Citrus Sinensis ID: 023960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNCLSNGDLKWLKDGVNGTETSKKRSNSRKRKSRS
cccccccccccccEEEEEEEcccEEEEEEccccEEccEEEEEEEcccccccccccEEEEEcHHHHHHHHHHHccccccccEEEccEEEEEEEEcccccccEEEEEEEEccccccccccccEEEEEEccccccHHcccccccccEEEEEccccccEEEEEEEEEcccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccc
cccEEcHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccEEEEEEEEccccccccHHHHcccccEEEEEccccccEEEEEEEEEccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccHEEEEccccccccHEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccc
mgiisnaitnccfPVIYIFCKAIDFHIFLFNAILVTLFAVLCCvsqktpkdkkasLVIHGFVDKVVAGVMDLlnlrippyiriDLLQIIVTQSLSSDKKFVNWTLRITSVhgqtaqlpfiksvEVSFSDRQkykeasldkqpfqlkrrtVINETFDIKLKlnfsdgcgcpctqinipfdfkvppkcfeldkdDIFQRLRETAFqdlgcgqnevierkvlsspkseVTVYAIVSNVKtfesnclsngdlkwlkdgvngtetskkrsnsrkrksrs
MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQktpkdkkaslvIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITsvhgqtaqlpfiKSVEVSFSDRQKYkeasldkqpfqlkrrtVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAfqdlgcgqnevierkvlsspkseVTVYAIVSNvktfesnclsngdlkwlkdgvngtetskkrsnsrkrksrs
MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNCLSNGDLKWLKDGVNGTETskkrsnsrkrksrs
**IISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFS*************PFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNCLSNGDLKWLKD*********************
****SNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQII***************LRITSVHGQTAQLPFIKSVEV*****************F**********TFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQ**************************KSEVTVYAIVSNVKTFESNCL*******************************
MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNCLSNGDLKWLKDGVN******************
*GIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNC********************************
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFESNCLSNGDLKWLKDGVNGTETSKKRSNSRKRKSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9FE17473 NAD-dependent protein dea yes no 0.824 0.477 0.587 3e-77
B8ARK7484 NAD-dependent protein dea N/A no 0.700 0.396 0.479 1e-41
>sp|Q9FE17|SIR1_ARATH NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  288 bits (737), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 184/233 (78%), Gaps = 7/233 (3%)

Query: 46  QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTL 105
           QKTPKDKKA++VIHG VDKVVAGVM+ LN++IPPY+RIDL QII+TQS+S D++F+NWTL
Sbjct: 237 QKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPPYVRIDLFQIILTQSISGDQRFINWTL 296

Query: 106 RITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSD 165
           R+ SVHG T+QLPFIKS+EVSFSD   YK+A LDKQPF +KRRT  NETFDI  K+N+SD
Sbjct: 297 RVASVHGLTSQLPFIKSIEVSFSDNHNYKDAVLDKQPFLMKRRTARNETFDIFFKVNYSD 356

Query: 166 GCGCPCTQINIPFDFKVPPKCFE--LDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPK 223
           GC C  TQ+++PF+FK+  +     +DK+ + Q LRE A ++  CGQ+ V+ER+V+S P+
Sbjct: 357 GCDCVSTQLSLPFEFKISTEEHVEIIDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPR 416

Query: 224 SEVTVYAIVSNVKTFES--NCLSNGDLKWLKDGVNGTETSKKRSNSRKRKSRS 274
           SE  VYA V++++T+ S  + L+NGDLKW    + G+ TS+KRS + KRKS++
Sbjct: 417 SEAVVYATVTSLRTYHSQQSLLANGDLKW---KLEGSGTSRKRSRTGKRKSKA 466
NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|B8ARK7|SIR1_ORYSI NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica GN=SRT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
255563480 466 chromatin regulatory protein sir2, putat 0.832 0.489 0.707 3e-88
224056465 464 histone deacetylase [Populus trichocarpa 0.828 0.489 0.662 9e-83
225461927 467 PREDICTED: NAD-dependent deacetylase sir 0.835 0.490 0.649 5e-78
359466799 467 sirtuin 1 [Vitis vinifera] 0.835 0.490 0.645 6e-78
356524368 574 PREDICTED: NAD-dependent deacetylase sir 0.828 0.395 0.609 3e-77
31711700 473 At5g55760 [Arabidopsis thaliana] gi|1107 0.824 0.477 0.587 2e-75
15240574 473 sirtuin 1 [Arabidopsis thaliana] gi|7526 0.824 0.477 0.587 2e-75
297793049 473 hypothetical protein ARALYDRAFT_495661 [ 0.824 0.477 0.587 4e-75
297790063 473 hypothetical protein ARALYDRAFT_497237 [ 0.824 0.477 0.587 1e-74
356566429 479 PREDICTED: NAD-dependent deacetylase sir 0.777 0.444 0.625 2e-74
>gi|255563480|ref|XP_002522742.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223537980|gb|EEF39593.1| chromatin regulatory protein sir2, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 189/229 (82%), Gaps = 1/229 (0%)

Query: 46  QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTL 105
           QKTPKDKKASLVIHGFVDKV+AGVM LL+++IPPY+RIDLLQIIVT+SLS+DK+FVNWTL
Sbjct: 237 QKTPKDKKASLVIHGFVDKVIAGVMHLLSMQIPPYVRIDLLQIIVTRSLSADKRFVNWTL 296

Query: 106 RITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSD 165
           RI SVH   A LPFIKS+EV+FSD QKYK A L +QPF LKRRTV  E+F+I LKLN SD
Sbjct: 297 RIASVHALKATLPFIKSIEVTFSDTQKYKAAILHEQPFNLKRRTVTTESFEIFLKLNLSD 356

Query: 166 GCGCPCTQINIPFDFKVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSE 225
           GCGC CTQINIPF FKV   CF L KD + Q LRE A Q LGCGQN +IERK + +P+SE
Sbjct: 357 GCGCLCTQINIPFGFKVLNDCFNLKKDSVIQNLREKAIQVLGCGQNAMIERKTIIAPRSE 416

Query: 226 VTVYAIVSNVKTFESNCLSNGDLKWLK-DGVNGTETSKKRSNSRKRKSR 273
           VTV+AIV+N+K FES+ LSNG++K L+   +NG  T +KRSNSRKRKSR
Sbjct: 417 VTVHAIVTNIKAFESDGLSNGEVKRLRGSSINGIMTCRKRSNSRKRKSR 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056465|ref|XP_002298870.1| histone deacetylase [Populus trichocarpa] gi|222846128|gb|EEE83675.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461927|ref|XP_002265837.1| PREDICTED: NAD-dependent deacetylase sirtuin-6 [Vitis vinifera] gi|296089923|emb|CBI39742.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359466799|gb|AEV46830.1| sirtuin 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356524368|ref|XP_003530801.1| PREDICTED: NAD-dependent deacetylase sirtuin-7-like [Glycine max] Back     alignment and taxonomy information
>gi|31711700|gb|AAP68206.1| At5g55760 [Arabidopsis thaliana] gi|110743087|dbj|BAE99436.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15240574|ref|NP_200387.1| sirtuin 1 [Arabidopsis thaliana] gi|75262309|sp|Q9FE17.1|SIR1_ARATH RecName: Full=NAD-dependent protein deacetylase SRT1; AltName: Full=Regulatory protein SIR2 homolog 1; AltName: Full=SIR2-like protein 1 gi|12006420|gb|AAG44850.1|AF283757_1 sir2-like protein [Arabidopsis thaliana] gi|9758610|dbj|BAB09243.1| transcription regulator Sir2-like protein [Arabidopsis thaliana] gi|332009294|gb|AED96677.1| sirtuin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793049|ref|XP_002864409.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata] gi|297310244|gb|EFH40668.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297790063|ref|XP_002862943.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata] gi|297308724|gb|EFH39202.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356566429|ref|XP_003551434.1| PREDICTED: NAD-dependent deacetylase sirtuin-6-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2162112473 SRT1 "AT5G55760" [Arabidopsis 0.773 0.448 0.603 1.3e-68
TAIR|locus:2162112 SRT1 "AT5G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 131/217 (60%), Positives = 174/217 (80%)

Query:    46 QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTL 105
             QKTPKDKKA++VIHG VDKVVAGVM+ LN++IPPY+RIDL QII+TQS+S D++F+NWTL
Sbjct:   237 QKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPPYVRIDLFQIILTQSISGDQRFINWTL 296

Query:   106 RITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSD 165
             R+ SVHG T+QLPFIKS+EVSFSD   YK+A LDKQPF +KRRT  NETFDI  K+N+SD
Sbjct:   297 RVASVHGLTSQLPFIKSIEVSFSDNHNYKDAVLDKQPFLMKRRTARNETFDIFFKVNYSD 356

Query:   166 GCGCPCTQINIPFDFKVPPK-CFEL-DKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPK 223
             GC C  TQ+++PF+FK+  +   E+ DK+ + Q LRE A ++  CGQ+ V+ER+V+S P+
Sbjct:   357 GCDCVSTQLSLPFEFKISTEEHVEIIDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPR 416

Query:   224 SEVTVYAIVSNVKTFES--NCLSNGDLKWLKDGVNGT 258
             SE  VYA V++++T+ S  + L+NGDLKW  +G +GT
Sbjct:   417 SEAVVYATVTSLRTYHSQQSLLANGDLKWKLEG-SGT 452


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       260   0.00089  114 3  11 22  0.40    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.62u 0.10s 20.72t   Elapsed:  00:00:01
  Total cpu time:  20.62u 0.10s 20.72t   Elapsed:  00:00:01
  Start:  Sat May 11 04:46:59 2013   End:  Sat May 11 04:47:00 2013
GO:0003677 "DNA binding" evidence=ISS
GO:0005677 "chromatin silencing complex" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006342 "chromatin silencing" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0006476 "protein deacetylation" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0070403 "NAD+ binding" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SRT902
histone deacetylase (464 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
KOG1905353 consensus Class IV sirtuins (SIR2 family) [Chromat 99.8
PRK14138244 NAD-dependent deacetylase; Provisional 99.39
cd01408235 SIRT1 SIRT1: Eukaryotic group (class1) which inclu 99.2
cd01409260 SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla 99.18
PTZ00408242 NAD-dependent deacetylase; Provisional 99.14
PTZ00409271 Sir2 (Silent Information Regulator) protein; Provi 99.07
PRK05333285 NAD-dependent deacetylase; Provisional 99.07
PRK00481242 NAD-dependent deacetylase; Provisional 99.03
cd01412224 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea 98.98
cd01413222 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group 98.97
cd01410206 SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla 98.95
COG0846250 SIR2 NAD-dependent protein deacetylases, SIR2 fami 98.91
cd01411225 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo 98.75
cd01407218 SIR2-fam SIR2 family of proteins includes silent i 98.64
cd00296222 SIR2 SIR2 superfamily of proteins includes silent 98.26
PTZ00410349 NAD-dependent SIR2; Provisional 98.02
PF0336684 YEATS: YEATS family; InterPro: IPR005033 Named the 97.93
KOG2683305 consensus Sirtuin 4 and related class II sirtuins 97.79
KOG2682314 consensus NAD-dependent histone deacetylases and c 97.75
KOG2684412 consensus Sirtuin 5 and related class III sirtuins 97.21
PF00205137 TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr 95.99
PRK08322547 acetolactate synthase; Reviewed 94.72
PRK06546578 pyruvate dehydrogenase; Provisional 94.41
PRK08979572 acetolactate synthase 3 catalytic subunit; Validat 94.39
PRK08611576 pyruvate oxidase; Provisional 94.24
PRK07979574 acetolactate synthase 3 catalytic subunit; Validat 94.19
TIGR01504588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 94.09
PRK05858542 hypothetical protein; Provisional 94.05
COG0028550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 94.03
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 94.02
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 94.0
PRK07524535 hypothetical protein; Provisional 93.78
PRK06154565 hypothetical protein; Provisional 93.72
PRK08327569 acetolactate synthase catalytic subunit; Validated 93.67
CHL00099585 ilvB acetohydroxyacid synthase large subunit 93.67
PRK06456572 acetolactate synthase catalytic subunit; Reviewed 93.65
PRK07418616 acetolactate synthase 3 catalytic subunit; Reviewe 93.55
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 93.52
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 93.51
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 93.5
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 93.49
PLN02470585 acetolactate synthase 93.49
PRK08273597 thiamine pyrophosphate protein; Provisional 93.49
PRK06725570 acetolactate synthase 3 catalytic subunit; Validat 93.46
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 93.3
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 93.08
PRK08617552 acetolactate synthase; Reviewed 93.06
PRK07525588 sulfoacetaldehyde acetyltransferase; Validated 92.82
PRK07282566 acetolactate synthase catalytic subunit; Reviewed 92.77
PRK08155564 acetolactate synthase catalytic subunit; Validated 92.75
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 92.73
PRK08266542 hypothetical protein; Provisional 92.71
PRK11269591 glyoxylate carboligase; Provisional 92.64
PRK09124574 pyruvate dehydrogenase; Provisional 92.56
PRK07064544 hypothetical protein; Provisional 92.53
PRK08199557 thiamine pyrophosphate protein; Validated 92.48
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 92.47
TIGR03457579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 92.42
PRK06112578 acetolactate synthase catalytic subunit; Validated 92.25
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 92.25
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 92.23
TIGR02720575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 92.21
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 91.92
TIGR00173432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 91.52
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 90.79
KOG3149249 consensus Transcription initiation factor IIF, aux 88.93
PRK06457549 pyruvate dehydrogenase; Provisional 88.39
PLN02573578 pyruvate decarboxylase 87.12
PRK07092530 benzoylformate decarboxylase; Reviewed 86.87
TIGR03393539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 86.7
PLN00022356 electron transfer flavoprotein subunit alpha; Prov 86.39
PRK11916312 electron transfer flavoprotein subunit YdiR; Provi 85.82
PRK03363313 fixB putative electron transfer flavoprotein FixB; 85.68
COG5033225 TFG3 Transcription initiation factor IIF, auxiliar 85.65
PRK07449568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 84.01
KOG1185571 consensus Thiamine pyrophosphate-requiring enzyme 82.07
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=99.80  E-value=1.1e-19  Score=170.69  Aligned_cols=128  Identities=30%  Similarity=0.344  Sum_probs=112.6

Q ss_pred             HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcc
Q 023960           14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI   81 (274)
Q Consensus        14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~   81 (274)
                      ..|.+++++||++|||||||+|.|.            ++++||+|+|+.|..|+++|||++|+||..||+.||++||.|+
T Consensus       208 ~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~  287 (353)
T KOG1905|consen  208 DRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYD  287 (353)
T ss_pred             HHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCccc
Confidence            4688999999999999999999999            9999999999999999999999999999999999999999999


Q ss_pred             cC-CceEEEEEeeecCCCceeeeEEEEeeecCCCccccceeEEEEeecCcccccccccccCCeEEEeeccc
Q 023960           82 RI-DLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVI  151 (274)
Q Consensus        82 ~~-d~l~i~l~~~~s~~~~~~~w~l~v~~v~g~~~p~sfiksVeVsf~d~~~~r~a~l~k~PF~i~~~~~~  151 (274)
                      +. |++++.+..+..+.....+|.+...++++...+.+|++.++ |         .+++++||.-.++..+
T Consensus       288 ~~~d~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s---------pi~~~~~~~~~~k~~r  348 (353)
T KOG1905|consen  288 RLPDPIFILLTLSRPGEEHTIPQPLLKNSVEETTKQEPFISTIS-S---------PILKGPRIRTPIKNGR  348 (353)
T ss_pred             CCCcccccccccCCCCccccccccccccccccCCCCCccccccc-c---------ccccCCCCcCCccCcc
Confidence            85 99988888776667788999999999999888899999998 2         2566666655544433

>PRK14138 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PTZ00408 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>PRK05333 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PRK00481 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>PTZ00410 NAD-dependent SIR2; Provisional Back     alignment and domain information
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein Back     alignment and domain information
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription] Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional Back     alignment and domain information
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional Back     alignment and domain information
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional Back     alignment and domain information
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription] Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 3e-07
3pki_A355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 4e-07
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 Back     alignment and structure
 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 46  QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQ 87
           Q T  D+ A L IHG+VD+V+  +M  L L IP +    +L+
Sbjct: 242 QPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLE 283
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
3k35_A318 NAD-dependent deacetylase sirtuin-6; rossmann fold 99.6
3pki_A355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 99.56
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 99.3
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 99.27
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 99.26
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 99.25
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 99.22
4iao_A492 NAD-dependent histone deacetylase SIR2; protein co 99.21
1m2k_A249 Silent information regulator 2; protein-ligand com 99.2
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 99.15
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 99.11
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 98.99
1q14_A361 HST2 protein; histone deacetylase, hydrolase; 2.50 98.95
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 98.93
3rls_A175 YAF9, protein AF-9 homolog; yeats domain, histone, 97.23
3qrl_A140 Transcription initiation factor TFIID subunit 14; 97.09
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.01
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 92.6
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 91.77
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 91.7
2q28_A564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 91.65
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 90.9
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 90.71
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.7
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 90.56
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 90.08
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 89.28
1o97_D320 Electron transferring flavoprotein alpha-subunit; 89.07
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 88.12
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 87.5
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 87.37
2x7j_A604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 86.37
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 83.55
1efv_A315 Electron transfer flavoprotein; electron transport 80.97
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Back     alignment and structure
Probab=99.60  E-value=1.1e-15  Score=143.03  Aligned_cols=72  Identities=26%  Similarity=0.359  Sum_probs=68.0

Q ss_pred             HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcc
Q 023960           14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI   81 (274)
Q Consensus        14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~   81 (274)
                      -.|..++++||++|||||||+||||            ++++||+++|++|..||++|+++++++|++|+++|+++||.|+
T Consensus       198 ~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~  277 (318)
T 3k35_A          198 ALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWD  277 (318)
T ss_dssp             HHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCC
T ss_pred             HHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCC
Confidence            4578889999999999999999999            8999999999999999999999999999999999999999999


Q ss_pred             cCCc
Q 023960           82 RIDL   85 (274)
Q Consensus        82 ~~d~   85 (274)
                      ..+-
T Consensus       278 ~~~~  281 (318)
T 3k35_A          278 GPRV  281 (318)
T ss_dssp             SCBC
T ss_pred             CCce
Confidence            8744
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Back     alignment and structure
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Back     alignment and structure
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* Back     alignment and structure
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Back     alignment and structure
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Back     alignment and structure
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A Back     alignment and structure
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1yc5a1245 NAD-dependent deacetylase NpdA {Thermotoga maritim 99.44
d1s5pa_235 NAD-dependent deacetylase CobB {Escherichia coli [ 99.38
d1m2ka_249 AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo 99.29
d2b4ya1267 NAD-dependent deacetylase sirtuin-5 {Human (Homo s 99.29
d1ma3a_252 AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog 99.26
d1q1aa_289 Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.2
d1j8fa_323 Sirt2 histone deacetylase {Human (Homo sapiens) [T 98.87
d2ihta1177 Carboxyethylarginine synthase {Streptomyces clavul 97.16
d2ji7a1175 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 97.14
d2djia1177 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 97.07
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 96.95
d2ez9a1183 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.94
d1t9ba1171 Acetohydroxyacid synthase catalytic subunit {Baker 96.78
d1ozha1179 Catabolic acetolactate synthase {Klebsiella pneumo 96.71
d1q6za1160 Benzoylformate decarboxylase {Pseudomonas putida [ 95.86
d1efva2124 C-terminal domain of the electron transfer flavopr 93.41
d1zpda1175 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 92.93
d1ovma1161 Indole-3-pyruvate decarboxylase {Enterobacter cloa 92.81
d1pvda1179 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 92.05
d3clsd2123 C-terminal domain of the electron transfer flavopr 91.2
d1ytla1158 Acetyl-CoA decarbonylase/synthase complex epsilon 80.26
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=6.2e-14  Score=122.44  Aligned_cols=63  Identities=17%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcc
Q 023960           13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNL   75 (274)
Q Consensus        13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l   75 (274)
                      +--|..++++||++|||||||.|+||            ++|+||+++|++|..||++|+++++++|++|+++||+
T Consensus       171 ~~~a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~g~~~e~l~~l~~~lgi  245 (245)
T d1yc5a1         171 LREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI  245 (245)
T ss_dssp             HHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence            44578889999999999999999999            8999999999999999999999999999999999985
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure