc----------hhhHHHHHHHHhc
Q 023932          174 KQG-----TKVIFSNGQLGMG----------TMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g-----~~vi~iSak~g~G----------i~~L~~~i~~l~~  202 (275)
                      +.+     ..++++||++|.|          +.+|.+.|.+..+
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            444     4789999999764          6778777776543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.51  E-value=7.6e-08  Score=86.86  Aligned_cols=53  Identities=30%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE--E----EEEeecccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV--S----QFFLLKYHQKC  270 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v--~----~~~~~~~~~~~  270 (275)
                      ..++|+|.||||||||+|+|++.+...+++.|+|||+...-  .    .+.+.+++|..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~   67 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence            47999999999999999999998877889999999975421  1    24556777664

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.51  E-value=4.1e-08  Score=82.32  Aligned_cols=88  Identities=10%  Similarity=-0.040  Sum_probs=59.6

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...++.+|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+....  ..+....+....+..++++||++
T Consensus        75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (206)
T 2bcg_Y           75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD  154 (206)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            3457899999999999875332211 111111     157899999999997532  12233334445677899999999


Q ss_pred             ccchhhHHHHHHHHhc
Q 023932          187 GMGTMKLSRLAKALAS  202 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~  202 (275)
                      |.|++++.+.|.+...
T Consensus       155 g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          155 STNVEDAFLTMARQIK  170 (206)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888766543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.51  E-value=3e-08  Score=83.61  Aligned_cols=85  Identities=16%  Similarity=-0.005  Sum_probs=57.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHH
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAK  174 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~  174 (275)
                      ...++++|++|+|+|+.++.+..+.  .+...+    .+.|+++|+||+|+......              ++...+...
T Consensus        96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (204)
T 4gzl_A           96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  175 (204)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence            3467899999999999875433221  122222    27899999999999754321              122233334


Q ss_pred             cCC-eeEEecCccccchhhHHHHHHH
Q 023932          175 QGT-KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       175 ~g~-~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+. .++++||++|.|++++.+.+.+
T Consensus       176 ~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          176 IGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            443 5899999999999999887765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.51  E-value=8.4e-08  Score=87.66  Aligned_cols=99  Identities=10%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK  174 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~  174 (275)
                      +.||+ ..+.......++.+|++|+|+|+.++.+..  ...+..++.     +.|+++|+||+|+......+++...+..
T Consensus       215 Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~  293 (329)
T 3o47_A          215 DVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL  293 (329)
T ss_dssp             ECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred             ECCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhch
Confidence            35664 334444556789999999999997654322  223333332     6789999999999765443444443322


Q ss_pred             -----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932          175 -----QGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       175 -----~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                           .+..++.+||++|.|+++|.+.|.+..
T Consensus       294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence                 124689999999999999998876654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.51  E-value=7.8e-08  Score=79.36  Aligned_cols=86  Identities=15%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEecC
Q 023932          117 QLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNG  184 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iSa  184 (275)
                      .++++|++|+|+|+.++.+..  ...+..++.     +.|+++|+||+|+......++..+.+.     ..+..++++||
T Consensus        86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  165 (189)
T 2x77_A           86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS  165 (189)
T ss_dssp             SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence            467899999999998764322  222333432     579999999999976533233333221     12346899999


Q ss_pred             ccccchhhHHHHHHHHhc
Q 023932          185 QLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~  202 (275)
                      +++.|++++.+.+.+...
T Consensus       166 ~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          166 KTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHH
Confidence            999999999988776553

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.50  E-value=3.1e-08  Score=94.83  Aligned_cols=54  Identities=31%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      .+++|+|+|.||||||||+|+|++.+...+++.||||+|.....      .+.+.+++|+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~  282 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI  282 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence            46789999999999999999999988888999999999985322      2456677765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.50  E-value=2.3e-07  Score=90.25  Aligned_cols=59  Identities=19%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.||| ..+...+...++.+|.+|+|+|+..+.......+...+.  ++|+++|+||+|+..
T Consensus        88 DTPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           88 DTPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred             ECCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence            35777 445556777899999999999999877666555555543  789999999999964

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.89  E-value=1.4e-08  Score=85.11  Aligned_cols=97  Identities=15%  Similarity=-0.002  Sum_probs=63.3

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc----CCCeEEEEEcccCcCHHHH----------
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR----------  165 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~----~kp~IlVlNK~Dl~~~~~~----------  165 (275)
                      +.||+ ..........++++|++|+|+|+.++.+..+.  .+...+.    +.|+++|+||+|+......          
T Consensus        84 Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 3th5_A           84 DTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
Confidence            45675 33444455678899999999999876444332  2222222    6799999999999754211          


Q ss_pred             ----HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHH
Q 023932          166 ----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       166 ----~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                          ++...+..+.+. .++++||++|.|++++.+.|.+
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence                111222223344 6889999999999998877643

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.49  E-value=2.1e-07  Score=75.46  Aligned_cols=104  Identities=7%  Similarity=-0.024  Sum_probs=66.4

Q ss_pred             cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----cCCCeEEEEEccc
Q 023932           89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRED  158 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L-----~~kp~IlVlNK~D  158 (275)
                      .+..||        .||+ ..........++.+|++++|+|+.++.+..+.     .+....     .+.|+++|+||+|
T Consensus        57 ~~~i~D--------t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D  127 (177)
T 1wms_A           57 TMQIWD--------TAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID  127 (177)
T ss_dssp             EEEEEE--------CCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred             EEEEEe--------CCCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence            466666        4554 22333444567899999999999875322211     111122     3569999999999


Q ss_pred             CcCHH-HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          159 MISMA-DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       159 l~~~~-~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +.... ..++..++.. ..+..++++||++|.|++++.+.+.+..
T Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            96322 1223333333 2356899999999999999988776543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.48  E-value=2.2e-07  Score=75.62  Aligned_cols=86  Identities=13%  Similarity=-0.001  Sum_probs=56.9

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh--------cCCCeEEEEEcccCcCH----HHHHHHHHHHHHc-CCeeEE
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPL-MDQWL--------GNRKRILVLNREDMISM----ADRNAWATYFAKQ-GTKVIF  181 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L--------~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~-g~~vi~  181 (275)
                      .+++++|++|+|+|+.++.+..+.. +..++        .+.|+++|+||+|+...    ...++..++..+. +..++.
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~  147 (178)
T 2iwr_A           68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE  147 (178)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred             HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence            4678899999999998764332211 11122        25799999999998421    1112222333333 578999


Q ss_pred             ecCccccchhhHHHHHHHHh
Q 023932          182 SNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +||++|.|++++.+.+.+..
T Consensus       148 ~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          148 TXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EBTTTTBTHHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHHHH
Confidence            99999999999988776544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.47  E-value=1.3e-07  Score=84.02  Aligned_cols=55  Identities=29%  Similarity=0.383  Sum_probs=44.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      .++|+++|.||||||||+|+|++.. ..+++.||+|.+.....      .+.+.+++|...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~   63 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL   63 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence            4689999999999999999999886 78999999998865433      2456777776544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.47  E-value=1.7e-06  Score=70.80  Aligned_cols=84  Identities=18%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             HhhcCeEEEEEeCCCCC-----------CCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-------
Q 023932          118 LKLMDVVIEVRDARIPL-----------STTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-------  177 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~-----------s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-------  177 (275)
                      ...+++++.|+|.....           ...+..+...+.  +.|+++|+||+|+..... +...+...+.+.       
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH-HHHHHHHHHHTCCGGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH-HHHHHHHHHhhhhhhccCC
Confidence            34467888888865321           111122333332  789999999999976431 112122223333       


Q ss_pred             eeEEecCccccchhhHHHHHHHHhc
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .++++||++|.|++++.+.+.+...
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcc
Confidence            4799999999999999888776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.47  E-value=2.6e-07  Score=91.05  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=70.1

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-QGT-  177 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-  177 (275)
                      +.|||. .+...+...++.+|.+|+|+|+.++...........+  .+.|+++|+||+|+.... ..+..+.+.+ .+. 
T Consensus        79 DTPGh~-dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           79 DTPGHV-DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             CCCCSG-GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC
T ss_pred             ECCCcH-hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC
Confidence            368884 4556677788999999999999987654433322222  278999999999997532 2223333333 343 


Q ss_pred             --eeEEecCccccchhhHHHHHHHHhc
Q 023932          178 --KVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       178 --~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                        +++++||++|.|+++|++.|.+..+
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              4899999999999999998876654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.47  E-value=8.8e-08  Score=80.64  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=57.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHHHHH--------------HHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADRNA--------------WATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~--------------~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+...  ..+...+    .+.|+++|+||+|+.......+              ...+..+.
T Consensus        92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  171 (207)
T 2fv8_A           92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI  171 (207)
T ss_dssp             GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence            45688999999999876532211  1122222    2789999999999976432211              11222233


Q ss_pred             CC-eeEEecCccccchhhHHHHHHHHh
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +. .++.+||++|.|+++|.+.|.+..
T Consensus       172 ~~~~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          172 QAYDYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            44 789999999999999998876653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.47  E-value=5.3e-07  Score=79.12  Aligned_cols=81  Identities=11%  Similarity=0.016  Sum_probs=55.9

Q ss_pred             hcCeEEEEEeCCCC--CCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCCeeEEecCccccc
Q 023932          120 LMDVVIEVRDARIP--LSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG  189 (275)
Q Consensus       120 ~aDlVI~VvDar~p--~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~~vi~iSak~g~G  189 (275)
                      ++|++|+|+|+.++  .+...  ..+..+.     .+.|+++|+||+|+......++..++... .+..++.+||++|.|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g  241 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN  241 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence            69999999999876  33221  1111111     26899999999999876554444444433 257899999999999


Q ss_pred             hhhHHHHHHHH
Q 023932          190 TMKLSRLAKAL  200 (275)
Q Consensus       190 i~~L~~~i~~l  200 (275)
                      ++++.+.|.+.
T Consensus       242 v~elf~~l~~~  252 (255)
T 3c5h_A          242 VDLAFSTLVQL  252 (255)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998877654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.47  E-value=3e-07  Score=81.25  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ...+|+++|.+|||||||+|+|++.....+++.+|+|++...+.      .+.+.+++|+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~   99 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE   99 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence            35799999999999999999999988788999999999887654      366777777643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.47  E-value=4e-07  Score=76.23  Aligned_cols=86  Identities=17%  Similarity=0.007  Sum_probs=58.6

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      .+++.+|++|+|+|+.++.+..  ...+..+.     .+.|+++|.||+|+....  ..++...+....+..++.+||++
T Consensus        92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~  171 (195)
T 3cbq_A           92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  171 (195)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence            4578899999999997653221  12222221     267999999999997432  12233333444567899999999


Q ss_pred             ccchhhHHHHHHHHh
Q 023932          187 GMGTMKLSRLAKALA  201 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~  201 (275)
                      |.|++++.+.+.+..
T Consensus       172 ~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          172 HHNTRELFEGAVRQI  186 (195)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988776543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.46  E-value=7e-07  Score=83.02  Aligned_cols=138  Identities=14%  Similarity=0.053  Sum_probs=84.6

Q ss_pred             eeeEecC--CCCCCCCCCCCCCCCcchhhHHh--hcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEE
Q 023932           51 IIQTVGG--KQSSWHGGNSNNSNGSIEAYEEE--CDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIE  126 (275)
Q Consensus        51 ~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~  126 (275)
                      .+.++|.  .|    |+++-++....+..-..  ..+......+..||        .||| .++.+.+...++.+|++|+
T Consensus        23 ~i~iiG~~d~G----KSTL~~~L~~~giTi~~~~~~~~~~~~~i~iiD--------tPGh-~~f~~~~~~~~~~aD~ail   89 (370)
T 2elf_A           23 NVAIIGTEKSG----RTSLAANLGKKGTSSDITMYNNDKEGRNMVFVD--------AHSY-PKTLKSLITALNISDIAVL   89 (370)
T ss_dssp             EEEEEESTTSS----HHHHHHTTSEEEEESSSEEEEECSSSSEEEEEE--------CTTT-TTCHHHHHHHHHTCSEEEE
T ss_pred             EEEEECCCCCC----HHHHHHHHHhCCEEEEeeEEEEecCCeEEEEEE--------CCCh-HHHHHHHHHHHHHCCEEEE
Confidence            7888887  34    77776665511110000  00111122344444        6888 4566777778899999999


Q ss_pred             EEeCCCCCCCCcHHHHHHh--cCCCe-EEEEE-cccCcCHHHHHH----HHHHHHHcC---CeeEE--ecCcc---ccch
Q 023932          127 VRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISMADRNA----WATYFAKQG---TKVIF--SNGQL---GMGT  190 (275)
Q Consensus       127 VvDar~p~s~~d~~l~~~L--~~kp~-IlVlN-K~Dl~~~~~~~~----~~~~~~~~g---~~vi~--iSak~---g~Gi  190 (275)
                      |+| ..+......+...++  .+.|. ++++| |+|+ +....++    ..+++.+.+   ..+++  +||++   +.|+
T Consensus        90 Vvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           90 CIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             EEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             EEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence            999 655433223332322  26787 99999 9999 6543332    222222222   57899  99999   9999


Q ss_pred             hhHHHHHHHHhch
Q 023932          191 MKLSRLAKALASD  203 (275)
Q Consensus       191 ~~L~~~i~~l~~~  203 (275)
                      ++|.+.|.+..+.
T Consensus       168 ~~L~~~l~~~~~~  180 (370)
T 2elf_A          168 DELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccc
Confidence            9999888776543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.46  E-value=4.8e-08  Score=83.12  Aligned_cols=87  Identities=11%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCH--------------HHHHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISM--------------ADRNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~--------------~~~~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+..+  ..+...+    .+.|+++|+||+|+...              ...++...+..+.
T Consensus        94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (214)
T 3q3j_B           94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL  173 (214)
T ss_dssp             GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence            45788999999999987543322  1122222    26799999999999642              1112233344455


Q ss_pred             CC-eeEEecCccccc-hhhHHHHHHHHhc
Q 023932          176 GT-KVIFSNGQLGMG-TMKLSRLAKALAS  202 (275)
Q Consensus       176 g~-~vi~iSak~g~G-i~~L~~~i~~l~~  202 (275)
                      +. .++.+||++|.| ++++.+.+.+...
T Consensus       174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          174 GAEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            66 899999999998 9999888766543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.46  E-value=5.6e-08  Score=85.80  Aligned_cols=80  Identities=19%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHH-HHHHHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~-~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      +++|++|+|+|+.+.  ..+..+..++.  +.|+++|+||+|+.......... ......+..++++||++|.|+++|.+
T Consensus        82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred             CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence            889999999999863  22233444444  78999999999987543211111 12233578999999999999999999


Q ss_pred             HHHHH
Q 023932          196 LAKAL  200 (275)
Q Consensus       196 ~i~~l  200 (275)
                      .+.+.
T Consensus       160 ~i~~~  164 (256)
T 3iby_A          160 SLLHC  164 (256)
T ss_dssp             HHHTC
T ss_pred             HHHhh
Confidence            88765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.45  E-value=2e-07  Score=78.40  Aligned_cols=87  Identities=11%  Similarity=-0.057  Sum_probs=59.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHH----------HHHHHHHHHHcCC-e
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD----------RNAWATYFAKQGT-K  178 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~----------~~~~~~~~~~~g~-~  178 (275)
                      ..++++|++|+|+|+.++.+..+.  .+...+    .+.|+++|+||+|+.....          .++..++..+.+. .
T Consensus        76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  155 (212)
T 2j0v_A           76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA  155 (212)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSE
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCce
Confidence            357899999999999765332211  122222    2789999999999965422          2233333444564 8


Q ss_pred             eEEecCccccchhhHHHHHHHHhc
Q 023932          179 VIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       179 vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ++++||++|.|++++.+.|.+...
T Consensus       156 ~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          156 YIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999888766543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.45  E-value=4.2e-08  Score=83.69  Aligned_cols=88  Identities=11%  Similarity=-0.096  Sum_probs=57.2

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...++.+|++|+|+|+.++.+..+. .+...+     .+.|+++|+||+|+....+  .++...+....+..++++||++
T Consensus        80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  159 (223)
T 3cpj_B           80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALN  159 (223)
T ss_dssp             GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            3456899999999999875432211 111111     1678999999999975321  2233344445677899999999


Q ss_pred             ccchhhHHHHHHHHhc
Q 023932          187 GMGTMKLSRLAKALAS  202 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~  202 (275)
                      +.|++++.+.|.+...
T Consensus       160 ~~gi~~l~~~l~~~i~  175 (223)
T 3cpj_B          160 SENVDKAFEELINTIY  175 (223)
T ss_dssp             CCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888765543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.44  E-value=3e-07  Score=75.97  Aligned_cols=54  Identities=28%  Similarity=0.516  Sum_probs=35.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~  269 (275)
                      ...+++++|.+|||||||+|+|++.. ...+++.+|+|++...+.   .+.+.+++|+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~   79 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY   79 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCC
Confidence            46799999999999999999999876 567889999999988765   3566777774

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.43  E-value=5.6e-08  Score=81.17  Aligned_cols=87  Identities=11%  Similarity=0.014  Sum_probs=58.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHH---HHh-----cCCCeEEEEEcccCcCHH-HHHHHHHHHH-HcCCeeEEec
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMD---QWL-----GNRKRILVLNREDMISMA-DRNAWATYFA-KQGTKVIFSN  183 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~---~~L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~-~~g~~vi~iS  183 (275)
                      ..++.+|++|+|+|+.++.+..+  ..+.   ...     .+.|+++|+||+|+.... ..+....+.. ..+..++.+|
T Consensus        76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  155 (207)
T 1vg8_A           76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS  155 (207)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECB
T ss_pred             HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEe
Confidence            45688999999999987533211  1111   222     257999999999997432 1222333333 3457899999


Q ss_pred             CccccchhhHHHHHHHHhc
Q 023932          184 GQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~  202 (275)
                      |++|.|++++.+.|.+...
T Consensus       156 a~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          156 AKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999888766543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.43  E-value=3.2e-07  Score=75.76  Aligned_cols=87  Identities=10%  Similarity=-0.049  Sum_probs=59.8

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...++.+|++|+|+|+.++.+.... .+...+     .+.|+++|+||+|+.....  .+...++..+.+..++++||++
T Consensus        89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  168 (189)
T 2gf9_A           89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE  168 (189)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence            3467899999999999765322111 111111     2679999999999975321  2233344445678899999999


Q ss_pred             ccchhhHHHHHHHHh
Q 023932          187 GMGTMKLSRLAKALA  201 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~  201 (275)
                      |.|++++.+.|.+..
T Consensus       169 g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          169 NINVKQVFERLVDVI  183 (189)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988876654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.41  E-value=3.2e-07  Score=75.36  Aligned_cols=54  Identities=30%  Similarity=0.531  Sum_probs=45.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~~~~~~  269 (275)
                      ...+++++|.+|||||||+|+|++.....+++.+|+|++.....   .+.+.+++|+
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~   78 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGY   78 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCC
Confidence            35689999999999999999999988788999999999987664   3566777773

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.40  E-value=3.4e-07  Score=76.17  Aligned_cols=86  Identities=12%  Similarity=-0.081  Sum_probs=58.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+..+.  .+...    ..+.|+++|+||+|+.....              .++...+....
T Consensus        87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  166 (201)
T 2q3h_A           87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI  166 (201)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence            357899999999999865432221  12221    23789999999999975211              12222333344


Q ss_pred             CC-eeEEecCccccchhhHHHHHHHHh
Q 023932          176 GT-KVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       176 g~-~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +. .++.+||++|.|++++.+.+.+..
T Consensus       167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          167 KAASYIECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence            55 899999999999999988776544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.40  E-value=4.6e-07  Score=83.49  Aligned_cols=104  Identities=13%  Similarity=-0.006  Sum_probs=67.5

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHH
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR  165 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~  165 (275)
                      ...+++++|+..        ..    +.....++.+|++|+|+|+......  ..+...+.++|.++|+||+|+.+....
T Consensus       170 ~~~~~iiiDTpG--------i~----~~~~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~  235 (355)
T 3p32_A          170 AGFDVILIETVG--------VG----QSEVAVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEA  235 (355)
T ss_dssp             TTCCEEEEEECS--------CS----SHHHHHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHH
T ss_pred             CCCCEEEEeCCC--------CC----cHHHHHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHH
Confidence            456788888543        11    1122345899999999997643221  111122235699999999999865443


Q ss_pred             HHHHHHHHH----c-------CCeeEEecCccccchhhHHHHHHHHhch
Q 023932          166 NAWATYFAK----Q-------GTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       166 ~~~~~~~~~----~-------g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ......+.+    .       +..++++||++|.|+++|.+.|.+....
T Consensus       236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            333333322    1       3579999999999999999988776543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.40  E-value=8.4e-07  Score=78.57  Aligned_cols=82  Identities=10%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             cCeEEEEEeC-CCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHH----HHHHHHcCCeeEEecCccccchhhHH
Q 023932          121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       121 aDlVI~VvDa-r~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~----~~~~~~~g~~vi~iSak~g~Gi~~L~  194 (275)
                      +|++++++|. +.++...+..+.+.+. ++|+++|+||+|+....+....    .+.+...++.++.+|++++.|++++.
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~  195 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  195 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence            7788888865 4466666666666666 7899999999999877655433    33444567788899999999999998


Q ss_pred             HHHHHHhc
Q 023932          195 RLAKALAS  202 (275)
Q Consensus       195 ~~i~~l~~  202 (275)
                      +.|.+..+
T Consensus       196 ~~l~~~~p  203 (274)
T 3t5d_A          196 KKIKDRLP  203 (274)
T ss_dssp             HHHHHTCS
T ss_pred             HHHhcCCC
Confidence            88776543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.39  E-value=1.9e-07  Score=79.03  Aligned_cols=54  Identities=28%  Similarity=0.373  Sum_probs=44.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      ...+|+++|.+|||||||+|+|++.. ...+++.||+|++.....       .+.+.+++|+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   89 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY   89 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence            35799999999999999999999887 468999999999986554       2456777774

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.38  E-value=9.1e-08  Score=91.58  Aligned_cols=89  Identities=17%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      +.....+..+|++|+|+|+.++.+..+..+...+.++|+++|+||+|+.+....... ..+. .+..++.+||++|.|++
T Consensus       295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~~-~~~~~i~iSAktg~Gi~  372 (462)
T 3geh_A          295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYPE-NITQIVHTAAAQKQGID  372 (462)
T ss_dssp             ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCCT-TCCCEEEEBTTTTBSHH
T ss_pred             HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHhc-cCCcEEEEECCCCCCHH
Confidence            344556788999999999998877766667777778899999999999875432210 0000 23578999999999999


Q ss_pred             hHHHHHHHHhc
Q 023932          192 KLSRLAKALAS  202 (275)
Q Consensus       192 ~L~~~i~~l~~  202 (275)
                      +|.+.|.+...
T Consensus       373 eL~~~i~~~~~  383 (462)
T 3geh_A          373 SLETAILEIVQ  383 (462)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99998887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.38  E-value=1.5e-07  Score=83.63  Aligned_cols=83  Identities=20%  Similarity=0.103  Sum_probs=57.6

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHH-HHHHHHHcCCeeEEecCccccchhhHH
Q 023932          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~-~~~~~~~~g~~vi~iSak~g~Gi~~L~  194 (275)
                      .+++|++|+|+|+.+.  .....+..++.  +.|+++|+||+|+........ ........+..++++||++|.|+++|.
T Consensus        83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~  160 (274)
T 3i8s_A           83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK  160 (274)
T ss_dssp             HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred             hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence            4799999999999763  12222333332  789999999999865432111 111223357889999999999999999


Q ss_pred             HHHHHHhc
Q 023932          195 RLAKALAS  202 (275)
Q Consensus       195 ~~i~~l~~  202 (275)
                      +.|.+...
T Consensus       161 ~~i~~~~~  168 (274)
T 3i8s_A          161 LAIDRYKA  168 (274)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHHHh
Confidence            88876554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.37  E-value=4e-07  Score=81.10  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-----EEEeeccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-----QFFLLKYHQKCK  271 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-----~~~~~~~~~~~~  271 (275)
                      ..+|+++|.||||||||+|+|.+.. ..+++.||+|.+.....     .+.+.+++|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~   61 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS   61 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence            4689999999999999999999865 67899999999875433     244555555443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.37  E-value=9e-07  Score=77.84  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=45.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC  270 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~  270 (275)
                      ..++|+++|.+|||||||+|+|++.....+++.+++|.+.....      .+.+.+++|.-
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~   95 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV   95 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence            36899999999999999999999988778999999999887654      35677777753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.37  E-value=2.8e-09  Score=103.79  Aligned_cols=131  Identities=19%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHH----HH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYF----AK  174 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~----~~  174 (275)
                      .||| ..+.......+..+|++|+|+|+.++...........+.  +.|+++|+||+|+.....  ....+..+    ..
T Consensus        59 TPGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~  137 (537)
T 3izy_P           59 TPGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCED  137 (537)
T ss_dssp             CSSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCC
T ss_pred             CCCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHh
Confidence            4666 222223333567899999999999876655444444443  789999999999964321  11111111    01


Q ss_pred             c--CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCC-----------C-CCcceeEEEEeeCCCChhHHH
Q 023932          175 Q--GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKG-----------L-LPRAVRAGIVGYPNVGKSSLI  234 (275)
Q Consensus       175 ~--g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~-----------~-~~~~~rv~IvG~pNvGKSTLI  234 (275)
                      .  ...++++||++|.|+++|.+.+..+++..........           . ....+..++|+..+++|+..+
T Consensus       138 ~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v  211 (537)
T 3izy_P          138 YGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL  211 (537)
T ss_dssp             SSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred             cCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence            1  1368899999999999999988876543211111000           0 012356788888888888764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.36  E-value=1.6e-06  Score=70.25  Aligned_cols=80  Identities=19%  Similarity=0.155  Sum_probs=53.1

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      .++|++++|+|+....  ....+...+  .+.|+++|.||+|+....... .........+..++++||++|.|++++.+
T Consensus        80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~  157 (165)
T 2wji_A           80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK  157 (165)
T ss_dssp             HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred             CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence            4899999999987531  111122222  278999999999986432110 11122233467899999999999999988


Q ss_pred             HHHHH
Q 023932          196 LAKAL  200 (275)
Q Consensus       196 ~i~~l  200 (275)
                      .+.+.
T Consensus       158 ~l~~~  162 (165)
T 2wji_A          158 AISIA  162 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.36  E-value=1.8e-06  Score=90.35  Aligned_cols=101  Identities=17%  Similarity=0.084  Sum_probs=71.1

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHH-H----HHHHHHH
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMAD-R----NAWATYF  172 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~-~----~~~~~~~  172 (275)
                      -+.||| ..+.+.+...+..+|++|+|+|++++......+....+.  +.| +|+|+||+|+.+..+ .    ++..+++
T Consensus       364 IDTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL  442 (1289)
T 3avx_A          364 VDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL  442 (1289)
T ss_dssp             EECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred             EECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence            357998 456777777889999999999999886665544444333  778 689999999985222 1    2333344


Q ss_pred             HHcC-----CeeEEecCccc--------cchhhHHHHHHHHhc
Q 023932          173 AKQG-----TKVIFSNGQLG--------MGTMKLSRLAKALAS  202 (275)
Q Consensus       173 ~~~g-----~~vi~iSak~g--------~Gi~~L~~~i~~l~~  202 (275)
                      .+.+     ..++++||++|        .|+.+|.+.|.+..+
T Consensus       443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            4444     47899999999        567788887776443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.36  E-value=5.5e-07  Score=74.56  Aligned_cols=85  Identities=11%  Similarity=-0.018  Sum_probs=57.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcCH----HHHHHHHHHHHHcC-CeeEEecC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISM----ADRNAWATYFAKQG-TKVIFSNG  184 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~g-~~vi~iSa  184 (275)
                      .++.+|++++|+|+.++.+..+ ..+...+      .+.|+++|.||+|+...    ...++..++..+.+ ..++.+||
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  161 (184)
T 3ihw_A           82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA  161 (184)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred             eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence            6788999999999987543222 1122222      14699999999998421    11223333444554 78999999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|++++.+.+.+..
T Consensus       162 ~~~~gv~~lf~~l~~~i  178 (184)
T 3ihw_A          162 TYGLNVERVFQDVAQKV  178 (184)
T ss_dssp             TTTBTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999988776543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.36  E-value=7.3e-07  Score=77.87  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-ccccceEEE------EEEeecccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-tTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      ...+|+|+|.+|||||||+|+|++.....++..|+ +|++.....      .+.+.+++|..+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~   84 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW   84 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence            45799999999999999999999887777777776 888876432      4677888887654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.36  E-value=4.4e-07  Score=85.09  Aligned_cols=44  Identities=32%  Similarity=0.396  Sum_probs=39.0

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ...+.+++|+|.||||||||+|+|++...+.+++.|+||++...
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~   60 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE   60 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence            34567999999999999999999999886699999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.36  E-value=3.4e-07  Score=75.86  Aligned_cols=86  Identities=10%  Similarity=-0.032  Sum_probs=59.0

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEec
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~---l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iS  183 (275)
                      ...++.+|++|+|+|+.++.+..+.  .   +....    .+.|+++|+||+|+....  ..++..++..+.+..++.+|
T Consensus        86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  165 (187)
T 3c5c_A           86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS  165 (187)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence            4578899999999999865322211  1   11111    368999999999996432  12233344455678899999


Q ss_pred             C-ccccchhhHHHHHHHH
Q 023932          184 G-QLGMGTMKLSRLAKAL  200 (275)
Q Consensus       184 a-k~g~Gi~~L~~~i~~l  200 (275)
                      | ++|.|++++.+.+.+.
T Consensus       166 a~~~g~gv~~lf~~l~~~  183 (187)
T 3c5c_A          166 ACLDFEHVQHVFHEAVRE  183 (187)
T ss_dssp             SSSCSHHHHHHHHHHHHH
T ss_pred             ecCccccHHHHHHHHHHH
Confidence            9 8999999998876554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.34  E-value=3.7e-06  Score=70.28  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH----HHHHHHHHHcC--CeeEEecCccccch
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGT  190 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~----~~~~~~~~~~g--~~vi~iSak~g~Gi  190 (275)
                      ..+|.+++++|+..+....+..+..++.  +.|.++|.||+|+.+..+.    ......+.+.+  ..++++||+++.|+
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~  186 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV  186 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence            5789999999998876544445555553  7899999999999876432    22223333332  46789999999999


Q ss_pred             hhHHHHHHHHhch
Q 023932          191 MKLSRLAKALASD  203 (275)
Q Consensus       191 ~~L~~~i~~l~~~  203 (275)
                      +++.+.|.++..+
T Consensus       187 ~~l~~~l~~~~~~  199 (210)
T 1pui_A          187 DKLRQKLDTWFSE  199 (210)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998877654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.33  E-value=4.1e-07  Score=89.43  Aligned_cols=55  Identities=24%  Similarity=0.238  Sum_probs=40.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc----cce-EE--------EEEEeecccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLK-YV--------SQFFLLKYHQKCKV  272 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr----~~~-~v--------~~~~~~~~~~~~~~  272 (275)
                      ...+|+|+|.||||||||||+|++.....  +++|+|+    .+. |.        ..+++++++|+...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            45789999999999999999999987432  5555554    432 21        24788899988654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.33  E-value=1.7e-06  Score=81.82  Aligned_cols=89  Identities=15%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc--C-CCeEEEEEcccCcC----HHH---
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG--N-RKRILVLNREDMIS----MAD---  164 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~----~~~---  164 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++++       ..........++.  + .++++|+||+|+.+    ...   
T Consensus        90 DtpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~  168 (435)
T 1jny_A           90 DAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE  168 (435)
T ss_dssp             CCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred             ECCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence            46888 45666677788999999999999875       2222222222221  4 46899999999986    221   


Q ss_pred             -HHHHHHHHHHcC-----CeeEEecCccccchh
Q 023932          165 -RNAWATYFAKQG-----TKVIFSNGQLGMGTM  191 (275)
Q Consensus       165 -~~~~~~~~~~~g-----~~vi~iSak~g~Gi~  191 (275)
                       .++..+++.+.+     ..++++||++|.|+.
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~  201 (435)
T 1jny_A          169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  201 (435)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence             223334444444     468999999999986

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.32  E-value=3.8e-07  Score=89.85  Aligned_cols=86  Identities=17%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH-----------------H--------HHHHH
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA-----------------D--------RNAWA  169 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~-----------------~--------~~~~~  169 (275)
                      .+..+|++|+|+|+.++..........++.  +.|+++|+||+|+....                 .        ..+..
T Consensus        90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~  169 (594)
T 1g7s_A           90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV  169 (594)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence            457799999999999876544434444443  78999999999996410                 0        01122


Q ss_pred             HHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhc
Q 023932          170 TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       170 ~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      +.+.+.+               ..++++||++|.|+++|++.|..+.+
T Consensus       170 ~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          170 GKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            2232222               26899999999999999998877654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.32  E-value=3.1e-07  Score=82.26  Aligned_cols=86  Identities=17%  Similarity=-0.011  Sum_probs=58.3

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHH
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAK  174 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~  174 (275)
                      ..+++++|++|+|+|+.++.+..+.  .+...    ..++|+++|+||+|+.....              .++...+..+
T Consensus       221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  300 (332)
T 2wkq_A          221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  300 (332)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH
Confidence            3457899999999999875432221  12122    22789999999999965321              1122233344


Q ss_pred             cCC-eeEEecCccccchhhHHHHHHHH
Q 023932          175 QGT-KVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       175 ~g~-~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .+. .++++||++|.|++++.+.|.+.
T Consensus       301 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          301 IGAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             TTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            554 89999999999999998877654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.31  E-value=5.2e-07  Score=75.37  Aligned_cols=87  Identities=11%  Similarity=-0.041  Sum_probs=59.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ..++.+|++|+|+|+.++.+...  ..+..+..     +.|+++|+||+|+.+...  ......+....+..++++||++
T Consensus        91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  170 (201)
T 3oes_A           91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE  170 (201)
T ss_dssp             GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCC
Confidence            35688999999999986432211  11111211     579999999999975421  1223334445577899999999


Q ss_pred             ccchhhHHHHHHHHhc
Q 023932          187 GMGTMKLSRLAKALAS  202 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~  202 (275)
                      |.|++++.+.|.+...
T Consensus       171 ~~~v~~l~~~l~~~i~  186 (201)
T 3oes_A          171 NQLTQGIFTKVIQEIA  186 (201)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888766544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.30  E-value=5.2e-07  Score=79.58  Aligned_cols=55  Identities=33%  Similarity=0.395  Sum_probs=43.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      ..+|+++|.||||||||+|+|++.. ..++..||+|.+.....      .+.+.+++|...+
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~   65 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL   65 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            5789999999999999999999866 56899999998865433      3456667665443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.30  E-value=1.2e-06  Score=83.74  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHh--cCCC-eEEEEEcccCcC----HHH-
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDMIS----MAD-  164 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~~L--~~kp-~IlVlNK~Dl~~----~~~-  164 (275)
                      +-+.||| ..+.+.+...+..+|++|+|+|++++..       ....+....+  .+.| +++|+||+|+..    ... 
T Consensus       125 iiDtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~  203 (467)
T 1r5b_A          125 LLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY  203 (467)
T ss_dssp             ECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred             EEECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence            4457998 5667777778899999999999988631       1222222222  2666 899999999954    221 


Q ss_pred             ---HHHHHHHHHHc-C------CeeEEecCccccchhh
Q 023932          165 ---RNAWATYFAKQ-G------TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       165 ---~~~~~~~~~~~-g------~~vi~iSak~g~Gi~~  192 (275)
                         .++..+++.+. +      ..++++||++|.|+.+
T Consensus       204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~  241 (467)
T 1r5b_A          204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  241 (467)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence               12333444444 3      4589999999999875

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.30  E-value=1.5e-07  Score=77.54  Aligned_cols=85  Identities=15%  Similarity=0.059  Sum_probs=56.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhcCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMA--------------DRNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l----~~~L~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~  175 (275)
                      ..++.+|++|+|+|+.++.+..+.  .+    .....+.|+++|+||+|+....              ..++..++..+.
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  153 (184)
T 1m7b_A           74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  153 (184)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence            356899999999999865332221  11    1222378999999999997421              112222333344


Q ss_pred             C-CeeEEecCc-cccchhhHHHHHHHH
Q 023932          176 G-TKVIFSNGQ-LGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 g-~~vi~iSak-~g~Gi~~L~~~i~~l  200 (275)
                      + ..++.+||+ ++.|++++.+.+.+.
T Consensus       154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          154 GAATYIECSALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             TCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence            5 689999998 689999998876654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.30  E-value=4.2e-07  Score=89.80  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=59.3

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc--C-CCeEEEEEcccCcCH--HHH----
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----  165 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~--~~~----  165 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++.+       ..........++.  + +++|+|+||+|+.+.  ...    
T Consensus       251 DTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~  329 (611)
T 3izq_1          251 DAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK  329 (611)
T ss_dssp             ECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHH
T ss_pred             ECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHH
Confidence            46888 45667777778999999999999864       1112222222222  4 458999999999862  211    


Q ss_pred             HHHHHHHHHcC-----CeeEEecCccccchhhH
Q 023932          166 NAWATYFAKQG-----TKVIFSNGQLGMGTMKL  193 (275)
Q Consensus       166 ~~~~~~~~~~g-----~~vi~iSak~g~Gi~~L  193 (275)
                      ++...++.+.+     ..++++||++|.|+.++
T Consensus       330 ~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          330 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22333333333     47899999999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.30  E-value=8e-07  Score=76.73  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=39.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCC--cccccceEEE------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p--GtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ...+|+++|.+|||||||+|+|++... ..+..|  ++|++.....      .+.+.+++|+.+
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~   90 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFD   90 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence            468999999999999999999998774 455555  8898876543      357778887643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.29  E-value=2.7e-07  Score=88.13  Aligned_cols=90  Identities=14%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CcHHHHHHh--cCCC-eEEEEEcccCcC--HHHHH---
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDMIS--MADRN---  166 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~d~~l~~~L--~~kp-~IlVlNK~Dl~~--~~~~~---  166 (275)
                      +.||| ..+.+.+...+..+|++|+|+|++++...       .......++  .+.| +++|+||+|+..  ....+   
T Consensus        91 DtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~  169 (458)
T 1f60_A           91 DAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV  169 (458)
T ss_dssp             ECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHH
T ss_pred             ECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHH
Confidence            46887 46677777788999999999999865311       111222222  2555 889999999983  32222   


Q ss_pred             -HHHHHHHHcC-----CeeEEecCccccchhh
Q 023932          167 -AWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       167 -~~~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                       +..+++...+     ..++++||++|.|+.+
T Consensus       170 ~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          170 KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence             2333334444     4799999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.29  E-value=5.1e-07  Score=73.14  Aligned_cols=40  Identities=35%  Similarity=0.480  Sum_probs=29.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ..+++++|.+|||||||+|+|.+.. ..++..||+|++...
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~   42 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKE   42 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeE
Confidence            3589999999999999999999764 567888999987643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.28  E-value=9e-07  Score=70.37  Aligned_cols=54  Identities=50%  Similarity=0.615  Sum_probs=33.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      .+++++|.+|||||||+|+|.+.....+++.|++|++.....      .+.+.+++|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   61 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS   61 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence            479999999999999999999887667889999999887654      245666666543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.27  E-value=2.9e-07  Score=77.87  Aligned_cols=85  Identities=15%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhcCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMA--------------DRNAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l----~~~L~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~  175 (275)
                      ..++++|++|+|+|+.++.+..+.  .+    .....+.|+++|+||+|+....              ..++...+..+.
T Consensus        95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A           95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            356899999999999865332221  11    1222368999999999997421              112222333344


Q ss_pred             C-CeeEEecCc-cccchhhHHHHHHHH
Q 023932          176 G-TKVIFSNGQ-LGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 g-~~vi~iSak-~g~Gi~~L~~~i~~l  200 (275)
                      + ..++++||+ ++.|++++.+.+.+.
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence            5 589999999 689999998877654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.27  E-value=3.2e-06  Score=73.48  Aligned_cols=107  Identities=17%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             ccEEEEeCCCccccccchhHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HHHh--cCCCeEEEEE
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQWL--GNRKRILVLN  155 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~-----~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l----~~~L--~~kp~IlVlN  155 (275)
                      .+++.+|+.        |.....     .+.+.+.+.+ +++++|+|+.......+.. .    ....  .++|.++|+|
T Consensus       109 ~d~iiiDtp--------G~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~N  179 (262)
T 1yrb_A          109 NDYVLIDTP--------GQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN  179 (262)
T ss_dssp             CSEEEEECC--------SSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred             CCEEEEeCC--------CccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence            589999853        433221     3344455667 9999999987544332211 0    0111  2789999999


Q ss_pred             cccCcCHHHHHHHHHH----------------------------HHHcC--CeeEEecCccccchhhHHHHHHHHhch
Q 023932          156 REDMISMADRNAWATY----------------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       156 K~Dl~~~~~~~~~~~~----------------------------~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      |+|+....+.++..++                            +.+.+  ..++++||+++.|+++|.+.|.+..+.
T Consensus       180 K~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          180 KVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            9999865432211111                            12222  378999999999999999998876654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.27  E-value=1e-06  Score=70.99  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ...+|+++|.+|||||||+|+|.+.....+.+.+|+|.....
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~   44 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERT   44 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEE
Confidence            357999999999999999999998877777788888765443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.26  E-value=9.9e-07  Score=78.22  Aligned_cols=35  Identities=26%  Similarity=0.383  Sum_probs=30.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc-----ccCCCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----~vs~~pG  250 (275)
                      ...+|+++|.||||||||||+|++....     .++..|+
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~   64 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   64 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence            4579999999999999999999988765     5677786

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.26  E-value=6e-07  Score=75.19  Aligned_cols=54  Identities=22%  Similarity=0.381  Sum_probs=31.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~  269 (275)
                      ...+++++|.+|||||||+|+|++.. ...+++.+|+|+....+.   ...+.+++|.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~   82 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY   82 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCC
Confidence            46789999999999999999999876 567789999998755433   1334455543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.26  E-value=9e-07  Score=78.17  Aligned_cols=55  Identities=29%  Similarity=0.387  Sum_probs=43.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      ..+|+++|.||||||||+|+|++.. ..++..||+|.+.....      .+.+.+++|...+
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~   63 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL   63 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence            3689999999999999999999876 58999999998875433      2466777776544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.26  E-value=1.1e-06  Score=77.42  Aligned_cols=82  Identities=21%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ..+|++|+|+|+.+...  ...+...+ . +.|+++|+||+|+....... .........+..++++||++|.|+++|.+
T Consensus        82 ~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE  159 (258)
T ss_dssp             SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred             cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence            58999999999986421  11222222 2 78999999999986442211 11122334578999999999999999999


Q ss_pred             HHHHHhc
Q 023932          196 LAKALAS  202 (275)
Q Consensus       196 ~i~~l~~  202 (275)
                      .+.+...
T Consensus       160 ~i~~~~~  166 (258)
T 3a1s_A          160 KIVEYAQ  166 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            8876543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.26  E-value=8.5e-07  Score=78.66  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             ccEEEEeCCCccccc---cchhHH-HHHHHHHHHHhhcCeEE-EEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQW---YPGHIA-KTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~---~pG~~~-~~~k~l~~~l~~aDlVI-~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl  159 (275)
                      .++..||+....-..   .+.... .....+..+++.++.+| +|+|+..+....+. .+.+.+.  ++|+++|+||+|+
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl  204 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL  204 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence            578888754321100   011111 34556667888888665 79999887665553 3555554  6899999999999


Q ss_pred             cCHHH-HHHHHHH-HHH--cC-CeeEEecCccccchhhHHHHHHH
Q 023932          160 ISMAD-RNAWATY-FAK--QG-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       160 ~~~~~-~~~~~~~-~~~--~g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .+... ..+.++. +..  .+ ..++++||++|.|+++|.+.+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          205 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             SCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             CCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            86432 1122111 001  12 35788999999999999888765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.25  E-value=9e-07  Score=70.85  Aligned_cols=39  Identities=28%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .+|++++|.+|||||||+|+|.+.....+++.+|+|++.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~   40 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR   40 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE
Confidence            368999999999999999999988877888899998763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.23  E-value=1e-06  Score=75.28  Aligned_cols=54  Identities=22%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      ....+|+++|.+|||||||+|+|++.. ..+++.+++|++.....      .+.+.+++|.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~   86 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL   86 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCC
Confidence            346899999999999999999999876 44788999999886543      3456677765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.23  E-value=5.1e-07  Score=84.75  Aligned_cols=42  Identities=36%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ..+.+++|||.||||||||+|+|++.. ..+++.|++|.+...
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~   61 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNE   61 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCcee
Confidence            456789999999999999999999876 589999999987654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.22  E-value=5.4e-07  Score=87.35  Aligned_cols=86  Identities=13%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~G  189 (275)
                      ..++++|++|+|+|++..  .....+...+.    +.|+++|+||+|+....+  .+...+.+...+..++.+||++|.|
T Consensus       117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g  194 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG  194 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred             HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence            456789999999999754  12222222222    589999999999975432  2334444445567799999999999


Q ss_pred             hhhHHHHHHHHhch
Q 023932          190 TMKLSRLAKALASD  203 (275)
Q Consensus       190 i~~L~~~i~~l~~~  203 (275)
                      +++|.+.+.+....
T Consensus       195 i~eL~~~l~~~~~~  208 (535)
T 3dpu_A          195 VESIAKSLKSAVLH  208 (535)
T ss_dssp             CTTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999988776543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.18  E-value=2.7e-06  Score=73.38  Aligned_cols=91  Identities=10%  Similarity=-0.003  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcccCcCHHHHH--------HHHHHHHHc
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNREDMISMADRN--------AWATYFAKQ  175 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~Dl~~~~~~~--------~~~~~~~~~  175 (275)
                      .+.+......+|++|+|+|+... ...+......+.       .+|+++|+||+|+.......        ...+...+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            33333444567999999998743 333333332221       35999999999997654333        222333444


Q ss_pred             CCeeEEecCcc-----ccchhhHHHHHHHHhc
Q 023932          176 GTKVIFSNGQL-----GMGTMKLSRLAKALAS  202 (275)
Q Consensus       176 g~~vi~iSak~-----g~Gi~~L~~~i~~l~~  202 (275)
                      +..++.++...     ..++.+|.+.+..+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            55666676553     3567777777666553

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.18  E-value=9.1e-06  Score=72.64  Aligned_cols=116  Identities=9%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             ccEEEEeCCCccccc---cc-hhHHHHHHHHHHHHhhcCeEEEEEeC-CCCCCCCc-HHHHHHhc--CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~---~p-G~~~~~~k~l~~~l~~aDlVI~VvDa-r~p~s~~d-~~l~~~L~--~kp~IlVlNK~Dl  159 (275)
                      .++..||+....-..   .+ +........+..+++.+|++++|+|+ .......+ ..+.+++.  ++|+++|+||+|+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl  210 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL  210 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence            568888754321100   00 11123556677889999999999997 44444444 36666665  7899999999999


Q ss_pred             cCHHHHHHHHHHHHH----cCCe---eEEecCcc---ccchhhHHHHHHHHhchhh
Q 023932          160 ISMADRNAWATYFAK----QGTK---VIFSNGQL---GMGTMKLSRLAKALASDVN  205 (275)
Q Consensus       160 ~~~~~~~~~~~~~~~----~g~~---vi~iSak~---g~Gi~~L~~~i~~l~~~~~  205 (275)
                      .....  ...+.+..    .+..   ++.+|+.+   +.|+.++.+.+.++.+...
T Consensus       211 ~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          211 MDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             SCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             CCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            85433  11122222    1123   34455555   7888888888877776543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.18  E-value=9.7e-07  Score=72.38  Aligned_cols=40  Identities=35%  Similarity=0.480  Sum_probs=34.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ..+++++|.+|||||||+|+|.+.. ..++..||+|.+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~   46 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKE   46 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceE
Confidence            4689999999999999999999765 667888999987643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.15  E-value=3e-06  Score=69.81  Aligned_cols=106  Identities=16%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh---cCCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL---GNRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d---~~l~~~L---~~kp~IlVlNK~Dl~~  161 (275)
                      ..+..||+        +|. .+.......++..+|++++|+|..++..+.+   ..+..+.   .+.|+++|.||+|+..
T Consensus        56 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  126 (184)
T 2zej_A           56 LVLNVWDF--------AGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD  126 (184)
T ss_dssp             CEEEEEEE--------CSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred             eEEEEEec--------CCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence            35667764        343 2233333456788999999999876532111   1111111   2678999999999986


Q ss_pred             HHHHH----HHHHHHH-HcCCe----eEEecCcccc-chhhHHHHHHHHhc
Q 023932          162 MADRN----AWATYFA-KQGTK----VIFSNGQLGM-GTMKLSRLAKALAS  202 (275)
Q Consensus       162 ~~~~~----~~~~~~~-~~g~~----vi~iSak~g~-Gi~~L~~~i~~l~~  202 (275)
                      .....    +....+. +.+..    ++++||+++. |+++|.+.|.+...
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          127 EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL  177 (184)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence            54332    1222222 23444    8899999996 99988887765543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.15  E-value=1.9e-06  Score=76.20  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=34.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCC-------CCcccccceEEE--------EEEeecccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKYVS--------QFFLLKYHQKC  270 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~-------~pGtTr~~~~v~--------~~~~~~~~~~~  270 (275)
                      ..+|+++|.+|+|||||+|+|++.+......       .++++.+.....        .+.+.+++|+.
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~   76 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG   76 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence            5789999999999999999999887655443       444444443332        35677787763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.14  E-value=2.5e-06  Score=69.84  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ..+|++++|+|+...  .....+...+ . +.|+++|+||+|+....... ...+.....+..++++||+++.|++++.+
T Consensus        84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (188)
T 2wjg_A           84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK  161 (188)
T ss_dssp             HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred             cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHH
Confidence            459999999998642  1111122222 2 68999999999986432111 11122233467899999999999999998


Q ss_pred             HHHHHhch
Q 023932          196 LAKALASD  203 (275)
Q Consensus       196 ~i~~l~~~  203 (275)
                      .+.+...+
T Consensus       162 ~i~~~~~~  169 (188)
T 2wjg_A          162 AISIAVKD  169 (188)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            88776554

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.14  E-value=1.7e-06  Score=76.40  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=56.4

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-C-CCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-N-RKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~-kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~  194 (275)
                      .++|++++|+|+.+..  .+..+...+ . + .|+++|+||+|+....... .........+..++++||++|.|+++|.
T Consensus        80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~  157 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK  157 (271)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred             cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence            7899999999998641  111221112 2 5 8999999999986543211 1112223457889999999999999999


Q ss_pred             HHHHHHhc
Q 023932          195 RLAKALAS  202 (275)
Q Consensus       195 ~~i~~l~~  202 (275)
                      +.+.....
T Consensus       158 ~~i~~~~~  165 (271)
T 3k53_A          158 RMIALMAE  165 (271)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98877654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.14  E-value=2.5e-07  Score=91.11  Aligned_cols=102  Identities=14%  Similarity=0.099  Sum_probs=59.1

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcHHHHHHhc--CCC-eEEEEEcccCcC--HHHHH-
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWLG--NRK-RILVLNREDMIS--MADRN-  166 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~--~~~~~-  166 (275)
                      +-+.|||. .+.+.+...+..+|++|+|+|++.+.       .........++.  +.| +|+|+||+|+..  ..... 
T Consensus       259 iiDTPGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~  337 (592)
T 3mca_A          259 IGDAPGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE  337 (592)
T ss_dssp             CCEEESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred             EEECCChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHH
Confidence            44568873 33333444568899999999998753       333333333322  565 888999999975  32222 


Q ss_pred             ---HHHHHH-HHcCC-----eeEEecCccccchh--------------hHHHHHHHHhc
Q 023932          167 ---AWATYF-AKQGT-----KVIFSNGQLGMGTM--------------KLSRLAKALAS  202 (275)
Q Consensus       167 ---~~~~~~-~~~g~-----~vi~iSak~g~Gi~--------------~L~~~i~~l~~  202 (275)
                         +...++ ...++     .++++||++|.|+.              .|++.|..+.+
T Consensus       338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence               223333 33343     68999999999997              68887766543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.12  E-value=5.5e-06  Score=74.69  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-------cCCCeEEEEEcccCcCHHHH--------HHHHHHHHHcC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-------GNRKRILVLNREDMISMADR--------NAWATYFAKQG  176 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-------~~kp~IlVlNK~Dl~~~~~~--------~~~~~~~~~~g  176 (275)
                      .....++++|++|+|+|+.++.+..+. .+..++       .+.|+++|+||+|+......        ++..++....|
T Consensus        73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A           73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence            345667899999999999876443332 111111       27899999999999874332        22223333445


Q ss_pred             ---CeeEEecCccccchhhHH
Q 023932          177 ---TKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       177 ---~~vi~iSak~g~Gi~~L~  194 (275)
                         ..++.+||++ .|+.++.
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~  172 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAW  172 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHH
T ss_pred             CCCeEEEEeeecC-ChHHHHH
Confidence               5889999998 5554443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.11  E-value=1.3e-06  Score=72.76  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=28.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..+|+++|.||||||||+|++.+.....+++.+.++.+.
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~   44 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT   44 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE
Confidence            579999999999999999999975544455556566554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.11  E-value=2.6e-06  Score=75.81  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=54.8

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      .++|++|+|+|+.+..  ....+...+.  +.|+++|+||+|+....... .........+..++++||++|.|+++|.+
T Consensus        79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  156 (272)
T 3b1v_A           79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK  156 (272)
T ss_dssp             TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred             CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence            3699999999997631  1122222222  78999999999986432111 11112223477899999999999999999


Q ss_pred             HHHHHh
Q 023932          196 LAKALA  201 (275)
Q Consensus       196 ~i~~l~  201 (275)
                      .+.+..
T Consensus       157 ~i~~~~  162 (272)
T 3b1v_A          157 KAAHTT  162 (272)
T ss_dssp             HHHHSC
T ss_pred             HHHHHH
Confidence            887654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.11  E-value=2e-06  Score=69.75  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +..++|+++|.+|||||||+|+|++.........|.++.+..
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~   49 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR   49 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE
Confidence            456899999999999999999999877554555566665543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.10  E-value=2.7e-06  Score=78.38  Aligned_cols=24  Identities=42%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ....++|+|+||||||||+|+|++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999985

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.09  E-value=4e-06  Score=67.04  Aligned_cols=44  Identities=27%  Similarity=0.392  Sum_probs=34.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~  259 (275)
                      +.++++++|.+|||||||+|+|++.. .....+.+|+|.....+.
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~   49 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ   49 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence            45799999999999999999999876 334567778776655443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.09  E-value=3.4e-06  Score=69.46  Aligned_cols=66  Identities=15%  Similarity=0.006  Sum_probs=36.4

Q ss_pred             ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccc
Q 023932          185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVL  255 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~  255 (275)
                      .....+..+.+.+.++......     +......+|+++|.+|||||||+|+|.+...  ..++..|++|.+.
T Consensus        21 ~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~   88 (193)
T 2ged_A           21 INKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY   88 (193)
T ss_dssp             TTTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence            3455677777777666543221     1124567999999999999999999998652  2235566666654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.09  E-value=2.1e-06  Score=68.75  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=26.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .++|+++|.+|||||||+|+|++.. ......|.++.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~   41 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFK   41 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEE
Confidence            5789999999999999999999765 34445565555543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.09  E-value=5.5e-06  Score=70.80  Aligned_cols=84  Identities=13%  Similarity=0.020  Sum_probs=54.7

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcH-HHHH-Hh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcccc
Q 023932          118 LKLMDVVIEVRDARIPLSTTHP-LMDQ-WL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~-~l~~-~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      ++.+|++|+|+|..+..+.... .+.. +.     .+.|+++|.||+|+.....  .++...+....+..++++||++|.
T Consensus       109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~  188 (211)
T 2g3y_A          109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  188 (211)
T ss_dssp             CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            4678999999998764322211 1211 11     1579999999999964311  122222223446789999999999


Q ss_pred             chhhHHHHHHHHh
Q 023932          189 GTMKLSRLAKALA  201 (275)
Q Consensus       189 Gi~~L~~~i~~l~  201 (275)
                      |++++.+.+.+..
T Consensus       189 ~v~elf~~l~~~i  201 (211)
T 2g3y_A          189 NVKELFEGIVRQV  201 (211)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999988776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.07  E-value=2.1e-06  Score=69.47  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..++|+++|.+|||||||+|+|++.. ......|++|.+..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~   47 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFK   47 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEE
Confidence            46799999999999999999999765 33555666665543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.06  E-value=5.3e-08  Score=94.06  Aligned_cols=95  Identities=15%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH-------
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-------  173 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~-------  173 (275)
                      .|||. .+.......+..+|++|+|+|+.++......+....+.  +.|+++++||+|+..... +.....+.       
T Consensus        58 TPGhe-~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~  135 (501)
T 1zo1_I           58 TPGHA-AFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPE  135 (501)
T ss_dssp             CCTTT-CCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTT
T ss_pred             CCCcH-HHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHH
Confidence            56662 22222223467899999999998876555444444433  789999999999964311 00000110       


Q ss_pred             HcC--CeeEEecCccccchhhHHHHHHH
Q 023932          174 KQG--TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..+  ..++++||++|.|+++|.+.+..
T Consensus       136 ~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          136 EWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            111  47899999999999999988753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.05  E-value=4.2e-06  Score=67.66  Aligned_cols=42  Identities=19%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      .+..+|+++|.+|||||||+|+|++.. ...+..|++|.+...
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~   47 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGA   47 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeE
Confidence            456799999999999999999999765 556667888877643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.04  E-value=5.7e-06  Score=68.43  Aligned_cols=53  Identities=25%  Similarity=0.457  Sum_probs=39.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccceEEE------EEEeecccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKYVS------QFFLLKYHQ  268 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~~v~------~~~~~~~~~  268 (275)
                      ..++|+++|.+|||||||||+|++... ..+.+.+|+|.....+.      .+.+.+++|
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G   81 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG   81 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence            468999999999999999999997663 35778888887665443      244455554

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.03  E-value=5.6e-06  Score=83.54  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             HHHHHHHHH-hhcCeEEEEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccCcCHHHH-HHHHHH-HH--HcC-CeeE
Q 023932          110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKVI  180 (275)
Q Consensus       110 ~~k~l~~~l-~~aDlVI~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl~~~~~~-~~~~~~-~~--~~g-~~vi  180 (275)
                      ..+.+.+++ +.+|+|++|+|++.+....+. .+...+.  ++|+++|+||+|+++.... ...... ..  +.+ ..++
T Consensus       176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV  255 (772)
T 3zvr_A          176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV  255 (772)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred             HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence            334445555 578999999999998877776 5777766  6899999999999865431 111110 00  012 3678


Q ss_pred             EecCccccchhhHHHHHHH
Q 023932          181 FSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~  199 (275)
                      ++||++|.|+++|.+.+.+
T Consensus       256 ~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          256 NRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             CCCCEESSSSEEHHHHHHH
T ss_pred             EecccccccchhHHHHHHH
Confidence            9999999999999888775

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.03  E-value=2.3e-06  Score=78.67  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc-----ccCCCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG  250 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----~vs~~pG  250 (275)
                      ..+|+++|.||||||||||+|++.+..     .++..|+
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~   69 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL   69 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence            468999999999999999999987755     5667787

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.02  E-value=3.3e-06  Score=69.48  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..++|+++|.+|||||||+|+|++.. ......|++|.+..
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~   54 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFK   54 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEE
Confidence            46799999999999999999999765 44455566665543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.02  E-value=4e-06  Score=71.65  Aligned_cols=40  Identities=20%  Similarity=0.115  Sum_probs=29.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...||+++|.+|||||||+|++.+.....++..+.++.+.
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~   75 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT   75 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee
Confidence            3579999999999999999999976544455555565554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.02  E-value=3.5e-06  Score=68.67  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||+|+|++..  .....++||.+.
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~   40 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDS   40 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchhe
Confidence            35799999999999999999999765  344556666544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.02  E-value=9.4e-06  Score=76.61  Aligned_cols=89  Identities=25%  Similarity=0.306  Sum_probs=63.1

Q ss_pred             HHHHhhcCeEEEEEeCC-CCCCCCc---HHHHHH---hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932          115 KDQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar-~p~s~~d---~~l~~~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      .+.++.++.+++|+|+. .+.....   .++..+   +..+|.++|+||+|+........+.+.+.+.+..++++||+++
T Consensus       230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g  309 (416)
T 1udx_A          230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG  309 (416)
T ss_dssp             HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence            34568899999999985 2211111   122222   2268999999999998764444555555556778999999999


Q ss_pred             cchhhHHHHHHHHhch
Q 023932          188 MGTMKLSRLAKALASD  203 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~  203 (275)
                      .|+++|.+.|.++...
T Consensus       310 ~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          310 AGLPALKEALHALVRS  325 (416)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999988776654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.02  E-value=4.2e-06  Score=83.83  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGt  251 (275)
                      ..++|+|+|.+|+|||||||+|++.+.+.+++.|+|
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T  103 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT  103 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence            367999999999999999999999998899999988

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.01  E-value=4.5e-06  Score=75.30  Aligned_cols=43  Identities=19%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ..||+++|.||||||||+|+|++.....+++.+|+|++.....
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~   45 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH   45 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE
Confidence            4789999999999999999999876677888999999987654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.00  E-value=4.4e-06  Score=67.34  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=28.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..+|+++|.+|||||||+|+|++.. ......|.++.+.
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~   51 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDF   51 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEE
Confidence            4799999999999999999999765 3334455555444

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.99  E-value=2e-05  Score=78.85  Aligned_cols=105  Identities=12%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             cEEEEeCCCccccccchhHHH--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-HHhc--CCCeEEEEEcccCcCHH
Q 023932           89 DLYYWTKSLRPVQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QWLG--NRKRILVLNREDMISMA  163 (275)
Q Consensus        89 d~~~~~~~~~~i~~~pG~~~~--~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~-~~L~--~kp~IlVlNK~Dl~~~~  163 (275)
                      ++..||        .||....  ....+..+++++|+||+|+|+..+.+..+..+. ..+.  ++|+++|+||+|+....
T Consensus       175 ~l~LiD--------TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~  246 (695)
T 2j69_A          175 GIEIVD--------SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES  246 (695)
T ss_dssp             TEEEEE--------CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred             CeEEEE--------CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence            466666        4665332  345666788999999999999887665554433 3444  67899999999997542


Q ss_pred             --------HHHH----HHHH----HHHc---------CCeeEEecCc--------------cccchhhHHHHHHHHh
Q 023932          164 --------DRNA----WATY----FAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKALA  201 (275)
Q Consensus       164 --------~~~~----~~~~----~~~~---------g~~vi~iSak--------------~g~Gi~~L~~~i~~l~  201 (275)
                              +.++    ....    +...         ...++++||+              ++.|+++|.+.+.++.
T Consensus       247 ~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l  323 (695)
T 2j69_A          247 LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL  323 (695)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred             ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence                    1111    1111    1111         1358999999              9999999988776654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.98  E-value=5.3e-06  Score=69.27  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..++|+++|.+|||||||||+|++.. ......|.++.+..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~   58 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFK   58 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEE
Confidence            46899999999999999999999765 34455566665543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.98  E-value=5.6e-06  Score=66.01  Aligned_cols=26  Identities=42%  Similarity=0.515  Sum_probs=23.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++++++|.+|||||||+|+|++..
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence            35799999999999999999999764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.98  E-value=5.6e-06  Score=74.02  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=27.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc-----cccCCCC---ccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRP---GVTRV  254 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~-----~~vs~~p---GtTr~  254 (275)
                      ..+|+|+|.+|||||||||+|++...     ..++..|   .+|++
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~   69 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHL   69 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEEC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeC
Confidence            46899999999999999999998876     4455667   55554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.98  E-value=6.9e-06  Score=67.18  Aligned_cols=40  Identities=20%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      .+..+|+++|.+|||||||+|+|.+.......+..|++..
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~   58 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE   58 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE
Confidence            3468999999999999999999998776667777776543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.97  E-value=8e-07  Score=83.40  Aligned_cols=49  Identities=18%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       147 ~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      .+|+++|+||+|+.......++.+.+...+..++++||+.+.|+.+|.+
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            5899999999999854444455555544466899999999998876644

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.96  E-value=3.2e-06  Score=77.82  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=34.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      .+|+++|.||||||||||+|++.+ ..+++.|++|.+...
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~  197 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNL  197 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCE
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceE
Confidence            368999999999999999999765 677899999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.96  E-value=5.3e-06  Score=66.42  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      ..++|+++|.+|||||||+|+|++.. ......|.++.+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~   42 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGAS   42 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceE
Confidence            46799999999999999999999764 333334444433

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.95  E-value=8.9e-06  Score=65.13  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=28.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGt  251 (275)
                      ....+|+++|.+|||||||+|+|.+.......+..|.
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~   41 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF   41 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCcc
Confidence            3468999999999999999999997765444444443

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.94  E-value=8.6e-06  Score=66.19  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      ...+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~   54 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV   54 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce
Confidence            46899999999999999999999766556666666543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.94  E-value=5.3e-06  Score=68.18  Aligned_cols=38  Identities=26%  Similarity=0.501  Sum_probs=31.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      ...+++++|.+|||||||+|+|.+.....+.+.+|++.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~   52 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI   52 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE
Confidence            46799999999999999999999876666667777554

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.93  E-value=6.8e-06  Score=65.25  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+|+++|.+|||||||+|+|++..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCc
Confidence            4789999999999999999999765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.93  E-value=7e-06  Score=66.90  Aligned_cols=39  Identities=13%  Similarity=0.284  Sum_probs=28.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      +..++|+++|.+|||||||+|+|++... .....|.++.+
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~   46 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVE   46 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceE
Confidence            3468999999999999999999997653 33334444433

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.93  E-value=1.6e-05  Score=77.54  Aligned_cols=71  Identities=14%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      -+.|.+....+=+.||| ..+..++...++-+|.+|+|||+..+....-..+.+.+.  +.|+++++||+|...
T Consensus        94 ~~~~~~~~iNlIDTPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           94 QFPYRDRVVNLLDTPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEEETTEEEEEECCCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred             EEEECCEEEEEEeCCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence            34565554455578999 678888889999999999999999887766656655544  899999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.93  E-value=2.1e-05  Score=71.92  Aligned_cols=102  Identities=11%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHH
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRN  166 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~  166 (275)
                      ..++.++|+        ||.....    ......+|++++|+|+..+.....  +.....+.|.++|+||+|+.......
T Consensus       148 ~~~i~liDT--------pG~~~~~----~~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~  213 (341)
T 2p67_A          148 GYDVVIVET--------VGVGQSE----TEVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVA  213 (341)
T ss_dssp             TCSEEEEEE--------ECCTTHH----HHHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHH
T ss_pred             CCCEEEEeC--------CCccchH----HHHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHH
Confidence            457888874        4432111    124589999999999865422111  10011246899999999998754333


Q ss_pred             HHHHHHH----Hc-------CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          167 AWATYFA----KQ-------GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       167 ~~~~~~~----~~-------g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ...+.+.    ..       ...++++||++|.|+++|.+.|.+...
T Consensus       214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            3222222    11       246789999999999999988876543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.93  E-value=3.9e-06  Score=70.08  Aligned_cols=40  Identities=23%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ...+|+++|.+|||||||||+|.+.. ......|++|.+..
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~   61 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTY   61 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceE
Confidence            45799999999999999999997543 22345677776654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.92  E-value=2.3e-05  Score=78.10  Aligned_cols=58  Identities=16%  Similarity=0.065  Sum_probs=44.3

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      +.|||. .+...+...++.+|.+++|+|+..+.......+...+.  +.|+++|+||+|+.
T Consensus        80 DTpG~~-~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           80 DAPGYG-DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             ECCCSG-GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             eCCCcc-chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence            458873 45567778899999999999998776554444444443  78999999999986

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.92  E-value=5e-06  Score=67.11  Aligned_cols=26  Identities=35%  Similarity=0.535  Sum_probs=23.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+|+++|.+|||||||+|+|++..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence            35799999999999999999999765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.91  E-value=9.2e-06  Score=70.79  Aligned_cols=91  Identities=11%  Similarity=0.027  Sum_probs=58.9

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEE-cccCcCHHHHHH---------HHHHHH
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLN-REDMISMADRNA---------WATYFA  173 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlN-K~Dl~~~~~~~~---------~~~~~~  173 (275)
                      .+.+...+..+|++|+|+|+.. +...+..+..++.       .+|.++|+| |+|+.... ...         ......
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence            4445556788999999999975 3333333333332       458888888 99997431 222         111222


Q ss_pred             HcCC-----eeEEecCccccchhhHHHHHHHHhch
Q 023932          174 KQGT-----KVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       174 ~~g~-----~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ..+.     ..+++||+++.|+++|.+.|.++...
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            2221     12788999999999999988877654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.91  E-value=9.9e-06  Score=66.47  Aligned_cols=54  Identities=17%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS--QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~--~~~~~~~~~~  269 (275)
                      ...+|+++|.+|||||||+|+|.+.......+..|.+.....+.  .+.+.+++|.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~   70 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ   70 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC-
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCC
Confidence            35799999999999999999999766556666666443322221  2344555543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.90  E-value=2.9e-05  Score=77.68  Aligned_cols=59  Identities=20%  Similarity=0.230  Sum_probs=44.5

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|||. .+.......++.+|.+|+|+|+..+.......+...+.  +.|+++|+||+|+..
T Consensus        83 DTPG~~-df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           83 DTPGHV-DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCCSST-TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred             ECcCcc-chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence            367873 45566777889999999999999876655444444333  789999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.90  E-value=9.4e-06  Score=65.50  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...+|+++|.+|||||||+|+|++..  ..+..++||.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~   45 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDS   45 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCce
Confidence            45799999999999999999999764  234455565543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.89  E-value=8.1e-06  Score=67.82  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=28.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||+|+|++... .....|.++.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~   45 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADF   45 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceE
Confidence            457999999999999999999997653 233334444433

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.88  E-value=1.1e-05  Score=65.89  Aligned_cols=37  Identities=22%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ...+|+++|.+|||||||+|+|++.......+..|.+
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~   53 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN   53 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc
Confidence            3679999999999999999999987644444444543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.88  E-value=3.9e-05  Score=70.54  Aligned_cols=84  Identities=10%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHH-----------cCCeeEEecCc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK-----------QGTKVIFSNGQ  185 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----------~g~~vi~iSak  185 (275)
                      ..+.+|++++|+|+..+...  ..+...+...+.++|+||+|+.+..........+..           ....++++||+
T Consensus       184 l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~  261 (349)
T 2www_A          184 VADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR  261 (349)
T ss_dssp             HHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTT
T ss_pred             HHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecC
Confidence            46799999999998765321  112222336789999999999764332221222211           12468899999


Q ss_pred             cccchhhHHHHHHHHhc
Q 023932          186 LGMGTMKLSRLAKALAS  202 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~  202 (275)
                      +|.|+++|.+.|.++..
T Consensus       262 ~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          262 SGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999998877653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.88  E-value=8.5e-06  Score=64.95  Aligned_cols=41  Identities=22%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~  257 (275)
                      .++|+++|.+|||||||+|+|++.... ...+..|++.....
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~   44 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR   44 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE
Confidence            468999999999999999999976532 34455565554443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.88  E-value=9.9e-06  Score=64.23  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+|+++|.+|||||||+|+|++..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCC
Confidence            4689999999999999999999765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.87  E-value=1.2e-05  Score=67.06  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=29.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||||+|++.. ......|.++.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~   45 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDF   45 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccccee
Confidence            45799999999999999999999765 3334445444443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.87  E-value=2.6e-05  Score=64.78  Aligned_cols=85  Identities=13%  Similarity=-0.003  Sum_probs=54.8

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~-~l~----~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      +++.+|.+++|+|..+..+.... .+.    ...  .+.|+++|.||+|+.....  .++...+....+..++.+||++|
T Consensus        77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g  156 (192)
T 2cjw_A           77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ  156 (192)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence            45779999999998764322211 111    111  1679999999999964311  11211222334567899999999


Q ss_pred             cchhhHHHHHHHHh
Q 023932          188 MGTMKLSRLAKALA  201 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~  201 (275)
                      .|++++.+.+.+..
T Consensus       157 ~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          157 HNVKELFEGIVRQV  170 (192)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999988766543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.87  E-value=8e-06  Score=68.19  Aligned_cols=39  Identities=13%  Similarity=0.240  Sum_probs=23.7

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      +..++|+++|.+|||||||||+|++.. ......|.++.+
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~   61 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVE   61 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-------------CC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccce
Confidence            456899999999999999999999765 333333444433

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.87  E-value=1.4e-05  Score=66.26  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      ..+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~   59 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS   59 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe
Confidence            4689999999999999999999877655666555543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.86  E-value=9.7e-06  Score=79.11  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=34.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~  254 (275)
                      ...+|+|+|.+|||||||||+|++.+..  .+++.|+||+.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~  104 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF  104 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence            4579999999999999999999998755  68999999774

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.86  E-value=1.4e-05  Score=65.62  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=27.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      ...+|+++|.+|||||||+|+|.+.......+..|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~   55 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG   55 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc
Confidence            46799999999999999999998766554444444

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.86  E-value=1.4e-05  Score=66.69  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      +..+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~   61 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS   61 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee
Confidence            35689999999999999999999876555556666654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.86  E-value=1.1e-05  Score=65.53  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+|+++|.+|||||||+|+|++..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            5799999999999999999999654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.85  E-value=1.1e-05  Score=66.03  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||||+|++..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCc
Confidence            46899999999999999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.85  E-value=1.1e-05  Score=65.48  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=28.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      ...+|+++|.+|||||||+|+|++...  ....++|+.+
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~   53 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKAD   53 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccce
Confidence            357999999999999999999997652  3334445443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.84  E-value=1.2e-05  Score=65.12  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ..++|+++|.+|||||||+|+|++...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~   37 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQF   37 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCC
Confidence            357999999999999999999997653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.84  E-value=1.3e-05  Score=65.88  Aligned_cols=26  Identities=35%  Similarity=0.525  Sum_probs=23.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|++..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence            45899999999999999999999765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.84  E-value=1.1e-05  Score=66.79  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=28.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...+|+|+|.+|||||||+|+|++...  ....++|+.+.
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~   50 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADS   50 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceE
Confidence            357999999999999999999997652  33445555443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.83  E-value=1.4e-05  Score=65.60  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccce
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK  256 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~  256 (275)
                      +..++|+++|.+|||||||+|+|++.... ...+..|++....
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~   62 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK   62 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE
Confidence            44689999999999999999999976532 2344455555443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.83  E-value=1e-05  Score=64.80  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ++|+++|.+|||||||+|+|.+....
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~   28 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC---
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCc
Confidence            68999999999999999999865433

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.81  E-value=1.1e-05  Score=68.26  Aligned_cols=45  Identities=18%  Similarity=0.127  Sum_probs=35.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHh-cCCccccCCCCcccccceEEE
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll-~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ...++|+++|.+|||||||+|+++ +......++.+|+|+....+.
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~   58 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH   58 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE
Confidence            346899999999999999999954 444456788889988876553

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.81  E-value=7.6e-06  Score=68.85  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhh----cCeEEEEEeCC-CCCCCC--cHHHHHHh--------cCCCeEE
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL----MDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRIL  152 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~----aDlVI~VvDar-~p~s~~--d~~l~~~L--------~~kp~Il  152 (275)
                      .++..||        .||+. ........++..    +|++|+|+|+. ++.+..  ...+.+++        .+.|+++
T Consensus        55 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il  125 (218)
T 1nrj_B           55 SGVTLVD--------FPGHV-KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI  125 (218)
T ss_dssp             SSCEEEE--------CCCCG-GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred             ceEEEEE--------CCCcH-HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence            3566776        45542 222333344444    99999999998 432221  12232322        2679999


Q ss_pred             EEEcccCcCHHHHHHHH-------HHH-HHcCCeeEEecCccccc
Q 023932          153 VLNREDMISMADRNAWA-------TYF-AKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       153 VlNK~Dl~~~~~~~~~~-------~~~-~~~g~~vi~iSak~g~G  189 (275)
                      |+||+|+.......++.       ..+ ...+..++.+||++|.+
T Consensus       126 v~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          126 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             EEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             EEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            99999997643222111       112 22235678899998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.81  E-value=1.8e-05  Score=63.13  Aligned_cols=25  Identities=40%  Similarity=0.567  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .++|+++|.+|||||||+|+|++..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~   27 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGT   27 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4789999999999999999999754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.81  E-value=1.5e-05  Score=65.61  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=25.2

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      +..++|+|+|.+|||||||||+|++....
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~   51 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFS   51 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            44689999999999999999999986644

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.81  E-value=2.8e-05  Score=65.56  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=65.4

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hcCCCeEEEEEcccCcCHH
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMA  163 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~--L~~kp~IlVlNK~Dl~~~~  163 (275)
                      ...|++.+++...  ...|++..          ...+.+++|+|+..+..    ....+  ..+.|.++|+||+|+.+..
T Consensus       107 ~~~d~iiidt~G~--~~~~~~~~----------~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~~~  170 (221)
T 2wsm_A          107 SDCDLLLIENVGN--LICPVDFD----------LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAEAV  170 (221)
T ss_dssp             TTCSEEEEEEEEB--SSGGGGCC----------CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHHHH
T ss_pred             CCCCEEEEeCCCC--CCCCchhc----------cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCcch
Confidence            3568888875542  11233310          24578999999976532    11111  1267999999999997542


Q ss_pred             --HHHHHHHHHHHc--CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          164 --DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       164 --~~~~~~~~~~~~--g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                        ..++..+.+.+.  +..++++||++|.|+++|.+.|.+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence              334444444443  357899999999999999998876543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.80  E-value=6.9e-06  Score=77.71  Aligned_cols=56  Identities=25%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~~  271 (275)
                      ...+|+|+|.+|+|||||+|+|++.....+++.+|+|.+.....       .+.+.+++|.-+
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d   95 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD   95 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence            35789999999999999999999988778899999999987655       245677777543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.79  E-value=9.9e-06  Score=67.06  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=22.9

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+++|.+|||||||+|+|++..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCC
Confidence            346899999999999999999999765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.79  E-value=1.4e-05  Score=63.51  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++++|.+|||||||+|+|++..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4689999999999999999999754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.77  E-value=1.9e-05  Score=65.06  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=27.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcccc--CCCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVT  252 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v--s~~pGtT  252 (275)
                      ...+|+++|.+|||||||+|+|++.....+  .+..|.+
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~   54 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN   54 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee
Confidence            457999999999999999999998775554  5555544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.77  E-value=3.3e-05  Score=77.36  Aligned_cols=59  Identities=22%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|||. .+...+...++.+|.+|+|+|+..+.......+...+.  +.|+++|+||+|+..
T Consensus        81 DTPG~~-df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHV-DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCS-SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred             ECcCCc-chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence            357773 34455667889999999999998876655555544443  789999999999975

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.77  E-value=0.00013  Score=73.25  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.||| ..+...+...++.+|.+|+|+|+..+.......+...+.  +.|+++|+||+|+..
T Consensus        88 DTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence            36888 446667778899999999999999876544444444332  789999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.77  E-value=1.8e-05  Score=65.25  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      ..++|+++|.+|||||||+|+|++...  ....+.|+.+
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~   56 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLED   56 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccc
Confidence            458999999999999999999997652  2334445443

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.77  E-value=1.6e-05  Score=63.24  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccc-cCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~-vs~~pGtTr~~~  256 (275)
                      ..++|+++|.+|||||||+|+|++..... ..+..|++....
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~   46 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ   46 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE
Confidence            35799999999999999999999755332 334556555443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.77  E-value=1.7e-05  Score=65.05  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV  254 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~  254 (275)
                      .++|+++|.+|||||||+|+|++...  ....++|+.+
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~   56 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIED   56 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCE
T ss_pred             eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccce
Confidence            47999999999999999999997652  2334445543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.77  E-value=1.9e-05  Score=65.71  Aligned_cols=28  Identities=32%  Similarity=0.553  Sum_probs=24.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..++|+++|.+|||||||+|+|++....
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~   50 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS   50 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4689999999999999999999986633

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.76  E-value=1.8e-05  Score=63.81  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+|+++|.+|||||||+|+|++..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence            35799999999999999999999765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.76  E-value=2e-05  Score=63.41  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=24.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ...+|+++|.+|||||||+|+|++...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~   40 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKF   40 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            468999999999999999999997653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.76  E-value=1.9e-05  Score=66.38  Aligned_cols=27  Identities=22%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +...+|+++|.+|||||||+|+|++..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence            346899999999999999999999764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.76  E-value=2.5e-05  Score=64.91  Aligned_cols=41  Identities=32%  Similarity=0.389  Sum_probs=25.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~  256 (275)
                      ..++|+++|.+|||||||+|+|++... ....+..|++....
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~   68 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK   68 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE
Confidence            468999999999999999999997652 34455566655443

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.75  E-value=2.3e-05  Score=61.87  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++++|.+|||||||+|+|++..
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCc
Confidence            3689999999999999999999764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.75  E-value=1.8e-05  Score=64.79  Aligned_cols=42  Identities=31%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKYV  258 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~v  258 (275)
                      .++|+++|.+|||||||||+|++.... ...+..|++.....+
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~   57 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI   57 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEE
Confidence            579999999999999999999976532 334445555544433

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.75  E-value=1.5e-05  Score=66.07  Aligned_cols=39  Identities=23%  Similarity=0.152  Sum_probs=25.4

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...++|+++|.+|||||||+|+|++..  .....++||.+.
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~   56 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDN   56 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccce
Confidence            346899999999999999999999765  334555666543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.74  E-value=3.1e-05  Score=75.21  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=44.6

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM  162 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~  162 (275)
                      .||| ..+...+...+..+|.+|+|+|+..+.......+...+.  +.|+++|+||+|+...
T Consensus        89 TPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             CCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            5777 334456667889999999999999876554445555544  7899999999999754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.74  E-value=2.6e-05  Score=64.70  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKY  257 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~  257 (275)
                      ..++|+++|.+|||||||+|+|++.... ...+..|++.....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~   49 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT   49 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEE
Confidence            4579999999999999999999976532 23344455544433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.73  E-value=4e-06  Score=68.35  Aligned_cols=39  Identities=13%  Similarity=0.153  Sum_probs=16.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||+|+|.+.. ......|+++.+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~   45 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDF   45 (183)
T ss_dssp             EEEEEEEECCCCC-----------------CHHHHHCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccccee
Confidence            45799999999999999999999654 3344445555444

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.73  E-value=2.2e-05  Score=64.56  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=23.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ....+|+++|.+|||||||+|+|.+..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            346899999999999999999999765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.73  E-value=1.9e-05  Score=65.05  Aligned_cols=28  Identities=29%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ...++|+++|.+|||||||+|+|++...
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~   46 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRF   46 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            4468999999999999999999997653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.72  E-value=1.8e-05  Score=78.47  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932           91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS  161 (275)
Q Consensus        91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~  161 (275)
                      +.|.+....+=+.||| ..+..++...++-+|.+|+|||+..+....-..+.+.+.  +.|.|+++||+|...
T Consensus        62 ~~~~~~~iNlIDTPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           62 FQWENTKVNIIDTPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG  133 (638)
T ss_dssp             CBCSSCBCCCEECCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred             EEECCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence            3454444455577999 678888889999999999999999988777666666554  889999999999753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.71  E-value=2.7e-05  Score=65.20  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||+|+|++...  ....++||.+.
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~   66 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDN   66 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEE
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecce
Confidence            468999999999999999999996542  34445555543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.70  E-value=1.5e-05  Score=65.75  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..+||+++|.+|||||||+|+|++..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            346899999999999999999999754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.69  E-value=2.5e-05  Score=62.10  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ++++++|.+|||||||+|+|.+....
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~   26 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV   26 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC
Confidence            47999999999999999999876533

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.68  E-value=3.4e-05  Score=62.53  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=23.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|.+..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCC
Confidence            35799999999999999999999654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.67  E-value=3.3e-05  Score=71.33  Aligned_cols=68  Identities=7%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             CeEEEEEeC-CCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHH----HHHHHcCCeeEEecCccccc
Q 023932          122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMG  189 (275)
Q Consensus       122 DlVI~VvDa-r~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~----~~~~~~g~~vi~iSak~g~G  189 (275)
                      +++++++|. +..+...+..+...+. +.|+|+|+||+|+....++....    +.+...++.++.+||+++.+
T Consensus       147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~  220 (361)
T 2qag_A          147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE  220 (361)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred             EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence            467788875 5555555555555555 68999999999998776554322    22333467889999999988

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.67  E-value=2.8e-05  Score=64.12  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|++..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence            46899999999999999999999865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=97.67  E-value=3.1e-06  Score=70.44  Aligned_cols=41  Identities=20%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +..++|+++|.+|||||||||+|++.. ......|++|.+..
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~   71 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFK   71 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEE
Confidence            346899999999999999999999754 33333455554443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=97.66  E-value=2.1e-05  Score=66.15  Aligned_cols=39  Identities=26%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRV  254 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~  254 (275)
                      ..++|+++|.+|||||||+|+|++... ....+..|++..
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   49 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH   49 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE
Confidence            468999999999999999999996542 223444454433

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.66  E-value=2.8e-05  Score=64.92  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+++|.+|||||||+|+|.+..
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence            346899999999999999999999765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.63  E-value=3.1e-05  Score=65.68  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ..++|+|+|.+|||||||||+|++...
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~   38 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEF   38 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence            457999999999999999999997653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.63  E-value=3.3e-05  Score=62.84  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+++|.+|||||||+|+|++..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            346899999999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.62  E-value=4.7e-05  Score=62.60  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.5

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      .+.++|+++|.+|||||||+|+|++...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~   47 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQF   47 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4468999999999999999999997653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.61  E-value=2.3e-05  Score=65.79  Aligned_cols=27  Identities=19%  Similarity=0.354  Sum_probs=24.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+++|.+|||||||||+|++..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence            456899999999999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.60  E-value=3.2e-05  Score=62.53  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=27.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      ..++|+++|.+|||||||+|+|.+.......+..|
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~   40 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES   40 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcc
Confidence            35799999999999999999999866444333333

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.60  E-value=6.1e-05  Score=62.68  Aligned_cols=41  Identities=24%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ....++|+++|.+|||||||+|+|.+... .....|.++.+.
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~   62 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY   62 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceE
Confidence            34568999999999999999999997653 233344444443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.60  E-value=4.8e-05  Score=72.01  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+++|.+|+|||||+|+|+..
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.59  E-value=3e-05  Score=71.09  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             ccEEEEeCCCcccc---ccchhHH-HHHHHHHHHHhh-cCeEEEEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQ---WYPGHIA-KTEKELKDQLKL-MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~---~~pG~~~-~~~k~l~~~l~~-aDlVI~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl  159 (275)
                      .++..||+....-.   .-|.... ...+.+..++.+ .++|++|+|+.......+. .+.+.+.  +.|+++|+||+|+
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl  209 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDL  209 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGG
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccc
Confidence            56888885442211   0122222 344455566654 4567778888765555443 2555554  6899999999999


Q ss_pred             cCHHH-HHHHHHH-HH--HcC-CeeEEecCccccchhhHHHHHHH
Q 023932          160 ISMAD-RNAWATY-FA--KQG-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       160 ~~~~~-~~~~~~~-~~--~~g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..... .....+. ..  +.+ ..++.+||+++.|+++|.+.+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          210 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             SCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             cCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            86432 1121110 00  112 25778999999999999887765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=97.59  E-value=3.7e-05  Score=75.93  Aligned_cols=28  Identities=29%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ...++|+++|.+|+|||||+|+|+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~  192 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN  192 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcC
Confidence            3468999999999999999999997643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.57  E-value=2e-05  Score=63.77  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++++++|.+|||||||+|+|.+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            35799999999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.57  E-value=5.5e-05  Score=61.39  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|++..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC
Confidence            45799999999999999999999764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.56  E-value=1.7e-05  Score=73.29  Aligned_cols=106  Identities=13%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCc---HHHHHHh-----cCCC
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRK  149 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s---------~~d---~~l~~~L-----~~kp  149 (275)
                      ...+..||..+.         ....+....++++++.||+|+|..+..+         ..+   ..+...+     .+.|
T Consensus       192 ~~~l~iwDt~GQ---------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          192 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             CeeEEEEeCCCc---------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            356788885431         1122222235689999999999876321         111   1122222     2579


Q ss_pred             eEEEEEcccCcCHH-----------------HHHHHHHHHH-----------HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          150 RILVLNREDMISMA-----------------DRNAWATYFA-----------KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       150 ~IlVlNK~Dl~~~~-----------------~~~~~~~~~~-----------~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      +||++||+|+....                 ..++...++.           ..++.++++||+++.|+.++.+.+.+..
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999999985321                 1223333333           1245688999999999999887766543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.56  E-value=0.00017  Score=65.55  Aligned_cols=95  Identities=16%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             HHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch-hhhhhhcCCCCCcce
Q 023932          140 LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD-VNVKRRSKGLLPRAV  218 (275)
Q Consensus       140 ~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~-~~~~~~~~~~~~~~~  218 (275)
                      .+.+++......||++|.|..+..    .++..++.++.++.++..+...+..|..++...... .....  -.+.-.+.
T Consensus        72 rler~l~~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~--~~v~~~g~  145 (314)
T 1ko7_A           72 RMRKLCRPETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG--VLVDVYGV  145 (314)
T ss_dssp             HHHHHCCTTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEES--EEEEETTE
T ss_pred             HHHHHhcCCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeE--EEEEECCE
Confidence            355566556778889999988653    334455568888988888888888888887653321 10000  00011235


Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -++|+|.+|+|||||.+.|+++
T Consensus       146 ~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          146 GVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHhc
Confidence            6899999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.56  E-value=6.1e-05  Score=62.24  Aligned_cols=27  Identities=41%  Similarity=0.687  Sum_probs=23.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ..++|+++|.+|||||||+|+|++...
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~   53 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRF   53 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            357999999999999999999998653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.55  E-value=5.3e-05  Score=62.75  Aligned_cols=28  Identities=21%  Similarity=0.437  Sum_probs=24.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      +.++|+++|.+|||||||+|+|.+....
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~   55 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIV   55 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence            4689999999999999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.55  E-value=7.4e-05  Score=61.43  Aligned_cols=38  Identities=16%  Similarity=0.098  Sum_probs=28.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...+|+++|.+|||||||+|+|++.. . ......|+.+.
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~-~-~~~~~~t~~~~   54 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDA-F-PEEYVPTVFDH   54 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSS-C-CCSCCCSSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCcccce
Confidence            35799999999999999999999764 2 23344455443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.54  E-value=0.00015  Score=73.18  Aligned_cols=76  Identities=20%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ..++-.+.|+++|...+.++........  ....-...+|+++|.+|+|||||||+|++...+.++..+ +||-...+.
T Consensus        17 ~~~~~~~~~~~~li~~inkl~d~l~~lg--~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~   92 (772)
T 3zvr_A           17 RGSHMGNRGMEDLIPLVNRLQDAFSAIG--QNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQ   92 (772)
T ss_dssp             --------CGGGHHHHHHHHHHHHHTTT--CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEE
T ss_pred             cccccccccHHHHHHHHHHHHHHHHhcC--ccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEE
Confidence            3456667888888887776654221110  011123468999999999999999999998766666554 777665443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=97.54  E-value=2.6e-05  Score=76.74  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+++|.+|+|||||+|+|+..
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~  200 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFE  200 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.54  E-value=4.1e-05  Score=65.04  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~  256 (275)
                      +.-++|+|.+|+|||||+|+|++... .....++.|||...
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~   59 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR   59 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence            34689999999999999999997654 35677889999875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.53  E-value=8.7e-05  Score=61.98  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=28.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..++|+++|.+|||||||+|+|.+...  ....+.|+.+.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~   45 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDN   45 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCcccee
Confidence            457999999999999999999997642  23334444433

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.53  E-value=5.9e-05  Score=62.65  Aligned_cols=87  Identities=13%  Similarity=-0.021  Sum_probs=57.7

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..+..+|.+++|+|.....+..+. .+...+     .+.|+++|+||+|+.....  .........+.++.++.+||+++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~  152 (199)
T 2f9l_A           73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS  152 (199)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            355789999999998765332221 111111     2578999999999964321  12233334455677888999999


Q ss_pred             cchhhHHHHHHHHhc
Q 023932          188 MGTMKLSRLAKALAS  202 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~  202 (275)
                      .|++++.+.|.+...
T Consensus       153 ~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          153 TNVEEAFKNILTEIY  167 (199)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999888776543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.53  E-value=0.00015  Score=59.51  Aligned_cols=26  Identities=38%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+|+++|.+|||||||+|+|++..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence            35799999999999999999999754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.52  E-value=4.2e-05  Score=73.19  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC------------------------------CccccCCCCcccccceEEE------
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR------------------------------RMCPAAPRPGVTRVLKYVS------  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------------------------------~~~~vs~~pGtTr~~~~v~------  259 (275)
                      ..++|+++|.+|+|||||+|+|+..                              +.......+|+|.+.....      
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            3579999999999999999999754                              1223445579999887654      


Q ss_pred             EEEeeccccc
Q 023932          260 QFFLLKYHQK  269 (275)
Q Consensus       260 ~~~~~~~~~~  269 (275)
                      .+.+.+++|.
T Consensus       112 ~~~iiDTPG~  121 (483)
T 3p26_A          112 NFTIVDAPGH  121 (483)
T ss_dssp             EEEEECCCCC
T ss_pred             eEEEEECCCc
Confidence            2445555554

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.50  E-value=1.4e-05  Score=66.23  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=6.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ..++|+++|.+|||||||+|+|++......+..+.|+
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~   55 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS   55 (208)
T ss_dssp             EEEEEEEC-----------------------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc
Confidence            4579999999999999999999976333333444444

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.50  E-value=5.9e-05  Score=62.67  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++++++|.+|||||||+|+|.+..
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence            35789999999999999999999865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.50  E-value=5.4e-05  Score=60.95  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|.+..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCc
Confidence            46899999999999999999999765

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.49  E-value=6.6e-05  Score=63.24  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.++|+++|.+|||||||+|+|++..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~   58 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGA   58 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence            45899999999999999999999754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.49  E-value=0.00019  Score=61.90  Aligned_cols=87  Identities=9%  Similarity=-0.079  Sum_probs=55.3

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCC-CcHHH---HHHh------cCCCeEEEEEcc-cCcCHHHHHHHHHHHH----HcCCee
Q 023932          115 KDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA----KQGTKV  179 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~-~d~~l---~~~L------~~kp~IlVlNK~-Dl~~~~~~~~~~~~~~----~~g~~v  179 (275)
                      +.+++++|.||||||+.+..-. ...++   ...+      .+.|++|+.||. |+.......+..+.+.    +....+
T Consensus       120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~I  199 (227)
T 3l82_B          120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLV  199 (227)
T ss_dssp             HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEE
T ss_pred             HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEE
Confidence            3588999999999999754221 22233   2222      256899999996 6653322223322221    122468


Q ss_pred             EEecCccccchhhHHHHHHHHh
Q 023932          180 IFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ..+||.+|+|+.+-.++|.+..
T Consensus       200 q~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          200 QDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             EEEETTTCTTHHHHHHHHTTTT
T ss_pred             EEeECCCCcCHHHHHHHHHHHH
Confidence            8999999999998888865443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.48  E-value=7.3e-05  Score=62.47  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ..+|+++|.+|||||||+|+|.+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~   50 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEF   50 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCC
Confidence            57899999999999999999998653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.47  E-value=9.1e-05  Score=61.34  Aligned_cols=27  Identities=26%  Similarity=0.513  Sum_probs=23.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      ...+++++|.+|||||||+|+|.+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            357999999999999999999998653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.47  E-value=4.8e-05  Score=62.42  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=21.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++++++|.+|||||||+|+|.+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999999975

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.45  E-value=4.2e-05  Score=70.84  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=61.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCc---HHHHHHh-----cCCCe
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRKR  150 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s---------~~d---~~l~~~L-----~~kp~  150 (275)
                      ..+..||..+        . ....+.....+++++.||+|+|..+...         ...   ..+..++     .+.|+
T Consensus       201 ~~l~i~Dt~G--------q-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi  271 (362)
T 1zcb_A          201 VPFKMVDVGG--------Q-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI  271 (362)
T ss_dssp             EEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred             eEEEEEeccc--------h-hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence            4677887543        2 2223333345689999999999876310         111   1122222     25799


Q ss_pred             EEEEEcccCcCH------------------HHHHHHHHHH----H-------HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932          151 ILVLNREDMISM------------------ADRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       151 IlVlNK~Dl~~~------------------~~~~~~~~~~----~-------~~g~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                      ||++||+|+...                  ...++...++    .       ..++.++++||+++.|++++.+.+.+..
T Consensus       272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i  351 (362)
T 1zcb_A          272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  351 (362)
T ss_dssp             EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence            999999998532                  1122333332    1       1235678999999999999887766543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.45  E-value=0.00012  Score=69.65  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-|+|+|.+|+|||||+|.|++.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            45899999999999999999964

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.44  E-value=0.00011  Score=67.13  Aligned_cols=101  Identities=8%  Similarity=-0.029  Sum_probs=58.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~  160 (275)
                      ..+.+||+++.- + |-.   ..+ ....++++++.+|+|+|..+.....-..+.+++       .+.|+++|.||+|+.
T Consensus        46 v~LqIWDTAGQE-r-f~~---~~l-~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~  119 (331)
T 3r7w_B           46 IDLAVMELPGQL-N-YFE---PSY-DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL  119 (331)
T ss_dssp             SCEEEEECCSCS-S-SCC---CSH-HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred             EEEEEEECCCch-h-ccc---hhh-hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence            679999965421 1 100   000 224568999999999999876111112222222       267999999999998


Q ss_pred             CHHHHH----HH----HHHHHH-----cCCeeEEecCccccchhhHHH
Q 023932          161 SMADRN----AW----ATYFAK-----QGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       161 ~~~~~~----~~----~~~~~~-----~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      +..++.    ..    .+.+.+     .++.++.+||++ .++.+...
T Consensus       120 ~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs  166 (331)
T 3r7w_B          120 SEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFS  166 (331)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHH
T ss_pred             chhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHH
Confidence            643211    11    122223     245788999987 46665433

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.43  E-value=9.1e-05  Score=62.12  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccc--cCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~--vs~~pGtTr~~  255 (275)
                      ...+++++|.+|||||||+|+|.+.....  ++..|+++.+.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~   52 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY   52 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence            45789999999999999999999765322  24556666544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.41  E-value=6.4e-05  Score=69.67  Aligned_cols=25  Identities=56%  Similarity=0.869  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++|||.||||||||+|+|++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~   26 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAG   26 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            3689999999999999999999754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.41  E-value=0.00011  Score=61.40  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=27.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ...+|+++|.+|||||||+|+|++...  ....+.++.+.
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~   43 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSS   43 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceee
Confidence            357899999999999999999997652  23334444443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.41  E-value=0.00046  Score=63.20  Aligned_cols=107  Identities=7%  Similarity=-0.028  Sum_probs=65.3

Q ss_pred             ccEEEEeCCCccccc---cc-hhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-C-CCcHHHHHHhc--CCCeEEEEEcccC
Q 023932           88 ADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDARIPL-S-TTHPLMDQWLG--NRKRILVLNREDM  159 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~---~p-G~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s-~~d~~l~~~L~--~kp~IlVlNK~Dl  159 (275)
                      .++..||+....-..   -+ +........+..++.++|+||+|+|+.... . .....+...+.  ++++++|+||+|+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl  215 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL  215 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence            568888865422110   02 223344566778899999999999875322 2 22233444443  6799999999999


Q ss_pred             cCHHHHHHHHHHHH----HcCCeeEEecCccccchhhHHHH
Q 023932          160 ISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRL  196 (275)
Q Consensus       160 ~~~~~~~~~~~~~~----~~g~~vi~iSak~g~Gi~~L~~~  196 (275)
                      ......  +.+.+.    ..+..++.+|+.++.++++....
T Consensus       216 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          216 MDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             CCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             CCCccc--HHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            864321  112221    23467889999998887765443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.40  E-value=9.9e-05  Score=61.12  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...||+++|.+|||||||+|.|.++.
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhcC
Confidence            46799999999999999999998753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.40  E-value=0.00035  Score=70.02  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      =+.||| ..+..++...++-+|.+|+|||+..+....-..+.+...  +.|.++++||+|..
T Consensus        90 IDTPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           90 IDTPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             ECCCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred             EeCCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence            356999 678888999999999999999999988776666655543  89999999999975

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.40  E-value=0.00013  Score=59.68  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++++++|.+|||||||+|+|.+..
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence            45799999999999999999999764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=96.49  E-value=2.6e-05  Score=64.93  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.++|+++|.+|||||||+|+|++..
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~   54 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
Confidence            45789999999999999999998643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.35  E-value=0.00043  Score=58.32  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=49.0

Q ss_pred             CeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHHHHc--CCeeEEecCccccchhhHHHHH
Q 023932          122 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~--g~~vi~iSak~g~Gi~~L~~~i  197 (275)
                      +.++.|+|+..+....... ... .++|.++|+||+|+.+..  ..++..+.+.+.  +..++.+||++|.|+++|.+.+
T Consensus       141 ~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  218 (226)
T 2hf9_A          141 HKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFI  218 (226)
T ss_dssp             SEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred             CcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHH
Confidence            4456777754322111111 111 257889999999997542  233444444433  4679999999999999998887


Q ss_pred             HHHh
Q 023932          198 KALA  201 (275)
Q Consensus       198 ~~l~  201 (275)
                      .+..
T Consensus       219 ~~~~  222 (226)
T 2hf9_A          219 EKSV  222 (226)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=97.35  E-value=0.00015  Score=63.35  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CcceeEEEEeeC---------CCChhHHHHHHhcC--CccccCCCCcc
Q 023932          215 PRAVRAGIVGYP---------NVGKSSLINRLLKR--RMCPAAPRPGV  251 (275)
Q Consensus       215 ~~~~rv~IvG~p---------NvGKSTLIN~Ll~~--~~~~vs~~pGt  251 (275)
                      ...+||+++|.+         |||||||+|+|++.  ........|.+
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~   64 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVL   64 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEE
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcc
Confidence            446899999999         99999999999974  33444444443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.35  E-value=0.00014  Score=61.08  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|.+..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            45799999999999999999999765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.34  E-value=9e-05  Score=69.86  Aligned_cols=39  Identities=38%  Similarity=0.565  Sum_probs=33.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ...++|+|.||||||||||+|.+.. ..+++.|++|.+..
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~  195 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPN  195 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecce
Confidence            3468999999999999999999765 57788999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.34  E-value=0.00015  Score=61.14  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+++|.+|||||||+|+|++..
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence            35899999999999999999999765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.31  E-value=8.1e-05  Score=62.68  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=28.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV  254 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~  254 (275)
                      ..+++|+|.+|||||||+|+|++.     +...+..-||+|.|
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d   72 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKAD   72 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchh
Confidence            457999999999999999999864     23344455666543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.30  E-value=0.00018  Score=64.00  Aligned_cols=39  Identities=15%  Similarity=0.062  Sum_probs=29.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ..++++++|.+|||||||+|++.+..  .....++||.+..
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~  192 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNY  192 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCccccee
Confidence            35799999999999999999999754  2344556666543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.28  E-value=0.00012  Score=60.16  Aligned_cols=27  Identities=37%  Similarity=0.592  Sum_probs=23.9

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+||+|+|.+|||||||+|+|++..
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            346899999999999999999999765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.24  E-value=0.00027  Score=68.27  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..|+..+.++++++......  .+.......+||+++|.||||||||+|+|.+..
T Consensus        13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred             HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence            45778888887776542110  011112346899999999999999999999764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.20  E-value=0.0001  Score=71.61  Aligned_cols=53  Identities=23%  Similarity=0.329  Sum_probs=39.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK  269 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~  269 (275)
                      ++.+|+++|.+|+|||||+|+|++.. ......||+|.+.....       .+.+.+++|.
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh   62 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH   62 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence            45689999999999999999999765 44557789998875443       2345566553

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.19  E-value=0.00015  Score=66.88  Aligned_cols=104  Identities=12%  Similarity=0.007  Sum_probs=59.5

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCC-------CCCCC-cHH----HHHHh-----cCCCe
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------PLSTT-HPL----MDQWL-----GNRKR  150 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~-------p~s~~-d~~----l~~~L-----~~kp~  150 (275)
                      ..+.+||+...         ....+....++++++.+|+|+|...       ..... -..    +...+     .+.|+
T Consensus       183 v~l~iwDtaGQ---------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pi  253 (354)
T 2xtz_A          183 EVYRLFDVGGQ---------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF  253 (354)
T ss_dssp             -EEEEEEECCS---------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEE
T ss_pred             eeeEEEECCCc---------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeE
Confidence            56888886542         1122222235689999999999861       11111 011    11222     25789


Q ss_pred             EEEEEcccCcCHH-----------------------HHHHHHHHHHH----------------cCCeeEEecCccccchh
Q 023932          151 ILVLNREDMISMA-----------------------DRNAWATYFAK----------------QGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       151 IlVlNK~Dl~~~~-----------------------~~~~~~~~~~~----------------~g~~vi~iSak~g~Gi~  191 (275)
                      +||+||+|+....                       ..++..+++.+                ....++++||+++.|++
T Consensus       254 iLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~  333 (354)
T 2xtz_A          254 MLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK  333 (354)
T ss_dssp             EEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHH
T ss_pred             EEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHH
Confidence            9999999984321                       12222233221                12346799999999999


Q ss_pred             hHHHHHHHH
Q 023932          192 KLSRLAKAL  200 (275)
Q Consensus       192 ~L~~~i~~l  200 (275)
                      ++.+.+.+.
T Consensus       334 ~vF~~v~~~  342 (354)
T 2xtz_A          334 KTFKLVDET  342 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887766543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.19  E-value=0.0004  Score=64.82  Aligned_cols=43  Identities=26%  Similarity=0.366  Sum_probs=32.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccceEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKYV  258 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~~~v  258 (275)
                      ..++|+++|.+|+|||||+|+|++...  ......+|+|.++...
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~   53 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFA   53 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeee
Confidence            457999999999999999999996432  2233347888877643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.18  E-value=0.00042  Score=62.20  Aligned_cols=77  Identities=6%  Similarity=0.009  Sum_probs=41.0

Q ss_pred             CeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHH----HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932          122 DVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSR  195 (275)
Q Consensus       122 DlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~~g~~vi~iSak~g~Gi~~L~~  195 (275)
                      ++++++++.. ..+...+..+...+. +.++++|+||.|+....++.    +..+++.+.++.++.+||+++ |++++..
T Consensus       128 ~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~  206 (301)
T 2qnr_A          128 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK  206 (301)
T ss_dssp             CEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred             hheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence            3466665532 223333333333343 56899999999998765432    334445566788999999999 9988765


Q ss_pred             HHHH
Q 023932          196 LAKA  199 (275)
Q Consensus       196 ~i~~  199 (275)
                      .+.+
T Consensus       207 ~l~~  210 (301)
T 2qnr_A          207 EQTR  210 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.18  E-value=0.00034  Score=64.11  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=28.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .+|++||.+|||||||||+|++......+. .-+||...
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~   72 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPL   72 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcce
Confidence            489999999999999999999876444333 23555544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.17  E-value=7.6e-05  Score=63.07  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+++|+|.+|||||||+|+|+..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            568999999999999999999854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.16  E-value=0.00016  Score=59.02  Aligned_cols=26  Identities=12%  Similarity=0.098  Sum_probs=23.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+||+++|.+|||||||+|.|.+..
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhc
Confidence            45799999999999999999998754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.15  E-value=0.00022  Score=58.74  Aligned_cols=39  Identities=28%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK  256 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~  256 (275)
                      ..++|+|.+|+|||||+|.|.+... .....++.+||...
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~   45 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK   45 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence            3589999999999999999997542 12345677777643

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.13  E-value=0.00038  Score=63.56  Aligned_cols=103  Identities=11%  Similarity=0.029  Sum_probs=63.6

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCC-------CCCCCCcH------HHHHHh-----cCCC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTHP------LMDQWL-----GNRK  149 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar-------~p~s~~d~------~l~~~L-----~~kp  149 (275)
                      ..+..||.++         +....+....++++++.+|+|+|..       +.. ..+.      .+...+     .+.|
T Consensus       167 v~l~iwDtgG---------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~-~~nr~~es~~~~~~i~~~~~~~~~~  236 (327)
T 3ohm_A          167 VIFRMVDVGG---------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD-NENRMEESKALFRTIITYPWFQNSS  236 (327)
T ss_dssp             EEEEEEEECC---------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCT-TSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred             eeeEEEEcCC---------chhHHHHHHHHhCCCCEEEEEEECccccccccccc-cHhHHHHHHHHHHHHhhhhccCCce
Confidence            5678888543         2334444445679999999999865       211 1111      122222     2579


Q ss_pred             eEEEEEcccCcCHH------------------HHHHHHHHHH----------HcCCeeEEecCccccchhhHHHHHHHH
Q 023932          150 RILVLNREDMISMA------------------DRNAWATYFA----------KQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       150 ~IlVlNK~Dl~~~~------------------~~~~~~~~~~----------~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      ++|++||+|+....                  ..++..+++.          +.++.++++||+++.+++.+...+.+.
T Consensus       237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            99999999986422                  2233334432          123457889999999998887766553

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.12  E-value=0.00021  Score=64.95  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..++|+|+|.+|||||||+|+|++....
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~  191 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIV  191 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCC
Confidence            4569999999999999999999977643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.10  E-value=0.00029  Score=64.70  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=62.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH------HHHHHh-----cCCCe
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP------LMDQWL-----GNRKR  150 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~------s~~d~------~l~~~L-----~~kp~  150 (275)
                      ..+.+||...         +....+....++++++.||+|+|.....      ...+.      .+...+     .+.|+
T Consensus       161 v~l~iwDtaG---------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi  231 (340)
T 4fid_A          161 IPFHLIDVGG---------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK  231 (340)
T ss_dssp             CEEEEEECCS---------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred             eeeccccCCC---------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence            5678888543         2445555556789999999999986210      01111      112222     26799


Q ss_pred             EEEEEcccCcCHH-----------------HHHHHHHHHHHc---------------------------CCeeEEecCcc
Q 023932          151 ILVLNREDMISMA-----------------DRNAWATYFAKQ---------------------------GTKVIFSNGQL  186 (275)
Q Consensus       151 IlVlNK~Dl~~~~-----------------~~~~~~~~~~~~---------------------------g~~vi~iSak~  186 (275)
                      +|++||+|+....                 ..++..+++.+.                           .+.++++||++
T Consensus       232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d  311 (340)
T 4fid_A          232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD  311 (340)
T ss_dssp             EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred             EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence            9999999986421                 122222333221                           24567899999


Q ss_pred             ccchhhHHHHHHH
Q 023932          187 GMGTMKLSRLAKA  199 (275)
Q Consensus       187 g~Gi~~L~~~i~~  199 (275)
                      ..+++.+...+.+
T Consensus       312 t~nv~~vF~~v~~  324 (340)
T 4fid_A          312 GSNIKRVFMLAVD  324 (340)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9999887665554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.09  E-value=0.0012  Score=59.50  Aligned_cols=87  Identities=9%  Similarity=-0.055  Sum_probs=56.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCC-cHHHH---HH------hcCCCeEEEEEc-ccCcCHHHHHHHHHHHH----HcCCeeE
Q 023932          116 DQLKLMDVVIEVRDARIPLSTT-HPLMD---QW------LGNRKRILVLNR-EDMISMADRNAWATYFA----KQGTKVI  180 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~-d~~l~---~~------L~~kp~IlVlNK-~Dl~~~~~~~~~~~~~~----~~g~~vi  180 (275)
                      .+++++|.||||||+.+..-.. ..++.   ..      +.+.|++|..|| -|+.......+..+.+.    +....+.
T Consensus       206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq  285 (312)
T 3l2o_B          206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ  285 (312)
T ss_dssp             HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred             HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEE
Confidence            4889999999999996543211 11221   11      347899999997 47754322233333221    1124688


Q ss_pred             EecCccccchhhHHHHHHHHhc
Q 023932          181 FSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       181 ~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .+||.+|+|+.+-.+++.+...
T Consensus       286 ~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          286 DTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             EEETTTCTTHHHHHHHHHHHSC
T ss_pred             ecccCCCcCHHHHHHHHHHHHH
Confidence            9999999999998888766543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.09  E-value=0.00064  Score=66.21  Aligned_cols=62  Identities=21%  Similarity=0.112  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCC-CCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH
Q 023932          111 EKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF  172 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p-~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~  172 (275)
                      .+.+...+..+|+||+|+|+... ....+..+.+.+.  +.|+++|+||+|+.+..++.+....+
T Consensus       179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l  243 (550)
T 2qpt_A          179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL  243 (550)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence            35556678999999999999874 3333445555554  56899999999999876665554443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.09  E-value=0.0004  Score=65.13  Aligned_cols=105  Identities=9%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC---C---CCCc--HH----HHHHh-----cCCCe
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP---L---STTH--PL----MDQWL-----GNRKR  150 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p---~---s~~d--~~----l~~~L-----~~kp~  150 (275)
                      ..+.+||....         ....+....++++++.+|+|+|..+.   +   ...+  ..    +..++     .+.|+
T Consensus       217 v~l~iwDtaGQ---------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          217 VNFHMFDVGGQ---------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEEEEECCS---------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             ccceecccchh---------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            56778885542         22222233467899999999998761   0   0011  11    12222     25689


Q ss_pred             EEEEEcccCcCHHH--------------------------------HHHHHHHH----HH---------cCCeeEEecCc
Q 023932          151 ILVLNREDMISMAD--------------------------------RNAWATYF----AK---------QGTKVIFSNGQ  185 (275)
Q Consensus       151 IlVlNK~Dl~~~~~--------------------------------~~~~~~~~----~~---------~g~~vi~iSak  185 (275)
                      +||+||+|+.....                                .++...++    .+         .++.++++||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999853211                                11222221    11         12446789999


Q ss_pred             cccchhhHHHHHHHHh
Q 023932          186 LGMGTMKLSRLAKALA  201 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~  201 (275)
                      ++.|++++...+.+..
T Consensus       368 d~~nV~~vF~~v~~~I  383 (402)
T 1azs_C          368 DTENIRRVFNDCRDII  383 (402)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHH
Confidence            9999998877766543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.08  E-value=0.00056  Score=64.45  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=41.8

Q ss_pred             cCeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHH----HHHHHHHcCCeeEEecCccccchhhHH
Q 023932          121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       121 aDlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~----~~~~~~~~g~~vi~iSak~g~Gi~~L~  194 (275)
                      ++++|++++.. ..+...+..+...+. +.++|+|+||+|++...++..    ..+.+...++.++.+|++++.++.++.
T Consensus       139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~  218 (418)
T 2qag_C          139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV  218 (418)
T ss_dssp             CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred             eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence            45577766654 455555544555554 679999999999987655443    334445567888999999998887655


Q ss_pred             HHHHH
Q 023932          195 RLAKA  199 (275)
Q Consensus       195 ~~i~~  199 (275)
                      ..+..
T Consensus       219 ~~l~~  223 (418)
T 2qag_C          219 KKIKD  223 (418)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            44443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.08  E-value=0.00027  Score=67.67  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC------ccccCCCCcccccceE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKY  257 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~------~~~vs~~pGtTr~~~~  257 (275)
                      .++|+++|.+|+|||||+|+|++..      ....+..+|+|.+...
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~   65 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF   65 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CC
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce
Confidence            5799999999999999999999765      2445667899987753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.07  E-value=0.00023  Score=63.06  Aligned_cols=26  Identities=35%  Similarity=0.597  Sum_probs=22.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      .+++++|.+|+|||||||.|.+....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            47899999999999999999975433

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.06  E-value=0.00072  Score=63.10  Aligned_cols=42  Identities=31%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccceEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKYV  258 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~~~v  258 (275)
                      .++|+++|.+|+|||||+|+|++...  ......+|+|.++...
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~   51 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYA   51 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccc
Confidence            57999999999999999999996532  2333347888887643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.06  E-value=0.0001  Score=70.22  Aligned_cols=24  Identities=21%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+++|.+|+|||||+|+|++.
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHH
Confidence            578999999999999999999854

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.00  E-value=0.00097  Score=60.85  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcC-HHHHHHHHHHHHH----c-------CCeeEEecC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS-MADRNAWATYFAK----Q-------GTKVIFSNG  184 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~-~~~~~~~~~~~~~----~-------g~~vi~iSa  184 (275)
                      ..+.+|++++|+|+..+...  ..+...+.+.+.++|+||+|+.. ........+.+..    .       ..+++++||
T Consensus       165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa  242 (337)
T 2qm8_A          165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG  242 (337)
T ss_dssp             HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred             HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence            35789999999997543110  00100011346788899999764 2221122222211    1       246889999


Q ss_pred             ccccchhhHHHHHHHHhc
Q 023932          185 QLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~  202 (275)
                      +++.|+++|.+.|.++..
T Consensus       243 l~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          243 LHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999998887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.99  E-value=0.0013  Score=54.30  Aligned_cols=83  Identities=14%  Similarity=0.020  Sum_probs=54.6

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      .++.++.+++|+|..+..+..+. .+...+     .+.++++|+||+|+....  ..........+.++.++.+|++++.
T Consensus        98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~  177 (191)
T 1oix_A           98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST  177 (191)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            55788999999998754322111 111111     156899999999986432  1122333344456778889999999


Q ss_pred             chhhHHHHHHH
Q 023932          189 GTMKLSRLAKA  199 (275)
Q Consensus       189 Gi~~L~~~i~~  199 (275)
                      |++++.+.|.+
T Consensus       178 ~v~~l~~~l~~  188 (191)
T 1oix_A          178 NVEAAFQTILT  188 (191)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999887754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.96  E-value=0.00033  Score=64.58  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA  246 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs  246 (275)
                      ...+|+++|.+|+|||||||+|++......+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            3578999999999999999999876544433

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.96  E-value=0.00031  Score=64.14  Aligned_cols=23  Identities=57%  Similarity=0.868  Sum_probs=21.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      ....++|+|.||+|||||+|+|.
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999998

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.95  E-value=0.00023  Score=68.60  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      ++.+|+++|.+|+|||||+|+|++.. ...+..+|+|.+...
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~   43 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGA   43 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEE
Confidence            45689999999999999999999753 455666888877653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.94  E-value=0.00095  Score=62.85  Aligned_cols=26  Identities=38%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ...+|+++|.+|+|||||+|+|++..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            35799999999999999999998654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=96.94  E-value=0.00041  Score=70.88  Aligned_cols=57  Identities=21%  Similarity=0.280  Sum_probs=42.8

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCc
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI  160 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~  160 (275)
                      .|||. .+.......++.+|.+|+|+|+.++.......+...+  .+.|+++|+||+|+.
T Consensus       105 TPG~~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SPGHV-DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCC-SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CcCch-hhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            57773 3455667788999999999999987665554443332  278999999999986

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.90  E-value=0.00064  Score=58.06  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=22.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|-+|||||||||+++...
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~   37 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCC
Confidence            4689999999999999999998654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.87  E-value=0.0011  Score=62.39  Aligned_cols=24  Identities=33%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...++|+|.+|+|||||||+|.+-
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            447999999999999999999983

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.86  E-value=0.0005  Score=62.75  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=26.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc------CCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~------~~~~~vs~~pGtTr  253 (275)
                      ....++++|.||+|||||+|.|.+      .+...++.-|++|+
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence            457899999999999999999963      33344555555554

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=96.86  E-value=0.00066  Score=62.83  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK  269 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~  269 (275)
                      +|+++|.+|+|||||+|+|+         ..|+|.+.....      .+.+.+++|.
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh   70 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSY   70 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTT
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCCh
Confidence            79999999999999999998         356777765543      2445555554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.81  E-value=0.00073  Score=63.82  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++|+|.+|+|||||||.|.+..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCcc
Confidence            349999999999999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.79  E-value=0.00055  Score=63.77  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..++|+++|.+|+|||||+|+|++
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHh
Confidence            357999999999999999999986

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.74  E-value=0.00094  Score=56.27  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~  255 (275)
                      +.-++|+|.+|+|||||++.|.+.... ....++.+||..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~   47 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP   47 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccC
Confidence            456899999999999999999976533 444555666643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.73  E-value=0.0007  Score=63.06  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+++|.+|+|||||+|+|++.
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc
Confidence            4679999999999999999999974

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.68  E-value=0.00061  Score=63.39  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+++|.+|+|||||+|+|++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~   26 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKI   26 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhCh
Confidence            478999999999999999999863

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.68  E-value=0.00055  Score=57.40  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+|.+|+|||||+|.|.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999863

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.68  E-value=0.00052  Score=66.57  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      ..+|+|+|.+|+|||||+|+|+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3579999999999999999997

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.66  E-value=0.00062  Score=57.01  Aligned_cols=39  Identities=23%  Similarity=0.168  Sum_probs=27.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~  255 (275)
                      +.-++|+|.||+|||||.+.|...... ....++.|||..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~   51 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNK   51 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCC
Confidence            346899999999999999999865321 222345677654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.63  E-value=0.00072  Score=63.71  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+|+++|.+|+|||||+|+|+..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHHH
Confidence            578999999999999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.62  E-value=0.0013  Score=65.83  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=33.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCcc-----------ccCC------CCcccccceEEE------EEEeecccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----------~vs~------~pGtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      ...+|+|+|.+|+|||||+|+|+.....           .+.+      .+|+|.......      .+.+.+++|..++
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            3568999999999999999999852111           1222      467777665433      2567777776543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.59  E-value=0.0025  Score=61.78  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+|+|+|.+|+|||||+|+|+..
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhh
Confidence            468999999999999999999863

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.53  E-value=0.0018  Score=61.00  Aligned_cols=28  Identities=32%  Similarity=0.414  Sum_probs=24.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      +-..+|+|+|.+|||||||||.|.+...
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3457899999999999999999998654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.53  E-value=0.0011  Score=56.71  Aligned_cols=39  Identities=28%  Similarity=0.204  Sum_probs=29.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~~  255 (275)
                      +.-++|+|.+|+|||||++.|.+....  ....++-+||..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~   56 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   56 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence            456899999999999999999976542  344566677664

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=96.52  E-value=0.0019  Score=63.52  Aligned_cols=38  Identities=21%  Similarity=0.442  Sum_probs=26.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-cccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-GtTr~~  255 (275)
                      +..+|+|+|.+|+|||||+|+|++...  ....| |+|.++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~i   42 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHI   42 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceeccc
Confidence            356899999999999999999997532  22223 666553

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.52  E-value=0.0014  Score=58.81  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -..+++++|.+|||||||||+|.+.
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCC
Confidence            3578999999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.48  E-value=0.0029  Score=53.11  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+..++|+|.+|+|||||++.|.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=96.45  E-value=0.0011  Score=63.25  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..++|+++|.+|+|||||+|+|+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHH
Confidence            357899999999999999999974

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0028  Score=51.60  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=34.1

Q ss_pred             HHHHhhcCeEEEEEeCC-CCCCCCc--HHHHHHh--------cCCCeEEEEEcccCcCHHHHHHHHH
Q 023932          115 KDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT  170 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar-~p~s~~d--~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~~~~~~  170 (275)
                      ...+..+|++|+|+|+. ...+...  ..+..++        .+.|+++|+||+|+.......+..+
T Consensus       113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  179 (193)
T 2ged_A          113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD  179 (193)
T ss_dssp             HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred             HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence            33456699999999997 3211111  1222222        2689999999999986544333333

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=96.38  E-value=0.0018  Score=66.06  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ..+|+|+|.+|+|||||+|+|+.......+..+|.|
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~   54 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA   54 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCc
Confidence            458999999999999999999975444444334433

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.23  E-value=0.0029  Score=51.75  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++++|.+|+|||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.20  E-value=0.0025  Score=58.31  Aligned_cols=23  Identities=52%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      ...+|+|+|.||||||||+|+|.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999996

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.00059  Score=63.46  Aligned_cols=108  Identities=13%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             CeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCcc--EEEEeCCCccccccchhH------HHHHHHHHHHHhhc
Q 023932           50 PIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDAD--LYYWTKSLRPVQWYPGHI------AKTEKELKDQLKLM  121 (275)
Q Consensus        50 ~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~i~~~pG~~------~~~~k~l~~~l~~a  121 (275)
                      +.|.+||+  |+.+|+|+.|+............+.+++..  .+.+......+-+.||..      ....+++...+++|
T Consensus        73 a~V~ivG~--PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           73 ASVGFVGF--PSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             EEEEEECC--CCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CeEEEECC--CCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            47888887  344588888776655544444455555442  222222222233455542      12346777889999


Q ss_pred             CeEEEEEeCCCCCCCCcH---HHHHH---hcCCCeEEEEEcccC
Q 023932          122 DVVIEVRDARIPLSTTHP---LMDQW---LGNRKRILVLNREDM  159 (275)
Q Consensus       122 DlVI~VvDar~p~s~~d~---~l~~~---L~~kp~IlVlNK~Dl  159 (275)
                      |+|++|+|+++|....+.   ++..+   +..+|.++++||+|.
T Consensus       151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            999999999876433221   12111   126799999999996

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.00  E-value=0.0032  Score=52.73  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++|+|.+|+|||||+|.|.+-
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            456899999999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.98  E-value=0.0045  Score=51.12  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999998754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.97  E-value=0.0036  Score=51.70  Aligned_cols=24  Identities=33%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +.-++|+|.+|+|||||++.|.+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.93  E-value=0.0032  Score=53.47  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+..
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468999999999999999998743

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=95.77  E-value=0.0062  Score=64.11  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+++|.+|+|||||+|+|++.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~  319 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTV  319 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence            4589999999999999999999863

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.76  E-value=0.0055  Score=51.05  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++|+|.+|+|||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.74  E-value=0.01  Score=59.21  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...+|+|+|.+|+|||||+|+|+.
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999984

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.68  E-value=0.004  Score=52.91  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=16.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh-cC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL-KR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll-~~  240 (275)
                      +..++|+|.+|+|||||++.|. +.
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4568999999999999999999 64

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.67  E-value=0.007  Score=52.40  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=22.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|.+|+|||||++.|.+-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35578999999999999999999753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.66  E-value=0.0057  Score=52.37  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468999999999999999999753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.63  E-value=0.0083  Score=56.59  Aligned_cols=63  Identities=11%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHH----cCCeeEEecCc
Q 023932          123 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAK----QGTKVIFSNGQ  185 (275)
Q Consensus       123 lVI~VvDar~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~----~g~~vi~iSak  185 (275)
                      ++++|+|+++++...|..+.+.|. +.++|+|+||+|.++..++......+.+    .|+.++++|..
T Consensus       151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            477888999888888888888886 7899999999999988777666555543    46778888753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.61  E-value=0.0068  Score=52.07  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=26.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh-----cCCccccCCCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG  250 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll-----~~~~~~vs~~pG  250 (275)
                      ...++++|.+|||||||+|.|.     +++.+.+..-|+
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~   52 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG   52 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4568889999999999999998     666555554444

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.61  E-value=0.0056  Score=55.21  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+..++|+|.+|+|||||++.|.+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            355799999999999999999985

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.60  E-value=0.0052  Score=50.80  Aligned_cols=22  Identities=18%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+|.+|+|||||+|+|++.
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5889999999999999999853

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=95.60  E-value=0.0066  Score=59.70  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..+|+|+|.+|+|||||+|+|+.
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45899999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.59  E-value=0.0061  Score=52.59  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4568999999999999999999754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.56  E-value=0.013  Score=56.32  Aligned_cols=106  Identities=17%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             cCccEEEEeCCCccccccchhHHHHHHHHHHH--HhhcCeEEEEEeCCCCCCCCcHHHHHHhc-CCCe-EEEEEcccCcC
Q 023932           86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQ--LKLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMIS  161 (275)
Q Consensus        86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~--l~~aDlVI~VvDar~p~s~~d~~l~~~L~-~kp~-IlVlNK~Dl~~  161 (275)
                      ...|++++|+....-.  .   .....++...  +..+|.+++|+|+..+..  .......+. ..|+ ++|+||+|...
T Consensus       182 ~~~DvvIIDTpG~~~~--~---~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~  254 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQ--E---DSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHA  254 (504)
T ss_dssp             TTCCEEEEEECCCCTT--C---HHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCC
T ss_pred             CCCcEEEEeCCCCccc--c---hhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCcccc
Confidence            4578999986543211  0   1222222222  237899999999987643  223333332 3574 89999999875


Q ss_pred             HHHHHHHHHHHHHcCC------------------eeEEecCccccc-hhhHHHHHHHH
Q 023932          162 MADRNAWATYFAKQGT------------------KVIFSNGQLGMG-TMKLSRLAKAL  200 (275)
Q Consensus       162 ~~~~~~~~~~~~~~g~------------------~vi~iSak~g~G-i~~L~~~i~~l  200 (275)
                      ....  .++.....+.                  ..+++|+..|.| +.+|.+.+.+.
T Consensus       255 ~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          255 KGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             chHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            4221  1111112222                  224578999999 98888887655

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.55  E-value=0.0059  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+|.+|+|||||.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.53  E-value=0.0066  Score=52.46  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999999753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=95.52  E-value=0.0076  Score=59.27  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=17.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..+|+|+|.+|+|||||+++|+.
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~   26 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQ   26 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999986

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.52  E-value=0.0065  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=18.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      +.-++++|.+|+|||||++.+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            4568999999999999999644

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.51  E-value=0.019  Score=53.00  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcccC--cC---HHHHHHHHHHHHHcCCeeEEecCccccchhhHH
Q 023932          147 NRKRILVLNREDM--IS---MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       147 ~kp~IlVlNK~Dl--~~---~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~  194 (275)
                      .+|++++.||.|.  .+   .....+..++..+.+..++++||+.+.++.+|.
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~  253 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS  253 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence            4899999999984  22   223344445555567889999999887766553

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.45  E-value=0.025  Score=49.20  Aligned_cols=44  Identities=18%  Similarity=0.237  Sum_probs=29.4

Q ss_pred             hhcCeEEEEEeCCCC-CCCCcHHHHHHhc---C----CCeEEEEEcccCcCH
Q 023932          119 KLMDVVIEVRDARIP-LSTTHPLMDQWLG---N----RKRILVLNREDMISM  162 (275)
Q Consensus       119 ~~aDlVI~VvDar~p-~s~~d~~l~~~L~---~----kp~IlVlNK~Dl~~~  162 (275)
                      ..+|++|+|+|.... +...+..+...+.   +    +|+++|+||+|+.+.
T Consensus       118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            479999999887542 2222333444332   2    589999999999754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.42  E-value=0.0076  Score=50.08  Aligned_cols=24  Identities=13%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++|+|.+|+|||||++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999999753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.36  E-value=0.0074  Score=52.52  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.34  E-value=0.0071  Score=49.50  Aligned_cols=21  Identities=38%  Similarity=0.346  Sum_probs=19.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      -++++|.+|+|||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            579999999999999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.33  E-value=0.0085  Score=52.57  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568999999999999999999754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.32  E-value=0.0087  Score=51.37  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=20.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      +..++|+|.+|+|||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999998

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.31  E-value=0.0078  Score=52.61  Aligned_cols=25  Identities=32%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.30  E-value=0.0081  Score=51.56  Aligned_cols=25  Identities=20%  Similarity=0.318  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999999754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.29  E-value=0.0088  Score=52.44  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=22.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++|+|.+|+|||||++.|.+-
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3457899999999999999999975

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.27  E-value=0.0092  Score=52.53  Aligned_cols=25  Identities=20%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            4568999999999999999999753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.26  E-value=0.0096  Score=52.39  Aligned_cols=24  Identities=33%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++|+|..|+|||||++.|.+-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999984

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.26  E-value=0.0084  Score=52.80  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4568999999999999999999754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.24  E-value=0.0093  Score=52.64  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999999753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.23  E-value=0.0082  Score=57.83  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+..|+|+|.+|||||||+|+|.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.23  E-value=0.008  Score=51.28  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.23  E-value=0.0047  Score=50.89  Aligned_cols=21  Identities=38%  Similarity=0.659  Sum_probs=19.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .++|+|.+|+|||||++.|.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.20  E-value=0.011  Score=47.54  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..|+|+|.||+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4588999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.19  E-value=0.01  Score=52.03  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568999999999999999999753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.17  E-value=0.0061  Score=54.94  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|.+|+|||||++.|.+-.
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            35679999999999999999998743

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.17  E-value=0.037  Score=52.58  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=36.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc-----------------CCccccCCCC-cccccceE-------------EEEEEeecc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPRP-GVTRVLKY-------------VSQFFLLKY  266 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~-----------------~~~~~vs~~p-GtTr~~~~-------------v~~~~~~~~  266 (275)
                      .-|+|+|.+++|||+|+|.|++                 .....+++.. -+|+++--             -...+++++
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT  147 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT  147 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence            4578999999999999997752                 1234443322 24555421             124788888


Q ss_pred             ccccccc
Q 023932          267 HQKCKVT  273 (275)
Q Consensus       267 ~~~~~~~  273 (275)
                      .|..+.+
T Consensus       148 EG~~d~~  154 (457)
T 4ido_A          148 QGTFDSQ  154 (457)
T ss_dssp             CCBTCTT
T ss_pred             cCCCCcc
Confidence            8877664

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.17  E-value=0.0091  Score=52.94  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999999743

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.16  E-value=0.0096  Score=51.80  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++|+|.+|+|||||++.|.+-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446899999999999999999984

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.15  E-value=0.0095  Score=51.98  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      +..++|+|..|+|||||++.|.+-..
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            44689999999999999999997543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.14  E-value=0.0095  Score=51.50  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999999753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.13  E-value=0.011  Score=47.63  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +..++++|.+|+|||||.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.13  E-value=0.011  Score=48.95  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..++|+|.+|+|||||.+.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.12  E-value=0.013  Score=47.68  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +..|.++|.||+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999974

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.10  E-value=0.0099  Score=52.74  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4568999999999999999999753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.08  E-value=0.011  Score=51.93  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4568999999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.07  E-value=0.011  Score=47.13  Aligned_cols=22  Identities=23%  Similarity=0.078  Sum_probs=19.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .|+|+|.||+||||+.+.|.++
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.07  E-value=0.012  Score=51.11  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=21.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++++|.+|+|||||++.|.+-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.05  E-value=0.011  Score=49.58  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...++|+|.+|+||||+.+.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.04  E-value=0.012  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +-.++|+|.+|+|||||+++|.+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH
Confidence            34689999999999999999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.04  E-value=0.011  Score=51.70  Aligned_cols=25  Identities=28%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.03  E-value=0.0093  Score=50.56  Aligned_cols=30  Identities=13%  Similarity=-0.048  Sum_probs=24.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPR  248 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~  248 (275)
                      ..++++|..|+|||||++.|.+- ....+.+
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            36899999999999999999976 4444443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.98  E-value=0.016  Score=48.09  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++|+|.+|+|||||.+.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3567999999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.93  E-value=0.013  Score=52.81  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+..++|+|.+|+|||||++.|.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34678999999999999999999863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.87  E-value=0.015  Score=51.91  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|..|+|||||++.|.+-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34578999999999999999999754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=94.85  E-value=0.026  Score=56.45  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...+|+|+|.+|+|||||+++|+.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999975

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.82  E-value=0.014  Score=47.30  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +..++++|.||+||||+.+.|.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999974

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.81  E-value=0.015  Score=46.78  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=20.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-|.++|.||+||||+.+.|.++
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.79  E-value=0.014  Score=48.26  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=21.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...|+|+|.+|+|||||.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            446999999999999999999754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.75  E-value=0.015  Score=47.08  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..|+|.|.||+||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.75  E-value=0.033  Score=49.58  Aligned_cols=26  Identities=15%  Similarity=0.025  Sum_probs=22.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+..|+|+|.+|+|||||.+.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999998753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.74  E-value=0.016  Score=53.62  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            4568999999999999999999754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.72  E-value=0.017  Score=47.64  Aligned_cols=23  Identities=30%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +..|+|.|.||+||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999999975

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.70  E-value=0.028  Score=45.50  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++++|..|+|||||++.|.+..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999998754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.68  E-value=0.018  Score=48.15  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +.-++|+|.+|+|||||++.|.+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999986

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.66  E-value=0.019  Score=47.55  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=21.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..|+|.|.+|+||||+.+.|.+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            567999999999999999999753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.64  E-value=0.021  Score=47.50  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+..++|+|.+|+|||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.64  E-value=0.017  Score=47.83  Aligned_cols=24  Identities=29%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...++|+|.||+||||+.+.|.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            347899999999999999999753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.63  E-value=0.018  Score=47.30  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..|+|.|.+|+||||+.+.|.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.60  E-value=0.013  Score=53.51  Aligned_cols=25  Identities=36%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..+++|+|.+|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.60  E-value=0.018  Score=49.38  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++|+|.+|+|||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.57  E-value=0.021  Score=47.27  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +..|+|.|.+|+||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999985

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.56  E-value=0.018  Score=50.68  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|..|+|||||++.|.+-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468999999999999999999753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.50  E-value=0.022  Score=50.96  Aligned_cols=25  Identities=28%  Similarity=0.183  Sum_probs=22.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++|+|.+|+|||||++.|.+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.50  E-value=0.037  Score=49.55  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ..+..++++|.+|+|||||++.|.+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999999985

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.48  E-value=0.018  Score=52.74  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++|+|.+|+|||||+|+|++.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999964

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.42  E-value=0.021  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++.|+|+|.||+||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.40  E-value=0.026  Score=46.18  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=22.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..|+|+|.+|+||||+.+.|.+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4568999999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.39  E-value=0.021  Score=51.26  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+..++|+|.+|+|||||++.|.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            456899999999999999999984

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.39  E-value=0.022  Score=46.57  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..++++|.||+||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.36  E-value=0.019  Score=52.03  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+|.+|+|||||+|+|.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999964

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.34  E-value=0.022  Score=47.82  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+..|+|+|.||+||||+.+.|..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.33  E-value=0.022  Score=47.13  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..++|+|.+|+||||+.+.|.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~lg   26 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDLG   26 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCC
Confidence            358999999999999999997543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.31  E-value=0.024  Score=46.84  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..++.|+|+|.||+||||+.+.|...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678999999999999999999753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.28  E-value=0.024  Score=46.16  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=21.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+..++++|.+|+||||+.+.|.+
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            356789999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.28  E-value=0.024  Score=47.84  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +..|+|+|.||+||||+.+.|..+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999743

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.25  E-value=0.022  Score=45.40  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++|+|.|.||+||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	6e-36
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-08
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-07
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	2e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	4e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	4e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	4e-07
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	9e-07
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	3e-06
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	4e-06
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	5e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	7e-06
d1jala1	278	c.37.1.8 (A:1-278) YchF GTP-binding protein N-term	9e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	5e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-04
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	3e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-04
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	5e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.002
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.002
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.003
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.004
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	0.004
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	0.004
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	0.004
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.004

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score =  127 bits (319), Expect = 6e-36
 Identities = 60/153 (39%), Positives = 97/153 (63%)

Query: 106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165
           H+AK  +E+ ++LKL+D+V E+ DARIP+S+ +P+++  L N+ RI++LN+ D    A  
Sbjct: 1   HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVT 60

Query: 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225
             W  +F  QG + +  N   G G  ++   +K +  +   + R+KG+ PRA+RA I+G 
Sbjct: 61  QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGI 120

Query: 226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258
           PNVGKS+LINRL K+ +     RPG+T   ++V
Sbjct: 121 PNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 153

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT 273
            IVG PNVGKS+L+N+LL +++   + +   TR                    
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKC 270
            IVG PNVGKS+L N+L+K++        GVTR     +  +  K  +  
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV 53

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
              G  NVGKS+LI RL  +++     RPGVTR
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTR 35

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
           SK  +  A++  IVG PNVGKS+L N +L +     +P PG
Sbjct: 1   SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG 41

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           G+VG+P+VGKS+L++ +   +   A        
Sbjct: 5   GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV 37

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           R  IVG PNVGKS+L+NRLL          PG TR
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTR 36

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           G+VGYPN GKSSL+  + +     A        
Sbjct: 5   GLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS 37

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
            IVG PNVGKS+L+N LL  ++ P +PRP 
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQ 38

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 45.5 bits (106), Expect = 9e-07
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           ++  I G PN GKSSL+N L  R         G TR
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 37

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           G+VG PNVGKS+  +      +   A  P  T
Sbjct: 4   GVVGKPNVGKSTFFSAATLVDV-EIANYPFTT 34

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247
            G    +   +    ++    + +     ++   ++G   VGKSS +N ++  R+   +P
Sbjct: 5   SGINTFAPATQTKLLELLGNLKQED--VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP 62

Query: 248 RPGVT 252
                
Sbjct: 63  FQSEG 67

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
           + GIVG PNVGKS+    + K  +   A  P  T
Sbjct: 12  KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 45

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 11/43 (25%), Positives = 14/43 (32%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLL 264
           I G  N GK+SL+  L    + P            Y      L
Sbjct: 8   IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTL 50

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
             + GIVG PNVGKS+L N L K  +  AA  P  T
Sbjct: 2   GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCT 36

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC 243
              +     G  N GKSS +N L  ++  
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSL 42

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-RRMCPAAPRP 249
           MK+++ ++ + S V  ++  +G LP      + G  NVGKSS IN L+  + +   + +P
Sbjct: 1   MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56

Query: 250 GVT 252
           G T
Sbjct: 57  GKT 59

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 1/64 (1%)

Query: 206 VKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVSQFFLL 264
           +    K +    +   + G    GKSS IN L         A + GV  V      +   
Sbjct: 45  ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 104

Query: 265 KYHQ 268
               
Sbjct: 105 NIPN 108

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 15/46 (32%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYH 267
            VG  + GK+ L  RLL  +          +  +  V+        
Sbjct: 5   FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLT 50

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR------RMCPAAP 247
           SR  +  A    +           +R G+ G P  GKS+ +            ++   A 
Sbjct: 31  SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 90

Query: 248 RPGVTR 253
            P    
Sbjct: 91  DPSSPV 96

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFL 263
           + R +R  I+G    GK++++ RL    +    P  G             
Sbjct: 2   MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKF 51

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 221 GIVGYPNVGKSSLINRLLKR 240
            +VGY + GK++L+ + +  
Sbjct: 5   QVVGYKHSGKTTLMEKWVAA 24

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (84), Expect = 8e-04
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKC 270
            +G  N GK++L++ L   R+    P    T     +       +    
Sbjct: 5   FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGG 53

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 221 GIVGYPNVGKSSLINRLLKR 240
               +   GK++L+ +L+  
Sbjct: 6   AFAAWSGTGKTTLLKKLIPA 25

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 204 VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC 243
           +++ R+ K    + VR  ++G  N GK++L+ +L    + 
Sbjct: 3   LSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS 42

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241
           P+A++  +VG   VGK+ L+       
Sbjct: 3   PQAIKCVVVGDGAVGKTCLLISYTTNA 29

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
           ++G  N GK++++ +     
Sbjct: 7   MLGLDNAGKTTILKKFNGED 26

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 222 IVGYPNVGKSSLINRLLKRR 241
           I+G   VGK+SL+N+ + ++
Sbjct: 7   ILGDSGVGKTSLMNQYVNKK 26

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254
           IVG  N GK++++ +     +   +P  G    
Sbjct: 20  IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 52

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 222 IVGYPNVGKSSLINRLLKRRM 242
           +VG    GK++ +N +   + 
Sbjct: 7   LVGLQYSGKTTFVNVIASGQF 27

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
           GL  +  +   +G  N GK++L++ L   R+    P    T 
Sbjct: 8   GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS 49

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 218 VRAGIVGYPNVGKSSLINRLLKRR 241
           +  GI G+ + GK++L   L +  
Sbjct: 6   INLGIFGHIDHGKTTLSKVLTEIA 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	100.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.84
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.35
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.34
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.24
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.19
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.15
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.04
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.0
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.99
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.97
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.95
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.92
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.91
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.88
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.83
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.8
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.76
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.73
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.73
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.7
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.65
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.63
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.58
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.54
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.48
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.48
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.48
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.47
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.46
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.45
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.44
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.44
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.43
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.4
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.38
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.37
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.35
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.34
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.29
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.28
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.28
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.26
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.24
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.22
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.2
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.18
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.18
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.15
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.09
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.08
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.06
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.06
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.06
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.01
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.01
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.99
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.97
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.96
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.93
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.92
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.9
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.82
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.77
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.77
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.76
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.74
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.72
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.71
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.66
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.65
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.57
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.55
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.55
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.49
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.45
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.45
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.44
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.43
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.42
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.36
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.36
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.33
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.32
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.31
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.18
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.16
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.16
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.09
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.06
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.03
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.99
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.95
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.86
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.77
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.75
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.73
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.69
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.65
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.6
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.49
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.4
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	96.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.35
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.28
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.28
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.17
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.14
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.09
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.05
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.89
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.87
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.84
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.84
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.79
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.78
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.67
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.61
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.52
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.43
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.37
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.3
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.28
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.22
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.21
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.2
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.15
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.06
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.05
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	94.99
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.94
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.86
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.81
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.77
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.75
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.74
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.69
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.61
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.41
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.4
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.34
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.27
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.26
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.12
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.1
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.9
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.71
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.71
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.67
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.63
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.25
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.11
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.09
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.93
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.93
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.93
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.87
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.51
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	92.15
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.07
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.01
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.58
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.43
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	91.28
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.24
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	90.98
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.77
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.75
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	90.69
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	90.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	90.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	90.01
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	89.75
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.52
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	89.5
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	89.43
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.36
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.14
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.11
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.03
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	88.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	88.65
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	88.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	88.11
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.06
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	87.87
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.39
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	87.35
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	87.09
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.04
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	86.76
d1okkd2	207	GTPase domain of the signal recognition particle r	86.48
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	86.45
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	86.27
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	86.07
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	85.91
d1vmaa2	213	GTPase domain of the signal recognition particle r	85.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	85.86
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.57
d1xzpa1	173	TrmE connector domain {Thermotoga maritima [TaxId:	85.56
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	85.24
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.82
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	84.25
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	83.82
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.76
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	83.63
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	83.47
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	83.19
d1j8yf2	211	GTPase domain of the signal sequence recognition p	83.07
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.88
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	82.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.7
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	80.44
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	80.37
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	80.04

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.8e-35  Score=261.80  Aligned_cols=166  Identities=37%  Similarity=0.613  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCc
Q 023932          106 HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       106 ~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ||+++.+++++.++.+|+||+|+|||.|+++.++.+.+++.++|+|+|+||+||++....++|.++|.+.+..++++|+.
T Consensus         1 Hm~ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           1 HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTT
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecc
Confidence            89999999999999999999999999999999999999999999999999999999998899999998888889999999


Q ss_pred             cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE---EE
Q 023932          186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ---FF  262 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~---~~  262 (275)
                      ++.|...+...+.++..+.......++.....++++|||+||||||||||+|++++++.|++.||+||+.+++..   ++
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~  160 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELE  160 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEE
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeE
Confidence            999999998888777766555555666677889999999999999999999999999999999999999999984   89


Q ss_pred             eeccccccc
Q 023932          263 LLKYHQKCK  271 (275)
Q Consensus       263 ~~~~~~~~~  271 (275)
                      ++++||...
T Consensus       161 l~DTPGi~~  169 (273)
T d1puja_         161 LLDTPGILW  169 (273)
T ss_dssp             EEECCCCCC
T ss_pred             EecCCCccc
Confidence            999999753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=6.4e-21  Score=164.35  Aligned_cols=138  Identities=18%  Similarity=0.244  Sum_probs=106.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH--HcCCeeEEecCccccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA--KQGTKVIFSNGQLGMG  189 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~--~~g~~vi~iSak~g~G  189 (275)
                      .++++|.+++|+.+..|... ...+.++|.     +.+.+||+||+||.+..+.+.+...+.  ..++.++.+|++++.|
T Consensus         7 ~vANiD~vliV~s~~~P~~~-~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g   85 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETS-TYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG   85 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCC-HHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             CcccCCEEEEEEeCCCCCCC-HHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchh
Confidence            45899999999988876433 345666653     889999999999998776666655443  3457899999999999


Q ss_pred             hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE---
Q 023932          190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS---  259 (275)
Q Consensus       190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~---  259 (275)
                      +++|+++++   .               .+.+++|.+|||||||||+|++.....|+++.       +||++.+.+.   
T Consensus        86 ~~~L~~~l~---~---------------kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~  147 (225)
T d1u0la2          86 IEELKEYLK---G---------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF  147 (225)
T ss_dssp             HHHHHHHHS---S---------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT
T ss_pred             HhhHHHHhc---C---------------CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC
Confidence            998887752   1               25789999999999999999988777777665       7999999998   


Q ss_pred             EEEeeccccccccc
Q 023932          260 QFFLLKYHQKCKVT  273 (275)
Q Consensus       260 ~~~~~~~~~~~~~~  273 (275)
                      ..++.++||+-.+.
T Consensus       148 gg~iiDTPG~r~~~  161 (225)
T d1u0la2         148 GGYVVDTPGFANLE  161 (225)
T ss_dssp             SCEEESSCSSTTCC
T ss_pred             CcEEEeCCcccccc
Confidence            47999999986553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.2e-20  Score=163.06  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHH----HHHHHHHHHcCCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADR----NAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~----~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      .++++|.+++|+.+.+|. .....+.++|.     +.+.+||+||+||.+..+.    ..+.+.+...|++++.+|++++
T Consensus         7 ~vANiD~~~iV~s~~~P~-~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             TEECCCEEEEEEESTTTT-CCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             CccccCEEEEEEECCCCC-CCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            468999999999998874 33445666653     7899999999999865443    3455566677899999999999


Q ss_pred             cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE-
Q 023932          188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS-  259 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~-  259 (275)
                      .|+++|++.++   .               .+.+++|.+|||||||||+|++.....|+++.       +||+..+.+. 
T Consensus        86 ~gl~~L~~~l~---~---------------~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~  147 (231)
T d1t9ha2          86 DSLADIIPHFQ---D---------------KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT  147 (231)
T ss_dssp             TTCTTTGGGGT---T---------------SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred             hHHHHHHHhhc---c---------------ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEec
Confidence            99998876542   1               24679999999999999999998777777766       6888887765 


Q ss_pred             -EEEeecccccccc
Q 023932          260 -QFFLLKYHQKCKV  272 (275)
Q Consensus       260 -~~~~~~~~~~~~~  272 (275)
                       ..++.++||+-.+
T Consensus       148 ~gg~iiDTPG~r~~  161 (231)
T d1t9ha2         148 SGGLVADTPGFSSL  161 (231)
T ss_dssp             TTEEEESSCSCSSC
T ss_pred             CCCEEEECCccccc
Confidence             3578899998654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.35  E-value=5.5e-13  Score=109.51  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHH
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA  167 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~  167 (275)
                      .+.+.+....+-+.||| ..+.+.+...+..+|++++|+|++.+.......+..++.  ++|+++|+||+|+...++.+.
T Consensus        53 ~~~~~~~~~~~~d~~g~-~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~  131 (179)
T d1wb1a4          53 AFKLENYRITLVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKR  131 (179)
T ss_dssp             EEEETTEEEEECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHH
T ss_pred             ccccCCccccccccccc-cccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHH
Confidence            33443333344566787 567778888999999999999999887655555555544  789999999999988754332


Q ss_pred             HH---HHHHHc-----CCeeEEecCccccchhhHHHHHHHHhch
Q 023932          168 WA---TYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       168 ~~---~~~~~~-----g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ..   +.+.+.     ..+++++||++|.|+++|++.|.+..++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         132 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            22   222221     2478999999999999999998876654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=1.8e-12  Score=105.80  Aligned_cols=120  Identities=13%  Similarity=0.024  Sum_probs=85.0

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCH
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISM  162 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~  162 (275)
                      ...+..||+..... .-......+.+.+...++++|+||+|+|++.+....+..+..++.    ++|+++|+||+|+...
T Consensus        52 ~~~~~~~DtpG~~~-~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          52 RRQIVFVDTPGLHK-PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY  130 (178)
T ss_dssp             TEEEEEEECCCCCC-CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred             eeeeeecccccccc-cccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccC
Confidence            34566776443211 112223445667777889999999999999987776666666654    6799999999999765


Q ss_pred             HHHHHHHHHHHHc-C-CeeEEecCccccchhhHHHHHHHHhchhhhhhh
Q 023932          163 ADRNAWATYFAKQ-G-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRR  209 (275)
Q Consensus       163 ~~~~~~~~~~~~~-g-~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~  209 (275)
                      .+  ++.+.+.+. + ..++++||++|.|+++|.+.|.+.+++.++.++
T Consensus       131 ~~--~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe~p~~~p  177 (178)
T d1wf3a1         131 PE--EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYP  177 (178)
T ss_dssp             HH--HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSC
T ss_pred             HH--HHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCC
Confidence            43  333444432 2 578999999999999999999888876655543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=1.1e-11  Score=102.32  Aligned_cols=92  Identities=14%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-----CCeeEEec
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSN  183 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-----g~~vi~iS  183 (275)
                      .....+....+|+|++|+|++.+....+..+.+++.  ++|+++|+||+|+.+..+.++..+.+.+.     ...++++|
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             HhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            344445567789999999999888777777777775  78999999999998776665555544331     25789999


Q ss_pred             CccccchhhHHHHHHHHhc
Q 023932          184 GQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~  202 (275)
                      |++|.|+++|.+.|.++..
T Consensus       176 A~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHhC
Confidence            9999999999999887653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=5e-11  Score=96.22  Aligned_cols=95  Identities=14%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecC
Q 023932          108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNG  184 (275)
Q Consensus       108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSa  184 (275)
                      ..........+..+|++++++|++.+....+..+..++.  ++|+++|+||+|+....+. +....+.+.+ .+++++||
T Consensus        68 ~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~-~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          68 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFER-EVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHH-HTHHHHGGGSSCSCEECBT
T ss_pred             cccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhh-HHHHHHHhcCCCCeEEEec
Confidence            344556667789999999999999887777777766665  8999999999999865432 2223333333 46899999


Q ss_pred             ccccchhhHHHHHHHHhch
Q 023932          185 QLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~~  203 (275)
                      ++|.|+++|++.|.+..++
T Consensus       147 k~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCC
Confidence            9999999999988776654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=7.2e-12  Score=102.16  Aligned_cols=93  Identities=22%  Similarity=0.213  Sum_probs=71.2

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEec
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iS  183 (275)
                      ..++...+..+|++++++|+.............++       .++|+++|+||+|+......+...+.+.+.+..++++|
T Consensus        70 ~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iS  149 (180)
T d1udxa2          70 GLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVS  149 (180)
T ss_dssp             CHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             HHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEE
Confidence            34566778999999999998654322211222222       15899999999999988877777777777788999999


Q ss_pred             CccccchhhHHHHHHHHhch
Q 023932          184 GQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~~  203 (275)
                      |++|.|+++|++.|.++...
T Consensus       150 A~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         150 ALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=2.8e-10  Score=92.18  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             HHHHHHhhcCeEEEEEeCCC-----------CCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH-HHH-HHHHHHHcC-
Q 023932          113 ELKDQLKLMDVVIEVRDARI-----------PLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-RNA-WATYFAKQG-  176 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~-----------p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~-~~~~~~~~g-  176 (275)
                      .+...++.+|++++|+|++.           .....+..+.+++.  ++|+++|+||+|++...+ ... +.+.+ ... 
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-~~~~  152 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKF-EVPL  152 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHH-TCCG
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHh-cccc
Confidence            34455688999999999864           34444555656554  789999999999875432 111 11222 111 


Q ss_pred             ----CeeEEecCccccchhhHHHHHHHHhch
Q 023932          177 ----TKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       177 ----~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                          ..++++||++|.|+++|++.|.++.++
T Consensus       153 ~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         153 SEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                247889999999999999998877653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.00  E-value=3.4e-10  Score=98.16  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      ..++|+++|.||||||||+|+|++++.+.+++.+++||+.+...      .+.+.++||+.+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~   92 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE   92 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccC
Confidence            46899999999999999999999999999999999999988775      357778888754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.1e-10  Score=91.03  Aligned_cols=42  Identities=36%  Similarity=0.438  Sum_probs=38.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV  258 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v  258 (275)
                      ++||+++|.||||||||||+|++++...++..||+|++....
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~   42 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLRE   42 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEee
Confidence            368999999999999999999999888899999999997653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.97  E-value=1.3e-09  Score=90.84  Aligned_cols=102  Identities=19%  Similarity=0.117  Sum_probs=71.9

Q ss_pred             ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---cCCCeEEEEEcccCcCHHHHHHHHHHHH--
Q 023932          100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADRNAWATYFA--  173 (275)
Q Consensus       100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L---~~kp~IlVlNK~Dl~~~~~~~~~~~~~~--  173 (275)
                      +-+.||| ..+.+.+...+..+|++|+|+|++.+..... .+...++   .-+++|+++||+|+....+.......+.  
T Consensus        90 iiD~PGH-~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~  168 (205)
T d2qn6a3          90 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF  168 (205)
T ss_dssp             EEECSCH-HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EeccchH-HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHHHH
Confidence            4467999 6788888888899999999999998753321 2222222   2357888899999987654333222222  


Q ss_pred             --Hc---CCeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 --KQ---GTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 --~~---g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                        ..   ...++++||++|.|+++|.+.|.++.+
T Consensus       169 l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         169 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence              11   246899999999999999988877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=1.1e-09  Score=86.74  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM  191 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~  191 (275)
                      +++...+.++|+|++|+|++++....+..+...+...++++++||+|+.+....++....+ ....+++++||++|.|++
T Consensus        72 ~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~-~~~~~~~~vSA~~g~gi~  150 (160)
T d1xzpa2          72 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE  150 (160)
T ss_dssp             HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHHHHHh-CCCCcEEEEECCCCCCHH
Confidence            4566678999999999999998777777777777788999999999998765544443333 234679999999999999


Q ss_pred             hHHHHHHH
Q 023932          192 KLSRLAKA  199 (275)
Q Consensus       192 ~L~~~i~~  199 (275)
                      +|++.|.+
T Consensus       151 ~L~~~I~k  158 (160)
T d1xzpa2         151 KLEESIYR  158 (160)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887643

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=1.7e-10  Score=91.52  Aligned_cols=53  Identities=38%  Similarity=0.471  Sum_probs=44.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE------EEeecccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ------FFLLKYHQKC  270 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~------~~~~~~~~~~  270 (275)
                      +||+++|.||||||||||+|++++...+++.||+|+.......      +...+++|+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~   59 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR   59 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccc
Confidence            5899999999999999999999998999999999999876652      3445666543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=6.7e-10  Score=90.39  Aligned_cols=102  Identities=16%  Similarity=0.011  Sum_probs=67.0

Q ss_pred             ccchhHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH------Hh-----cCCCeEEEEEcccCcCHHH
Q 023932          102 WYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ------WL-----GNRKRILVLNREDMISMAD  164 (275)
Q Consensus       102 ~~pG~~~------~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~------~L-----~~kp~IlVlNK~Dl~~~~~  164 (275)
                      +.||+..      ...+++...+..++.++++++..............      ..     .++|+++|+||+|+....+
T Consensus        55 DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~  134 (185)
T d1lnza2          55 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE  134 (185)
T ss_dssp             EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH
T ss_pred             cCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH
Confidence            4577532      23345666778999999999887654433222111      11     1679999999999987643


Q ss_pred             HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932          165 RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       165 ~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                      ..+........+.+++++||++|.|+++|.+.|.+.+++
T Consensus       135 ~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         135 NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            222111111234678999999999999999988777654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.91  E-value=3.1e-09  Score=87.72  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHH---hcCCCeEEEEEcccCcCHHHHHHHH----HHHH
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQW---LGNRKRILVLNREDMISMADRNAWA----TYFA  173 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~---L~~kp~IlVlNK~Dl~~~~~~~~~~----~~~~  173 (275)
                      +.||| ..+.+.+...+..+|.+++|+|+..+..... .+....   +...++++++||+|+.+.....+..    +++.
T Consensus        84 DtPGh-~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~  162 (195)
T d1kk1a3          84 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE  162 (195)
T ss_dssp             ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ccchh-hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhc
Confidence            56998 6778888888899999999999998753321 122222   2234578889999998875433222    2222


Q ss_pred             HcC---CeeEEecCccccchhhHHHHHHHHhc
Q 023932          174 KQG---TKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       174 ~~g---~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      ..+   ..++++||++|.|+++|++.+.++.+
T Consensus       163 ~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         163 GTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            222   46899999999999999998877643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=6.1e-10  Score=98.33  Aligned_cols=42  Identities=33%  Similarity=0.454  Sum_probs=38.2

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      ...++++|||.||||||||+|+|++.....++++||||.+..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn   49 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE   49 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCC
Confidence            356899999999999999999999887778999999999874

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=3.5e-10  Score=96.08  Aligned_cols=101  Identities=19%  Similarity=0.123  Sum_probs=70.6

Q ss_pred             ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH---------------
Q 023932          102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------------  164 (275)
Q Consensus       102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~---------------  164 (275)
                      +.||| ..+.......+..+|++|+|+|+..+.......+..++.  ++|+|+|+||+|+.....               
T Consensus        76 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~  154 (227)
T d1g7sa4          76 DTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (227)
T ss_dssp             CCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             cccce-ecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcch
Confidence            46787 334444444568899999999999988877777777664  889999999999864220               


Q ss_pred             ----------HHHHHHHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhch
Q 023932          165 ----------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD  203 (275)
Q Consensus       165 ----------~~~~~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~~  203 (275)
                                ..+....+.+.+               ..++++||++|.|+++|++.|..+.++
T Consensus       155 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                      000111111111               257899999999999999988877643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=7.6e-09  Score=83.79  Aligned_cols=91  Identities=18%  Similarity=0.299  Sum_probs=67.3

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHHc-----CCeeEEe
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQ-----GTKVIFS  182 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~-----g~~vi~i  182 (275)
                      ..+...++.+|++++|+|+..+.......+..++.  +.|+|+|+||+|+....+  ..+..+.+.+.     ..+++++
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            45566788999999999999887766666665554  789999999999875432  23333334332     2468999


Q ss_pred             cCccccchhhHHHHHHHHhc
Q 023932          183 NGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~~  202 (275)
                      ||++|.|+++|.+.|.+...
T Consensus       163 Sa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999998876543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=1.6e-09  Score=87.97  Aligned_cols=44  Identities=41%  Similarity=0.605  Sum_probs=34.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      +.+||+|+|.+|||||||||+|++.+...+++.+++|+......
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~   50 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDE   50 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceee
Confidence            46899999999999999999999999899999999998876443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=4.3e-09  Score=85.09  Aligned_cols=53  Identities=40%  Similarity=0.524  Sum_probs=45.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      .|+++|.+|||||||||+|++.+...+++.||+|++.....      .+.+.+++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~   65 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK   65 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccc
Confidence            69999999999999999999998889999999999987643      356677777654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=3.9e-09  Score=83.45  Aligned_cols=90  Identities=13%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             chhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-HHh---c-CCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC
Q 023932          104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QWL---G-NRKRILVLNREDMISMADRNAWATYFAK-QGT  177 (275)
Q Consensus       104 pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~-~~L---~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~  177 (275)
                      +.......+.....+..+|++++++|+.......+..+. .++   . ++|+++|+||+|+.....      .+.+ .+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~------~~~~~~~~  137 (161)
T d2gj8a1          64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------GMSEVNGH  137 (161)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------EEEEETTE
T ss_pred             ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH------HHHHhCCC
Confidence            444455667777889999999999999887665544432 222   2 789999999999865421      0111 235


Q ss_pred             eeEEecCccccchhhHHHHHHH
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      +++++||++|.|+++|.+.|.+
T Consensus       138 ~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         138 ALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            7999999999999999988765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=3.7e-09  Score=84.85  Aligned_cols=53  Identities=36%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK  271 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~  271 (275)
                      +|+++|.||||||||||+|++.....+++.+|+|+......      .+...++++++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~   60 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD   60 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceee
Confidence            58999999999999999999988888999999999876543      244555665543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.73  E-value=1e-08  Score=85.24  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=71.7

Q ss_pred             EeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---cCCCeEEEEEcccCcCHHHH-H--
Q 023932           93 WTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNRKRILVLNREDMISMADR-N--  166 (275)
Q Consensus        93 ~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~~kp~IlVlNK~Dl~~~~~~-~--  166 (275)
                      |......+-+-||| ..+.+.+...+..+|++|+|||+..+......+...++   ..+++|+++||+|+....+. +  
T Consensus        63 ~~~~~~~~iDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i  141 (196)
T d1d2ea3          63 TAARHYAHTDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELV  141 (196)
T ss_dssp             CSSCEEEEEECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred             eceeeEEeecCcch-HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHH
Confidence            33334445677999 56777788888999999999999998776555544443   24578889999999864322 1  


Q ss_pred             --HHHHHHHHcC-----CeeEEecCccc----------cchhhHHHHHHHH
Q 023932          167 --AWATYFAKQG-----TKVIFSNGQLG----------MGTMKLSRLAKAL  200 (275)
Q Consensus       167 --~~~~~~~~~g-----~~vi~iSak~g----------~Gi~~L~~~i~~l  200 (275)
                        +..+++...+     ..++++||++|          .++.+|++.|.+.
T Consensus       142 ~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              2223333333     45899999988          3556666655443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=4.3e-09  Score=84.57  Aligned_cols=39  Identities=38%  Similarity=0.548  Sum_probs=34.7

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      .|+|+|.||||||||||+|++.+...++..++||+....
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~   45 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV   45 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEE
Confidence            489999999999999999999988889988888887653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=6.7e-08  Score=77.18  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHH----cC--CeeEEecCccccc
Q 023932          118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK----QG--TKVIFSNGQLGMG  189 (275)
Q Consensus       118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~----~g--~~vi~iSak~g~G  189 (275)
                      ...++.++.+.|+.......+......+.  ..+.++++||+|+....+..+..+.+.+    .+  .+++++||++|.|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~G  175 (188)
T d1puia_          96 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG  175 (188)
T ss_dssp             CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred             hhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence            34555667777777665554444444332  7789999999999987655444333332    22  4789999999999


Q ss_pred             hhhHHHHHHHHh
Q 023932          190 TMKLSRLAKALA  201 (275)
Q Consensus       190 i~~L~~~i~~l~  201 (275)
                      +++|++.|.++.
T Consensus       176 id~L~~~i~~~~  187 (188)
T d1puia_         176 VDKLRQKLDTWF  187 (188)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=1.6e-08  Score=92.81  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=41.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC----ccccCCCCcccccceEEE-----EEEeecccccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR----MCPAAPRPGVTRVLKYVS-----QFFLLKYHQKCKV  272 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~----~~~vs~~pGtTr~~~~v~-----~~~~~~~~~~~~~  272 (275)
                      .+++|+|+|.||||||||||+|++..    .+....+.+||++...+.     .+.+.+++|+-..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~  120 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST  120 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccc
Confidence            46899999999999999999999743    344556778999988776     2667788886543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=6.6e-09  Score=83.29  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      +...+|+|+|+||||||||+|+|++.+........++|+...
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~   55 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI   55 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeec
Confidence            346899999999999999999999887666666666665553

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=1.1e-08  Score=83.70  Aligned_cols=42  Identities=36%  Similarity=0.660  Sum_probs=26.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~  259 (275)
                      .+|+|+|.||||||||||+|++++ ...+++.+++|++.....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~   66 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI   66 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc
Confidence            489999999999999999999865 358899999999887665

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.58  E-value=2.5e-08  Score=79.92  Aligned_cols=91  Identities=13%  Similarity=0.095  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcC
Q 023932          109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQG  176 (275)
Q Consensus       109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g  176 (275)
                      .........++.+|.+|+|+|+.+..+..+.  .+.....     ++|+++|+||+|+.+........+.+.     ...
T Consensus        72 ~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  151 (176)
T d1fzqa_          72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRV  151 (176)
T ss_dssp             GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC
T ss_pred             cchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcC
Confidence            3445556688999999999999865333221  1222222     579999999999976543333333221     123


Q ss_pred             CeeEEecCccccchhhHHHHHHH
Q 023932          177 TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       177 ~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ..++.+||++|.|++++.++|.+
T Consensus       152 ~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         152 WQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHh
Confidence            46889999999999998887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.8e-08  Score=79.81  Aligned_cols=103  Identities=10%  Similarity=-0.013  Sum_probs=68.0

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---hcCCCeEEEEEcccCcCH
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LGNRKRILVLNREDMISM  162 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L~~kp~IlVlNK~Dl~~~  162 (275)
                      ..+..|++..        . ..........++.+|++++|+|..++.+....  .+...   ..+.|+++|.||+|+...
T Consensus        52 ~~l~i~D~~g--------~-~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          52 IKFNVWDTAG--------Q-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             EEEEEEECTT--------H-HHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCS
T ss_pred             cccccccccc--------c-cccceecchhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhh
Confidence            4577887443        2 22222223467899999999999886544321  12111   237899999999999765


Q ss_pred             HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ....+...+..+.+..++.+||++|.|++++.+.|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_         123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             CCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            4333333444456678999999999999998766553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.7e-08  Score=76.59  Aligned_cols=103  Identities=15%  Similarity=0.002  Sum_probs=63.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----c--CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----G--NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L----~--~kp~IlVlNK~Dl~  160 (275)
                      ..+..|+.        ||+ ..........++.+|++|+|+|..++.+..+. .+...+    .  +.|+++|.||+|+.
T Consensus        48 ~~l~i~D~--------~g~-e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  118 (168)
T d2gjsa1          48 ASLMVYDI--------WEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  118 (168)
T ss_dssp             EEEEEEEC--------C--------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG
T ss_pred             cceeeeec--------ccc-cccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchh
Confidence            45667763        443 23333344578999999999998765333221 111111    1  46899999999987


Q ss_pred             CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ...+  ..+..++....+..++.+||++|.|++++.+.|.+
T Consensus       119 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1         119 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             GGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            5421  12333344456788999999999999998776543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.2e-07  Score=75.65  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCc--HHH---HHHh---cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEec
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTH--PLM---DQWL---GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d--~~l---~~~L---~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iS  183 (275)
                      ....++.+|++|+|+|..++.+..+  ..+   .+..   .+.|++||.||+|+....+  .++..++.++.+..++.+|
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~S  146 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS  146 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEc
Confidence            3456789999999999976533222  111   1111   2579999999999864321  1233334455678899999


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      |++|.|++++.+.|.++.
T Consensus       147 ak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         147 AKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             TTTTBSHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999987766654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=9.6e-08  Score=75.87  Aligned_cols=83  Identities=8%  Similarity=-0.024  Sum_probs=58.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhcCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      ..++++|++++|+|..++.+..+.     ++.+...+.|+++|.||+|+.....  .++..++.++.+..++++||++|.
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~  149 (164)
T d1z2aa1          70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL  149 (164)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             hhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCc
Confidence            467899999999999875433221     1222234789999999999865421  123333444567789999999999


Q ss_pred             chhhHHHHHH
Q 023932          189 GTMKLSRLAK  198 (275)
Q Consensus       189 Gi~~L~~~i~  198 (275)
                      |++++.+.|.
T Consensus       150 ~v~e~f~~l~  159 (164)
T d1z2aa1         150 NVSEVFKYLA  159 (164)
T ss_dssp             SSHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999876653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.48  E-value=3e-08  Score=80.18  Aligned_cols=87  Identities=11%  Similarity=0.022  Sum_probs=58.7

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEec
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN  183 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iS  183 (275)
                      ..+..+|++++|+|+.+..+..+  ..+...+.     +.|+++|.||+|+.......+....+.     ..+..++.+|
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S  159 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  159 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence            35689999999999987654432  12333332     579999999999965322222222221     1235689999


Q ss_pred             CccccchhhHHHHHHHHhc
Q 023932          184 GQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~~  202 (275)
                      |++|.|++++.++|.+...
T Consensus       160 A~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         160 AIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             GGGTBTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999888766554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.48  E-value=1.2e-07  Score=80.25  Aligned_cols=92  Identities=13%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C-CCeEEEEEcccCcCHHH------HHHHH
Q 023932           99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMAD------RNAWA  169 (275)
Q Consensus        99 ~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~~------~~~~~  169 (275)
                      .+-+-||| ..+...+..-+..+|.+++|+|+..+......+....+.  + +.+|+++||+|+.+..+      .++..
T Consensus        92 ~iiD~PGH-~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~  170 (222)
T d1zunb3          92 IIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYL  170 (222)
T ss_dssp             EEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred             EEEeccch-hhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHh
Confidence            35567999 667777888889999999999999887665444433332  5 45788999999986321      12333


Q ss_pred             HHHHHcC-----CeeEEecCccccchh
Q 023932          170 TYFAKQG-----TKVIFSNGQLGMGTM  191 (275)
Q Consensus       170 ~~~~~~g-----~~vi~iSak~g~Gi~  191 (275)
                      .++.+.+     +.++++||.+|.|+.
T Consensus       171 ~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         171 KFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhHhhccCCCceEEEEEEcccCccCC
Confidence            3444433     256899999999884

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.48  E-value=1.1e-07  Score=75.61  Aligned_cols=103  Identities=8%  Similarity=0.033  Sum_probs=67.2

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..|+        +||+ ..........+..+|.+++|+|+.+..+..  ...+..++.     +.|++||+||+|+.
T Consensus        47 ~~~~i~D--------~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~  117 (164)
T d1zd9a1          47 VTIKLWD--------IGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP  117 (164)
T ss_dssp             EEEEEEE--------ECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             EEEEEee--------cccc-ccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccc
Confidence            3466776        4565 444455556789999999999987643221  112222322     67999999999987


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ......+..+.+.     ..+..++++||++|.|++++.++|.+
T Consensus       118 ~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence            5433333333322     12346889999999999998887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=5.3e-08  Score=77.92  Aligned_cols=90  Identities=12%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             hhcCeEEEEEeCCCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCH-HHHHHHHHHHHH-cC-CeeEEecCccccchhhHH
Q 023932          119 KLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISM-ADRNAWATYFAK-QG-TKVIFSNGQLGMGTMKLS  194 (275)
Q Consensus       119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~-~~~~~~~~~~~~-~g-~~vi~iSak~g~Gi~~L~  194 (275)
                      ..+|+++++.|++......+.....+.. ..|.++|+||+|+... .+.....+.+.+ .+ .+++++||++|.|+++|+
T Consensus        84 ~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~  163 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA  163 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred             hhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHH
Confidence            5688899999987543333222222222 5689999999998754 333333333333 33 579999999999999999


Q ss_pred             HHHHHHhchhhhhh
Q 023932          195 RLAKALASDVNVKR  208 (275)
Q Consensus       195 ~~i~~l~~~~~~~~  208 (275)
                      +.|.+.+++.++.|
T Consensus       164 ~~i~~~lpe~~~~y  177 (179)
T d1egaa1         164 AIVRKHLPEATHHF  177 (179)
T ss_dssp             HHHHTTCCBCCCSS
T ss_pred             HHHHHhCCCCCCCC
Confidence            99988877655444

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=7.9e-08  Score=76.83  Aligned_cols=86  Identities=12%  Similarity=-0.052  Sum_probs=57.9

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...++.+|++|+|+|..++.+.... .+....     .+.|+++|.||+|+.....  .++...+.++.+..++.+||++
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  151 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD  151 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCC
Confidence            3468999999999999875332221 111111     1567888999999865421  1233334455678999999999


Q ss_pred             ccchhhHHHHHHHH
Q 023932          187 GMGTMKLSRLAKAL  200 (275)
Q Consensus       187 g~Gi~~L~~~i~~l  200 (275)
                      |.|++++.+.+.+.
T Consensus       152 g~gv~e~f~~l~~~  165 (169)
T d3raba_         152 NINVKQTFERLVDV  165 (169)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999987766543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.5e-07  Score=74.82  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=64.1

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---------CCCeEEEEEcccCcCHHH--HHHHHHH
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NRKRILVLNREDMISMAD--RNAWATY  171 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---------~kp~IlVlNK~Dl~~~~~--~~~~~~~  171 (275)
                      ++|+ .+........++++|.+|+|+|..++.+..  .+..|+.         ..|+++|.||+|+....+  .++..++
T Consensus        71 t~G~-e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~  147 (186)
T d2f7sa1          71 TAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL  147 (186)
T ss_dssp             EESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             CCcc-hhhHHHHHHHHhcCCEEEEEEeccccccce--eeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHH
Confidence            4554 444455556789999999999987643222  2333321         357889999999965421  1233344


Q ss_pred             HHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932          172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       172 ~~~~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      .++.+..++.+||++|.|++++.+.+.+.
T Consensus       148 ~~~~~~~~~e~Sak~~~~i~e~f~~l~~~  176 (186)
T d2f7sa1         148 ADKYGIPYFETSAATGQNVEKAVETLLDL  176 (186)
T ss_dssp             HHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            55567889999999999999988776654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.45  E-value=4.7e-08  Score=79.27  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=22.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP  247 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~  247 (275)
                      .++|+|+|+||+|||||+|+|++.......+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~   35 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHD   35 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC------
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecc
Confidence            4689999999999999999999765444443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.8e-07  Score=73.58  Aligned_cols=90  Identities=8%  Similarity=-0.065  Sum_probs=61.3

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEe
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFS  182 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l---~~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~i  182 (275)
                      ......+..+|++++|+|..++.+....  .+   .+..  ...|+++|.||+|+....  ..++..++.++.+..++.+
T Consensus        68 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  147 (171)
T d2erya1          68 AMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEA  147 (171)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEEC
T ss_pred             ccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEE
Confidence            3344567899999999998876433221  11   1111  157899999999986431  1233444555667889999


Q ss_pred             cCccccchhhHHHHHHHHh
Q 023932          183 NGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~~l~  201 (275)
                      ||++|.|++++...|.+..
T Consensus       148 Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         148 SAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHH
Confidence            9999999999887765544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=5.1e-08  Score=75.78  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      |++++|.||||||||+|+|.+.+...+.+..|++....
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~   39 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL   39 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEe
Confidence            78999999999999999999988888888888887443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.44  E-value=2.2e-07  Score=74.22  Aligned_cols=87  Identities=11%  Similarity=-0.040  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEE
Q 023932          111 EKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIF  181 (275)
Q Consensus       111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~  181 (275)
                      .......++++|.+++|+|..+..+....  .+..++     .+.|+++|.||+|+....  ..++...+.++.+..+++
T Consensus        66 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e  145 (168)
T d1u8za_          66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVE  145 (168)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred             hhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEE
Confidence            33445578899999999999775433221  111111     156899999999985432  123444455566788999


Q ss_pred             ecCccccchhhHHHHH
Q 023932          182 SNGQLGMGTMKLSRLA  197 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i  197 (275)
                      +||++|.|++++.+.|
T Consensus       146 ~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_         146 TSAKTRANVDKVFFDL  161 (168)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHH
Confidence            9999999999987654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=1.3e-07  Score=74.83  Aligned_cols=86  Identities=14%  Similarity=0.080  Sum_probs=55.6

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---hc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEec
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iS  183 (275)
                      ....++.++|++|+|+|..++.+....  .+.+.   ..  +.|++||.||+|+....  ..++..++.++.+..++.+|
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  147 (165)
T d1z06a1          68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS  147 (165)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred             cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEe
Confidence            344578999999999999876433321  12221   11  57999999999986542  12233344556678899999


Q ss_pred             CccccchhhHHHHHH
Q 023932          184 GQLGMGTMKLSRLAK  198 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~  198 (275)
                      |+++.+.+.+.+...
T Consensus       148 Akt~~~~~~V~e~F~  162 (165)
T d1z06a1         148 AKNPNDNDHVEAIFM  162 (165)
T ss_dssp             SSSGGGGSCHHHHHH
T ss_pred             cccCCcCcCHHHHHH
Confidence            998765444444433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-07  Score=76.50  Aligned_cols=87  Identities=11%  Similarity=-0.007  Sum_probs=59.8

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~----~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ...++.+|++|+|+|..++.+.... .+.    +..  .+.|++||.||+|+....  ..++...+..+.+..++.+||+
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  151 (173)
T d2fn4a1          72 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK  151 (173)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             chhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCC
Confidence            4567899999999999875333211 111    111  156999999999986432  1233444555667889999999


Q ss_pred             cccchhhHHHHHHHHh
Q 023932          186 LGMGTMKLSRLAKALA  201 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~l~  201 (275)
                      +|.|++++.+.+.+..
T Consensus       152 ~g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         152 LRLNVDEAFEQLVRAV  167 (173)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999877766543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.43  E-value=9.8e-08  Score=75.61  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=65.3

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMI  160 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~  160 (275)
                      ..+..||        +||+ ..........+..+|.+++|+|+.+.....+  ..+...+.     +.|+++|+||+|+.
T Consensus        46 ~~~~~~D--------~~G~-~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  116 (165)
T d1ksha_          46 FKLNIWD--------VGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP  116 (165)
T ss_dssp             EEEEEEE--------ECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             cceeeee--------cCcc-hhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccc
Confidence            4566676        4554 3333344456788999999999876433221  22333332     67999999999996


Q ss_pred             CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHH
Q 023932          161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ......+....+.     .....++.+||++|.|++++.++|.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_         117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5433223222221     11246889999999999998887654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.40  E-value=1.5e-07  Score=75.36  Aligned_cols=96  Identities=11%  Similarity=0.028  Sum_probs=60.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHH---
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF---  172 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~---  172 (275)
                      +||. ..........+..+|.+++|+|+....+..+  ..+...+.     +.|+++|.||+|+.......+....+   
T Consensus        63 ~~g~-~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~  141 (173)
T d1e0sa_          63 VGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLT  141 (173)
T ss_dssp             ESCC-GGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred             CCCc-chhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHH
Confidence            4554 2223334457899999999999875432221  12333332     57999999999996532222222222   


Q ss_pred             --HHcCCeeEEecCccccchhhHHHHHHH
Q 023932          173 --AKQGTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       173 --~~~g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                        ...+..++.+||++|+|++++.++|.+
T Consensus       142 ~~~~~~~~~~e~SA~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         142 RIRDRNWYVQPSCATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             GCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence              112346788999999999999888764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2e-07  Score=73.71  Aligned_cols=89  Identities=15%  Similarity=0.061  Sum_probs=61.7

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L-~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      .....+..+|.+++|+|..++.+...  ..+...   . .+.|+++|.||+|+....  ..++...+.++.+..++.+||
T Consensus        65 ~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SA  144 (164)
T d1yzqa1          65 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA  144 (164)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             chHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecC
Confidence            34457899999999999977643322  111111   1 157899999999986432  223444455566778999999


Q ss_pred             ccccchhhHHHHHHHHh
Q 023932          185 QLGMGTMKLSRLAKALA  201 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~  201 (275)
                      ++|.|++++.+.|.+.+
T Consensus       145 k~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         145 KAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             TTCTTHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHhh
Confidence            99999999988776543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.4e-07  Score=75.43  Aligned_cols=102  Identities=11%  Similarity=0.047  Sum_probs=65.9

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---hc-CCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LG-NRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L~-~kp~IlVlNK~Dl~~  161 (275)
                      ..+..||.        ||+ .+........+..+|++|+|+|..++.+....  .+...   .. +.|+++|.||+|+..
T Consensus        54 ~~~~i~D~--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~  124 (174)
T d2bmea1          54 VKLQIWDT--------AGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA  124 (174)
T ss_dssp             EEEEEEEE--------CCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred             eeEEEEEC--------CCc-hhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc
Confidence            45677874        443 23333444567999999999999865322221  11111   11 679999999999864


Q ss_pred             HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ..+  ......+..+.+..++.+||++|.|++++.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         125 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            322  1222334445677899999999999999876553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=8.1e-07  Score=73.75  Aligned_cols=85  Identities=19%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             hHHhhcccccCccEE--EEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eE
Q 023932           77 YEEECDWADLDADLY--YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RI  151 (275)
Q Consensus        77 ~~~~~~~~~~~~d~~--~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~I  151 (275)
                      .+|++.--.++..+.  .|.+....+=+.||| ..+.+.+...+..+|++|+|+|+..+......+...++.  +.| ++
T Consensus        46 ~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh-~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~ii  124 (204)
T d2c78a3          46 PEERARGITINTAHVEYETAKRHYSHVDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV  124 (204)
T ss_dssp             HHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEE
T ss_pred             hHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCc-hhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence            344444344444443  444444445577999 567788888999999999999999988776666555543  666 56


Q ss_pred             EEEEcccCcCH
Q 023932          152 LVLNREDMISM  162 (275)
Q Consensus       152 lVlNK~Dl~~~  162 (275)
                      +++||+|+++.
T Consensus       125 v~iNK~D~~~~  135 (204)
T d2c78a3         125 VFMNKVDMVDD  135 (204)
T ss_dssp             EEEECGGGCCC
T ss_pred             EEEEecccCCC
Confidence            67999999763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.7e-07  Score=74.81  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..++++|++++|+|..++.+... ..+...+    . ..|+++|.||+|+.....  .++...+....+..++++||++|
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg  152 (171)
T d2ew1a1          73 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKES  152 (171)
T ss_dssp             GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             HHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCC
Confidence            46789999999999876533221 1111111    1 568999999999865421  23333444456778999999999


Q ss_pred             cchhhHHH-HHHHHh
Q 023932          188 MGTMKLSR-LAKALA  201 (275)
Q Consensus       188 ~Gi~~L~~-~i~~l~  201 (275)
                      .|++++.. .+.++.
T Consensus       153 ~gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         153 DNVEKLFLDLACRLI  167 (171)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            99999854 444443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2e-07  Score=74.53  Aligned_cols=85  Identities=15%  Similarity=0.024  Sum_probs=58.5

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l---~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ...++.+|++++|+|..++.+..+.  .+   .+...  +.|+++|.||+|+.....  .++..++..+.+..++.+||+
T Consensus        70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak  149 (169)
T d1x1ra1          70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK  149 (169)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCS
T ss_pred             hhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCC
Confidence            4467899999999999875433221  11   22211  578999999999865422  234445556677889999999


Q ss_pred             ccc-chhhHHHHHHH
Q 023932          186 LGM-GTMKLSRLAKA  199 (275)
Q Consensus       186 ~g~-Gi~~L~~~i~~  199 (275)
                      ++. |++++...|.+
T Consensus       150 ~~~~nV~~~F~~l~~  164 (169)
T d1x1ra1         150 DPPLNVDKTFHDLVR  164 (169)
T ss_dssp             SSCBSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            875 99988765543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.6e-07  Score=75.24  Aligned_cols=84  Identities=8%  Similarity=-0.022  Sum_probs=53.1

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..++.+|++|+|+|+.++.+.... .+...+     .+.|+++|.||.|+....  ..++......+.+..++.+||++|
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g  153 (173)
T d2fu5c1          74 AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN  153 (173)
T ss_dssp             TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---
T ss_pred             HhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            457899999999999876433221 111111     167999999999987532  122333445556788999999999


Q ss_pred             cchhhHHHHHHH
Q 023932          188 MGTMKLSRLAKA  199 (275)
Q Consensus       188 ~Gi~~L~~~i~~  199 (275)
                      .|++++.+.|.+
T Consensus       154 ~gv~e~f~~l~~  165 (173)
T d2fu5c1         154 INVENAFFTLAR  165 (173)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998876554

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2.3e-07  Score=73.85  Aligned_cols=83  Identities=10%  Similarity=0.031  Sum_probs=57.4

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG  184 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa  184 (275)
                      ...+..+|.+|+|+|..++.+...  +..+.        .+.|+++|.||+|+....  ..++..++..+.+..++.+||
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          71 PMYYRGSAAAIIVYDITKEETFST--LKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHhhccceEEEeeechhhhhhh--HHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence            346789999999999876533322  22221        167899999999996432  122333444556788999999


Q ss_pred             ccccchhhHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKA  199 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~  199 (275)
                      ++|.|++++...|.+
T Consensus       149 k~~~nV~e~f~~l~~  163 (167)
T d1z0ja1         149 KNAININELFIEISR  163 (167)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998776544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.4e-07  Score=72.68  Aligned_cols=87  Identities=10%  Similarity=-0.052  Sum_probs=58.7

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH----hc--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEec
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW----LG--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~----L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iS  183 (275)
                      ......+..++++++|+|..++.+.... .+...    ..  +.|+++|.||+|+..... .++..++.++.+..++.+|
T Consensus        66 ~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~S  145 (166)
T d1ctqa_          66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETS  145 (166)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             cchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEc
Confidence            3344578999999999999765332211 11111    11  579999999999865321 2233334455677899999


Q ss_pred             CccccchhhHHHHHH
Q 023932          184 GQLGMGTMKLSRLAK  198 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~  198 (275)
                      |++|.|++++...|.
T Consensus       146 ak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         146 AKTRQGVEDAFYTLV  160 (166)
T ss_dssp             TTTCTTHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHH
Confidence            999999999876654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.9e-07  Score=73.13  Aligned_cols=83  Identities=14%  Similarity=-0.058  Sum_probs=56.8

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------h--cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEe
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------L--GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFS  182 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-------L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~i  182 (275)
                      ....++++|++++|+|..++.+..+  +..|       .  .+.|++||.||+|+....  ..++...+.++.+..++.+
T Consensus        68 ~~~~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  145 (167)
T d1kaoa_          68 RDLYIKNGQGFILVYSLVNQQSFQD--IKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMET  145 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEE
T ss_pred             hHHHhhcccceeeeeeecchhhhhh--hhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEE
Confidence            4456789999999999876533322  2222       1  157899999999986432  1223333444557789999


Q ss_pred             cCccccchhhHHHHHH
Q 023932          183 NGQLGMGTMKLSRLAK  198 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~  198 (275)
                      ||++|.|++++.+.|.
T Consensus       146 Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         146 SAKSKTMVDELFAEIV  161 (167)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHH
Confidence            9999999998876654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=6.8e-07  Score=70.88  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHhc-----CCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWLG-----NRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L~-----~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+|+.        ||+ ..........++.+|++|+|+|..+..+.... .+...+.     ..|+++|.||+|+..
T Consensus        53 ~~l~i~D~--------~g~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~  123 (166)
T d1z0fa1          53 IKLQIWDT--------AGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA  123 (166)
T ss_dssp             EEEEEEEC--------TTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred             EEEEEecc--------CCc-hhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh
Confidence            35667763        343 22223334567899999999998765332211 1111111     568999999999854


Q ss_pred             HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ...  .++...+.++.+..++.+||++|.|++++.+.|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         124 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            321  2334445556678899999999999999866543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.8e-07  Score=72.47  Aligned_cols=81  Identities=15%  Similarity=0.056  Sum_probs=55.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-c-----CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQW---L-G-----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~---L-~-----~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak  185 (275)
                      .++.+|++|+|+|..+..+..+  +..|   + .     +.|+++|.||+|+....+  .++..++....+..++.+||+
T Consensus        74 ~~~~~~~~ilvfd~t~~~s~~~--~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak  151 (172)
T d2g3ya1          74 CMQVGDAYLIVYSITDRASFEK--ASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAA  151 (172)
T ss_dssp             CCCCCSEEEEEEETTCHHHHHH--HHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             cccccceeeeeecccccchhhh--hhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence            4688999999999876533221  2222   1 1     579999999999865321  122233344567889999999


Q ss_pred             cccchhhHHHHHHH
Q 023932          186 LGMGTMKLSRLAKA  199 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~  199 (275)
                      +|.|++++.+.|.+
T Consensus       152 ~g~~i~~~f~~l~~  165 (172)
T d2g3ya1         152 VQHNVKELFEGIVR  165 (172)
T ss_dssp             TTBSHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999998766543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.28  E-value=2.4e-07  Score=72.41  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=29.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      +.+||+|||.||||||||||++.+.+...+.+..|.+
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~   40 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN   40 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceeccccee
Confidence            3579999999999999999999988766655544443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.5e-07  Score=72.62  Aligned_cols=82  Identities=12%  Similarity=-0.053  Sum_probs=56.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      .+..+|.+|+|+|..++.+....     .+.+...  +.|+++|.||+|+.....  .++..++..+.+..++.+||++|
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~  151 (167)
T d1xtqa1          72 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN  151 (167)
T ss_dssp             GTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCH
T ss_pred             hhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCC
Confidence            46889999999999876443221     1122222  579999999999864321  23333444556778899999999


Q ss_pred             cchhhHHHHHH
Q 023932          188 MGTMKLSRLAK  198 (275)
Q Consensus       188 ~Gi~~L~~~i~  198 (275)
                      .|++++.+.|.
T Consensus       152 ~~v~~~f~~li  162 (167)
T d1xtqa1         152 QTAVDVFRRII  162 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99999866543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.2e-07  Score=72.89  Aligned_cols=82  Identities=16%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ..+..+|++|+|+|..++.+...  +..++        ...++++|.||+|+.....  .++..++.++.+..++.+||+
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~--~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak  148 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQK--VKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK  148 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred             hhccCCceeEEEEeCCchhHHHh--hhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecC
Confidence            35688999999999887543322  22221        1568889999999865321  233444455667889999999


Q ss_pred             cccchhhHHHHHHH
Q 023932          186 LGMGTMKLSRLAKA  199 (275)
Q Consensus       186 ~g~Gi~~L~~~i~~  199 (275)
                      +|.|++++.+.|.+
T Consensus       149 ~~~~v~e~F~~l~~  162 (167)
T d1z08a1         149 QNKGIEELFLDLCK  162 (167)
T ss_dssp             TTBSHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999998765543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.6e-07  Score=72.83  Aligned_cols=84  Identities=12%  Similarity=0.004  Sum_probs=56.4

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-HH-HHH---hc-CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-LM-DQW---LG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~l-~~~---L~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..++++|.+++|+|..+..+.... .+ ..+   .. +.|+++|.||+|+.....  .+.........+..++.+||++|
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g  153 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTS  153 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCC
Confidence            467999999999998765332211 11 111   11 578999999999864421  22333334455678999999999


Q ss_pred             cchhhHHHHHHH
Q 023932          188 MGTMKLSRLAKA  199 (275)
Q Consensus       188 ~Gi~~L~~~i~~  199 (275)
                      .|++++.+.|.+
T Consensus       154 ~~V~e~f~~l~~  165 (170)
T d1r2qa_         154 MNVNEIFMAIAK  165 (170)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998776644

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.26  E-value=3.6e-07  Score=72.48  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      +..||++||.+|||||||||+|.+.....+.+..+.|+..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~   51 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE   51 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE
Confidence            4679999999999999999999988776666666666543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5e-07  Score=72.45  Aligned_cols=84  Identities=15%  Similarity=0.061  Sum_probs=55.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~  175 (275)
                      .+++++|++|+|+|..++.+..+  ..+...+    .+.|++||.||+|+......              ++...+.++.
T Consensus        69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~  148 (177)
T d1kmqa_          69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI  148 (177)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence            45789999999999977543221  1111222    26899999999999753211              1222233334


Q ss_pred             C-CeeEEecCccccchhhHHHHHHH
Q 023932          176 G-TKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       176 g-~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      + ..++.+||++|.|++++.+.+.+
T Consensus       149 ~~~~~~E~SAkt~~gi~e~F~~i~~  173 (177)
T d1kmqa_         149 GAFGYMECSAKTKDGVREVFEMATR  173 (177)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCcCHHHHHHHHHH
Confidence            4 47889999999999998776554

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=9.8e-07  Score=70.26  Aligned_cols=87  Identities=8%  Similarity=-0.073  Sum_probs=55.5

Q ss_pred             HHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHhc-----CCCeEEEEEcccCcCHHH---HHHHHHHHHHcC-Ce
Q 023932          113 ELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWLG-----NRKRILVLNREDMISMAD---RNAWATYFAKQG-TK  178 (275)
Q Consensus       113 ~l~~~l~~aDlVI~VvDar~p~s~~d~--~l---~~~L~-----~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g-~~  178 (275)
                      .....++.+|.+++|+|..++.+....  .+   ..+..     +.|+++|.||+|+.....   .+...++..+.+ ..
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  147 (175)
T d1ky3a_          68 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP  147 (175)
T ss_dssp             ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred             HHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCe
Confidence            334457899999999999775432211  11   11111     569999999999865321   122223334444 57


Q ss_pred             eEEecCccccchhhHHHHHHH
Q 023932          179 VIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       179 vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      ++.+||++|.|++++.+.|.+
T Consensus       148 ~~e~SA~~g~gv~e~f~~l~~  168 (175)
T d1ky3a_         148 LFLTSAKNAINVDTAFEEIAR  168 (175)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHH
T ss_pred             EEEEeCCCCcCHHHHHHHHHH
Confidence            899999999999998766543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.2e-06  Score=70.10  Aligned_cols=84  Identities=12%  Similarity=0.032  Sum_probs=56.5

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hc-CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LG-NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL  186 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L~-~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~  186 (275)
                      ...++.+|++|+|+|..++.+...  ..+..+   .. +.|+++|.||+|+.+..  ............+..++.+||++
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALD  150 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCC
Confidence            345789999999999987633221  112111   11 56899999999997542  22233344445667899999999


Q ss_pred             ccchhhHHHHHH
Q 023932          187 GMGTMKLSRLAK  198 (275)
Q Consensus       187 g~Gi~~L~~~i~  198 (275)
                      |.|++++.+.+.
T Consensus       151 g~~i~e~f~~l~  162 (175)
T d2f9la1         151 STNVEEAFKNIL  162 (175)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             CcCHHHHHHHHH
Confidence            999998865443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.6e-06  Score=68.85  Aligned_cols=84  Identities=15%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQ  185 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak  185 (275)
                      ...+..+|.+++|+|..++.+..... +..+.      .+.|+++|.||+|+....  ..++..++.++.+..++.+||+
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Sak  146 (168)
T d2atva1          67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC  146 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTT
T ss_pred             hhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccc
Confidence            34678899999999998764433221 11111      268999999999986432  1233334445667889999999


Q ss_pred             cccc-hhhHHHHHH
Q 023932          186 LGMG-TMKLSRLAK  198 (275)
Q Consensus       186 ~g~G-i~~L~~~i~  198 (275)
                      +|.| ++++...+.
T Consensus       147 tg~gnV~e~F~~l~  160 (168)
T d2atva1         147 TGEGNITEIFYELC  160 (168)
T ss_dssp             TCTTCHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHH
Confidence            9986 888765443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.18  E-value=4.8e-07  Score=72.11  Aligned_cols=41  Identities=24%  Similarity=0.428  Sum_probs=34.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ++.+||+++|.+|||||||+|+|.+.+...+.+..|++...
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~   54 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS   54 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEE
Confidence            45789999999999999999999988777777777766543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.18  E-value=1.8e-06  Score=68.33  Aligned_cols=87  Identities=10%  Similarity=0.038  Sum_probs=57.8

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEE
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIF  181 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~  181 (275)
                      ....+..++.+++++|..+..+.....  .....     .+.|+++|+||+|+.......+....+..     .+..++.
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  155 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA  155 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEE
Confidence            344678899999999987654332211  11111     26799999999998654333333333321     2246899


Q ss_pred             ecCccccchhhHHHHHHHH
Q 023932          182 SNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i~~l  200 (275)
                      +||++|+|++++.++|.+.
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~  174 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSR  174 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHH
Confidence            9999999999998887654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.15  E-value=7.1e-07  Score=70.85  Aligned_cols=40  Identities=20%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      +..||+++|.||||||||||+|.+.+...+++..+++...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~   53 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE   53 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEE
Confidence            3579999999999999999999998877777777665443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.1e-06  Score=66.99  Aligned_cols=85  Identities=12%  Similarity=-0.058  Sum_probs=56.6

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h--cCCCeEEEEEcccCcCHHH--HHHHHHHHHH-cCCeeEEecC
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAK-QGTKVIFSNG  184 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~-~g~~vi~iSa  184 (275)
                      ..+++.+|++|+|+|..++.+..+.  .+...   .  .+.|+++|.||+|+.....  .++.....++ .+..++.+||
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (167)
T d1c1ya_          69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcC
Confidence            3478999999999999876433321  11111   1  1568999999999865421  1222333334 3567899999


Q ss_pred             ccccchhhHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKA  199 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~  199 (275)
                      ++|.|++++.+.|.+
T Consensus       149 k~g~gv~e~F~~l~~  163 (167)
T d1c1ya_         149 KSKINVNEIFYDLVR  163 (167)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999998776543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.1e-06  Score=69.96  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=62.7

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH---hc-CCCeEEEEEcccCcC
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---LG-NRKRILVLNREDMIS  161 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~---L~-~kp~IlVlNK~Dl~~  161 (275)
                      ..+.+||+        ||+ ..........+.++|++++|+|..++.+.....  +...   .. ..++++|.||+|+..
T Consensus        56 ~~l~i~Dt--------~G~-e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~  126 (170)
T d2g6ba1          56 VKLQMWDT--------AGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH  126 (170)
T ss_dssp             EEEEEEEC--------CCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred             EEEEEEEC--------CCc-hhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh
Confidence            35667773        443 222232334578999999999987654322211  1111   11 568999999999875


Q ss_pred             HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932          162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                      ...  .++.....++.+..++.+||++|.|++++.+.|.
T Consensus       127 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1         127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            421  2233344455678899999999999999877654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-06  Score=68.22  Aligned_cols=83  Identities=12%  Similarity=0.049  Sum_probs=55.2

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH-H-HHHH---h-cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---L-GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~-~-l~~~---L-~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..+..+|++|+|+|..++.+.... . +...   . .+.|++||.||+|+....  ..++...+..+.+..++.+||++|
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg  150 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA  150 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCC
Confidence            456889999999998775433221 1 1111   1 167899999999975431  122233334455778999999999


Q ss_pred             cchhhHHHHHH
Q 023932          188 MGTMKLSRLAK  198 (275)
Q Consensus       188 ~Gi~~L~~~i~  198 (275)
                      .|++++...+.
T Consensus       151 ~~V~e~f~~i~  161 (173)
T d2a5ja1         151 CNVEEAFINTA  161 (173)
T ss_dssp             TTHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99998866543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2e-06  Score=68.81  Aligned_cols=84  Identities=17%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHH-HHHHHHHHHHHcCCeeEEecCccc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ..+..+|++|+|+|..++.+...  ..+.++..     ..+++++.||.|..... ...+..++.++.+..++.+||++|
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg  154 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTC  154 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46789999999999876433221  11222221     46788999999986432 223444556667788999999999


Q ss_pred             cchhhHHHHHHH
Q 023932          188 MGTMKLSRLAKA  199 (275)
Q Consensus       188 ~Gi~~L~~~i~~  199 (275)
                      .|++++.+.+.+
T Consensus       155 ~gv~e~f~~l~~  166 (177)
T d1x3sa1         155 DGVQCAFEELVE  166 (177)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999998775543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.09  E-value=9.6e-07  Score=68.42  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      +||+++|.||||||||||+|.+.+..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~   26 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIV   26 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            58999999999999999999976543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.7e-06  Score=68.67  Aligned_cols=81  Identities=12%  Similarity=-0.026  Sum_probs=53.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHcC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAKQG  176 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d--~~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~g  176 (275)
                      .+.++|++++|+|..++.+..+  ..+...    ..+.|+++|.||+|+.+...              .++..++.++.+
T Consensus        77 ~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~  156 (185)
T d2atxa1          77 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG  156 (185)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred             cccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC
Confidence            5688999999999987543221  111222    22679999999999865321              122223333444


Q ss_pred             -CeeEEecCccccchhhHHHHH
Q 023932          177 -TKVIFSNGQLGMGTMKLSRLA  197 (275)
Q Consensus       177 -~~vi~iSak~g~Gi~~L~~~i  197 (275)
                       ..++.+||++|.|++++.+.+
T Consensus       157 ~~~~~E~SAk~~~gv~e~F~~l  178 (185)
T d2atxa1         157 ACCYVECSALTQKGLKTVFDEA  178 (185)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHH
T ss_pred             CCEEEEecCCCCcCHHHHHHHH
Confidence             578899999999999886654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=2.1e-06  Score=73.04  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             cchhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcH---H
Q 023932           73 SIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHP---L  140 (275)
Q Consensus        73 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~---~  140 (275)
                      .+....|++..-.++..+..+.....  .+-+.||| ..+.+.+..-+..+|.+|+|||+..+.       ...-.   .
T Consensus        59 ~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDtPGH-~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~  137 (239)
T d1f60a3          59 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL  137 (239)
T ss_dssp             HHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH
T ss_pred             cccchhhhcceeccccceeEeccCCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH
Confidence            46667777777777765554443333  45577999 678888888899999999999997641       11111   1


Q ss_pred             HHHHhcCCC-eEEEEEcccCcCHHH--H----HHHHHHHHHcC-----CeeEEecCccccchhh
Q 023932          141 MDQWLGNRK-RILVLNREDMISMAD--R----NAWATYFAKQG-----TKVIFSNGQLGMGTMK  192 (275)
Q Consensus       141 l~~~L~~kp-~IlVlNK~Dl~~~~~--~----~~~~~~~~~~g-----~~vi~iSak~g~Gi~~  192 (275)
                      +...+ +.+ +|+++||+|+.+...  .    ++...++.+.+     +.++++|+..|.|+-+
T Consensus       138 ~~~~~-gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         138 LAFTL-GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHT-TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHc-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            12222 555 677899999975321  1    22333333333     3578999999988643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.07  E-value=1.5e-06  Score=68.46  Aligned_cols=34  Identities=21%  Similarity=0.446  Sum_probs=27.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG  250 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG  250 (275)
                      .+||+|+|.+|||||||||+|.+.....+++.-|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~   35 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG   35 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEe
Confidence            4789999999999999999999876544444333

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.06  E-value=2e-06  Score=73.35  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=54.4

Q ss_pred             EEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcHHHHHHh--cCC-CeEEEEEcccCcC
Q 023932           92 YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL--GNR-KRILVLNREDMIS  161 (275)
Q Consensus        92 ~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~~l~~~L--~~k-p~IlVlNK~Dl~~  161 (275)
                      .|......+-+-||| ..+...+...+..+|.+++|||+..+.       ...-.+....+  .+. ++++++||+|+..
T Consensus        98 ~~~~~~i~~iDtPGH-~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3          98 ETEHRRFSLLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPS  176 (245)
T ss_dssp             ECSSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred             ccccceeeeeccccc-ccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCc
Confidence            333333345677999 667778888889999999999998752       11111222221  244 5778999999863


Q ss_pred             H----HHHHH----HHHHHHHc-C------CeeEEecCccccchhhH
Q 023932          162 M----ADRNA----WATYFAKQ-G------TKVIFSNGQLGMGTMKL  193 (275)
Q Consensus       162 ~----~~~~~----~~~~~~~~-g------~~vi~iSak~g~Gi~~L  193 (275)
                      .    ...++    ...++.+. +      ..++++||++|.|+.++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence            1    11222    22222222 2      35899999999998755

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.06  E-value=1e-06  Score=76.29  Aligned_cols=25  Identities=56%  Similarity=0.869  Sum_probs=23.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .++++|||.||||||||+|+|++.+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC
Confidence            5789999999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.2e-06  Score=69.28  Aligned_cols=87  Identities=15%  Similarity=-0.010  Sum_probs=59.3

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh---c--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCccc
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL---G--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLG  187 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L---~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g  187 (275)
                      ...++++|.+++|+|..++.+..+.. +....   .  ..+++++.||.|+.+... .++..++..+.+..++++||++|
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKND  148 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCC
Confidence            34679999999999998764332221 11111   1  568899999999865422 22333344456788999999999


Q ss_pred             cchhhHHHHHHHHh
Q 023932          188 MGTMKLSRLAKALA  201 (275)
Q Consensus       188 ~Gi~~L~~~i~~l~  201 (275)
                      .|++++.+.|.++.
T Consensus       149 ~~v~e~f~~l~~~i  162 (166)
T d1g16a_         149 DNVNEIFFTLAKLI  162 (166)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999987766544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.1e-06  Score=66.67  Aligned_cols=84  Identities=7%  Similarity=-0.054  Sum_probs=55.6

Q ss_pred             HHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc-----CCCeEEEEEcccCcCHH-HHHHHHHHHHHcC-CeeEE
Q 023932          114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMA-DRNAWATYFAKQG-TKVIF  181 (275)
Q Consensus       114 l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~-----~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g-~~vi~  181 (275)
                      ....+..+|++++++|...+.+....     ++.++..     +.|+++|.||+|+.... ..++..++.++.+ ..++.
T Consensus        72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred             hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEE
Confidence            33467899999999998765432211     1222221     46899999999986532 1223334444444 67899


Q ss_pred             ecCccccchhhHHHHH
Q 023932          182 SNGQLGMGTMKLSRLA  197 (275)
Q Consensus       182 iSak~g~Gi~~L~~~i  197 (275)
                      +||++|.|++++.+.+
T Consensus       152 ~Sak~~~gI~e~f~~l  167 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEA  167 (174)
T ss_dssp             CCTTTCTTHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHH
Confidence            9999999999986554

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=2.3e-06  Score=67.87  Aligned_cols=84  Identities=14%  Similarity=0.061  Sum_probs=57.3

Q ss_pred             HHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh----cCCCeEEEEEcccCcCHH-----HHHHHHHHHHHcCCeeEEec
Q 023932          115 KDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMA-----DRNAWATYFAKQGTKVIFSN  183 (275)
Q Consensus       115 ~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L----~~kp~IlVlNK~Dl~~~~-----~~~~~~~~~~~~g~~vi~iS  183 (275)
                      ...+..+|++++|+|..++.+..+..  +....    ...+.++|.||+|+....     ..++..++.++.+..++.+|
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~S  149 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETS  149 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEec
Confidence            34789999999999998754433221  11111    157899999999985421     11233444555678899999


Q ss_pred             CccccchhhHHHHHH
Q 023932          184 GQLGMGTMKLSRLAK  198 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~  198 (275)
                      |++|.|++++...|.
T Consensus       150 ak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         150 AKTGENVNDVFLGIG  164 (170)
T ss_dssp             TTTCTTHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHH
Confidence            999999998876643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=2.2e-06  Score=68.91  Aligned_cols=83  Identities=8%  Similarity=-0.025  Sum_probs=54.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--H---HHHHhc-----CCCeEEEEEcccCcCHHHH-HHHHHHHHH-cCCeeEEecC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--L---MDQWLG-----NRKRILVLNREDMISMADR-NAWATYFAK-QGTKVIFSNG  184 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~---l~~~L~-----~kp~IlVlNK~Dl~~~~~~-~~~~~~~~~-~g~~vi~iSa  184 (275)
                      .+..+|++++++|..+..+....  .   +.....     +.|+++|.||+|+...... +....+..+ .+..++++||
T Consensus        71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (184)
T d1vg8a_          71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA  150 (184)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred             cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcC
Confidence            46889999999999764322211  1   111111     4699999999998654321 222233333 3578999999


Q ss_pred             ccccchhhHHHHHHH
Q 023932          185 QLGMGTMKLSRLAKA  199 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~  199 (275)
                      ++|.|++++.+.+.+
T Consensus       151 k~~~gI~e~f~~l~~  165 (184)
T d1vg8a_         151 KEAINVEQAFQTIAR  165 (184)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999998876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.00  E-value=4.4e-06  Score=69.95  Aligned_cols=101  Identities=16%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CC---cHHHHHHhcCCCeEEEEEcccC
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TT---HPLMDQWLGNRKRILVLNREDM  159 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~---d~~l~~~L~~kp~IlVlNK~Dl  159 (275)
                      .+.|+.....+=+.||| ..+...+...+.-+|.+|+|||+..+..       ..   ...+...+...++|+++||+|+
T Consensus        75 ~~~~~~~~i~iiDtPGH-~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~  153 (224)
T d1jnya3          75 RFETKKYFFTIIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL  153 (224)
T ss_dssp             EEECSSCEEEECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred             EEecCCceeEEeeCCCc-HHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccC
Confidence            34444444456688999 7788888888999999999999987631       11   1223333445578889999998


Q ss_pred             cCH----HHHH----HHHHHHHHcC-----CeeEEecCccccchh
Q 023932          160 ISM----ADRN----AWATYFAKQG-----TKVIFSNGQLGMGTM  191 (275)
Q Consensus       160 ~~~----~~~~----~~~~~~~~~g-----~~vi~iSak~g~Gi~  191 (275)
                      ...    ...+    ....++...+     ..++++||..|.|+.
T Consensus       154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            742    1111    1222233333     467899999998874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.6e-06  Score=67.63  Aligned_cols=82  Identities=17%  Similarity=-0.005  Sum_probs=53.6

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHcC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR--------------NAWATYFAKQG  176 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~g  176 (275)
                      .+..+|++++|+|..+..+..+.  .+...    ..+.|++||.||+|+......              .....+.++.+
T Consensus        73 ~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  152 (183)
T d1mh1a_          73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG  152 (183)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             cccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC
Confidence            56889999999999765332211  11221    226799999999998643211              11222233334


Q ss_pred             -CeeEEecCccccchhhHHHHHH
Q 023932          177 -TKVIFSNGQLGMGTMKLSRLAK  198 (275)
Q Consensus       177 -~~vi~iSak~g~Gi~~L~~~i~  198 (275)
                       ..++.+||++|.|++++.+.+.
T Consensus       153 ~~~~~E~SAk~~~~V~e~F~~l~  175 (183)
T d1mh1a_         153 AVKYLECSALTQRGLKTVFDEAI  175 (183)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CceEEEcCCCCCcCHHHHHHHHH
Confidence             5789999999999999866543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.99  E-value=6.2e-06  Score=63.62  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=58.1

Q ss_pred             HHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHH-----HHcCCee
Q 023932          112 KELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF-----AKQGTKV  179 (275)
Q Consensus       112 k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~-----~~~g~~v  179 (275)
                      ......+..++.+++++|..+......  ..+.+.+.     ..|++++.||.|+.......+.....     ...+..+
T Consensus        59 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~  138 (160)
T d1r8sa_          59 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI  138 (160)
T ss_dssp             HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred             hhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEE
Confidence            344567799999999999876533222  12222222     57899999999987543333322221     1224578


Q ss_pred             EEecCccccchhhHHHHHHH
Q 023932          180 IFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       180 i~iSak~g~Gi~~L~~~i~~  199 (275)
                      +++||++|.|++++.++|.+
T Consensus       139 ~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         139 QATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             EECBTTTTBTHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHh
Confidence            89999999999999887653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.2e-06  Score=67.69  Aligned_cols=39  Identities=21%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY  257 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~  257 (275)
                      +|++++|.+|||||||||+|++.+ ...+..|.++.+...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~-~~~~~~~t~~~~~~~   41 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKI   41 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC-CCCccCCccceeEEE
Confidence            589999999999999999999754 444445555555543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2e-06  Score=69.72  Aligned_cols=84  Identities=12%  Similarity=-0.043  Sum_probs=54.3

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~  175 (275)
                      ..+..+|++++|+|..++.+..+.  .+...+    .+.|+++|.||+|+......              ++..++..+.
T Consensus        70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (191)
T d2ngra_          70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL  149 (191)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             hcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence            356889999999999876432221  111111    26799999999998643211              1112223333


Q ss_pred             -CCeeEEecCccccchhhHHHHHHH
Q 023932          176 -GTKVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       176 -g~~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                       +..++.+||++|.|++++.+.+..
T Consensus       150 ~~~~~~e~SAk~~~~V~e~f~~l~~  174 (191)
T d2ngra_         150 KAVKYVECSALTQKGLKNVFDEAIL  174 (191)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCcCHHHHHHHHHH
Confidence             367899999999999998765543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.97  E-value=3.1e-05  Score=66.73  Aligned_cols=70  Identities=13%  Similarity=0.040  Sum_probs=56.1

Q ss_pred             EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932           90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus        90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      .+.|++....+=+.||| ..+..++...+.-+|.+|+|+|+..+....-..+.+.+.  ++|+++++||+|..
T Consensus        61 ~~~~~~~~~n~iDtPGh-~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          61 PLLFRGHRVFLLDAPGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEETTEEEEEEECCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             cccccccceeEEccCch-hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence            45665555555678999 667888888999999999999999988776666666654  78999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=2.1e-06  Score=69.79  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|+|+|.||||||||||+|++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.93  E-value=1.2e-05  Score=66.45  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             ccEEEEeCCCccccccchhHHHHHHHH--HHHH--hhcCeEEEEEeCCCCCCCCcHHH---HHH----hcCCCeEEEEEc
Q 023932           88 ADLYYWTKSLRPVQWYPGHIAKTEKEL--KDQL--KLMDVVIEVRDARIPLSTTHPLM---DQW----LGNRKRILVLNR  156 (275)
Q Consensus        88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l--~~~l--~~aDlVI~VvDar~p~s~~d~~l---~~~----L~~kp~IlVlNK  156 (275)
                      .+|...+        .|||........  ...+  ...+.+++|+|+...........   ...    ....|.++|+||
T Consensus        95 ~~~~~id--------~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK  166 (244)
T d1yrba1          95 NDYVLID--------TPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK  166 (244)
T ss_dssp             CSEEEEE--------CCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             cceeeec--------cccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeec
Confidence            4566655        577765433211  1222  23668999999876544322111   111    116799999999


Q ss_pred             ccCcCHHHHHHHHHHH----------------------------HH--cCCeeEEecCccccchhhHHHHHHHH
Q 023932          157 EDMISMADRNAWATYF----------------------------AK--QGTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       157 ~Dl~~~~~~~~~~~~~----------------------------~~--~g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      +|+.+..+...+..+.                            .+  ....++++||++|+|+++|..+|.+.
T Consensus       167 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         167 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            9999865443322111                            01  12468999999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.5e-06  Score=66.93  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      -.|++++|.+|||||||||+|.+.. ......|+++.+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~-f~~~~~~~~~~~~~   43 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFM   43 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceEE
Confidence            3689999999999999999999754 45555566655543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=5.3e-06  Score=67.42  Aligned_cols=83  Identities=11%  Similarity=-0.061  Sum_probs=56.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHH-HHHHh----c-CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcccc
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPL-MDQWL----G-NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGM  188 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~-l~~~L----~-~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~  188 (275)
                      .++++|++|+|+|..++.+..... +...+    . +.|+++|.||+|+....  ..+.........+..++++||++|.
T Consensus        75 ~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~  154 (194)
T d2bcgy1          75 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST  154 (194)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCT
T ss_pred             HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCc
Confidence            568999999999987653322211 11111    1 67999999999987532  1223334444566789999999999


Q ss_pred             chhhHHHHHHH
Q 023932          189 GTMKLSRLAKA  199 (275)
Q Consensus       189 Gi~~L~~~i~~  199 (275)
                      |++++.+.+.+
T Consensus       155 gi~e~f~~l~~  165 (194)
T d2bcgy1         155 NVEDAFLTMAR  165 (194)
T ss_dssp             THHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99998766543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.90  E-value=7e-06  Score=71.41  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=29.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      .+++|||..++|||||||+|++...+.++..| +||-+..++
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~-~T~~~~~i~   65 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI-VTRRPLILQ   65 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEE
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc-cccCCEEEE
Confidence            47999999999999999999999877888776 777777665

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=1.8e-05  Score=68.41  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~  259 (275)
                      ..+++|+|.-++|||||||+|++...+.++..| +|+-+..+.
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~-~T~~~~~i~   67 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQ   67 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC-SCSSCEEEE
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc-cccCCEEEE
Confidence            347999999999999999999998877888877 888877665

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.81  E-value=5.9e-06  Score=66.10  Aligned_cols=38  Identities=24%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR  253 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr  253 (275)
                      +.+||+++|.+|||||||||+|.........+..|.+.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~   53 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV   53 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEE
Confidence            46899999999999999999998776666665555443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8e-06  Score=65.19  Aligned_cols=25  Identities=36%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|.+|||||||||+|.+..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC
Confidence            4799999999999999999999754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.77  E-value=6.5e-06  Score=65.40  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP  244 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~  244 (275)
                      +.+|++++|.||||||||||+|.......
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~   39 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT   39 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            46899999999999999999998765443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=9.6e-06  Score=63.78  Aligned_cols=25  Identities=44%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|.+|||||||||+|.+..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4789999999999999999999643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.4e-06  Score=63.99  Aligned_cols=38  Identities=21%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      ..||+++|.+|||||||||++++.+ ......|.++.+.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~   41 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEF   41 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC-CCSSCTTSCCCCE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccccc
Confidence            3689999999999999999999765 3333334444443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=1e-05  Score=64.89  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVL  255 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~  255 (275)
                      +||+++|.+|||||||||+|++.+- ....+..|.+...
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~   41 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT   41 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeee
Confidence            5899999999999999999997542 2223444554433

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1e-05  Score=64.82  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=24.2

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++.+|++++|.+|||||||||++++..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCC
Confidence            457899999999999999999999764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.74  E-value=5.6e-06  Score=69.35  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=24.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .|+|+|.||+|||||+|+|++.. .......++|++.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~-~~~~~~~~~~~~~   42 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA-VASREAGGITQHI   42 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-HSCC----CCCBT
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc-chheecCceeeec
Confidence            49999999999999999999754 2233444555543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.72  E-value=1.8e-05  Score=64.31  Aligned_cols=43  Identities=26%  Similarity=0.384  Sum_probs=32.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC--CccccCCCCcccccceEEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR--RMCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~--~~~~vs~~pGtTr~~~~v~  259 (275)
                      .++|+++|..|+|||||+|+|++.  ++.......|.|++.....
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~   49 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFAD   49 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhh
Confidence            468999999999999999999863  3444455678888876544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=2.7e-05  Score=63.39  Aligned_cols=59  Identities=19%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC---cHHHHHHhc-------CCCeEEEEEcccCcC
Q 023932          103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---HPLMDQWLG-------NRKRILVLNREDMIS  161 (275)
Q Consensus       103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~---d~~l~~~L~-------~kp~IlVlNK~Dl~~  161 (275)
                      +||+-.........++..+|.+++|+|+.+.....   ...+..++.       +.|++||+||+|+..
T Consensus        54 ~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          54 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             ccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            45654333345566789999999999987543211   112222221       468889999999964

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.3e-05  Score=63.62  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .|++++|.+|||||||||++++.+ ......|+++...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~-~~~~~~~~~~~~~   40 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEF   40 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCC-CCCCcccceeecc
Confidence            589999999999999999999765 3333334444333

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=1.8e-05  Score=62.57  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~  259 (275)
                      -.|++++|.+|||||||||+|.+.. .....+.+|++.....+.
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~   48 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIY   48 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEE
Confidence            3689999999999999999998654 223344555554444333

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.65  E-value=4.6e-05  Score=58.78  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=56.0

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHH--HHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEec
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN  183 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iS  183 (275)
                      .....++.+++++|...........  +...+.     ..++++|.||.|+.......+....+.     .....++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  147 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  147 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            3458899999999987543332211  111111     568899999999976533233322221     2235789999


Q ss_pred             CccccchhhHHHHHHHHh
Q 023932          184 GQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       184 ak~g~Gi~~L~~~i~~l~  201 (275)
                      |++|.|++++.+.|.+..
T Consensus       148 A~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         148 ATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999988776543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.2e-05  Score=62.43  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      -.|++++|.+|||||||||++++..
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3689999999999999999998754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=2.9e-05  Score=61.35  Aligned_cols=24  Identities=33%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +||+++|.+|||||||||++.+.+
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCC
Confidence            689999999999999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=2.8e-05  Score=59.59  Aligned_cols=83  Identities=10%  Similarity=0.090  Sum_probs=52.7

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHH--HHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH------------cCC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPL--MDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QGT  177 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~--l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~------------~g~  177 (275)
                      ....++.+++++|..+........  +....     .+.|++++.||.|+.......+..+.+..            .+.
T Consensus        64 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  143 (166)
T d2qtvb1          64 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPV  143 (166)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCE
T ss_pred             hhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCC
Confidence            457899999999987643322111  11111     15789999999998653222222222210            123


Q ss_pred             eeEEecCccccchhhHHHHHHH
Q 023932          178 KVIFSNGQLGMGTMKLSRLAKA  199 (275)
Q Consensus       178 ~vi~iSak~g~Gi~~L~~~i~~  199 (275)
                      .++++||++|+|++++.++|.+
T Consensus       144 ~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         144 EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHhC
Confidence            6889999999999999988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=3.1e-05  Score=61.94  Aligned_cols=83  Identities=16%  Similarity=0.062  Sum_probs=53.2

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHcC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------------RNAWATYFAKQG  176 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~g  176 (275)
                      .++.+|++|+|+|..++.+....  .+...+    .+.|+++|.||+|+.....              .++.....++.+
T Consensus        70 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~  149 (179)
T d1m7ba_          70 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG  149 (179)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred             hhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC
Confidence            56899999999999765432211  122222    2679999999999854211              122333333444


Q ss_pred             -CeeEEecCcccc-chhhHHHHHHH
Q 023932          177 -TKVIFSNGQLGM-GTMKLSRLAKA  199 (275)
Q Consensus       177 -~~vi~iSak~g~-Gi~~L~~~i~~  199 (275)
                       ..++.+||++|. |++++.+.+..
T Consensus       150 ~~~y~E~SAk~~~n~i~~~F~~~~~  174 (179)
T d1m7ba_         150 AATYIECSALQSENSVRDIFHVATL  174 (179)
T ss_dssp             CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCcCHHHHHHHHHH
Confidence             468889999997 58888765543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=5.4e-05  Score=61.18  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVL  255 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~  255 (275)
                      -.||+|+|.+|||||||||.|+... .....+..|++...
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~   45 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI   45 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE
Confidence            4689999999999999999999654 23344555565544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.55  E-value=4.7e-05  Score=59.70  Aligned_cols=85  Identities=12%  Similarity=0.047  Sum_probs=54.8

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHH--HHHH-----hcCCCeEEEEEcccCcCHHHHHHHHHHHHHc-------------
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQW-----LGNRKRILVLNREDMISMADRNAWATYFAKQ-------------  175 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~--l~~~-----L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-------------  175 (275)
                      ......+.+++++|..+........  +...     +.+.|.+++.||.|+..........+.+...             
T Consensus        76 ~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  155 (186)
T d1f6ba_          76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE  155 (186)
T ss_dssp             GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred             hhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHH
Confidence            3568899999999987643322211  1111     1268999999999986533222332222211             


Q ss_pred             ----CCeeEEecCccccchhhHHHHHHHH
Q 023932          176 ----GTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       176 ----g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                          ++.++++||++|+|++++.++|.+.
T Consensus       156 ~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         156 LNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence                1358899999999999998887643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3e-05  Score=60.68  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=25.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT  252 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT  252 (275)
                      ||+++|.+|||||||||++++.+ ..-...|.++
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~-~~~~~~~~~~   34 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIG   34 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC-CCCcccccee
Confidence            79999999999999999999765 3333334433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.2e-05  Score=59.74  Aligned_cols=27  Identities=30%  Similarity=0.441  Sum_probs=23.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRMC  243 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~  243 (275)
                      ..|++++|.+|||||||||++++.+..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~   32 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFL   32 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            468999999999999999999876533

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=3.2e-05  Score=66.95  Aligned_cols=100  Identities=15%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             cchhhHHhhcccccCcc--EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CC
Q 023932           73 SIEAYEEECDWADLDAD--LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR  148 (275)
Q Consensus        73 ~~~~~~~~~~~~~~~~d--~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~k  148 (275)
                      .+....|++....+...  .+.|++....+=+.||| ..+..++...+.-+|.+|+|||+.++....-..+.+...  +.
T Consensus        46 ~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~-~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~l  124 (276)
T d2bv3a2          46 MDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKV  124 (276)
T ss_dssp             ---------CCCCCCCSEEEEEETTEEEEEECCCSS-SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTC
T ss_pred             EeccHHHHhcCCccccceeeeccCCeEEEEecCCch-hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCC
Confidence            33444455555555444  55666666566678999 667777888899999999999999988776666666654  88


Q ss_pred             CeEEEEEcccCcCHHHHHHHHHHHHH
Q 023932          149 KRILVLNREDMISMADRNAWATYFAK  174 (275)
Q Consensus       149 p~IlVlNK~Dl~~~~~~~~~~~~~~~  174 (275)
                      |+++++||+|..... ..+.++.+++
T Consensus       125 P~i~fINKmDr~~ad-~~~~l~ei~~  149 (276)
T d2bv3a2         125 PRIAFANKMDKTGAD-LWLVIRTMQE  149 (276)
T ss_dssp             CEEEEEECTTSTTCC-HHHHHHHHHH
T ss_pred             CEEEEEecccccccc-cchhHHHHHH
Confidence            999999999986532 2334444443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.4e-05  Score=60.48  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      -.||+++|.+|||||||+|++.+...
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcC
Confidence            35899999999999999999987553

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=3.6e-05  Score=60.55  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|.+|||||||||+|.+.+
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC
Confidence            4789999999999999999999755

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=4.6e-05  Score=59.52  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||+++..+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3589999999999999999999654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.2e-05  Score=59.03  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=22.0

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||||+|++..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            589999999999999999999754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.1e-05  Score=59.54  Aligned_cols=25  Identities=36%  Similarity=0.559  Sum_probs=22.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      -.||+++|.+|||||||||++...+
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3589999999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5e-05  Score=59.99  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||+|...+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~   29 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKK   29 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3689999999999999999998654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=5.9e-05  Score=62.09  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=38.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC-----------CccccCCCC-----cccccceEEE------EEEeecccccccc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR-----------RMCPAAPRP-----GVTRVLKYVS------QFFLLKYHQKCKV  272 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~-----------~~~~vs~~p-----GtTr~~~~v~------~~~~~~~~~~~~~  272 (275)
                      .++|+++|.+|+|||||+|+|+..           ....+...|     |+|.+...+.      .+-+.++||.-++
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            478999999999999999999732           111122222     8999887654      2455677665443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.1e-05  Score=60.83  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||++++..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCC
Confidence            4689999999999999999999754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.42  E-value=8.2e-05  Score=58.17  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|.+|||||||+|+|.+.+
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCC
Confidence            4789999999999999999998755

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=5.7e-05  Score=59.40  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|++++|.+||||||||+++++..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4799999999999999999999765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5.6e-05  Score=59.53  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+||||||||++|+..+
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            489999999999999999999654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=4.1e-05  Score=61.19  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      -+||+++|.+|||||||||+|++..
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCC
Confidence            4789999999999999999999654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=7.8e-05  Score=65.92  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHh
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+..+|+|.|.||||||||||+|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            357899999999999999999997

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0001  Score=57.76  Aligned_cols=25  Identities=36%  Similarity=0.626  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||+|++..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCC
Confidence            4689999999999999999998654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00017  Score=57.47  Aligned_cols=82  Identities=12%  Similarity=-0.016  Sum_probs=51.5

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---c-----CCCeEEEEEcccCcCHHH----HHHHHHHHHH-cCCeeEEe
Q 023932          117 QLKLMDVVIEVRDARIPLSTTH-PLMDQWL---G-----NRKRILVLNREDMISMAD----RNAWATYFAK-QGTKVIFS  182 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d-~~l~~~L---~-----~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~-~g~~vi~i  182 (275)
                      +++.+|++|+|+|..+..+..+ ..+..++   .     +.|+++|.||.|+.....    .++...+..+ .+..++.+
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~  146 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYET  146 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEE
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEe
Confidence            5788999999999876533222 1122222   1     347899999988743211    1122233333 24678999


Q ss_pred             cCccccchhhHHHHHH
Q 023932          183 NGQLGMGTMKLSRLAK  198 (275)
Q Consensus       183 Sak~g~Gi~~L~~~i~  198 (275)
                      ||+++.|++++...+.
T Consensus       147 SAk~~~~v~~~F~~l~  162 (175)
T d2bmja1         147 CATYGLNVDRVFQEVA  162 (175)
T ss_dssp             BTTTTBTHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHH
Confidence            9999999998865443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.9e-05  Score=59.91  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=22.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV  251 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGt  251 (275)
                      .||+++|.+|||||||||++.+.......+..+.
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~   35 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGH   35 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeee
Confidence            4799999999999999999997654333333333

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.8e-05  Score=59.78  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||+++...
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4799999999999999999999654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=5.5e-05  Score=59.50  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=21.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||||++++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            589999999999999999999754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=8.5e-05  Score=58.27  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|-+|||||||||++++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            589999999999999999998654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0001  Score=57.94  Aligned_cols=25  Identities=32%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|.+|||||||||++....
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3689999999999999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.18  E-value=8.1e-05  Score=58.67  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||+|+++..+
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            489999999999999999998654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00019  Score=57.34  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|.+|||||||||++++..
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhhCC
Confidence            4799999999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=2.7e-05  Score=61.69  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=10.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      -.||+++|.+|||||||||+|++..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEEEEECCCCC-------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4689999999999999999999644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00017  Score=57.92  Aligned_cols=60  Identities=17%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             cchhHH---HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHH------h--cCCCeEEEEEcccCcCH
Q 023932          103 YPGHIA---KTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQW------L--GNRKRILVLNREDMISM  162 (275)
Q Consensus       103 ~pG~~~---~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~---~l~~~------L--~~kp~IlVlNK~Dl~~~  162 (275)
                      +||+..   ...+.+...+..++.+++++|+.......+.   .+..+      .  .+.|+++|+||+|+...
T Consensus        53 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          53 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            566542   3445555677888999999998765443321   11111      1  16799999999998653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00014  Score=57.18  Aligned_cols=25  Identities=44%  Similarity=0.728  Sum_probs=22.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|++++|.+|||||||||++....
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3789999999999999999999754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0001  Score=58.12  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||||++++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~   27 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGE   27 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC---
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            479999999999999999998654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00014  Score=56.87  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ..||+++|-+||||||||+++....
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            3589999999999999999998654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=56.58  Aligned_cols=25  Identities=44%  Similarity=0.709  Sum_probs=23.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+|++++|-+|||||||||++++..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCC
Confidence            4799999999999999999999765

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00017  Score=57.89  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+||+++|-+|||||||+|++.+..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCC
Confidence            4799999999999999999999654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00016  Score=57.70  Aligned_cols=37  Identities=24%  Similarity=0.183  Sum_probs=28.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      =|+|+|.+|||||||++.|.++..-..-.++.|||..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~   40 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP   40 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCC
Confidence            3789999999999999999875422334467888854

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.94  E-value=0.00021  Score=58.38  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .++|+++|..|+|||||+|+|++
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHH
Confidence            37899999999999999999984

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=8.3e-05  Score=59.80  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |.-|+++|.||+|||||.|+|.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0002  Score=55.35  Aligned_cols=20  Identities=20%  Similarity=0.586  Sum_probs=18.7

Q ss_pred             EEEEeeCCCChhHHHHHHhc
Q 023932          220 AGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++|+|.+|+|||||+|.|++
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999974

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00027  Score=55.74  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||||++.+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            479999999999999999999754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.77  E-value=0.00061  Score=59.86  Aligned_cols=24  Identities=54%  Similarity=0.833  Sum_probs=22.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...+++|.|.|||||||||++|..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            468999999999999999999984

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00031  Score=57.67  Aligned_cols=38  Identities=29%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~~  256 (275)
                      =+.|+|.+||||+||+|.|+.+..  -..-.+|.|||..+
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R   43 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR   43 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCC
Confidence            478999999999999999997642  12345788998754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.75  E-value=0.00035  Score=56.91  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=21.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .++|+|+|..++|||||+|+|++
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            47999999999999999999986

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00061  Score=54.16  Aligned_cols=85  Identities=12%  Similarity=0.062  Sum_probs=51.9

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCC------c---H---HHHHHh-----cCCCeEEEEEcccCcCHH---------------
Q 023932          116 DQLKLMDVVIEVRDARIPLSTT------H---P---LMDQWL-----GNRKRILVLNREDMISMA---------------  163 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~------d---~---~l~~~L-----~~kp~IlVlNK~Dl~~~~---------------  163 (275)
                      ...+.++.+++++|..+.....      .   .   .+...+     .+.|+++++||+|+....               
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~  142 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG  142 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccC
Confidence            4568899999999987653321      1   1   112222     267999999999985421               


Q ss_pred             ---HHHHHHH----HHHHc-------CCeeEEecCccccchhhHHHHHHHH
Q 023932          164 ---DRNAWAT----YFAKQ-------GTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       164 ---~~~~~~~----~~~~~-------g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                         ..+...+    .|...       .+.++++||+++.+++.+.+.+.+.
T Consensus       143 ~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         143 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence               1112222    22221       1235578999999999887766553

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00038  Score=55.44  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+|+.++|-+|||||||+|++.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4789999999999999999984

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00045  Score=54.18  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+|||||||||++++..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            689999999999999999998754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00026  Score=62.80  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932          101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI  160 (275)
Q Consensus       101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~  160 (275)
                      =+.||| ..+..++...++-+|.+|+|||+..+.......+.+...  +.|+++++||+|..
T Consensus       101 iDtPGh-~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         101 IDSPGH-VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA  161 (341)
T ss_dssp             ECCCCC-CSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             EcCCCc-HHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccc
Confidence            467999 567777888889999999999999988777666665543  88999999999964

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.62  E-value=0.00033  Score=54.32  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..+|+|+|.||+|||||.++|.++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.61  E-value=0.0004  Score=53.82  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=23.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +++++|+|.|.||+||||+.+.|.++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0035  Score=56.25  Aligned_cols=85  Identities=9%  Similarity=0.028  Sum_probs=55.8

Q ss_pred             HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH-------------HHHH----HHHHHHHcCC
Q 023932          117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA-------------DRNA----WATYFAKQGT  177 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~-------------~~~~----~~~~~~~~g~  177 (275)
                      .+..+|++|++.|.+  ++..+..+...+.  ++|+++|+||+|.....             .+++    ....+.+.+.
T Consensus       132 ~~~~~d~~l~~~~~~--~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~  209 (400)
T d1tq4a_         132 KFYEYDFFIIISATR--FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  209 (400)
T ss_dssp             TGGGCSEEEEEESSC--CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhcceEEEEecCCC--CCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            367899999988865  4566667777765  79999999999964221             1111    2233334342


Q ss_pred             ---eeEEecCcc--ccchhhHHHHHHHHhch
Q 023932          178 ---KVIFSNGQL--GMGTMKLSRLAKALASD  203 (275)
Q Consensus       178 ---~vi~iSak~--g~Gi~~L~~~i~~l~~~  203 (275)
                         .++.+|+..  ..|+.+|.+.+.+..++
T Consensus       210 ~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence               577888754  45788888887766554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.60  E-value=0.00041  Score=54.17  Aligned_cols=20  Identities=30%  Similarity=0.659  Sum_probs=18.1

Q ss_pred             EEEEeeCCCChhHHHHHHhc
Q 023932          220 AGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++|+|++|+||||||+.|+.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999974

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00055  Score=54.31  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .||+++|.+||||||||++++...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            589999999999999999998643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.00054  Score=54.75  Aligned_cols=115  Identities=15%  Similarity=0.038  Sum_probs=63.5

Q ss_pred             HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhH
Q 023932          116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL  193 (275)
Q Consensus       116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L  193 (275)
                      +.+...+..+.++|+..+.......+.+++.  +.+++++.++++..  .. .+...+....+ ....+++....+..++
T Consensus        79 ~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~  154 (213)
T d1bifa1          79 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDP--EV-IAANIVQVKLG-SPDYVNRDSDEATEDF  154 (213)
T ss_dssp             HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCH--HH-HHHHHHHHTTT-STTTTTSCHHHHHHHH
T ss_pred             HHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHH--HH-HHHhHHHHhcC-CCcccccchHHHHHHH
Confidence            3344556667789998765555555555544  67788888887632  11 11111111111 2234455555556666


Q ss_pred             HHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhc
Q 023932          194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       194 ~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+.+....+...   +-.  .+....+.++|.+|+|||+++|.|.+
T Consensus       155 ~~~l~~~~~~~e---~~~--~~~~~~~~~I~~~n~g~~~lvn~i~g  195 (213)
T d1bifa1         155 MRRIECYENSYE---SLD--EEQDRDLSYIKIMDVGQSYVVNRVAD  195 (213)
T ss_dssp             HHHHHHHHTTCC---CCC--TTTTTTSCEEEEETTTTEEEEECCCS
T ss_pred             HHhhhhcccccc---ccC--ccccCCcCeEecCCCCceeeeccccc
Confidence            655544332211   000  11223457899999999999998776

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0054  Score=53.65  Aligned_cols=81  Identities=11%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             HhhcCeEEEEEeCCCC--CCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHH--------c---CCeeEEecC
Q 023932          118 LKLMDVVIEVRDARIP--LSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK--------Q---GTKVIFSNG  184 (275)
Q Consensus       118 l~~aDlVI~VvDar~p--~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~--------~---g~~vi~iSa  184 (275)
                      ...+|.+++|++...+  .......+.+    ..=++|+||+|+............+..        .   ..+++.+||
T Consensus       165 ~~~aD~~l~v~~P~~Gd~iq~~k~gi~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA  240 (327)
T d2p67a1         165 ARMVDCFISLQIAGGGDDLQGIKKGLME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSA  240 (327)
T ss_dssp             HTTCSEEEEEECC------CCCCHHHHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBG
T ss_pred             hhccceEEEEecCCCchhhhhhchhhhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEe
Confidence            3557887887754322  1111222222    355899999999875543332222221        1   136899999


Q ss_pred             ccccchhhHHHHHHHHhc
Q 023932          185 QLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       185 k~g~Gi~~L~~~i~~l~~  202 (275)
                      .+|.|+++|.+.|.++..
T Consensus       241 ~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         241 LEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             GGTBSHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHH
Confidence            999999999998877654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0008  Score=53.14  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=52.0

Q ss_pred             HHhhcCeEEEEEeCCCCCCC------Cc------HHHHHHh-----cCCCeEEEEEcccCcCHHH---------------
Q 023932          117 QLKLMDVVIEVRDARIPLST------TH------PLMDQWL-----GNRKRILVLNREDMISMAD---------------  164 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s~------~d------~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---------------  164 (275)
                      .+..++.+++++|..+....      ..      ..+...+     .+.|+++++||.|+.....               
T Consensus        65 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~  144 (200)
T d2bcjq2          65 CFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  144 (200)
T ss_dssp             GCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSC
T ss_pred             cccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCC
Confidence            56889999999998654221      01      1122222     2679999999999753210               


Q ss_pred             ---HHHHHHH----HHHcC------CeeEEecCccccchhhHHHHHHHHh
Q 023932          165 ---RNAWATY----FAKQG------TKVIFSNGQLGMGTMKLSRLAKALA  201 (275)
Q Consensus       165 ---~~~~~~~----~~~~g------~~vi~iSak~g~Gi~~L~~~i~~l~  201 (275)
                         ......+    +....      +.++++||++|.|++++.+.+.+..
T Consensus       145 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         145 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence               1111122    22211      2367899999999999988776543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=96.37  E-value=0.00076  Score=56.03  Aligned_cols=24  Identities=42%  Similarity=0.512  Sum_probs=21.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +-+||+++|..++|||||+++|+.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.001  Score=53.08  Aligned_cols=40  Identities=28%  Similarity=0.296  Sum_probs=28.7

Q ss_pred             EEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccceEEE
Q 023932          220 AGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKYVS  259 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~~v~  259 (275)
                      +.|+|.+||||+||++.|+.+.. .-...++.|||-.+.-+
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E   46 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE   46 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCcc
Confidence            78999999999999999986532 23345788998765443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.28  E-value=0.00077  Score=53.03  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+|++++|-.||||||||+.+...
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            478999999999999999999743

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.28  E-value=0.00067  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++|+|+|.||+||||+-+.|.++
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.17  E-value=0.0015  Score=54.98  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|.+|+|||||++.|.+-.
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0013  Score=51.80  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+|+.++|-.|||||||++++..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999974

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0012  Score=55.54  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+.+++|+|.+|+|||||++.|++-.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            35689999999999999999999754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.05  E-value=0.0012  Score=52.44  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|++|+|+|.||+||||+-..|.++
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.00  E-value=0.0018  Score=54.87  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|||.+|+|||||++.|++-.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            35679999999999999999998643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0018  Score=54.67  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=22.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|||.+|+|||||++.|.+-.
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            45689999999999999999999754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.88  E-value=0.0018  Score=49.02  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=18.5

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |++.|.||+|||||.+.|..+
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999998743

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.87  E-value=0.0018  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++.-|+++|.||+||||+-++|.++
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4677999999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.84  E-value=0.019  Score=49.88  Aligned_cols=54  Identities=19%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             CeEEEEEcccCcCHHHHHH-HHHHHHH-----------cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932          149 KRILVLNREDMISMADRNA-WATYFAK-----------QGTKVIFSNGQLGMGTMKLSRLAKALAS  202 (275)
Q Consensus       149 p~IlVlNK~Dl~~~~~~~~-~~~~~~~-----------~g~~vi~iSak~g~Gi~~L~~~i~~l~~  202 (275)
                      .=++|+||+|+.+...... ....+..           ...+++.+||++|.|+++|.+.|.++..
T Consensus       191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            5699999999875543222 1111111           1146999999999999999999877654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.84  E-value=0.0018  Score=51.37  Aligned_cols=24  Identities=38%  Similarity=0.607  Sum_probs=21.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +++|+.|+|.||+||||+-..|.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999974

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.004  Score=48.67  Aligned_cols=105  Identities=12%  Similarity=0.044  Sum_probs=60.4

Q ss_pred             CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---------H---HHHHHhc-----CCC
Q 023932           87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---------P---LMDQWLG-----NRK  149 (275)
Q Consensus        87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d---------~---~l~~~L~-----~kp  149 (275)
                      ...+.+|+....         .........+++.++.+++++|..+..+...         .   .+...+.     +.|
T Consensus        41 ~~~~~i~D~~Gq---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~  111 (195)
T d1svsa1          41 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  111 (195)
T ss_dssp             TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             eeeeeeeccccc---------cccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCC
Confidence            345777875431         2223333346789999999999765422210         1   1122222     569


Q ss_pred             eEEEEEcccCcCHH-----------------HHHHHHH----HHHHc-------CCeeEEecCccccchhhHHHHHHHH
Q 023932          150 RILVLNREDMISMA-----------------DRNAWAT----YFAKQ-------GTKVIFSNGQLGMGTMKLSRLAKAL  200 (275)
Q Consensus       150 ~IlVlNK~Dl~~~~-----------------~~~~~~~----~~~~~-------g~~vi~iSak~g~Gi~~L~~~i~~l  200 (275)
                      +++++||+|+....                 ...+...    .+.+.       .+.++++||+++.|++++.+.+.+.
T Consensus       112 ~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~  190 (195)
T d1svsa1         112 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  190 (195)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence            99999999964221                 1111111    22221       1346689999999999988776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0025  Score=54.71  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|.+|+|||||++.|++--
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            35679999999999999999999753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.67  E-value=0.0023  Score=48.83  Aligned_cols=21  Identities=38%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |+|.|.||+||||+.+.|.+.
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.61  E-value=0.0054  Score=47.90  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .++-|+|.|.+|+|||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            466799999999999999999974

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.53  E-value=0.0031  Score=52.55  Aligned_cols=26  Identities=23%  Similarity=0.243  Sum_probs=22.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+..++|+|.+|+|||||++.|.+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCCC
Confidence            34579999999999999999998744

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.52  E-value=0.0021  Score=54.50  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=22.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+.+++|+|.+|+|||||++.|++-.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            45689999999999999999998654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0094  Score=50.80  Aligned_cols=54  Identities=26%  Similarity=0.325  Sum_probs=36.9

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCCc-cccCCC-CcccccceEEE----------EEEeecccccccc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPR-PGVTRVLKYVS----------QFFLLKYHQKCKV  272 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~-pGtTr~~~~v~----------~~~~~~~~~~~~~  272 (275)
                      .-|+|+|...+|||+|+|.|++... ..+++. -.+|+++ |+-          ..+++++.|+...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Gi-w~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI-WMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE-EEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCce-EEEEeeccCCCCceEEEEeccccccc
Confidence            3588999999999999999997542 223321 1366665 432          2677888877654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0033  Score=52.49  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++++|.+|+|||||+|.|.+-.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4568999999999999999998643

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.30  E-value=0.0037  Score=51.12  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..||+++|.+||||||||+.+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999998643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.28  E-value=0.0029  Score=51.45  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++++|..|+|||||++.|.+-.
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            4468999999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.22  E-value=0.0049  Score=47.28  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -|+|.|.||+||||+-+.|.++
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3788999999999999999865

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.21  E-value=0.0049  Score=51.65  Aligned_cols=25  Identities=12%  Similarity=0.154  Sum_probs=21.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++++|.+|+|||||++.|.+-.
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            4568999999999999999998643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.20  E-value=0.0056  Score=48.42  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|..|+|+|.||+||||+...|.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0055  Score=51.36  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||++.|.+-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            4568999999999999999998754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.15  E-value=0.0033  Score=48.74  Aligned_cols=22  Identities=45%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++.++|.|||||||+-+.|.++
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0046  Score=48.57  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=21.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+||.|+|.||+||||+...|..+
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.05  E-value=0.0056  Score=48.83  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=22.7

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+.+|++|+|.||+||||+-..|..+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            34689999999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.007  Score=47.64  Aligned_cols=26  Identities=35%  Similarity=0.569  Sum_probs=22.1

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +.+.=|+++|.||+||||+...|+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45667899999999999999999754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=94.99  E-value=0.0059  Score=51.01  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRRM  242 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~  242 (275)
                      +.-++++|..|+|||||+|.|.+-..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45689999999999999999997543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.0045  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .|.++|.||+||||+-..|.++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.94  E-value=0.0057  Score=51.22  Aligned_cols=25  Identities=12%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++++|.+|+|||||++.|.+-.
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4579999999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.86  E-value=0.0044  Score=51.59  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.-++++|.+|+|||||++.|.+-.
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4568999999999999999999743

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.81  E-value=0.0061  Score=46.52  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.5

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |+|.|.||+||||+.++|.+.
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.77  E-value=0.0065  Score=50.79  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=22.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.-++++|..|+|||||+|.|.+-.
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4568999999999999999999754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.0035  Score=49.11  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++..|+++|.||+|||||-+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356788999999999999999975

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.74  E-value=0.0074  Score=51.00  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.1

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +..++|+|.+|+|||||+++|.+-.
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4579999999999999999999754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.69  E-value=0.0054  Score=47.46  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +|+++|+||+||||+-..|.++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0054  Score=50.95  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +.-++++|..|+|||||+|.|.+-
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            456899999999999999999973

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.0071  Score=46.24  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -+.++|.||+||||+.++|.++
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3677899999999999999754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.41  E-value=0.005  Score=51.66  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=22.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      ++..++|+|.+|+|||||++.|.+-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            34579999999999999999998744

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.40  E-value=0.0087  Score=50.07  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .++++|.+|+|||||++.|.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999999643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.015  Score=48.76  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-+.+.|.||+|||+|+++|.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            34889999999999999999853

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.27  E-value=0.0098  Score=46.89  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          215 PRAVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .+++-|+|-|..|+||||+++.|.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.26  E-value=0.0081  Score=50.57  Aligned_cols=25  Identities=32%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.-++++|..|+|||||+|.|.+-.
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCC
Confidence            4468999999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.20  E-value=0.021  Score=49.56  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .++|+|.+|+|||||+|+|++
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            489999999999999999995

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.02  Score=50.16  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             ee-EEEEeeCCCChhHHHHHHhc
Q 023932          218 VR-AGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~r-v~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +| |+|+|..+.|||||+.+|+.
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHH
Confidence            54 99999999999999999973

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.019  Score=46.63  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -+.+.|.||+|||||.++|.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.90  E-value=0.016  Score=48.36  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-+.+.|.||+|||+|.++|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            34899999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.82  E-value=0.027  Score=45.66  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +--+.|.|.||+||||++++|.+
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999985

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.016  Score=46.28  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      |+-|+|.|.+++|||||-+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            66799999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.71  E-value=0.011  Score=45.72  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=18.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .|.++|.||+||||+-+.|.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            368899999999999999964

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.67  E-value=0.015  Score=47.16  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.2

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhc
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ++.-|.|.|.||+|||||-+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            466799999999999999999974

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=0.036  Score=45.06  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-+.+.|.||+||||++.+|.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.11  E-value=0.031  Score=45.30  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      -++|.|.+|+|||||++.++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            367889999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.09  E-value=0.052  Score=44.19  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      +.-+++.|.||+|||||..+|.+.-
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4458899999999999999998653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.046  Score=45.46  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      --+.+.|.||+|||+|++++.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            34899999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.93  E-value=0.031  Score=43.76  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             cceeEEEEeeCCCChhHHHHHHhcC
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .|+-|+|.|.+++||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            3678999999999999999998754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.93  E-value=0.024  Score=44.67  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-|.|+|.||+||||+-..|.++
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.87  E-value=0.082  Score=44.72  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      +|+|+|..++|||||+.+|+
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            59999999999999999997

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.51  E-value=0.028  Score=44.21  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...++|+|.||+||||+-..|.++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.061  Score=43.38  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -+.|.|.||+||+|+.++|.++
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999999854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.07  E-value=0.068  Score=42.95  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -++|.|.||+|||||+.+|.++
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999853

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.046  Score=44.53  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..|.|+-|+|||||||.|++.
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            567799999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.12  Score=41.54  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .+.+||.||||||+++..|..+  ..-+.+|-.-++..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r--i~~~~vp~~L~~~~   80 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRR   80 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH--HHHTCSCGGGTTCE
T ss_pred             CeEEEecCCcccHHHHHHHHHH--HHhCCCCHHHcCce
Confidence            5899999999999999999853  33345555555544

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.43  E-value=0.064  Score=43.47  Aligned_cols=22  Identities=23%  Similarity=0.158  Sum_probs=19.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      -.+.|.|.||+|||++.++|++
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.28  E-value=0.076  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ...+.+.|.||+|||+|.++|.+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            345899999999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.071  Score=44.96  Aligned_cols=22  Identities=32%  Similarity=0.438  Sum_probs=19.8

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+++||.||||||+|+..|..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999853

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=90.98  E-value=0.19  Score=42.05  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      +|+|+|..++|||||+.+|+.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            589999999999999999973

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.97  E-value=0.047  Score=45.24  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+.|+++|..+.|||||+.+|+
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHH
Confidence            4689999999999999999995

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.77  E-value=0.027  Score=45.96  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=17.6

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +++.|.||+|||++++++.+.
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.75  E-value=0.075  Score=43.83  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .++|+++|..+.|||||+-+|+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ccEEEEEeCCCCCHHHHHHHHH
Confidence            4799999999999999999986

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=90.69  E-value=0.054  Score=42.93  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      =++|.|.+|+|||||.-.|..+.
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcC
Confidence            37899999999999999988543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=90.19  E-value=0.071  Score=41.84  Aligned_cols=23  Identities=39%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .=++|.|.+|+|||||.-.|+.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            34799999999999999888754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.16  E-value=0.13  Score=41.05  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+.+.|.||+||||++.+|.++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999999853

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=90.01  E-value=0.057  Score=42.74  Aligned_cols=22  Identities=36%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      =++|.|.+|+|||||.-.|..+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            3789999999999999998754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.94  E-value=0.16  Score=42.42  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcCC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      .-++|+|+.|+|||||...+.++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999999999987643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.081  Score=41.97  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=18.1

Q ss_pred             EEEEeeCCCChhHHHHHHhc
Q 023932          220 AGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~  239 (275)
                      |+|-|..|+||||+++.|.+
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.064  Score=42.98  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ..|+|-|.-|+||||+++.|.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.50  E-value=0.078  Score=42.04  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+.|+|-|.||+||||+=..|.++
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            467889999999999999998753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=89.43  E-value=0.02  Score=43.91  Aligned_cols=18  Identities=22%  Similarity=0.381  Sum_probs=16.6

Q ss_pred             EEEeeCCCChhHHHHHHh
Q 023932          221 GIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       221 ~IvG~pNvGKSTLIN~Ll  238 (275)
                      +|+|..|+||||||.||.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999985

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.36  E-value=0.11  Score=41.34  Aligned_cols=21  Identities=38%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +.|.|.||+|||||+.+|.++
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.12  Score=44.46  Aligned_cols=26  Identities=27%  Similarity=0.172  Sum_probs=22.0

Q ss_pred             CCcceeEEEEeeCCCChhHHHHHHhc
Q 023932          214 LPRAVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...+.-|+|.|.+++||||+-+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34578899999999999999888753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.12  Score=41.57  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |..|+|=|.-||||||+++.|.+.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346788899999999999999853

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.92  E-value=0.17  Score=40.25  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.4

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .+.+.|.||+||||+.+.|.+
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            378999999999999998864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.65  E-value=0.13  Score=41.48  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+.|.|.||+||||++.++.+.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999998753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.13  Score=41.12  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=17.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhc
Q 023932          219 RAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      =|+|-|..|+||||+++.|.+
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367779999999998888764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.11  E-value=0.15  Score=41.19  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.2

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .++|+++|.-+.|||||+-+|+
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHH
Confidence            4789999999999999999885

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.06  E-value=0.091  Score=43.77  Aligned_cols=19  Identities=37%  Similarity=0.571  Sum_probs=16.9

Q ss_pred             EEEEeeCCCChhHHHHHHh
Q 023932          220 AGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll  238 (275)
                      -+|+|..|+||||+|.||.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3688999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.13  Score=40.98  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRR  241 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~  241 (275)
                      -|+|.|.+|+||||+.|.|.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHCC
Confidence            48999999999999999887543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.39  E-value=0.26  Score=43.43  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=24.6

Q ss_pred             eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932          219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL  255 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~  255 (275)
                      .+.+||-||||||+|+..|..+  ..-+.+|-.-++.
T Consensus        45 n~llvG~~GvGKtaiv~~la~~--i~~~~vp~~l~~~   79 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGK   79 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTC
T ss_pred             CCeEECCCCCCHHHHHHHHHHH--HHhCCCCHHHcCc
Confidence            4689999999999999988753  2334445444443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=87.35  E-value=0.26  Score=43.05  Aligned_cols=23  Identities=26%  Similarity=0.171  Sum_probs=20.2

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      --+.+.|.||+|||++.++|.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999999853

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.09  E-value=0.21  Score=40.03  Aligned_cols=47  Identities=19%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             HHhhcCeEEEEEeCCCCCC------CCcH------HHHHHh-----cCCCeEEEEEcccCcCHH
Q 023932          117 QLKLMDVVIEVRDARIPLS------TTHP------LMDQWL-----GNRKRILVLNREDMISMA  163 (275)
Q Consensus       117 ~l~~aDlVI~VvDar~p~s------~~d~------~l~~~L-----~~kp~IlVlNK~Dl~~~~  163 (275)
                      ..+.++.+++++|......      ....      .+...+     .+.|++|++||+|+....
T Consensus        67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  130 (221)
T ss_dssp             GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence            4588999999999864311      1111      122222     267999999999997543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=0.32  Score=41.09  Aligned_cols=23  Identities=17%  Similarity=0.017  Sum_probs=19.9

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+.-|+|.|.+|+|||||-+.|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            47789999999999999887764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.13  Score=40.44  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -|+|.|.||+||||+=..|.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999888754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=86.48  E-value=0.21  Score=40.21  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=19.3

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      ++--++++|.+||||+|.+=.|.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45568999999999999987765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=86.45  E-value=0.16  Score=40.17  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .-|+|.|.+++||||+.+.|.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            35899999999999999988643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.27  E-value=0.13  Score=42.72  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      +.-+.+.|.||+|||+|+++|.++
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            345889999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.18  Score=38.48  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=18.5

Q ss_pred             eeEEEEeeCCCChhHHHHHHhc
Q 023932          218 VRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      .-+.|.|.||+|||+|...|+.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            3478999999999999887763

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.91  E-value=0.17  Score=43.04  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eEEEEeeCCCChhHHHHHHhcC
Q 023932          219 RAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      -++++|.|||||+.|.++|.+.
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            4899999999999999999853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=85.88  E-value=0.25  Score=40.00  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+.-+++||.+||||+|.+=.|.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999987775

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=0.23  Score=40.17  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      +.-+++||.+||||+|.+=.|.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999998886

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.57  E-value=0.21  Score=43.19  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .+||+|=|.-|+||||++|.|.+.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: TrmE connector domain
family: TrmE connector domain
domain: TrmE connector domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.56  E-value=0.0023  Score=50.73  Aligned_cols=29  Identities=21%  Similarity=0.040  Sum_probs=25.0

Q ss_pred             CCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932          226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLK  256 (275)
Q Consensus       226 pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~  256 (275)
                      .|+|||||+|.+.+  +..+++.+|+||+..
T Consensus        98 vn~Gkssl~n~~r~--~~~v~~~~~t~~d~i  126 (173)
T d1xzpa1          98 FERGSDSLITNLRQ--KQLLENVKGHLEDAI  126 (173)
T ss_dssp             HHHHTTCSCCSHHH--HHHHHHHHHHHHHHH
T ss_pred             cccccchhhcchhh--HHHHHHHHHHHHHHH
Confidence            49999999999975  578899999999863

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=85.24  E-value=0.14  Score=43.70  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=17.8

Q ss_pred             EEEEeeCCCChhHHHHHHh
Q 023932          220 AGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll  238 (275)
                      +.++|.||+|||+|..+|.
T Consensus        31 vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            7999999999999999885

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.82  E-value=0.85  Score=37.64  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhcC-eEEEEEeCCCCCCCCc-HHHHHHhc--CCCeEEEEEcccCcCHH
Q 023932          109 KTEKELKDQLKLMD-VVIEVRDARIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMA  163 (275)
Q Consensus       109 ~~~k~l~~~l~~aD-lVI~VvDar~p~s~~d-~~l~~~L~--~kp~IlVlNK~Dl~~~~  163 (275)
                      .....+..++.+.+ ++++|.++..+..... ..+.+.+.  ..+.++|+||+|+....
T Consensus       150 ~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred             HHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccccccch
Confidence            34466677787777 5666777766555443 34445454  46899999999998653

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.63  E-value=0.29  Score=40.88  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhc
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLK  239 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~  239 (275)
                      ...+.+.|.++.|||+|+++|..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            34688999999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=84.25  E-value=0.23  Score=40.67  Aligned_cols=20  Identities=15%  Similarity=0.222  Sum_probs=16.6

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      -+.|.|.||+|||||+..|.
T Consensus        37 l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36788999999999976665

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.25  E-value=0.21  Score=43.03  Aligned_cols=19  Identities=26%  Similarity=0.538  Sum_probs=16.8

Q ss_pred             EEEEeeCCCChhHHHHHHh
Q 023932          220 AGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll  238 (275)
                      -+|+|..|+||||+|.||.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999983

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.82  E-value=0.24  Score=39.70  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=19.1

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      ++|.|.+|+|||-|++++.++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.76  E-value=0.36  Score=38.71  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=17.9

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      -++++|.+||||+|.+=.|.
T Consensus        12 vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46889999999999998886

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=83.63  E-value=0.23  Score=43.82  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             EEEEeeCCCChhHHHHHHhcC
Q 023932          220 AGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      |.|.|.+|+||||++.+++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            789999999999999999863

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=83.47  E-value=0.28  Score=42.35  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.6

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+|=|.-|+||||+++.|.+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            578999999999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.19  E-value=0.36  Score=38.45  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             eeEEEEeeCCCChhHHHHHHhcC
Q 023932          218 VRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       218 ~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .=|+|-|.-|+||||+++.|.+.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            34788899999999999998743

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=83.07  E-value=0.33  Score=39.14  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=15.5

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      .+.-+++||.+||||+|.+=.|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35668899999999999987775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.88  E-value=0.28  Score=36.26  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=21.0

Q ss_pred             cceeEEEEeeCCCChhHHHHHHh
Q 023932          216 RAVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       216 ~~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      ++..+.+-|.+|+|||||-|+|.
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHH
Confidence            56789999999999999999996

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=82.41  E-value=0.32  Score=42.38  Aligned_cols=19  Identities=32%  Similarity=0.378  Sum_probs=17.4

Q ss_pred             EEEEeeCCCChhHHHHHHh
Q 023932          220 AGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       220 v~IvG~pNvGKSTLIN~Ll  238 (275)
                      ++|+|.||+|||++++.|+
T Consensus        53 ~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7999999999999998776

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.70  E-value=0.21  Score=42.44  Aligned_cols=20  Identities=15%  Similarity=0.252  Sum_probs=15.4

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      -|+|.|-+++||||+-|+|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=80.44  E-value=0.32  Score=41.91  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=20.8

Q ss_pred             ceeEEEEeeCCCChhHHHHHHhcC
Q 023932          217 AVRAGIVGYPNVGKSSLINRLLKR  240 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll~~  240 (275)
                      .++|+|=|.=|+||||+++.|.+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=0.44  Score=38.67  Aligned_cols=20  Identities=30%  Similarity=0.277  Sum_probs=17.1

Q ss_pred             eEEEEeeCCCChhHHHHHHh
Q 023932          219 RAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       219 rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      -..|.|.||+|||||.-.|.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36689999999999997765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.04  E-value=0.45  Score=37.29  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=18.5

Q ss_pred             ceeEEEEeeCCCChhHHHHHHh
Q 023932          217 AVRAGIVGYPNVGKSSLINRLL  238 (275)
Q Consensus       217 ~~rv~IvG~pNvGKSTLIN~Ll  238 (275)
                      +--+.|.|.||+|||+|...++
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            3357899999999999998776