Citrus Sinensis ID: 023949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccEEEEEEEEccHHcccccccccccccccccHHHHcccHHHHHccccccccccccccccHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHcc
Coil and Loop (DISEMBL)
mrvfrsqggcvairtlspsssinryshahgsapgpaasddatcgtptwigkgltcvcfkrkgtyeRICINLTPQQAERLRRLKHRMKVyfdasrpdHQEALRALWAatypdqelhgLISDQWkemgwqgkdpstdfrgagfISLENLLFFAKTFSTSFQRLLRKqggkradweypfavAGVNITFMLMQMLdleatkprtFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVlqieempsyslls
Flexible Loop (DISEMBL)
mrvfrsqggcvaiRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYericinltpqQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQggkradweyPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMddvlqieempsyslls
Low Complexity Region (SEG)
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Disordered region (IsUnstruct)
*****************************************TCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQ***********
Disordered Region (DISOPRED)
*R************************************DDATCGTPTWIGKGLTCVCFKRKG*YERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATY************WKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLR****KRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Disordered Region (DISEMBL)
********GCVAIRTLSPSSSINR****************ATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Disordered Region (DISPRO)
MRVFRSQGGCVAIRTLSPSSSIN**************SDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q54YW1	977	ELMO domain-containing pr	yes	no	0.636	0.179	0.319	3e-26
Q54RS7	618	ELMO domain-containing pr	no	no	0.64	0.284	0.328	3e-24
Q54VR8	284	ELMO domain-containing pr	no	no	0.629	0.609	0.283	6e-20
Q8BGF6	293	ELMO domain-containing pr	yes	no	0.894	0.839	0.275	2e-19
Q5NVD7	326	ELMO domain-containing pr	yes	no	0.643	0.542	0.320	3e-18
Q8IZ81	293	ELMO domain-containing pr	no	no	0.6	0.563	0.286	9e-18
Q0IIE6	326	ELMO domain-containing pr	yes	no	0.643	0.542	0.315	1e-17
Q54UP9	1267	Ankyrin repeat and ELMO d	no	no	0.614	0.133	0.291	2e-17
Q8N336	334	ELMO domain-containing pr	yes	no	0.643	0.529	0.312	2e-17
Q3V1U8	326	ELMO domain-containing pr	no	no	0.643	0.542	0.310	2e-17

>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 19/194 (9%)

Query: 75  QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
           Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query: 135 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 194
           DFR  G   L+NL++FA+ ++  F++++  Q   R + EYP A AG+ +TF L   +   
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480

Query: 195 AT---KPRTFVRSV---------------FLQMLSDNEWAFDLLYCVAFVVMDKQWLERN 236
            T    P     S                F  +   +  AF+ +YC  F ++D  W + N
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540

Query: 237 ATYMEFNDVLKSTR 250
            TYM F  ++ S +
Sbjct: 541 GTYMHFQKIMSSVK 554

Functions as a negative regulator of actin polymerization. Modulates actin/myosin II at cortex actinomyosins to prevent excessive F-actin polymerization around the cell periphery, thereby maintaining proper cell shape during phagocytosis and chemotaxis.
Dictyostelium discoideum (taxid: 44689)

>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 16/192 (8%)

Query: 71  LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 130
           +T +Q++ ++ L  +    ++++ PDH+E L+ LW+  YP+QE     S  WK+ G+Q  
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query: 131 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 187
           DP+ DFRG G + L NL+   +  +   Q +L +      D +YPFAVAG+NI+   F +
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469

Query: 188 MQMLDLEATKPRTFVR------SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 241
            Q+ +    +P           ++   M   N+ AF+ LY + F ++D  W++ NATYM 
Sbjct: 470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529

Query: 242 FNDVLKSTRAQL 253
           F  V+K  ++QL
Sbjct: 530 FPLVIKKLKSQL 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 14/187 (7%)

Query: 80  RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 139
           + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query: 140 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 199
           G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D    K  
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIY 224

Query: 200 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERN-ATYMEFNDVLKSTRAQLERELL 258
            F     L         F+ LY + F+  D+ +  +   + MEFN + K    ++ +   
Sbjct: 225 FFKNGSTLT-------QFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQN-- 275

Query: 259 MDDVLQI 265
             D++Q+
Sbjct: 276 -SDLVQL 281

Dictyostelium discoideum (taxid: 44689)

>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 19/265 (7%)

Query: 2   RVFRSQGGCVAIRTLSPSSSINRYSHAH--GSAPGPAASDDATCGTPTWIGKGLTCVCFK 59
           R+F + GG  A RT    +S+  YS      +A   A S+   C       K    +C +
Sbjct: 33  RIFDTYGG--AQRTYRIENSLT-YSKNKVLQNATRVAQSELDRCIANIMKEKN---ICSE 86

Query: 60  RKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPDQELH 115
           +  +++ IC+     Q    ++L H +    K  +D++   H++ L  LW+   P ++L 
Sbjct: 87  KDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLT 145

Query: 116 GLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYP 175
             IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +    Y 
Sbjct: 146 ARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YS 203

Query: 176 FAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLER 235
           +A+ G+N+T M   +L  EA K   +    F+  +   E  F   YC      DK WLE 
Sbjct: 204 YAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKFWLEE 259

Query: 236 NATYMEFNDVLKSTRAQLERELLMD 260
               + + ++ +    +  + LLMD
Sbjct: 260 EPESIMYFNLYREKFHERIKGLLMD 284

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 26/203 (12%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  +T+ Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
           +NIT +   +L   A K   +  +     LS     F   +C       K W+E +    
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288

Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
           MEFN V +  R ++ ++L   D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Pongo abelii (taxid: 9601)

>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 90  FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 149
           +D+    H+E L  LW    P ++L+  IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179

Query: 150 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 209
           F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K   +     +  
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPT 237

Query: 210 LSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMD 260
           +      F   YC      DK W E     + + ++ +    +  + LL+D
Sbjct: 238 MEH----FHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKIKGLLLD 284

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family. Regulates IFN-related antiviral responses.

Homo sapiens (taxid: 9606)

>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 26/203 (12%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  + + Q++L      +     +A+WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
           +NIT +   +L   A K   +  +     LS     F   +C       K W+E +    
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288

Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
           MEFN V +  R ++ ++L   D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Bos taurus (taxid: 9913)

>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%)

Query: 75  QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
           Q  +++ L    K  ++   P HQ  L  LW+  +P+Q       + W+ +G+Q KDPS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344

Query: 135 DFRGAGFISLENLLFFAKTFSTSFQR-LLRKQGGKRADWEYPFAVAGVNITFMLMQMLD- 192
           DFRG G   L++L++ A+     F   L+ +Q    A++ YP+A +G+ +T  L++ +  
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQ--PEANY-YPYATSGIQVTSFLVECVKP 401

Query: 193 LEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
           +  +   + V      +L ++E A + +YCV   +    W + NATYM F  V +
Sbjct: 402 INISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456

Dictyostelium discoideum (taxid: 44689)

>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2 SV=3

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREA------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 173
           FRG G + L NL +FA+  +T+ Q++L            +++  K  +A+WE        
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232

Query: 174 -YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
            Y FA+ G+NIT +   +L   A K   +  +     LS     F   +C       K W
Sbjct: 233 GYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFW 288

Query: 233 LERNAT-YMEFNDVLKSTRAQLERELLMDDV 262
           +E +    MEFN V +  R ++ ++L   D+
Sbjct: 289 IEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 319

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Homo sapiens (taxid: 9606)

>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 26/203 (12%)

Query: 76  AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
            E+LRR        +D+  P H+E L  LW    P+  L   +S QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTD 172

Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
           FRG G + L NL +FA+  +T  Q++L      +     + +WE         Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVG 232

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
           +NIT +   +L   A K   +  +     LS     F   +C       K W+E +    
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288

Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
           MEFN V +  R ++ ++L   D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311

Acts as a GTPase-activating protein (GAP) toward guanine nucleotide exchange factors like ARL2, ARL3, ARF1 and ARF6, but not for GTPases outside the Arf family.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
255547738	259	ELMO domain-containing protein, putative	0.869	0.922	0.903	1e-130
225425436	301	PREDICTED: ELMO domain-containing protei	0.974	0.890	0.843	1e-128
297738445	269	unnamed protein product [Vitis vinifera]	0.974	0.996	0.843	1e-128
449435069	276	PREDICTED: ELMO domain-containing protei	0.869	0.865	0.857	1e-122
224110714	239	predicted protein [Populus trichocarpa]	0.861	0.991	0.869	1e-122
194693986	287	unknown [Zea mays] gi|413920846|gb|AFW60	0.952	0.912	0.755	1e-118
108864397	285	phagocytosis and cell motility protein E	0.963	0.929	0.755	1e-118
297841427	304	predicted protein [Arabidopsis lyrata su	0.989	0.894	0.75	1e-118
51968574	304	unknown protein [Arabidopsis thaliana]	0.989	0.894	0.742	1e-117
79374282	281	ELMO/CED-12 domain-containing protein [A	0.989	0.967	0.746	1e-117

>gi|255547738|ref|XP_002514926.1| ELMO domain-containing protein, putative [Ricinus communis] gi|223545977|gb|EEF47480.1| ELMO domain-containing protein, putative [Ricinus communis]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/239 (90%), Positives = 233/239 (97%)

Query: 37  ASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPD 96
           +SDDATCGTPTWIGKGLTCVCFKRKG YERICINLTP Q ERL+RL+HRMK+YFDASRPD
Sbjct: 21  SSDDATCGTPTWIGKGLTCVCFKRKGAYERICINLTPHQEERLKRLRHRMKIYFDASRPD 80

Query: 97  HQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFST 156
           HQEALRALW+ATYPDQ+L GLISDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFST
Sbjct: 81  HQEALRALWSATYPDQQLRGLISDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFST 140

Query: 157 SFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWA 216
           SFQRLL+KQGGKR+ WEYPFAVAGVN+TFM+MQMLDL+A+KPRTFVRSVFLQMLS+NEWA
Sbjct: 141 SFQRLLKKQGGKRSAWEYPFAVAGVNVTFMIMQMLDLDASKPRTFVRSVFLQMLSENEWA 200

Query: 217 FDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS 275
           FDLLYCVAFVVMDKQWLERNATYMEFNDVLK TRAQ+ERELLMDDVL+IE+MPSYSLLS
Sbjct: 201 FDLLYCVAFVVMDKQWLERNATYMEFNDVLKCTRAQVERELLMDDVLRIEDMPSYSLLS 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425436|ref|XP_002271815.1| PREDICTED: ELMO domain-containing protein A-like [Vitis vinifera]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/274 (84%), Positives = 252/274 (91%), Gaps = 6/274 (2%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKR 60
           M + R+QG CVAIRTLSPSS ++R  HA  S+     SDD TCGTPTWIG+GLTCVCFKR
Sbjct: 33  MSLERTQGSCVAIRTLSPSS-VSRCPHASASS-----SDDVTCGTPTWIGRGLTCVCFKR 86

Query: 61  KGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISD 120
           KGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDHQEALRALW+ATYP QELHGLIS+
Sbjct: 87  KGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDHQEALRALWSATYPGQELHGLISE 146

Query: 121 QWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAG 180
           QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS SFQ LL+KQ GKRA WEYPFAVAG
Sbjct: 147 QWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQLLLKKQRGKRAAWEYPFAVAG 206

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYM 240
           VNITFM+MQMLDL+A+KPRTFVR+VFLQMLS+NEWAFDLLYCVAF+VMDKQWL+RNATYM
Sbjct: 207 VNITFMIMQMLDLDASKPRTFVRAVFLQMLSENEWAFDLLYCVAFMVMDKQWLDRNATYM 266

Query: 241 EFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLL 274
           EFNDVLKSTRAQLE+ELLMDDVL+IE+MPSY LL
Sbjct: 267 EFNDVLKSTRAQLEKELLMDDVLRIEDMPSYGLL 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738445|emb|CBI27646.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/274 (84%), Positives = 252/274 (91%), Gaps = 6/274 (2%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKR 60
           M + R+QG CVAIRTLSPSS ++R  HA  S+     SDD TCGTPTWIG+GLTCVCFKR
Sbjct: 1   MSLERTQGSCVAIRTLSPSS-VSRCPHASASS-----SDDVTCGTPTWIGRGLTCVCFKR 54

Query: 61  KGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISD 120
           KGTYERICINLTP Q ERLRRL+HRMKVYFDASRPDHQEALRALW+ATYP QELHGLIS+
Sbjct: 55  KGTYERICINLTPHQEERLRRLRHRMKVYFDASRPDHQEALRALWSATYPGQELHGLISE 114

Query: 121 QWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAG 180
           QWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS SFQ LL+KQ GKRA WEYPFAVAG
Sbjct: 115 QWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSISFQLLLKKQRGKRAAWEYPFAVAG 174

Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYM 240
           VNITFM+MQMLDL+A+KPRTFVR+VFLQMLS+NEWAFDLLYCVAF+VMDKQWL+RNATYM
Sbjct: 175 VNITFMIMQMLDLDASKPRTFVRAVFLQMLSENEWAFDLLYCVAFMVMDKQWLDRNATYM 234

Query: 241 EFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLL 274
           EFNDVLKSTRAQLE+ELLMDDVL+IE+MPSY LL
Sbjct: 235 EFNDVLKSTRAQLEKELLMDDVLRIEDMPSYGLL 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435069|ref|XP_004135318.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus] gi|449494913|ref|XP_004159681.1| PREDICTED: ELMO domain-containing protein A-like [Cucumis sativus]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/239 (85%), Positives = 224/239 (93%)

Query: 36  AASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRP 95
           ++SD  TCGTPTWIGKG+TC+CFKRKG+ ERICINLTP Q +RLRRLKHRMKVYFD SR 
Sbjct: 32  SSSDYVTCGTPTWIGKGITCICFKRKGSLERICINLTPVQEDRLRRLKHRMKVYFDGSRI 91

Query: 96  DHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFS 155
           +HQEALRALW A YP QEL  L+SDQWKEMGWQG+DPSTDFRGAGFISLENLLFFAKTFS
Sbjct: 92  NHQEALRALWYAAYPGQELQALVSDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFS 151

Query: 156 TSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEW 215
           TSFQ LLRKQGGK A WEYPFAVAGVNITFM+MQMLDL+A+KPRTF+RSVFLQMLS+NEW
Sbjct: 152 TSFQLLLRKQGGKPAAWEYPFAVAGVNITFMIMQMLDLDASKPRTFIRSVFLQMLSENEW 211

Query: 216 AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLL 274
           AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLE+ELLM+DVL+IE+MPSY+LL
Sbjct: 212 AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLEKELLMEDVLRIEDMPSYNLL 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110714|ref|XP_002315612.1| predicted protein [Populus trichocarpa] gi|222864652|gb|EEF01783.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/238 (86%), Positives = 227/238 (95%), Gaps = 1/238 (0%)

Query: 38  SDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDH 97
           +DDATCG+PTWIGKGLTCVCFKRKG YERICINLTPQQA+RL+RLK RMKVYFDASRP+H
Sbjct: 1   ADDATCGSPTWIGKGLTCVCFKRKGAYERICINLTPQQAKRLKRLKDRMKVYFDASRPEH 60

Query: 98  QEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFR-GAGFISLENLLFFAKTFST 156
           Q+ALRALW+ATYPD+EL GLISDQWKEMGWQG+DPSTDFR GAGF+SLENL+FFAKTFS 
Sbjct: 61  QDALRALWSATYPDRELSGLISDQWKEMGWQGRDPSTDFRLGAGFLSLENLVFFAKTFSI 120

Query: 157 SFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWA 216
           SFQ LLRKQGGKR+ WEYPFAVAGVNITFM+MQMLDL+A KPRTFVR VFLQ+LS++EWA
Sbjct: 121 SFQHLLRKQGGKRSAWEYPFAVAGVNITFMIMQMLDLDAMKPRTFVRPVFLQILSESEWA 180

Query: 217 FDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLL 274
           FDLLYCVAFVVMD QWL RNATYMEFNDVLKSTRAQ+ERELLMDDVL+IE+MPSYSLL
Sbjct: 181 FDLLYCVAFVVMDNQWLHRNATYMEFNDVLKSTRAQVERELLMDDVLRIEDMPSYSLL 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194693986|gb|ACF81077.1| unknown [Zea mays] gi|413920846|gb|AFW60778.1| hypothetical protein ZEAMMB73_514808 [Zea mays]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/266 (75%), Positives = 235/266 (88%), Gaps = 4/266 (1%)

Query: 9   GCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERIC 68
           GC+A+RT  P  +I     +        +SD+ +CG+P WIG+GL+CVC KRKGTYERIC
Sbjct: 25  GCLAVRTSLPRCAIGAGGGSSLPG----SSDETSCGSPRWIGRGLSCVCIKRKGTYERIC 80

Query: 69  INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQ 128
           +NLTP Q ERL+RLKHRMKVYFD SR DHQEAL+ALW ATYPDQEL GLIS+QWK+MGWQ
Sbjct: 81  MNLTPVQEERLQRLKHRMKVYFDPSRRDHQEALKALWHATYPDQELEGLISEQWKDMGWQ 140

Query: 129 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLM 188
           G+DPSTDFRGAGFISLENLLFFAKTFS SFQRLL KQ G RA WEYPFAVAGVNITFM+M
Sbjct: 141 GRDPSTDFRGAGFISLENLLFFAKTFSASFQRLLNKQCGNRATWEYPFAVAGVNITFMIM 200

Query: 189 QMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKS 248
           QMLDL++TKPRTFVR++F+QMLS++EWAFDLLYCVAFVVMDKQWL++NA+YM+FN+VLKS
Sbjct: 201 QMLDLQSTKPRTFVRAIFIQMLSEDEWAFDLLYCVAFVVMDKQWLDKNASYMDFNEVLKS 260

Query: 249 TRAQLERELLMDDVLQIEEMPSYSLL 274
           TRAQLEREL++DDV++IE+MPSYSLL
Sbjct: 261 TRAQLERELMLDDVIRIEDMPSYSLL 286

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108864397|gb|ABA93689.2| phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa Japonica Group] gi|218185744|gb|EEC68171.1| hypothetical protein OsI_36117 [Oryza sativa Indica Group] gi|222615973|gb|EEE52105.1| hypothetical protein OsJ_33903 [Oryza sativa Japonica Group]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/266 (75%), Positives = 235/266 (88%), Gaps = 1/266 (0%)

Query: 9   GCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERIC 68
           GC+A+R   P  S+        +A G  +SD+A+CG+P WIGK L+CVC KRKG YERIC
Sbjct: 20  GCLAVRAPVPRCSLGGGGGGGAAAMG-GSSDEASCGSPRWIGKSLSCVCIKRKGAYERIC 78

Query: 69  INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQ 128
           +NLTP Q ERL+RL+HRMKVYFD SR DHQEAL+ALW ATYPDQEL GLIS+QWK+MGWQ
Sbjct: 79  MNLTPVQEERLQRLRHRMKVYFDPSRRDHQEALKALWHATYPDQELQGLISEQWKDMGWQ 138

Query: 129 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLM 188
           G+DPSTDFRGAGFISLENLLFFAKTFS SFQRLL+KQ G RA WEYPFAVAGVNITFM+M
Sbjct: 139 GRDPSTDFRGAGFISLENLLFFAKTFSASFQRLLKKQCGNRATWEYPFAVAGVNITFMIM 198

Query: 189 QMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKS 248
           QMLDL++TKPRTFVR+VF+QMLS++EWAFDLLYCVAFVVMDKQWL++NA+YM+FN++LKS
Sbjct: 199 QMLDLQSTKPRTFVRAVFIQMLSEDEWAFDLLYCVAFVVMDKQWLDKNASYMDFNEILKS 258

Query: 249 TRAQLERELLMDDVLQIEEMPSYSLL 274
           TR QLERELL+DDV++IE+MPSYSLL
Sbjct: 259 TRTQLERELLLDDVMRIEDMPSYSLL 284

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841427|ref|XP_002888595.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334436|gb|EFH64854.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/284 (75%), Positives = 238/284 (83%), Gaps = 12/284 (4%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAH-----GSAPG--PAASDDATCG-TPTW-IGK 51
           MRV R    CV  R LSP SS  R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct: 24  MRVVRI--SCVGTRHLSPPSSA-RGCDAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 80

Query: 52  GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
            LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK YFDASRPDHQ+ALRALW+ATYP 
Sbjct: 81  SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYFDASRPDHQDALRALWSATYPS 140

Query: 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
           ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL+KQGGKRA 
Sbjct: 141 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLKKQGGKRAA 200

Query: 172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 231
           WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS+NEWAFDLLYCVAFVVMDKQ
Sbjct: 201 WEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSENEWAFDLLYCVAFVVMDKQ 260

Query: 232 WLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS 275
           WL++NATYMEFNDVL+STR QLE+EL+MDDV +IE+MPS+SLLS
Sbjct: 261 WLDKNATYMEFNDVLRSTRGQLEKELMMDDVFRIEDMPSFSLLS 304

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968574|dbj|BAD42979.1| unknown protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 238/284 (83%), Gaps = 12/284 (4%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAH-----GSAPG--PAASDDATCG-TPTW-IGK 51
           MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct: 24  MRVVRI--SCVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 80

Query: 52  GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
            LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct: 81  SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 140

Query: 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
           ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct: 141 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 200

Query: 172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 231
           W+YPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EWAFDLLYCVAFVVMDKQ
Sbjct: 201 WKYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQ 260

Query: 232 WLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS 275
           WL++NATYMEFNDVL+ TR QLEREL+MDDV +IE+MPS+SLLS
Sbjct: 261 WLDKNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMPSFSLLS 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79374282|ref|NP_564897.2| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana] gi|332196519|gb|AEE34640.1| ELMO/CED-12 domain-containing protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/284 (74%), Positives = 238/284 (83%), Gaps = 12/284 (4%)

Query: 1   MRVFRSQGGCVAIRTLSPSSSINRYSHAH-----GSAPG--PAASDDATCG-TPTW-IGK 51
           MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct: 1   MRVVRI--SCVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 57

Query: 52  GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
            LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct: 58  SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 117

Query: 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
           ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct: 118 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 177

Query: 172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 231
           WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EWAFDLLYCVAFVVMDKQ
Sbjct: 178 WEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQ 237

Query: 232 WLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS 275
           WL++NATYMEFNDVL+ TR QLEREL+MDDV +IE+MPS+SLLS
Sbjct: 238 WLDKNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMPSFSLLS 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2019544	281	AT1G67400 [Arabidopsis thalian	0.989	0.967	0.746	1.1e-108
TAIR|locus:2042456	266	AT2G44770 "AT2G44770" [Arabido	0.949	0.981	0.579	2.8e-82
TAIR|locus:2081947	266	AT3G60260 "AT3G60260" [Arabido	0.945	0.977	0.582	3.2e-81
TAIR|locus:2096389	323	AT3G03610 "AT3G03610" [Arabido	0.84	0.715	0.594	7e-70
TAIR|locus:2020753	265	AT1G03620 "AT1G03620" [Arabido	0.861	0.894	0.551	2.1e-68
TAIR|locus:2102276	213	AT3G43400 "AT3G43400" [Arabido	0.498	0.643	0.808	7.3e-59
DICTYBASE|DDB_G0278051	977	elmoA "engulfment and cell mot	0.407	0.114	0.389	1.1e-25
DICTYBASE|DDB_G0282949	618	elmoC "engulfment and cell mot	0.64	0.284	0.343	1.2e-24
DICTYBASE|DDB_G0280179	284	elmoB "engulfment and cell mot	0.629	0.609	0.283	6.2e-24
FB|FBgn0037473	316	CG10068 [Drosophila melanogast	0.6	0.522	0.323	3.4e-22

TAIR|locus:2019544 AT1G67400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 212/284 (74%), Positives = 238/284 (83%)

Query:     1 MRVFRSQGGCVAIRTLSPSSSINRYSHAHG-----SAPG--PAASDDATCG-TPTW-IGK 51
             MRV R    CV  R LSP SS+ R   AH      S+ G   A ++DA+C  TP+W I K
Sbjct:     1 MRVVRIS--CVGTRHLSPPSSV-RGCEAHSDDVSASSAGLINADAEDASCSSTPSWRIKK 57

Query:    52 GLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD 111
              LTCVCF RK  YERIC NLTP Q ERL+RL+ RMK Y+DASRPDHQ+ALRALW+ATYPD
Sbjct:    58 SLTCVCFNRKRAYERICSNLTPLQEERLKRLRKRMKNYYDASRPDHQDALRALWSATYPD 117

Query:   112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAD 171
             ++L  LISDQWK MGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL KQGGKRA 
Sbjct:   118 EKLQDLISDQWKNMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLNKQGGKRAA 177

Query:   172 WEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQ 231
             WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EWAFDLLYCVAFVVMDKQ
Sbjct:   178 WEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFDLLYCVAFVVMDKQ 237

Query:   232 WLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS 275
             WL++NATYMEFNDVL+ TR QLEREL+MDDV +IE+MPS+SLLS
Sbjct:   238 WLDKNATYMEFNDVLRCTRGQLERELMMDDVFRIEDMPSFSLLS 281

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2042456 AT2G44770 "AT2G44770" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 156/269 (57%), Positives = 207/269 (76%)

Query:     7 QGGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYER 66
             +G  VA+R +S    + R     GS    ++S +A  G+  W+G+GL+CVC +R+ +   
Sbjct:     5 EGSFVAVRRIS--QGLER-----GSVYN-SSSAEAVPGSAAWLGRGLSCVCAQRRDSDAN 56

Query:    67 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMG 126
                +LTP Q E L+ L++R+ V +D++ P HQEALR LW  ++P++ELHGLIS+QWKEMG
Sbjct:    57 STFDLTPAQEECLQSLQNRIDVAYDSTIPLHQEALRELWKLSFPEEELHGLISEQWKEMG 116

Query:   127 WQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFM 186
             WQGKDPSTDFRG GFISLENLL+FA+ F  SFQ LLRKQ G R+ WEYPFAVAG+N+TFM
Sbjct:   117 WQGKDPSTDFRGGGFISLENLLYFARNFQKSFQDLLRKQVGDRSVWEYPFAVAGINLTFM 176

Query:   187 LMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVL 246
             L+QMLDLEA KPRT V + FL+ LS+NE AFDLLYC+AF +MD+QWL   A+YMEFN V+
Sbjct:   177 LIQMLDLEAVKPRTIVGATFLKFLSENESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVM 236

Query:   247 KSTRAQLERELLMDDVLQIEEMPSYSLLS 275
             KSTR QLEREL+++D++ +E++PSY+LL+
Sbjct:   237 KSTRRQLERELMLEDIMHLEDLPSYALLN 265

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2081947 AT3G60260 "AT3G60260" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 156/268 (58%), Positives = 198/268 (73%)

Query:     8 GGCVAIRTLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGKGLTCVCFKRKGTYERI 67
             G  VA+R +S    + R S  H S      S +   G+  W+G+GL+CVC + +    R 
Sbjct:     6 GSFVAVRRIS--QGLERGSVYHSS------SAEVVAGSAAWLGRGLSCVCVQGRDGDPRP 57

Query:    68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGW 127
               +LTP Q E L+RL+ R+ V +D+S P HQEAL+ LW   +P++ELHG++SDQWKEMGW
Sbjct:    58 SFDLTPAQEECLQRLQSRIDVAYDSSIPQHQEALKDLWKLAFPEEELHGIVSDQWKEMGW 117

Query:   128 QGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 187
             QGKDPSTDFRG GFISLENLL+FA+ F  SF  LLRKQ G R+ WEYPFAVAG+NITFML
Sbjct:   118 QGKDPSTDFRGGGFISLENLLYFARKFPKSFHGLLRKQVGDRSVWEYPFAVAGINITFML 177

Query:   188 MQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
             +QMLDLEA KPR+ V   FL+ LS NE AFDLLYC+AF +MD+QWL   A+YMEFN V+K
Sbjct:   178 IQMLDLEAVKPRSIVGETFLRFLSVNESAFDLLYCIAFKLMDQQWLSMRASYMEFNTVMK 237

Query:   248 STRAQLERELLMDDVLQIEEMPSYSLLS 275
             STR QLERE++++D+  +E++PSYSLLS
Sbjct:   238 STRRQLEREIMIEDITSLEDLPSYSLLS 265

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

TAIR|locus:2096389 AT3G03610 "AT3G03610" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 138/232 (59%), Positives = 173/232 (74%)

Query:    44 GTPTWIGKGLTCVCFKRKGTYERICIN-LTPQQAERLRRLKHRMKVYFDASRPDHQEALR 102
             G+ + +G+ L+   F + GT  R+    L+  Q ERLR +K R+++ FD SR +HQ+ALR
Sbjct:    90 GSGSLVGRFLSLPTFGQIGTGGRLLPPPLSMLQEERLRNIKRRIEIPFDGSRMEHQDALR 149

Query:   103 ALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL 162
              LW   YP +EL  L S+ WKEMGWQG DPSTDFRG G+ISLENL+FFAKT+  SFQRLL
Sbjct:   150 QLWRLAYPQRELPPLKSELWKEMGWQGTDPSTDFRGGGYISLENLIFFAKTYPESFQRLL 209

Query:   163 RKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYC 222
              KQ G RA+WEYPFAVAG+NI+FML QMLDL++ KP T     FL  L ++E AFD LYC
Sbjct:   210 HKQDGTRAEWEYPFAVAGINISFMLAQMLDLQSGKPSTIAGIRFLGFLEEDEMAFDNLYC 269

Query:   223 VAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLL 274
             +AF +MD QWL R A+YMEFNDVLKSTRAQLEREL +DDV  I ++P+++LL
Sbjct:   270 IAFQMMDAQWLARRASYMEFNDVLKSTRAQLERELALDDVSSITDLPAFNLL 321

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2020753 AT1G03620 "AT1G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 133/241 (55%), Positives = 180/241 (74%)

Query:    35 PAASDDATCGTPTWIGKGLTCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASR 94
             P  +     GT +WIG GL     +R+   + +   L+P Q ERL+RL+ RM V FD +R
Sbjct:    26 PVVTATGMVGTRSWIG-GLFTRSNRRQD--KAVDYTLSPLQEERLQRLQDRMVVPFDETR 82

Query:    95 PDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTF 154
             PDHQE+L+ALW   +P+  L GL+++QWKEMGWQG +PSTDFRG GFI+LENLLF A+T+
Sbjct:    83 PDHQESLKALWNVAFPNVHLTGLVTEQWKEMGWQGPNPSTDFRGCGFIALENLLFSARTY 142

Query:   155 STSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQMLSDN 213
                F+RLL KQ G RA WEYPFAVAG+NI+FML+QMLDL+   KP+      FL++L ++
Sbjct:   143 PVCFRRLLLKQRGDRAKWEYPFAVAGINISFMLIQMLDLQNNPKPKCLPGMNFLKLLEED 202

Query:   214 EWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSL 273
             E AFD+LYC+AF +MD QWL  +A+YMEFN+VL++TR QLEREL +DD+ +I+++P+Y+L
Sbjct:   203 ERAFDVLYCIAFAMMDAQWLAMHASYMEFNEVLQATRNQLERELSLDDIHRIQDLPAYNL 262

Query:   274 L 274
             L
Sbjct:   263 L 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2102276 AT3G43400 "AT3G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/141 (80%), Positives = 127/141 (90%)

Query:   107 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
             +TY D++L  LISDQWK MGWQ KDPSTDFRG GFISLENL FFAKTFS    RLL+KQG
Sbjct:    71 STYADEKLQDLISDQWKNMGWQRKDPSTDFRGDGFISLENLRFFAKTFS----RLLKKQG 126

Query:   167 GKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFV 226
             GKRA WEYPFAVAGVNITFM+MQMLDLEA+KPR+F+R VFLQMLS++EWAF LLYCVAFV
Sbjct:   127 GKRAAWEYPFAVAGVNITFMIMQMLDLEASKPRSFIRLVFLQMLSESEWAFGLLYCVAFV 186

Query:   227 VMDKQWLERNATYMEFNDVLK 247
             VMDKQWL++NATYMEFNDVL+
Sbjct:   187 VMDKQWLDKNATYMEFNDVLR 207

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

DICTYBASE|DDB_G0278051 elmoA "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 44/113 (38%), Positives = 70/113 (61%)

Query:    75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
             Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP T
Sbjct:   362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421

Query:   135 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFML 187
             DFR  G   L+NL++FA+ ++  F++++  Q  ++ + EYP A AG+ +TF L
Sbjct:   422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRK-EREYPTATAGIVLTFEL 473

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0050764 "regulation of phagocytosis" evidence=IMP

GO:0048870 "cell motility" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030587 "sorocarp development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0282949 elmoC "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 289 (106.8 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 66/192 (34%), Positives = 110/192 (57%)

Query:    71 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 130
             +T +Q++ ++ L  +    ++++ PDH+E L+ LW+  YP+QE     S  WK+ G+Q  
Sbjct:   357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415

Query:   131 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 187
             DP+ DFRG G + L NL+   +  +   Q +L +      D +YPFAVAG+NI+   F +
Sbjct:   416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469

Query:   188 MQMLDLEATKP--RTFVRSVFLQMLSD----NEWAFDLLYCVAFVVMDKQWLERNATYME 241
              Q+ +    +P   +F  S ++ ML      N+ AF+ LY + F ++D  W++ NATYM 
Sbjct:   470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529

Query:   242 FNDVLKSTRAQL 253
             F  V+K  ++QL
Sbjct:   530 FPLVIKKLKSQL 541

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

DICTYBASE|DDB_G0280179 elmoB "engulfment and cell motility ELM family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 53/187 (28%), Positives = 99/187 (52%)

Query:    80 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 139
             + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG 
Sbjct:   108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167

Query:   140 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 199
             G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D    KP 
Sbjct:   168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID----KPH 220

Query:   200 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNA-TYMEFNDVLKSTRAQLERELL 258
              F   ++          F+ LY + F+  D+ +  +   + MEFN + K    ++ +   
Sbjct:   221 -F--KIYFFKNGSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQN-- 275

Query:   259 MDDVLQI 265
               D++Q+
Sbjct:   276 -SDLVQL 281

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037473 CG10068 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 57/176 (32%), Positives = 93/176 (52%)

Query:    80 RRLKHRMKVY----FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
             RRL H+++      +D+   DH++ L  LW    PD  L G ++ QW+++G+QG DP TD
Sbjct:   120 RRLMHQVEQLRAEKYDSDNLDHEQKLLRLWQLLMPDTPLTGRVTKQWQDIGFQGDDPKTD 179

Query:   136 FRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEA 195
             FRG G + LENLL+FA  ++ + + +L           Y +A+ G+N+T M   ++   A
Sbjct:   180 FRGMGMLGLENLLYFATAYNDAAKHVLLHS--MHPTLGYTYAIVGINLTSMAFNLVKTGA 237

Query:   196 TKPRTFVRSVFLQMLSDNEWAFDL--LYCVAFVVMDKQWLERNA-TYMEFNDVLKS 248
              K  T   ++ +Q   D     D   LYC  F   D+ W+E +    M+F ++ +S
Sbjct:   238 AK--THFYNLVVQHRQDFSTVEDFHKLYCYLFFEFDRFWMESDPRNIMDFREIYQS 291

GO:0006909 "phagocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000910 "cytokinesis" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.4780.1 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
pfam04727	170	pfam04727, ELMO_CED12, ELMO/CED-12 family	4e-70

>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family

 Score =  213 bits (544), Expect = 4e-70
 Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 1/171 (0%)

Query: 77  ERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDF 136
             L  L+   K  FD   P+H+  L+ LW A +PD+ L   +S++WK++G+QG DP+TDF
Sbjct: 1   LTLNLLEKLRKTPFDLENPEHRRLLKTLWKALFPDEPLSSRVSEKWKDLGFQGDDPATDF 60

Query: 137 RGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT 196
           RG G + L NLL+FA+ +   FQ+LL +   + A+ EYPFAVA +N+T ML ++L +   
Sbjct: 61  RGTGLLGLLNLLYFAENYPDEFQKLLLESSHRPAEHEYPFAVASINVTSMLYELLRIGKL 120

Query: 197 KPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
               +    F  +      AF+ LYC  F + D+ W E  AT M+FN VL+
Sbjct: 121 DQEDYKNYGF-PLFFPTLLAFEELYCALFHLFDRFWKEMRATIMDFNKVLE 170

This family represents a conserved domain which is found in a number of eukaryotic proteins including CED-12, ELMO I and ELMO II. ELMO1 is a component of signalling pathways that regulate phagocytosis and cell migration and is the mammalian orthologue of the C. elegans gene, ced-12. CED-12 is required for the engulfment of dying cells and cell migration. In mammalian cells, ELMO1 interacts with Dock180 as part of the CrkII/Dock180/Rac pathway responsible for phagocytosis and cell migration. ELMO1 is ubiquitously expressed, although its expression is highest in the spleen, an organ rich in immune cells. ELMO1 has a PH domain and a polyproline sequence motif at its C terminus which are not present in this alignment. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG2998	302	consensus Uncharacterized conserved protein [Funct	100.0
PF04727	170	ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681	100.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	99.97

>KOG2998 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3e-65  Score=465.89  Aligned_cols=254  Identities=52%  Similarity=0.839  Sum_probs=233.8

Q ss_pred             CCceEEEe-ecCCCCccccccCCCCCCCCCCCCccccccCcccccc-----cccccccccCCCcccccccCCHHHHHHHH
Q 023949            7 QGGCVAIR-TLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLR   80 (275)
Q Consensus         7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-----~l~c~~~~~~~~~~~~~~~L~~~Q~~~L~   80 (275)
                      .|..+||+ +.|.+.+   ..     ...+.++.+...|..+|+++     ++.|.|.+.+..+...+..+.+.|++.++
T Consensus        41 ~g~~ra~~~e~sl~~~---~~-----~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~  112 (302)
T KOG2998|consen   41 EGASRAVRTETSLGQE---KP-----LLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQ  112 (302)
T ss_pred             CCCcceeecchhhhhh---hh-----hhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHH
Confidence            56777887 6666655   22     45567888999999999999     99999999999999999999999999999


Q ss_pred             HHHHhhcccCCCCCHHHHHHHHHHHHHhCCCCcCCCCCchhhhhcccCCCCCCCccccchhhhHhhHHHHHhhChHHHHH
Q 023949           81 RLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQR  160 (275)
Q Consensus        81 ~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~~~~~~  160 (275)
                      .+++++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++
T Consensus       113 ~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~  192 (302)
T KOG2998|consen  113 RLEELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQR  192 (302)
T ss_pred             HHHHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcC-CCccchhhhhhhcccCchhhHHHHHHHHHHHHHHHHHhCCCCc
Q 023949          161 LLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATY  239 (275)
Q Consensus       161 ll~~q~~~~~~~~yPfAvasINiT~~L~~~L~~~~~-k~~~~~~~~F~~ll~~~~~~F~eLyc~~F~~f~~~W~e~~at~  239 (275)
                      ++.+|.  ++.|+|||||||||||+|++++|+.++. ++.+.....|     +++.+|+.|||++|..||++|+++++||
T Consensus       193 lL~~s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~si  265 (302)
T KOG2998|consen  193 LLLKSR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATI  265 (302)
T ss_pred             HHHhcC--CCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            999985  4669999999999999999999999997 4444444444     7889999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhhccCCcCCccCCCCCCCCC
Q 023949          240 MEFNDVLKSTRAQLERELLMDDVLQIEEMPSYSLLS  275 (275)
Q Consensus       240 mdF~~Vl~~~r~qL~r~L~~~~~~~v~d~p~~~~~~  275 (275)
                      ||||.|++++|.|++++|.+.|+..++|+|+|++|+
T Consensus       266 mefn~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~  301 (302)
T KOG2998|consen  266 MEFNTVLKSFRRQLERELSLDDVLLITDLPAFNLLL  301 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhc
Confidence            999999999999999999999999999999999985

>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2

Probab=100.00  E-value=4.7e-49  Score=337.94  Aligned_cols=168  Identities=41%  Similarity=0.764  Sum_probs=151.4

Q ss_pred             HHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCCcCCCCCchhhhhcccCCCCCCCccccchhhhHhhHHHHHhhChHH
Q 023949           78 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS  157 (275)
Q Consensus        78 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~~~  157 (275)
                      .|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus         2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~   81 (170)
T PF04727_consen    2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE   81 (170)
T ss_pred             hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence            57899999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhc-ccCchhhHHHHHHHHHHHHHHHHHhCC
Q 023949          158 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSDNEWAFDLLYCVAFVVMDKQWLERN  236 (275)
Q Consensus       158 ~~~ll~~q~~~~~~~~yPfAvasINiT~~L~~~L~~~~~k~~~~~~~~F~~l-l~~~~~~F~eLyc~~F~~f~~~W~e~~  236 (275)
                      +++|+.+|.++.+..+||||+||||||.+|+++|+.+...+  .....+... +.+.+.+|++|||++|..|+++|++++
T Consensus        82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~  159 (170)
T PF04727_consen   82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDS--EFYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMN  159 (170)
T ss_pred             HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCH--HHhhcccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999877666899999999999999999999966432  222222222 567788999999999999999999999


Q ss_pred             CCcccHHHHHH
Q 023949          237 ATYMEFNDVLK  247 (275)
Q Consensus       237 at~mdF~~Vl~  247 (275)
                      +|+|||++|++
T Consensus       160 at~~dF~~V~~  170 (170)
T PF04727_consen  160 ATIMDFNKVLK  170 (170)
T ss_pred             CCHHHHHhhcC
Confidence            99999999975

ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-31  Score=261.17  Aligned_cols=198  Identities=23%  Similarity=0.468  Sum_probs=182.9

Q ss_pred             cccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCCcC-----------CCCCchhhhhcccCC-CCCCCc
Q 023949           68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQEL-----------HGLISDQWKEMGWQG-KDPSTD  135 (275)
Q Consensus        68 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~-----------~~~~~~~Wk~lGFQg-~dP~TD  135 (275)
                      .++|+.+|-..+..+..|+.++.|+.+....++++.+-..+|.++..           .....+..|++||.. .||+.|
T Consensus       275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d  354 (713)
T KOG2999|consen  275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD  354 (713)
T ss_pred             hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence            46899999999999999999999999999999999999999976432           224567999999999 999999


Q ss_pred             cc--cchhhhHhhHHHHHhhChHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhcccCc
Q 023949          136 FR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDN  213 (275)
Q Consensus       136 FR--g~GiLgL~~LlyF~~~~~~~~~~ll~~q~~~~~~~~yPfAvasINiT~~L~~~L~~~~~k~~~~~~~~F~~ll~~~  213 (275)
                      |-  .+|+|+|.||+||+++||+.+.+++.+++++.++++|||+..+|.+|.|||++|+.+.  ++++....|.+++|.+
T Consensus       355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth  432 (713)
T KOG2999|consen  355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH  432 (713)
T ss_pred             cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence            98  7899999999999999999999999999999999999999999999999999999987  6677777899999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhccCCcCCccCC
Q 023949          214 EWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMDDVLQIEEM  268 (275)
Q Consensus       214 ~~~F~eLyc~~F~~f~~~W~e~~at~mdF~~Vl~~~r~qL~r~L~~~~~~~v~d~  268 (275)
                      +..|+++||+|.++|+++|++|+||-.||++|+..+|+||.|+|..+ ++++++.
T Consensus       433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~f  486 (713)
T KOG2999|consen  433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQF  486 (713)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHH
Confidence            99999999999999999999999999999999999999999999876 6666653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 6/34 (17%)

Query: 75  QAERLRRLKHRMKVYFDASRPDHQEALRALWAAT 108
           + + L++L+  +K+Y D S P    AL A+  AT
Sbjct: 18  EKQALKKLQASLKLYADDSAP----AL-AI-KAT 45

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 31/267 (11%), Positives = 64/267 (23%), Gaps = 75/267 (28%)

Query: 48  WIGKGLTCVCFKRKGTYE---RICINLTPQQAERLRR----------LKHRMKVYFDASR 94
           W+       C   +   E   ++   + P    R             ++  ++       
Sbjct: 186 WLNLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KS 240

Query: 95  PDHQEAL--------RALWAA---------TYPDQELHGLISDQWKEMGWQGKDPSTDFR 137
             ++  L           W A         T   ++    ++D            S D  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----VTDF--LSAATTTHISLDHH 294

Query: 138 GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDL---- 193
                  E      K      Q  L ++         P  ++   I   +   L      
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTN----PRRLSI--IAESIRDGLATWDNW 347

Query: 194 --EATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRA 251
                   T +    L +L   E  +  ++     V              F         
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAE--YRKMF-DRLSV--------------FPPSAHIPTI 390

Query: 252 QLER---ELLMDDVLQI-EEMPSYSLL 274
            L     +++  DV+ +  ++  YSL+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00