Citrus Sinensis ID: 023958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccEccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKktdknklyndvvednragfvfvkgfrvddnesASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVgdvqdaarfispdnlygspvspsgqnfaapegrMCNGLIHALISSFDFAKKtlkldqvggiLSNAAIVAVSMIALLHLHQAAYkehpqkqdervysnravrkttqlessspntqlnqLDVMSARG
Flexible Loop (DISEMBL)
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKAlkktdknklyndvvednrAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKehpqkqdervySNRAVRkttqlessspntqlnqldvmsarg
Low Complexity Region (SEG)
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG
Disordered region (IsUnstruct)
*****EIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDD************LNAIRTALENLEDQLEVLHTVQ********AAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLY************APEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAY******************************************
Disordered Region (DISOPRED)
******IDEIEAVLEKIWDLHDKLSDAIHSISRTHF**********************************************AKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFI******************************ALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQA*************************************DVMSARG
Disordered Region (DISEMBL)
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRAVR***********TQLNQLDVMSARG
Disordered Region (DISPRO)
**W*MEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIK****************************RVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNL*******************CNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRA*****************QL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESASAIQEAKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9FK13	272	Plastid division protein	yes	no	0.945	0.955	0.578	8e-80

>sp|Q9FK13|PDV1_ARATH Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1

 Score =  296 bits (759), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/266 (57%), Positives = 197/266 (74%), Gaps = 6/266 (2%)

Query: 12  AVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNK-LYNDVVEDNRAGFVFVKGFR 70
           AVLEKIWDLHDKLSD IH IS++HFL S+K   +++K K  + +  ED R G+VF+KGF 
Sbjct: 11  AVLEKIWDLHDKLSDEIHLISKSHFLKSVKPSNRSEKRKNPHGNSGEDKRPGYVFIKGFA 70

Query: 71  VDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAM 130
           VDDN+S   IQEAKSLNAIRTALENLEDQLE  HT+ T QR EKD AIARLEQSRI+LAM
Sbjct: 71  VDDNDST--IQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQSRILLAM 128

Query: 131 RLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIH 190
           RL+EHHGK + V+EEALAFVG ++  + ++SPD+LY S  +P G N + P+G   N +I+
Sbjct: 129 RLAEHHGKNYGVLEEALAFVGSIKSNSHYVSPDHLYDSSRNPDGAN-SIPDGIESNFVIN 187

Query: 191 ALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHP-QKQDERVYSNRA 249
           A  S+F FAK+ L  + V G+L NAAI A+S++A+LHLHQ A  EH  QK+++R Y ++ 
Sbjct: 188 AFASTFGFAKRALGFNHVKGVLGNAAIFAISVVAMLHLHQVATSEHHLQKKEDRFYRSQQ 247

Query: 250 VRKTTQLESSSPNTQLNQLDVMSARG 275
            RKT   + SS +  L+ LDVM ARG
Sbjct: 248 -RKTYGRDKSSADRSLDHLDVMMARG 272

Component of the plastid division machinery. Required to mediate the recruitment of ARC5 at the midplastid constriction site in the cytoplasm.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224116822	276	predicted protein [Populus trichocarpa]	0.981	0.978	0.682	1e-100
255545068	269	conserved hypothetical protein [Ricinus	0.978	1.0	0.690	1e-100
118485788	286	unknown [Populus trichocarpa]	0.992	0.954	0.663	1e-96
224120600	286	predicted protein [Populus trichocarpa]	0.992	0.954	0.666	2e-96
225462701	277	PREDICTED: plastid division protein PDV1	0.989	0.981	0.692	2e-93
302143697	273	unnamed protein product [Vitis vinifera]	0.927	0.934	0.680	1e-92
356551456	275	PREDICTED: plastid division protein PDV1	0.992	0.992	0.599	2e-86
356551152	284	PREDICTED: plastid division protein PDV1	0.996	0.964	0.585	9e-85
449463466	278	PREDICTED: plastid division protein PDV1	0.989	0.978	0.594	2e-82
21592900	269	unknown [Arabidopsis thaliana]	0.970	0.992	0.578	3e-81

>gi|224116822|ref|XP_002331822.1| predicted protein [Populus trichocarpa] gi|222875060|gb|EEF12191.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/277 (68%), Positives = 225/277 (81%), Gaps = 7/277 (2%)

Query: 5   MEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDK--NKLYNDVVEDNR-- 60
           ME++EIEAVLEKIWDLHDKLSDAIHSISR+HFL+SIK+LK  +K  N   +   E+N   
Sbjct: 1   MEVEEIEAVLEKIWDLHDKLSDAIHSISRSHFLSSIKSLKTNNKKLNSESDVGFEENNNS 60

Query: 61  --AGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAI 118
             +GFVFVK F V DN+  SAIQEAKSLN+IRTALENLEDQLE  HTVQ +QRAE+DAAI
Sbjct: 61  RASGFVFVKDFGVHDND-LSAIQEAKSLNSIRTALENLEDQLEFFHTVQIHQRAERDAAI 119

Query: 119 ARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFA 178
           ARLEQSRI+LA+RL+EHHGKK+KVIEEALAFVGDV DA+RF+S +NLYGSP SPSG+N  
Sbjct: 120 ARLEQSRIILAVRLAEHHGKKYKVIEEALAFVGDVNDASRFVSRENLYGSPTSPSGENLV 179

Query: 179 APEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQ 238
             EG+  N +I  L+SSF+FAKK+LKLD +GGIL NAA+  VSMIA+LHLHQ AYK+HP 
Sbjct: 180 RHEGKGPNTVIKVLLSSFEFAKKSLKLDLMGGILGNAALFTVSMIAMLHLHQVAYKDHPN 239

Query: 239 KQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
           KQ++ +YSNR  +K + LE SS N  LN LDV+ ARG
Sbjct: 240 KQEDLLYSNRNGKKVSGLEGSSSNGSLNHLDVLLARG 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545068|ref|XP_002513595.1| conserved hypothetical protein [Ricinus communis] gi|223547503|gb|EEF48998.1| conserved hypothetical protein [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 216/271 (79%), Gaps = 2/271 (0%)

Query: 5   MEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFV 64
           ME++EIEAVLEKIWDLHDKLSD IHSISR HFLNSIK LK++DK K YND VEDNR GFV
Sbjct: 1   MEMEEIEAVLEKIWDLHDKLSDTIHSISRIHFLNSIKTLKQSDKKKPYNDAVEDNRPGFV 60

Query: 65  FVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQS 124
           F K FRVDDN+SA  IQEAKSLN+IRTALENLEDQLE  HTVQ  QRAE+DAAIARLEQS
Sbjct: 61  FFKDFRVDDNDSA--IQEAKSLNSIRTALENLEDQLEFFHTVQIQQRAERDAAIARLEQS 118

Query: 125 RIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRM 184
           R+VLAMRLSEHHGKK+KVIEEAL+FVGDV DA  F+SP+NLY S  + SG+N    E + 
Sbjct: 119 RVVLAMRLSEHHGKKYKVIEEALSFVGDVHDANLFVSPENLYASSHNVSGENLVRREEKG 178

Query: 185 CNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERV 244
            + +I  LISSF+F KK+ +L+ VGG+L NAA+ AVSMIA LHL Q A+KE P   +E +
Sbjct: 179 SSIMIKVLISSFEFVKKSFQLNGVGGLLGNAALFAVSMIAFLHLQQGAHKELPYNHEEVI 238

Query: 245 YSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
           YSNR VRK ++ E S   + LN LDVM ARG
Sbjct: 239 YSNRNVRKASREEESPFISDLNHLDVMLARG 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485788|gb|ABK94742.1| unknown [Populus trichocarpa]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/288 (66%), Positives = 222/288 (77%), Gaps = 15/288 (5%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLY-----NDV 55
           MKW+ME++EIEAVLEKIWDLHDKLSDAIHSISR+HFL+SIK+LK             NDV
Sbjct: 1   MKWDMELEEIEAVLEKIWDLHDKLSDAIHSISRSHFLHSIKSLKTNTTTTNKKLNNENDV 60

Query: 56  -VEDNR-------AGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQ 107
             EDN        +GFVF K FRVD N+  S IQEAKSLN+IRTALENLEDQLE  HTVQ
Sbjct: 61  GFEDNNSNSNNRASGFVFFKDFRVDGND-LSTIQEAKSLNSIRTALENLEDQLEFFHTVQ 119

Query: 108 TNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYG 167
            +QRAE DAAIARLEQSRI+LAMRL+EHHGKK+KVIEEALAFVGDV DA+ F+SP+NLYG
Sbjct: 120 IHQRAEIDAAIARLEQSRIILAMRLAEHHGKKYKVIEEALAFVGDVHDASHFVSPENLYG 179

Query: 168 SPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLH 227
           SP SP G+N    EG+  N +I+ L+SSF+FAKK+LKLD VGG+L NAA+  VSMIA+LH
Sbjct: 180 SPTSPLGENLIRREGKRPNTVINVLLSSFEFAKKSLKLDHVGGLLGNAALFTVSMIAMLH 239

Query: 228 LHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
           LHQ A+  HP KQ E +YS+R  +K   LE SS N  L+ LDVM ARG
Sbjct: 240 LHQVAHNHHPYKQ-EDLYSDRNGKKAFGLEGSSSNGSLDHLDVMLARG 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120600|ref|XP_002318370.1| predicted protein [Populus trichocarpa] gi|222859043|gb|EEE96590.1| predicted protein [Populus trichocarpa]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/288 (66%), Positives = 222/288 (77%), Gaps = 15/288 (5%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLY-----NDV 55
           MKW+ME++EIEAVLEKIWDLHDKLSDAIHSISR+HFL+SIK+LK T           NDV
Sbjct: 1   MKWDMELEEIEAVLEKIWDLHDKLSDAIHSISRSHFLHSIKSLKTTTTTTNKKLNNENDV 60

Query: 56  -VEDNR-------AGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQ 107
             EDN        +GFVF K FRVD N+  S IQEAKSLN+IRTALENLEDQLE  HTVQ
Sbjct: 61  GFEDNNSNSNNRASGFVFFKDFRVDGND-LSTIQEAKSLNSIRTALENLEDQLEFFHTVQ 119

Query: 108 TNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYG 167
            +QRAE DAAIARLEQSRI+LAMRL+EHHGKK+KVIEEALAFVGDV DA+ F+SP+NLYG
Sbjct: 120 IHQRAEIDAAIARLEQSRIILAMRLAEHHGKKYKVIEEALAFVGDVHDASHFVSPENLYG 179

Query: 168 SPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLH 227
           SP SP G+N    EG+  N +I  L+SSF+FAKK+LKLD VGG+L NAA+  VSMIA+LH
Sbjct: 180 SPTSPLGENLIRREGKRPNTVIKVLLSSFEFAKKSLKLDHVGGLLGNAALFTVSMIAMLH 239

Query: 228 LHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
           LHQ A+  HP KQ E +YS+R  +K   LE SS N  L+ LDVM ARG
Sbjct: 240 LHQVAHNHHPYKQ-EDLYSDRNGKKAFGLEGSSSNGSLDHLDVMLARG 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462701|ref|XP_002266963.1| PREDICTED: plastid division protein PDV1-like [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/280 (69%), Positives = 236/280 (84%), Gaps = 8/280 (2%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNR 60
           MKWEMEI+EIEA+LEKIWDLHDKLSDAIHSISR HFLNSIK+L+K+DK+K  NDV ++NR
Sbjct: 1   MKWEMEIEEIEAILEKIWDLHDKLSDAIHSISRFHFLNSIKSLRKSDKSKPLNDV-DENR 59

Query: 61  AGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIAR 120
            GFV+ K FRV+D++ A  IQEAKSLNAIRTALENLEDQLE  HTVQ +Q+AE+DAAIAR
Sbjct: 60  FGFVYAKDFRVEDDDLA--IQEAKSLNAIRTALENLEDQLEFFHTVQVHQQAERDAAIAR 117

Query: 121 LEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAP 180
           LEQSRIVLA+RLSEHHGKK+KVIEEA+AFVGDV+DA  F+ PDNL+G PVSP G+N A  
Sbjct: 118 LEQSRIVLAIRLSEHHGKKYKVIEEAMAFVGDVRDAGPFVLPDNLFGPPVSPPGKNVAPH 177

Query: 181 EGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYK-----E 235
           E +  N LI  LIS F+F KK+LKLD +GGIL NAA+VAVSM+ALLHL+Q  YK     E
Sbjct: 178 EEKRSNFLIKVLISCFNFGKKSLKLDHMGGILGNAALVAVSMLALLHLNQVTYKDKIVLE 237

Query: 236 HPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
            PQK+++ +Y NR V++T+++ESSS +++LNQLDV+ ARG
Sbjct: 238 PPQKREDNIYRNRNVKRTSRVESSSLSSELNQLDVLYARG 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143697|emb|CBI22558.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/263 (68%), Positives = 219/263 (83%), Gaps = 8/263 (3%)

Query: 18  WDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESA 77
           WDLHDKLSDAIHSISR HFLNSIK+L+K+DK+K  NDV ++NR GFV+ K FRV+D++ A
Sbjct: 14  WDLHDKLSDAIHSISRFHFLNSIKSLRKSDKSKPLNDV-DENRFGFVYAKDFRVEDDDLA 72

Query: 78  SAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHG 137
             IQEAKSLNAIRTALENLEDQLE  HTVQ +Q+AE+DAAIARLEQSRIVLA+RLSEHHG
Sbjct: 73  --IQEAKSLNAIRTALENLEDQLEFFHTVQVHQQAERDAAIARLEQSRIVLAIRLSEHHG 130

Query: 138 KKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSFD 197
           KK+KVIEEA+AFVGDV+DA  F+ PDNL+G PVSP G+N A  E +  N LI  LIS F+
Sbjct: 131 KKYKVIEEAMAFVGDVRDAGPFVLPDNLFGPPVSPPGKNVAPHEEKRSNFLIKVLISCFN 190

Query: 198 FAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYK-----EHPQKQDERVYSNRAVRK 252
           F KK+LKLD +GGIL NAA+VAVSM+ALLHL+Q  YK     E PQK+++ +Y NR V++
Sbjct: 191 FGKKSLKLDHMGGILGNAALVAVSMLALLHLNQVTYKDKIVLEPPQKREDNIYRNRNVKR 250

Query: 253 TTQLESSSPNTQLNQLDVMSARG 275
           T+++ESSS +++LNQLDV+ ARG
Sbjct: 251 TSRVESSSLSSELNQLDVLYARG 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551456|ref|XP_003544091.1| PREDICTED: plastid division protein PDV1-like [Glycine max]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/277 (59%), Positives = 207/277 (74%), Gaps = 4/277 (1%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNR 60
           MKW+M+++EIEA++EKIWDLHDKLSDAIHSISR+HFL S+K LK      L N   +D  
Sbjct: 1   MKWDMQMEEIEAIMEKIWDLHDKLSDAIHSISRSHFLTSVKILKNNSPPHLPNAAADDRS 60

Query: 61  AGFVFVKGFRVDDNESA--SAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAI 118
           +GFVFVK FR  DN+S   SA++EAKSLNAIR+ALENLEDQLE  HT+QT Q  E+DAAI
Sbjct: 61  SGFVFVKDFRPADNDSDGDSAVREAKSLNAIRSALENLEDQLEFFHTIQTQQCVERDAAI 120

Query: 119 ARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFA 178
           ARLEQSRIVLA+RL+EH GKK+KVIEEALAF+GDV+DA   ++PD  YG P + S +N A
Sbjct: 121 ARLEQSRIVLAVRLAEHRGKKYKVIEEALAFIGDVRDAGSLVAPDIFYGQP-NCSAENIA 179

Query: 179 APEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQ 238
             + +  N LI+  ISSF+F K++L LD +GGI+ NAA+VAVSMIALLHLHQ    E P 
Sbjct: 180 TEKAKRSNILINIFISSFNFVKRSLGLDHMGGIVGNAALVAVSMIALLHLHQVTNHEQPF 239

Query: 239 KQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
            Q+  V+ N  +R+ T+L  SS     + LDV+ ARG
Sbjct: 240 GQENTVHRNSTMRR-TRLVGSSSEAHSSNLDVLLARG 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551152|ref|XP_003543942.1| PREDICTED: plastid division protein PDV1-like [Glycine max]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 167/285 (58%), Positives = 208/285 (72%), Gaps = 11/285 (3%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNK-LYNDVV--- 56
           MKW+M+++EIEA++EKIWDLHDKLSDAIHS+SR+HFL S+K LK  +    L N  V   
Sbjct: 1   MKWDMQMEEIEAIMEKIWDLHDKLSDAIHSVSRSHFLTSVKTLKLNNSPPHLPNAAVAAA 60

Query: 57  EDNRAGFVFVKGFR------VDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQ 110
           +D  +GFVFVK FR       D+++  SA++EAKSLNAIRTALENLEDQLE  HT+QT Q
Sbjct: 61  DDRSSGFVFVKDFRPLAVADNDNDDDDSAVREAKSLNAIRTALENLEDQLEFFHTIQTQQ 120

Query: 111 RAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPV 170
           R E+DAAIARLEQSRIVLAMRL+EH GKK+KVIEEALAF+GDV DA   ++PD  YG P 
Sbjct: 121 RVERDAAIARLEQSRIVLAMRLAEHRGKKYKVIEEALAFIGDVHDAGSLVAPDVFYGQPN 180

Query: 171 SPSGQNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQ 230
             S +N A  + +  N LI+  +SSF+F K++L LD +GGI+ NAA+VAVSMIALLHLHQ
Sbjct: 181 CCSAENLATEKVKRSNILINIFVSSFNFVKRSLGLDHMGGIVGNAALVAVSMIALLHLHQ 240

Query: 231 AAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
               E P  Q+  V+ N  VR+ T+L  SS     + LDV+ ARG
Sbjct: 241 VTNHEQPFGQENTVHRNSTVRR-TRLVGSSSEAHSSNLDVLLARG 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463466|ref|XP_004149455.1| PREDICTED: plastid division protein PDV1-like [Cucumis sativus]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 167/281 (59%), Positives = 207/281 (73%), Gaps = 9/281 (3%)

Query: 1   MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLY------ND 54
           MKW+MEI+EIEAVLEKIWDLHDKLS+AIHSISR HFL S K L+K+D N           
Sbjct: 1   MKWDMEIEEIEAVLEKIWDLHDKLSEAIHSISRDHFLASTKHLRKSDNNNNNNKDSNNTP 60

Query: 55  VVEDNRAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEK 114
           +   + A F F+  FRVD ++SA  IQEA+SLNAIRTALENLEDQLE  HTVQ  Q+ E+
Sbjct: 61  IPLPHTALFPFIHEFRVDLDDSA--IQEARSLNAIRTALENLEDQLEFFHTVQVQQQVER 118

Query: 115 DAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSG 174
           DAAIARLEQSRI+LAMRL+EHHGK +KVI EALAFVGDV+ AA ++S +N  G   SP+G
Sbjct: 119 DAAIARLEQSRILLAMRLAEHHGKNYKVISEALAFVGDVRYAANYVSQENKDGPKFSPNG 178

Query: 175 QNFAAPEGRMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYK 234
           Q       +  N LI  L S+ DFA+K+LK+D VGGIL NAA+VA+SM+A LHLHQ AYK
Sbjct: 179 QKPLPNSSKRSNTLIKMLFSTLDFARKSLKMDHVGGILGNAAMVAISMVAFLHLHQVAYK 238

Query: 235 EHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
             P ++D+  + NR +R+T++L+ SS N   +  DV+SARG
Sbjct: 239 AAPLERDDIPF-NRNLRRTSRLKESSSNEDFSNFDVLSARG 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592900|gb|AAM64850.1| unknown [Arabidopsis thaliana]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 158/273 (57%), Positives = 202/273 (73%), Gaps = 6/273 (2%)

Query: 5   MEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNK-LYNDVVEDNRAGF 63
           MEI+EIEAVLEKIWDLHDKLSD IH IS++HFL S+K   +++K K  + +  ED R G+
Sbjct: 1   MEIEEIEAVLEKIWDLHDKLSDEIHLISKSHFLKSVKPSNRSEKRKNPHGNSGEDKRPGY 60

Query: 64  VFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQ 123
           VF+KGF VDDN+S   IQEAKSLNAIRTALENLEDQLE  HT+ T QR EKD AIARLEQ
Sbjct: 61  VFIKGFAVDDNDST--IQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQ 118

Query: 124 SRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGR 183
           SRI+LAMRL+EHHGK + V+EEALAFVG ++  + ++SPD+LY S  +P G N + P G 
Sbjct: 119 SRILLAMRLAEHHGKNYGVLEEALAFVGSIKSTSHYVSPDHLYDSSRNPDGAN-STPYGI 177

Query: 184 MCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHP-QKQDE 242
             N +I++  S+F FAK+ L  + V G+L NAAI  +S++A+LHLHQ A  EH  QK+++
Sbjct: 178 KSNFVINSFASTFGFAKRALGFNHVKGVLGNAAIFTISVVAMLHLHQVATSEHHLQKKED 237

Query: 243 RVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
           R Y ++  RKT   + SS +  L+ LDVM ARG
Sbjct: 238 RFYRSQQ-RKTYGRDKSSGDRSLDHLDVMMARG 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2154262	272	PDV1 "AT5G53280" [Arabidopsis	0.974	0.985	0.587	7.9e-78
TAIR|locus:2052996	307	PDV2 "AT2G16070" [Arabidopsis	0.516	0.462	0.305	9.4e-07

TAIR|locus:2154262 PDV1 "AT5G53280" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 161/274 (58%), Positives = 205/274 (74%)

Query:     4 EMEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKL-YNDVVEDNRAG 62
             EMEI+EIEAVLEKIWDLHDKLSD IH IS++HFL S+K   +++K K  + +  ED R G
Sbjct:     3 EMEIEEIEAVLEKIWDLHDKLSDEIHLISKSHFLKSVKPSNRSEKRKNPHGNSGEDKRPG 62

Query:    63 FVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLE 122
             +VF+KGF VDDN+S   IQEAKSLNAIRTALENLEDQLE  HT+ T QR EKD AIARLE
Sbjct:    63 YVFIKGFAVDDNDST--IQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLE 120

Query:   123 QSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEG 182
             QSRI+LAMRL+EHHGK + V+EEALAFVG ++  + ++SPD+LY S  +P G N + P+G
Sbjct:   121 QSRILLAMRLAEHHGKNYGVLEEALAFVGSIKSNSHYVSPDHLYDSSRNPDGAN-SIPDG 179

Query:   183 RMCNGLIHALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHP-QKQD 241
                N +I+A  S+F FAK+ L  + V G+L NAAI A+S++A+LHLHQ A  EH  QK++
Sbjct:   180 IESNFVINAFASTFGFAKRALGFNHVKGVLGNAAIFAISVVAMLHLHQVATSEHHLQKKE 239

Query:   242 ERVYSNRAVRKTTQLESSSPNTQLNQLDVMSARG 275
             +R Y ++  RKT   + SS +  L+ LDVM ARG
Sbjct:   240 DRFYRSQQ-RKTYGRDKSSADRSLDHLDVMMARG 272

GO:0003674 "molecular_function" evidence=ND

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IMP

TAIR|locus:2052996 PDV2 "AT2G16070" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 47/154 (30%), Positives = 76/154 (49%)

Query:     5 MEIDE-IEAVLEKIWDLHDKLSDAIHSISRTHFLNSI--KALKKTDKNKLYNDVVEDNRA 61
             ME +E I  +L +  +L  K+SD I + S T   N    + L   +  K  ++++ +   
Sbjct:     1 MEDEEGIGLILARATELRLKISDCIDNSSTTVSDNGDGNEDLSPGEGRK--SEIIGNQDK 58

Query:    62 GFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARL 121
              F  +    VD+        EA+ L  IR ALE LE QL  L  ++  Q+ EK  A++ +
Sbjct:    59 DFDSISSEDVDE-------AEAERLLRIRDALEALESQLASLQNLRQRQQYEKQLALSEI 111

Query:   122 EQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQD 155
             + SR +L  +L E+ GK  +V+ E   F G+  D
Sbjct:   112 DYSRKMLLEKLKEYKGKDFEVLRETTTFAGERVD 145


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       275   0.00079  115 3  11 22  0.38    34
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.16u 0.12s 25.28t   Elapsed:  00:00:01
  Total cpu time:  25.16u 0.12s 25.28t   Elapsed:  00:00:01
  Start:  Sat May 11 04:40:28 2013   End:  Sat May 11 04:40:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0043572 "plastid fission" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK13	PDV1_ARATH	No assigned EC number	0.5789	0.9454	0.9558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0197000801 hypothetical protein (276 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 56/361 (15%), Positives = 98/361 (27%), Gaps = 140/361 (38%)

Query: 6   EIDEI-------EAVLEKIWDLHDK-------------------LSDAIHSISRTHFLNS 39
           EID I          L   W L  K                   L   I +  R   + +
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 40  IKALKKTDKNKLYNDVVEDNRAGFVFVKGFRVDDNESASAIQEAKSLNAIRTALENLEDQ 99
              +++  +++LYND         VF K            +   +    +R AL  L   
Sbjct: 110 RMYIEQ--RDRLYNDNQ-------VFAKYN----------VSRLQPYLKLRQALLELRPA 150

Query: 100 -----------------LEVL--HTVQTN-----------QRAEKDAAIARLE------- 122
                            L+V   + VQ                  +  +  L+       
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 123 -----QSRIVLAMRLSEHHGK-------KHKVIEEALAFVGDVQDA-------------- 156
                +S     ++L  H  +       K K  E  L  + +VQ+A              
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 157 -------ARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIHALISSF-DFAKKTLKLDQV 208
                    F+S        +          E +       +L+  + D   + L  + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------SLLLKYLDCRPQDLPREVL 323

Query: 209 GGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDERVYSNRAVRKTTQLESSSPNTQLNQL 268
                      +S+IA       + ++     D   + N   + TT +ESS     LN L
Sbjct: 324 TTNP-----RRLSIIA------ESIRDGLATWDNWKHVNCD-KLTTIIESS-----LNVL 366

Query: 269 D 269
           +
Sbjct: 367 E 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 46/287 (16%), Positives = 92/287 (32%), Gaps = 73/287 (25%)

Query: 1   MKWEMEIDEIEAVLEKIWD-----LHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDV 55
           +  E   D +       WD       DKL+  I S        S+  L+  +  K+++ +
Sbjct: 332 IIAESIRDGLA-----TWDNWKHVNCDKLTTIIES--------SLNVLEPAEYRKMFDRL 378

Query: 56  VEDNRAGFVFVKGFRV---------DDNESASAIQEAKSLNAIRTALENLEDQLEVLHTV 106
                   VF     +          D   +  +     L+      +  ++    + ++
Sbjct: 379 -------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 107 Q--TNQRAEKDAAIAR--LEQSRIVLAMRLSE---------------HHGKKHKVIEEAL 147
                 + E + A+ R  ++   I       +               HH K  +  E   
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 148 AFVGDVQDAARFI--------SPDNLYGSPVSPSGQNFAAPEGRMC--NGLIHALISSF- 196
            F     D  RF+        +  N  GS +  + Q     +  +C  +     L+++  
Sbjct: 492 LFRMVFLD-FRFLEQKIRHDSTAWNASGS-ILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 197 DFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHPQKQDER 243
           DF      L ++   L  +    +  IAL+   +A ++E   KQ +R
Sbjct: 550 DF------LPKIEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00