Citrus Sinensis ID: 023968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MIENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEEEEEEHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mienldvtdiprdetlenlnqdgvesplynflypdkellpddkemSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFleapvksegvrflqlapgeffFTTLKVSGYcglllgspVILYEIIAFVLPGLTRAERRFLgpivlgssVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAavltpstdpvTQMLLAAPLLGLYFGGAWMVKLTGR
Flexible Loop (DISEMBL)
mienldvtdiprdetlenlnqdgvespLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Low Complexity Region (SEG)
MIENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIqlllgqvglvTSDQMLSIWRYvvvgaviaaavLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered region (IsUnstruct)
*************************SPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL***
Disordered Region (DISOPRED)
***********************************************FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered Region (DISEMBL)
MIENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Disordered Region (DISPRO)
***************************LYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9SJV5	340	Sec-independent protein t	yes	no	0.996	0.802	0.829	1e-123
Q94G17	353	Sec-independent protein t	N/A	no	0.992	0.770	0.819	1e-116
Q9AVE6	359	Sec-independent protein t	yes	no	0.959	0.732	0.859	1e-112
C4IZX0	356	Sec-independent protein t	N/A	no	0.970	0.747	0.822	1e-104
P54086	254	Sec-independent protein t	N/A	no	0.854	0.921	0.618	1e-81
Q6B8S9	238	Uncharacterized tatC-like	N/A	no	0.843	0.970	0.480	6e-66
O78493	290	Uncharacterized tatC-like	yes	no	0.824	0.779	0.504	6e-62
P51264	254	Uncharacterized tatC-like	N/A	no	0.875	0.944	0.464	3e-60
Q9TLS5	239	Uncharacterized tatC-like	N/A	no	0.835	0.958	0.467	5e-57
Q1XDM3	254	Uncharacterized tatC-like	N/A	no	0.879	0.948	0.458	2e-56

>sp|Q9SJV5|TATC_ARATH Sec-independent protein translocase protein TATC, chloroplastic OS=Arabidopsis thaliana GN=TATC PE=1 SV=2

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/282 (82%), Positives = 253/282 (89%), Gaps = 9/282 (3%)

Query: 2   IENLDVTDIPRDET------LENLNQDGVE---SPLYNFLYPDKELLPDDKEMSIFDHLE 52
           +  L+  D P + T      +E+   D  E   S +Y FLYP KE LPDDKEM+IFDHLE
Sbjct: 59  VSALNDDDSPTETTPGVGSAVEDRPPDSSEDRSSSVYEFLYPRKEELPDDKEMTIFDHLE 118

Query: 53  ELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGY 112
           ELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFFTTLKVSGY
Sbjct: 119 ELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFFTTLKVSGY 178

Query: 113 CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFF 172
           CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVLTPAALNFF
Sbjct: 179 CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVLTPAALNFF 238

Query: 173 VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVV 232
           VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQMLSIWRYVV
Sbjct: 239 VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQMLSIWRYVV 298

Query: 233 VGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           VGAV+AAAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 299 VGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94G17|TATC_PEA Sec-independent protein translocase protein TATC, chloroplastic OS=Pisum sativum GN=TATC PE=1 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/272 (81%), Positives = 248/272 (91%)

Query: 3   ENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 62
           EN D+ D   +E LEN  +DG  S +Y+FLYP KELLPDDKEMSIFDHLEELR+RIF+SV
Sbjct: 82  ENKDMIDGISEEALENFKEDGERSAIYDFLYPSKELLPDDKEMSIFDHLEELRERIFISV 141

Query: 63  LAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 122
           L VG +ILGCFA+SK+L+  LEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSP+I
Sbjct: 142 LGVGGSILGCFAFSKDLVKILEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPII 201

Query: 123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES 182
           LYEIIAF++PGLT+ ER+FLGPIVLGSSVLFYAGI FSY VL PAALNFFVNYAEG VES
Sbjct: 202 LYEIIAFIIPGLTKEERKFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVES 261

Query: 183 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 242
           LWSIDQYFEFVLVLMFSTGLSFQVP+IQLLLGQ+GLV+ D+MLS+WRYVVVGAV+AAAV+
Sbjct: 262 LWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDKMLSVWRYVVVGAVVAAAVV 321

Query: 243 TPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TPSTDP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct: 322 TPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Pisum sativum (taxid: 3888)

>sp|Q9AVE6|TATC_ORYSJ Sec-independent protein translocase protein TATC, chloroplastic OS=Oryza sativa subsp. japonica GN=TATC PE=2 SV=1

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/263 (85%), Positives = 241/263 (91%)

Query: 12  RDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILG 71
           ++ +   + +D  +S LYNFLYP KELLPDDKEMSIFDHLEELR RIFVSVLAVGAAILG
Sbjct: 97  QNGSFGGITEDEEQSSLYNFLYPSKELLPDDKEMSIFDHLEELRDRIFVSVLAVGAAILG 156

Query: 72  CFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVL 131
           CFAYSK+LI  LEAPV  +GVRFLQL+PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVL
Sbjct: 157 CFAYSKDLIRILEAPVSVQGVRFLQLSPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVL 216

Query: 132 PGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFE 191
           PGLTR ER+FLGPIVLGSSVLFY GI FSY VL PAALNFFVNYA+G VESLWSIDQYFE
Sbjct: 217 PGLTRDERKFLGPIVLGSSVLFYLGIFFSYTVLAPAALNFFVNYADGAVESLWSIDQYFE 276

Query: 192 FVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQ 251
           FVLVL+FSTGLSFQVPVIQLLLGQVGLV+SDQMLSIWRYVVVGAV+AAAVLTPSTDP+TQ
Sbjct: 277 FVLVLLFSTGLSFQVPVIQLLLGQVGLVSSDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQ 336

Query: 252 MLLAAPLLGLYFGGAWMVKLTGR 274
           MLLA PLLGLY GGAWMVKLTGR
Sbjct: 337 MLLAGPLLGLYLGGAWMVKLTGR 359

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|C4IZX0|TATC_MAIZE Sec-independent protein translocase protein TATC, chloroplastic OS=Zea mays GN=TATC PE=2 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/270 (82%), Positives = 245/270 (90%), Gaps = 4/270 (1%)

Query: 9   DIPRDETLENLNQDGV----ESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLA 64
           D P    +EN +  G     +S LY FLYP K+LLPDDKEMSIFDHLEELR RIF+SVLA
Sbjct: 87  DPPPGPPVENGSFGGPSQEEQSALYTFLYPSKDLLPDDKEMSIFDHLEELRDRIFISVLA 146

Query: 65  VGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILY 124
           VGAAILGCFA+SK+L++FLEAPV ++GVRFLQL+PGEFFFTTLKVSGYCGLLLGSP+ILY
Sbjct: 147 VGAAILGCFAFSKDLVIFLEAPVTAQGVRFLQLSPGEFFFTTLKVSGYCGLLLGSPIILY 206

Query: 125 EIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW 184
           EIIAFV+PGLTR ER+FLGPIVLGSSVLFY GI FSY VL+PAALNFFVNYA+G VESLW
Sbjct: 207 EIIAFVIPGLTRDERKFLGPIVLGSSVLFYLGIFFSYTVLSPAALNFFVNYADGAVESLW 266

Query: 185 SIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTP 244
           SIDQYFEF+LVLMFSTGLSFQVPVIQLLLGQ+GLV+SDQMLSIWRYVVVGAV+AAAVLTP
Sbjct: 267 SIDQYFEFILVLMFSTGLSFQVPVIQLLLGQLGLVSSDQMLSIWRYVVVGAVVAAAVLTP 326

Query: 245 STDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           STDP+TQMLLA PLLGLY GGAWMVK+TGR
Sbjct: 327 STDPLTQMLLAGPLLGLYLGGAWMVKITGR 356

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across the thylakoid membrane. Involved in delta pH-dependent protein transport required for chloroplast development, especially thylakoid membrane formation. TATC and TATB mediate precursor recognition, whereas TATA facilitates translocation.

Zea mays (taxid: 4577)

>sp|P54086|TATC_SYNY3 Sec-independent protein translocase protein TatC OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=tatC PE=3 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/236 (61%), Positives = 193/236 (81%), Gaps = 2/236 (0%)

Query: 39  LPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLA 98
           +PDD EMS+FDHL+ELR RIF+S+ AV   ++ CF + K L+ +L+ P  +  V+FLQL+
Sbjct: 21  VPDDVEMSLFDHLDELRTRIFLSLGAVLVGVVACFIFVKPLVQWLQVPAGT--VKFLQLS 78

Query: 99  PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIA 158
           PGEFFF ++KV+GY G+L+ SP ILY+II FVLPGLTR ERR LGP+VLGSSVLF+AG+ 
Sbjct: 79  PGEFFFVSVKVAGYSGILVMSPFILYQIIQFVLPGLTRRERRLLGPVVLGSSVLFFAGLG 138

Query: 159 FSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGL 218
           F+Y+ L PAAL FFV+Y   VVE LWSID+YFEFVL+LMFSTGL+FQ+P+IQ++LG +G+
Sbjct: 139 FAYYALIPAALKFFVSYGADVVEQLWSIDKYFEFVLLLMFSTGLAFQIPIIQVVLGFLGI 198

Query: 219 VTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           V+S+QML  WR+V++GA++  A+LTPSTDP+TQ LLA  +LGLYFGG   V+L G+
Sbjct: 199 VSSEQMLKGWRFVILGAMVLGAILTPSTDPLTQSLLAGAVLGLYFGGIGCVRLLGK 254

Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6B8S9|YCF43_GRATL Uncharacterized tatC-like protein ycf43 OS=Gracilaria tenuistipitata var. liui GN=ycf43 PE=3 SV=1

 Score =  250 bits (639), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 170/233 (72%), Gaps = 2/233 (0%)

Query: 42  DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGE 101
           + EMSIF+HLEELRQRIF++ L        CF Y K +   L+ P  + G++FLQLAPGE
Sbjct: 8   NTEMSIFEHLEELRQRIFIAALIFIVITAICFTYMKNISYILQQP--AIGIKFLQLAPGE 65

Query: 102 FFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSY 161
           + FT++KV+ Y G LL SP I+Y+I  F+LPGLT+ E  F+ PI+  S +LF++GI F+Y
Sbjct: 66  YLFTSIKVALYSGFLLSSPFIIYQITLFILPGLTKKESNFIVPILFISIILFFSGIVFAY 125

Query: 162 WVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTS 221
            +L PAAL F +NY   +VE +WS +QYF F+L+L+FSTG++FQ+P+IQ++LG + + +S
Sbjct: 126 IILVPAALKFLINYGNEIVEPIWSFEQYFNFILLLLFSTGIAFQIPIIQVILGILKIFSS 185

Query: 222 DQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
            +M + W+Y+V+GA + AA++TPSTDP+TQ++++  +L LY  G  ++K+  +
Sbjct: 186 SEMYAYWKYIVLGATVIAAIITPSTDPITQIIMSIAILALYSSGIIILKILNK 238

Gracilaria tenuistipitata var. liui (taxid: 285951)

>sp|O78493|YCF43_GUITH Uncharacterized tatC-like protein ycf43 OS=Guillardia theta GN=ycf43 PE=3 SV=1

 Score =  237 bits (605), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 168/228 (73%), Gaps = 2/228 (0%)

Query: 42  DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGE 101
           + EMS+ +HLEE+RQR F S   +   I+ C  + K ++  L+ P  + G++FLQ APGE
Sbjct: 54  EAEMSLAEHLEEIRQRAFWSFSVLTTMIISCIIFVKNIVKTLQEP--AAGIKFLQFAPGE 111

Query: 102 FFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSY 161
           +FF ++KV+ Y G+L+ SP I+Y+I+ FVLPG+T+ ER+ L PI++GS +LF  G+ F Y
Sbjct: 112 YFFASIKVAAYSGILISSPFIVYQILLFVLPGMTKDERKTLLPIIIGSMILFLLGLIFGY 171

Query: 162 WVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTS 221
           ++L PA+LNFF+ Y   VVE  WS +QYFEF+LVL+F T L+FQ+PV+QL+LG + +V+ 
Sbjct: 172 YILVPASLNFFIKYGSDVVEPFWSFEQYFEFILVLLFGTALAFQLPVLQLVLGFLRIVSG 231

Query: 222 DQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMV 269
             M SIWRYV++ + +  AVLTPS DP+TQ+LL++ +L LYFGGA +V
Sbjct: 232 KTMFSIWRYVILLSTVVGAVLTPSVDPLTQILLSSIILILYFGGASLV 279

Guillardia theta (taxid: 55529)

>sp|P51264|YCF43_PORPU Uncharacterized tatC-like protein ycf43 OS=Porphyra purpurea GN=ycf43 PE=3 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/256 (46%), Positives = 179/256 (69%), Gaps = 16/256 (6%)

Query: 11  PRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQR-IFVSVLAVGAAI 69
           P++  L N+N +    P             +D  MSI +HLEELRQR +FV +  + AA 
Sbjct: 5   PQNNLLANINTNSENLP------------ENDVPMSITEHLEELRQRTVFVFIFFLLAAT 52

Query: 70  LGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAF 129
           +  F   K ++   +AP  + G++FLQLAPGE+FF+++K++ YCG++  +P  +Y++I +
Sbjct: 53  IS-FTQIKIIVEIFQAP--AIGIKFLQLAPGEYFFSSIKIAIYCGIVATTPFGVYQVILY 109

Query: 130 VLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQY 189
           +LPGLT  ER+ + PI++GS VLF  G  F+Y+VL PAALNF ++Y   +VE LWS +QY
Sbjct: 110 ILPGLTNKERKVILPILIGSIVLFIVGGIFAYFVLAPAALNFLISYGADIVEPLWSFEQY 169

Query: 190 FEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPV 249
           F+F+L+L+FSTGL+F++P+IQLLLG  G V++ QML  WRY+++ + I  AVLTPSTDPV
Sbjct: 170 FDFILLLLFSTGLAFEIPIIQLLLGISGTVSASQMLLAWRYIIIISTIIGAVLTPSTDPV 229

Query: 250 TQMLLAAPLLGLYFGG 265
           TQ+++++ +L LYF G
Sbjct: 230 TQIIMSSAVLALYFSG 245

Porphyra purpurea (taxid: 2787)

>sp|Q9TLS5|YCF43_CYACA Uncharacterized tatC-like protein ycf43 OS=Cyanidium caldarium GN=ycf43 PE=3 SV=1

 Score =  221 bits (562), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 169/231 (73%), Gaps = 2/231 (0%)

Query: 41  DDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPG 100
           D  +MSI++HLEELRQR   S++A+  +++ C      LI  ++ P  + G++FLQL+PG
Sbjct: 8   DSFQMSIYEHLEELRQRSIESIVALLISMVVCSLNINILIELIKQP--AIGIKFLQLSPG 65

Query: 101 EFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFS 160
           E+FFT++K++ Y G++L SP+I YEII F++PGLT+ ERR L PI++ S  LF AG+ F 
Sbjct: 66  EYFFTSIKITLYLGIILSSPIIFYEIIIFIIPGLTKKERRLLIPILIASGCLFVAGLIFG 125

Query: 161 YWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVT 220
           Y  +TP A+ FF+NY + ++E +WS  +YF+F+++ +FST +SFQ+P+ Q+LLG + ++ 
Sbjct: 126 YIYITPIAVRFFINYGKDMIEPIWSFKEYFDFIILSLFSTAISFQIPIFQILLGSLKIIN 185

Query: 221 SDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKL 271
           S  MLS+WRYVVVG+ I +A++TPSTDP+ Q+ L+  ++ LYF    ++KL
Sbjct: 186 SKMMLSVWRYVVVGSTIFSAIITPSTDPLIQLFLSVAVMFLYFSSILVLKL 236

Cyanidium caldarium (taxid: 2771)

>sp|Q1XDM3|YCF43_PORYE Uncharacterized tatC-like protein ycf43 OS=Porphyra yezoensis GN=ycf43 PE=3 SV=1

 Score =  219 bits (558), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/255 (45%), Positives = 173/255 (67%), Gaps = 14/255 (5%)

Query: 11  PRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAIL 70
           P++  L N N D V+ P             +D  MSI +HLEELRQR     L    A  
Sbjct: 5   PQNNLLTNENIDHVDIP------------ENDIPMSITEHLEELRQRTLFVFLFFLFATT 52

Query: 71  GCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFV 130
             F   K ++  L+AP  + G++FLQLAPGE+FF+++KV+ YCG++  +P  +Y++I ++
Sbjct: 53  ISFTQIKIIVAILQAP--AVGIKFLQLAPGEYFFSSIKVAIYCGIVATTPFAVYQVILYI 110

Query: 131 LPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYF 190
           LPGLT  ER+ + P+++ S +LF  G  F+Y+VL PAAL F ++Y   +VE LWS +QYF
Sbjct: 111 LPGLTGKERKIILPLLISSVLLFITGGIFAYFVLAPAALTFLISYGSDIVEPLWSFEQYF 170

Query: 191 EFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVT 250
           +F+L+L+ STGL+F++P+IQLLLG  G  +S QM+  WRY+++ A IA A+LTPSTDPVT
Sbjct: 171 DFILLLLLSTGLAFEIPIIQLLLGVSGTFSSSQMIRAWRYIIIIATIAGAILTPSTDPVT 230

Query: 251 QMLLAAPLLGLYFGG 265
           Q+++++ +L LYFGG
Sbjct: 231 QLIMSSAVLLLYFGG 245

Porphyra yezoensis (taxid: 2788)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
356575606	344	PREDICTED: sec-independent protein trans	0.989	0.787	0.867	1e-125
356536260	346	PREDICTED: sec-independent protein trans	0.992	0.786	0.852	1e-124
255639374	343	unknown [Glycine max]	0.992	0.793	0.841	1e-122
25312108	327	TATC-like protein [imported] - Arabidops	0.930	0.779	0.890	1e-121
18379153	340	Sec-independent periplasmic protein tran	0.996	0.802	0.829	1e-121
297817696	339	hypothetical protein ARALYDRAFT_484017 [	0.992	0.802	0.840	1e-121
449493436	347	PREDICTED: sec-independent protein trans	0.967	0.763	0.832	1e-119
449434578	347	PREDICTED: sec-independent protein trans	0.967	0.763	0.832	1e-118
388512401	343	unknown [Medicago truncatula]	0.978	0.781	0.832	1e-116
75165674	353	RecName: Full=Sec-independent protein tr	0.992	0.770	0.819	1e-115

>gi|356575606|ref|XP_003555930.1| PREDICTED: sec-independent protein translocase protein TatC-like [Glycine max]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/271 (86%), Positives = 250/271 (92%)

Query: 4   NLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVL 63
           N D+ +   +ET  N  QDG   P+YNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVL
Sbjct: 74  NTDLFESTTEETQGNFRQDGEPGPIYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVL 133

Query: 64  AVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVIL 123
           AVGA+ILGCFA+SKELIM LEAPVKS+GVRFLQLAPGEFFFTTLKVSGYCGLLLG PVIL
Sbjct: 134 AVGASILGCFAFSKELIMILEAPVKSQGVRFLQLAPGEFFFTTLKVSGYCGLLLGIPVIL 193

Query: 124 YEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESL 183
           YEIIAFVLPGLT+AERRFLGPIVLGSSVLFYAGI FSY VLTPAALNFFV YAEG VESL
Sbjct: 194 YEIIAFVLPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVTYAEGAVESL 253

Query: 184 WSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLT 243
           WSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQMLSIWRYVVVGAV+AAA++T
Sbjct: 254 WSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQMLSIWRYVVVGAVVAAAIVT 313

Query: 244 PSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           PSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 314 PSTDPLTQVLLAAPLLGLYLGGAWMVKLTGR 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536260|ref|XP_003536657.1| PREDICTED: sec-independent protein translocase protein TatC-like [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/272 (85%), Positives = 251/272 (92%)

Query: 3   ENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 62
           EN D+ +   +ET  N  QDG    +Y+FLYPDKELLPDDKEMSIFDHLEELRQRIFVSV
Sbjct: 75  ENADLFESTAEETQGNFGQDGDRGAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 134

Query: 63  LAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 122
           LAVGA+ILGCFA+SKELIM LEAPVK++GVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI
Sbjct: 135 LAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 194

Query: 123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES 182
           LYE+IAFVLPGLT++ERRFLGPIVLGSSVLFYAGI FSY VLTPAALNFFV YAEG VES
Sbjct: 195 LYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVTYAEGAVES 254

Query: 183 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 242
           LWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQMLSIWRYVVVGAV+AAA++
Sbjct: 255 LWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQMLSIWRYVVVGAVVAAAIV 314

Query: 243 TPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 315 TPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639374|gb|ACU19983.1| unknown [Glycine max]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/272 (84%), Positives = 248/272 (91%)

Query: 3   ENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 62
           E  D+ +    ET  N  QDG    +Y+FLYPDKE LPDDKEMSIFDHLEELRQRIFVSV
Sbjct: 72  ERPDLFESTAVETQGNFGQDGDRGAIYDFLYPDKEFLPDDKEMSIFDHLEELRQRIFVSV 131

Query: 63  LAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 122
           LAVGA+ILGCFA+SKELIM LEAPVK++GVRFLQLAPGEFFFTTLKVSG+CGLLLGSPVI
Sbjct: 132 LAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGHCGLLLGSPVI 191

Query: 123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES 182
           LYE+IAFVLPGLT++ERRFLGPIVLGSSVLFYAGI FSY VLTPAALNFFV YAEG VES
Sbjct: 192 LYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVTYAEGAVES 251

Query: 183 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 242
           LWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQ+GLV+ DQMLSIWRYVVVGAV+AAA++
Sbjct: 252 LWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQMLSIWRYVVVGAVVAAAIV 311

Query: 243 TPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TPSTDP+TQ+LLAAPLLGLY GGAWMVKLTGR
Sbjct: 312 TPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25312108|pir||G84420 TATC-like protein [imported] - Arabidopsis thaliana

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/255 (89%), Positives = 243/255 (95%)

Query: 20  NQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKEL 79
           + +   S +Y FLYP KE LPDDKEM+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+L
Sbjct: 73  SSEDRSSSVYEFLYPRKEELPDDKEMTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDL 132

Query: 80  IMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAER 139
           I+FLEAPVK++GVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAER
Sbjct: 133 IVFLEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAER 192

Query: 140 RFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFS 199
           RFLGPIV GSS+LFYAG+AFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFS
Sbjct: 193 RFLGPIVFGSSLLFYAGLAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFS 252

Query: 200 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLL 259
           TGLSFQVPVIQLLLGQVG+V+ DQMLSIWRYVVVGAV+AAAV+TPSTDPVTQMLLA PLL
Sbjct: 253 TGLSFQVPVIQLLLGQVGVVSGDQMLSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLL 312

Query: 260 GLYFGGAWMVKLTGR 274
           GLY GGAWMVKLTGR
Sbjct: 313 GLYLGGAWMVKLTGR 327

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class: N/A

Phylum: Streptophyta

>gi|18379153|ref|NP_565252.1| Sec-independent periplasmic protein translocase [Arabidopsis thaliana] gi|75206327|sp|Q9SJV5.2|TATC_ARATH RecName: Full=Sec-independent protein translocase protein TATC, chloroplastic; AltName: Full=Protein ALBINO AND PALE GREEN 2; AltName: Full=Protein TWIN-ARGININE TRANSLOCATION C; AltName: Full=Protein UNFERTILIZED EMBRYO SAC 3; Flags: Precursor gi|4929312|gb|AAD33946.1|AF145045_1 TATC [Arabidopsis thaliana] gi|13430520|gb|AAK25882.1|AF360172_1 putative TATC protein [Arabidopsis thaliana] gi|15004994|dbj|BAB62074.1| cpTatC [Arabidopsis thaliana] gi|15810617|gb|AAL07196.1| putative TATC protein [Arabidopsis thaliana] gi|20197905|gb|AAF18659.2| TATC-like protein [Arabidopsis thaliana] gi|21537010|gb|AAM61351.1| TATC-like protein [Arabidopsis thaliana] gi|330250308|gb|AEC05402.1| Sec-independent periplasmic protein translocase [Arabidopsis thaliana]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/282 (82%), Positives = 253/282 (89%), Gaps = 9/282 (3%)

Query: 2   IENLDVTDIPRDET------LENLNQDGVE---SPLYNFLYPDKELLPDDKEMSIFDHLE 52
           +  L+  D P + T      +E+   D  E   S +Y FLYP KE LPDDKEM+IFDHLE
Sbjct: 59  VSALNDDDSPTETTPGVGSAVEDRPPDSSEDRSSSVYEFLYPRKEELPDDKEMTIFDHLE 118

Query: 53  ELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGY 112
           ELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFFTTLKVSGY
Sbjct: 119 ELRERIFVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFFTTLKVSGY 178

Query: 113 CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFF 172
           CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVLTPAALNFF
Sbjct: 179 CGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVLTPAALNFF 238

Query: 173 VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVV 232
           VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQMLSIWRYVV
Sbjct: 239 VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQMLSIWRYVV 298

Query: 233 VGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           VGAV+AAAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 299 VGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817696|ref|XP_002876731.1| hypothetical protein ARALYDRAFT_484017 [Arabidopsis lyrata subsp. lyrata] gi|297322569|gb|EFH52990.1| hypothetical protein ARALYDRAFT_484017 [Arabidopsis lyrata subsp. lyrata]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/276 (84%), Positives = 250/276 (90%), Gaps = 4/276 (1%)

Query: 3   ENLDVTDIPR-DETLENLNQDGVE---SPLYNFLYPDKELLPDDKEMSIFDHLEELRQRI 58
           +N D +  P     +E+   D  E   S +Y FLYP KE LPDDKEM+IFDHLEELR+RI
Sbjct: 64  DNSDDSPTPGVGSAVEDRPPDASEDRSSSVYEFLYPRKEELPDDKEMTIFDHLEELRERI 123

Query: 59  FVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLG 118
           FVSVLAVGAAILGCFA+SK+LI+FLEAPVK++GVRFLQLAPGEFFFTTLKVSGYCGLLLG
Sbjct: 124 FVSVLAVGAAILGCFAFSKDLIVFLEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLG 183

Query: 119 SPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEG 178
           SPVILYEIIAFVLPGLTRAERRFLGPIV GSS+LFYAG+AFSYWVLTPAALNFFVNYAEG
Sbjct: 184 SPVILYEIIAFVLPGLTRAERRFLGPIVFGSSLLFYAGLAFSYWVLTPAALNFFVNYAEG 243

Query: 179 VVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIA 238
           VVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVG+V+ DQMLSIWRYVVVGAV+ 
Sbjct: 244 VVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVVSGDQMLSIWRYVVVGAVVV 303

Query: 239 AAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           AAV+TPSTDPVTQMLLA PLLGLY GGAWMVKLTGR
Sbjct: 304 AAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493436|ref|XP_004159288.1| PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Cucumis sativus]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/269 (83%), Positives = 248/269 (92%), Gaps = 4/269 (1%)

Query: 6   DVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAV 65
           DV DI ++ T   L++    S +YNFLYP K+LLPDD+EMS+FDHLEELRQRIFVSVLAV
Sbjct: 83  DVPDIAKNSTNGALDK----SDIYNFLYPSKDLLPDDREMSVFDHLEELRQRIFVSVLAV 138

Query: 66  GAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYE 125
           GAAI+GCFA+SK+LI+ LEAPVK +GVRFLQL PGEFFFTTLKVSGYCGLLLGSPVILYE
Sbjct: 139 GAAIVGCFAFSKDLILLLEAPVKEQGVRFLQLGPGEFFFTTLKVSGYCGLLLGSPVILYE 198

Query: 126 IIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWS 185
           IIAFVLPGLTR ER+FL PIVLGSS+LFYAGIAFSY VLTPAALNFFV+YAEG VESLWS
Sbjct: 199 IIAFVLPGLTRTERQFLAPIVLGSSILFYAGIAFSYVVLTPAALNFFVSYAEGAVESLWS 258

Query: 186 IDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPS 245
           IDQYFEFVLVLMFSTGLSFQVPVIQ+LLGQ+GLV+ DQMLSIWRYVVVGAV+AAAVLTPS
Sbjct: 259 IDQYFEFVLVLMFSTGLSFQVPVIQILLGQLGLVSGDQMLSIWRYVVVGAVVAAAVLTPS 318

Query: 246 TDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TDP+TQ+LLAAPLLGLY GGAW+VKL+GR
Sbjct: 319 TDPLTQVLLAAPLLGLYLGGAWVVKLSGR 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434578|ref|XP_004135073.1| PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Cucumis sativus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/269 (83%), Positives = 247/269 (91%), Gaps = 4/269 (1%)

Query: 6   DVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAV 65
           DV DI ++ T    N    +S +YNFLYP K+LLPDD+EMS+FDHLEELRQRIFVSVLAV
Sbjct: 83  DVPDIAKNST----NGAPDKSDIYNFLYPSKDLLPDDREMSVFDHLEELRQRIFVSVLAV 138

Query: 66  GAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYE 125
           GAAI+GCFA+SK+LI+ LEAPVK +GVRFLQL PGEFFFTTLKVSGYCGLLLGSPVILYE
Sbjct: 139 GAAIVGCFAFSKDLILLLEAPVKEQGVRFLQLGPGEFFFTTLKVSGYCGLLLGSPVILYE 198

Query: 126 IIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWS 185
           IIAFVLPGLTR ER+FL PIVLGSS+LFYAGIAFSY VLTPAALNFFV+YAEG VESLWS
Sbjct: 199 IIAFVLPGLTRTERQFLAPIVLGSSILFYAGIAFSYVVLTPAALNFFVSYAEGAVESLWS 258

Query: 186 IDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPS 245
           IDQYFEFVLVLMFSTGLSFQVPVIQ+LLGQ+GLV+ DQMLSIWRYVVVGAV+AAAVLTPS
Sbjct: 259 IDQYFEFVLVLMFSTGLSFQVPVIQILLGQLGLVSGDQMLSIWRYVVVGAVVAAAVLTPS 318

Query: 246 TDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TDP+TQ+LLAAPLLGLY GGAW+VKL+GR
Sbjct: 319 TDPLTQVLLAAPLLGLYLGGAWVVKLSGR 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512401|gb|AFK44262.1| unknown [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/268 (83%), Positives = 248/268 (92%)

Query: 7   VTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVG 66
           + + P +E LEN  +DG  S +Y+FLYPDKELLPDDKEMSIFDHLEELRQRIF+SVL VG
Sbjct: 76  IEERPSEEALENFKEDGERSAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVG 135

Query: 67  AAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEI 126
            +ILGCFA+SK+L+  LEAPV+SEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSP+ILYEI
Sbjct: 136 GSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEI 195

Query: 127 IAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSI 186
           IAF++PGLT+AERRFLGPIVLGSSVLFYAGI FSY VL PAALNFFVNYAEG VESLWSI
Sbjct: 196 IAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSI 255

Query: 187 DQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPST 246
           DQYFEFVLVLMFSTGLSFQVP+IQLLLGQ+GLVT D+MLS+WRYVVVGAV+AAA++TPST
Sbjct: 256 DQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPST 315

Query: 247 DPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           DP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct: 316 DPLTQVLLAAPLLGLYLGGAWMVKLAGR 343

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75165674|sp|Q94G17.1|TATC_PEA RecName: Full=Sec-independent protein translocase protein TATC, chloroplastic; AltName: Full=Protein TWIN-ARGININE TRANSLOCATION C; Short=cpTatC; Flags: Precursor gi|15277529|gb|AAK93948.1|AF284759_1 TatC [Pisum sativum]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/272 (81%), Positives = 248/272 (91%)

Query: 3   ENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 62
           EN D+ D   +E LEN  +DG  S +Y+FLYP KELLPDDKEMSIFDHLEELR+RIF+SV
Sbjct: 82  ENKDMIDGISEEALENFKEDGERSAIYDFLYPSKELLPDDKEMSIFDHLEELRERIFISV 141

Query: 63  LAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 122
           L VG +ILGCFA+SK+L+  LEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSP+I
Sbjct: 142 LGVGGSILGCFAFSKDLVKILEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPII 201

Query: 123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES 182
           LYEIIAF++PGLT+ ER+FLGPIVLGSSVLFYAGI FSY VL PAALNFFVNYAEG VES
Sbjct: 202 LYEIIAFIIPGLTKEERKFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVES 261

Query: 183 LWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVL 242
           LWSIDQYFEFVLVLMFSTGLSFQVP+IQLLLGQ+GLV+ D+MLS+WRYVVVGAV+AAAV+
Sbjct: 262 LWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDKMLSVWRYVVVGAVVAAAVV 321

Query: 243 TPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           TPSTDP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct: 322 TPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
UNIPROTKB|Q94G17	353	TATC "Sec-independent protein	0.992	0.770	0.75	6.3e-108
TAIR|locus:2045750	340	APG2 "ALBINO AND PALE GREEN 2"	0.908	0.732	0.835	6.3e-108
TIGR_CMR|CHY_0863	243	CHY_0863 "sec-independent prot	0.810	0.913	0.310	9.1e-29
UNIPROTKB|Q9KVQ3	250	VC_0088 "Putative uncharacteri	0.846	0.928	0.322	3.9e-28
TIGR_CMR|CPS_0165	255	CPS_0165 "Sec-independent peri	0.802	0.862	0.320	3.9e-28
TIGR_CMR|VC_0088	250	VC_0088 "conserved hypothetica	0.846	0.928	0.322	3.9e-28
TIGR_CMR|CPS_3043	252	CPS_3043 "Sec-independent peri	0.791	0.861	0.319	8.2e-28
TIGR_CMR|DET_1599	261	DET_1599 "Sec-independent prot	0.905	0.950	0.308	1.3e-27
NCBI_NP|NP_354692.1	267	tatC "SEC-independent protein	0.850	0.872	0.317	5.2e-26
UNIPROTKB|P69423	258	tatC [Escherichia coli K-12 (t	0.777	0.825	0.339	1.8e-25

UNIPROTKB|Q94G17 TATC "Sec-independent protein translocase protein TATC, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 204/272 (75%), Positives = 227/272 (83%)

Query:     3 ENLDVTDIPRDETLENLNQDGVESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSV 62
             EN D+ D   +E LEN  +DG  S +Y+FLYP KELLPDDKEMSIFDHLEELR+RIF+SV
Sbjct:    82 ENKDMIDGISEEALENFKEDGERSAIYDFLYPSKELLPDDKEMSIFDHLEELRERIFISV 141

Query:    63 LAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI 122
             L VG +ILGCFA+SK+L+  LEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSP+I
Sbjct:   142 LGVGGSILGCFAFSKDLVKILEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPII 201

Query:   123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVES 182
             LYEIIAF++PGLT+ ER+FLGPIVLGSSVLFYAGI FSY VL PAALNFFVNYAEG VES
Sbjct:   202 LYEIIAFIIPGLTKEERKFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVES 261

Query:   183 LWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQMLSIWRYXXXXXXXXXXXL 242
             LWSIDQYFEFVLVLMFSTGLSFQVP+I          + D+MLS+WRY           +
Sbjct:   262 LWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDKMLSVWRYVVVGAVVAAAVV 321

Query:   243 TPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
             TPSTDP+TQ+LLAAPLLGLY GGAWMVKL GR
Sbjct:   322 TPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0043953 "protein transport by the Tat complex" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2045750 APG2 "ALBINO AND PALE GREEN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 208/249 (83%), Positives = 220/249 (88%)

Query:    26 SPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEA 85
             S +Y FLYP KE LPDDKEM+IFDHLEELR+RIFVSVLAVGAAILGCFA+SK+LI+FLEA
Sbjct:    92 SSVYEFLYPRKEELPDDKEMTIFDHLEELRERIFVSVLAVGAAILGCFAFSKDLIVFLEA 151

Query:    86 PVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPI 145
             PVK++GVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPI
Sbjct:   152 PVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPI 211

Query:   146 VLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQ 205
             V GSS+LFYAG+AFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQ
Sbjct:   212 VFGSSLLFYAGLAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQ 271

Query:   206 VPVIXXXXXXXXXXTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGG 265
             VPVI          + DQMLSIWRY           +TPSTDPVTQMLLA PLLGLY GG
Sbjct:   272 VPVIQLLLGQVGVVSGDQMLSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGG 331

Query:   266 AWMVKLTGR 274
             AWMVKLTGR
Sbjct:   332 AWMVKLTGR 340

GO:0005886 "plasma membrane" evidence=ISM

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0031361 "integral to thylakoid membrane" evidence=IDA

GO:0043235 "receptor complex" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CHY_0863 CHY_0863 "sec-independent protein translocase protein TatC" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 69/222 (31%), Positives = 122/222 (54%)

Query:    41 DDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPG 100
             +DK M++F+HLE LR+ I +SV+A+    +  + Y    +  L  PV +  ++ + +   
Sbjct:     2 EDKPMTLFEHLEALRKVIIISVIAIVIGSIIAYNYVDYFLNILLQPVTALKMKLVFINVT 61

Query:   101 EFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFS 160
             E F T LK++   G++L SP+IL++I +FV PGL  AER+F+  ++    +LF AGI F+
Sbjct:    62 EAFMTKLKIAIILGIILASPIILWQIWSFVAPGLKPAERKFILRMIPVIIILFVAGIVFA 121

Query:   161 YWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXT 220
             ++ +   A  F + +   ++  + +I +Y  F L  +   GL F++PV+          +
Sbjct:   122 FFTVFQIATRFLLQFGGDIMSPMITIGKYISFALNFLIPFGLVFELPVVVYILAKLNIIS 181

Query:   221 SDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 262
              + ++   +Y           LTP  D ++Q+L+AAPLL LY
Sbjct:   182 HEFLVKNRKYALLVVFILAAALTPGPDVISQLLMAAPLLILY 223

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVQ3 VC_0088 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 76/236 (32%), Positives = 115/236 (48%)

Query:    42 DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLA 98
             ++   +  HL ELR R+  +V AV    +G   +S E+  F+  P+      G   +   
Sbjct:     5 EQTQPLISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYEFVSKPLVERLPAGATMIATD 64

Query:    99 PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIA 158
                 FFT LK++    + L  P ILY++ AFV PGL + ERR + P+++ SS+LFY G+A
Sbjct:    65 VASPFFTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYKHERRLIFPLLVSSSLLFYCGVA 124

Query:   159 FSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXX 218
             F+Y+V+ P    FF   + G VE    I  Y +FVL L  + G++F+VPV          
Sbjct:   125 FAYFVVFPLVFGFFTAISLGGVEFATDIASYLDFVLALFLAFGIAFEVPVAIILLCWTGA 184

Query:   219 XTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
              T   +     Y           LTP  D ++Q LLA P+  L+  G +  +   R
Sbjct:   185 TTPKSLSEKRPYIIVGAFVVGMLLTPP-DMISQTLLAIPMCLLFEVGLFFARFYTR 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0165 CPS_0165 "Sec-independent periplasmic protein translocation protein TatC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 73/228 (32%), Positives = 120/228 (52%)

Query:    40 PDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAY-SKELIMFLEAPVKS---EGVRFL 95
             P     S+FDHL ELR R+  S+L V   +  C  Y ++++  ++  P+ +   EG + +
Sbjct:     4 PPTPVASLFDHLLELRNRLLRSILGV-LIVFCCLVYFAQDIYQYVAQPLLATMPEGSQMI 62

Query:    96 QLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYA 155
                    FF   K++    L +  P +LY++ +FV PGL   E+R + P++ GS++LFY+
Sbjct:    63 ATDVASPFFAPFKLTLVLSLFIAMPFVLYQVWSFVAPGLYSNEKRMIAPLMFGSTLLFYS 122

Query:   156 GIAFSYWVLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXX 214
             GIAF+Y+++ P    FF + A EGVV +   I  Y +F+L L F+ G +F++P+      
Sbjct:   123 GIAFAYFLVFPVVFAFFTSVAPEGVVIAT-DISSYLDFILKLFFAFGAAFEIPIAIILMC 181

Query:   215 XXXXXTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 262
                  T D +     Y           LTP  D ++Q +LA P+L L+
Sbjct:   182 WTGMTTPDSLREKRPYVVVGAFVIGMLLTPP-DIISQTMLAVPMLILF 228

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|VC_0088 VC_0088 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 76/236 (32%), Positives = 115/236 (48%)

Query:    42 DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLA 98
             ++   +  HL ELR R+  +V AV    +G   +S E+  F+  P+      G   +   
Sbjct:     5 EQTQPLISHLLELRNRLLKAVAAVVVIFIGLIYFSNEIYEFVSKPLVERLPAGATMIATD 64

Query:    99 PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIA 158
                 FFT LK++    + L  P ILY++ AFV PGL + ERR + P+++ SS+LFY G+A
Sbjct:    65 VASPFFTPLKLTLIAAVFLAVPFILYQVWAFVAPGLYKHERRLIFPLLVSSSLLFYCGVA 124

Query:   159 FSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXX 218
             F+Y+V+ P    FF   + G VE    I  Y +FVL L  + G++F+VPV          
Sbjct:   125 FAYFVVFPLVFGFFTAISLGGVEFATDIASYLDFVLALFLAFGIAFEVPVAIILLCWTGA 184

Query:   219 XTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
              T   +     Y           LTP  D ++Q LLA P+  L+  G +  +   R
Sbjct:   185 TTPKSLSEKRPYIIVGAFVVGMLLTPP-DMISQTLLAIPMCLLFEVGLFFARFYTR 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3043 CPS_3043 "Sec-independent periplasmic protein translocation protein TatC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 71/222 (31%), Positives = 113/222 (50%)

Query:    47 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAP---VKSEGVRFLQLAPGEFF 103
             +FDHL ELR R+  +VL+V         ++ ++  ++  P   V  E  + +       F
Sbjct:    10 LFDHLIELRSRLLKAVLSVLVFFCSMIYFANDIYAYVSLPLLAVMPESGQMIATGVASSF 69

Query:   104 FTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWV 163
             F   K++    + +  P IL++I +F+ PGL R E++ +GP++LGSS LFY GI+F+Y+V
Sbjct:    70 FAPFKLTIVLAIFISMPYILFQIWSFIAPGLYRNEKKLMGPLMLGSSFLFYGGISFAYYV 129

Query:   164 LTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSDQ 223
             + P    FF + A   V     I  Y +FVL L F+ G+ F++P++          T   
Sbjct:   130 VFPIVFAFFTSVAPEGVNIATDISSYLDFVLKLFFAFGIVFEIPIVIILLCWTGFTTPKS 189

Query:   224 MLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY-FG 264
             +     Y           LTP  D ++Q LLA P+L L+ FG
Sbjct:   190 LREKRPYVAVGSFVIAMLLTPP-DIISQTLLAIPMLLLFEFG 230

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|DET_1599 DET_1599 "Sec-independent protein translocase TatC" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 77/250 (30%), Positives = 124/250 (49%)

Query:    25 ESPLYNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLE 84
             E+P  +   P +E     K M I  H  ELRQR   S++A+   +L  F ++  +I FL 
Sbjct:     6 ETPETDEEEPPEEAKAKGK-MPIGGHFNELRQRFTRSIIALIVGVLVAFFFATPIIGFLT 64

Query:    85 APVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGP 144
             AP   +  +  QL   E+      VS + G +L SP ILY++IAF+ P L R E++F+  
Sbjct:    65 APGGPD-FKPAQLGVMEYASVFFNVSLWAGFILASPYILYQLIAFITPALNRNEKKFIFT 123

Query:   145 IVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSF 204
              +   + +F  G+AF+Y+V  P ALN  +++ + VV ++  I  Y   V  ++ + GL F
Sbjct:   124 AIPAVTGMFLLGLAFAYYVALPPALNILLHWGDDVVLTVVGIRDYMNVVTRILIALGLIF 183

Query:   205 QVPVIXXXXXXXXXXTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFG 264
             + P +          +   + S  +            +TP+ DPV Q ++A PL+ LY  
Sbjct:   184 ETPFVIMVLARLGVVSPKWLASKRKIWIVVAFVIAALITPTFDPVNQTIMAGPLIVLYEI 243

Query:   265 GAWMVKLTGR 274
               W+ KL  R
Sbjct:   244 SIWLSKLVYR 253

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

NCBI_NP|NP_354692.1 tatC "SEC-independent protein translocase protein" [Agrobacterium fabrum str. C58 (taxid:176299)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 79/249 (31%), Positives = 120/249 (48%)

Query:    41 DDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGV-------- 92
             +DK   + +HL ELR R+  S+ A   A + CFA +K L   L  P K   +        
Sbjct:     6 EDKPQPLIEHLMELRTRLIWSLGAFFIAFIACFAVAKHLFNLLVIPYKWAVIWAGLDVAK 65

Query:    93 -RFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSV 151
                +  AP EFFFT +KV+ +  +++  PVI  ++  FV PGL + ER    P ++ S +
Sbjct:    66 SSLIYTAPQEFFFTQIKVAMFGAMVISFPVIASQLYKFVAPGLYKNERAAFLPFLIASPI 125

Query:   152 LFYAGIAFSYWVLTPAALNFFVNY----AEGVVE-SLW-SIDQYFEFVLVLMFSTGLSFQ 205
             LF  G A  Y+  TP  + FF+       +G V  SL   + +Y   ++ L+ S GL FQ
Sbjct:   126 LFLIGAALVYFFFTPMVMWFFLAMQQLPVDGEVAISLMPKVSEYLSLIMTLVLSFGLVFQ 185

Query:   206 VPVIXXXXXXXXXXTSDQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGG 265
             +PV+          TSD +    ++           LTP  DP++Q+ LA P + LY   
Sbjct:   186 LPVVTTLLARVGILTSDWLREKRKFAIVMAFVVAAVLTPP-DPMSQIGLALPAIILYEIS 244

Query:   266 AWMVKLTGR 274
              +M +L  R
Sbjct:   245 IYMARLVER 253

GO:0005215 "transporter activity" evidence=ISS

UNIPROTKB|P69423 tatC [Escherichia coli K-12 (taxid:83333)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 75/221 (33%), Positives = 115/221 (52%)

Query:    47 IFDHLEELRQRIFVSVLAVGAAILGCFAY-SKELIMFLEAP-VKS--EGVRFLQLAPGEF 102
             +  HL ELR+R+   ++AV    L C  Y + ++   + AP +K   +G   +       
Sbjct:     9 LITHLIELRKRLLNCIIAVIVIFL-CLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASP 67

Query:   103 FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 162
             FFT +K++    L+L +PVILY++ AF+ P L + ERR + P+++ SS+LFY G+AF+Y+
Sbjct:    68 FFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYF 127

Query:   163 VLTPAALNFFVNYA-EGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTS 221
             V+ P A  F  N A EGV  S   I  Y  FV+ L  + G+SF+VPV           + 
Sbjct:   128 VVFPLAFGFLANTAPEGVQVST-DIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSP 186

Query:   222 DQMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLY 262
             + +     Y           LTP  D  +Q LLA P+  L+
Sbjct:   187 EDLRKKRPYVLVGAFVVGMLLTPP-DVFSQTLLAIPMYCLF 226

GO:0016020 "membrane" evidence=IDA

GO:0008565 "protein transporter activity" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA;IMP

GO:0009977 "proton motive force dependent protein transmembrane transporter activity" evidence=IMP

GO:0033281 "TAT protein transport complex" evidence=IDA

GO:0065002 "intracellular protein transmembrane transport" evidence=IDA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJV5	TATC_ARATH	No assigned EC number	0.8297	0.9963	0.8029	yes	no
D2BJS8	TATC_DEHSV	No assigned EC number	0.3463	0.8394	0.8778	yes	no
Q9AVE6	TATC_ORYSJ	No assigned EC number	0.8593	0.9598	0.7325	yes	no
Q9RW63	TATC_DEIRA	No assigned EC number	0.3013	0.8138	0.8259	yes	no
Q94G17	TATC_PEA	No assigned EC number	0.8198	0.9927	0.7705	N/A	no
P54086	TATC_SYNY3	No assigned EC number	0.6186	0.8540	0.9212	N/A	no
O78493	YCF43_GUITH	No assigned EC number	0.5043	0.8248	0.7793	yes	no
A0L833	TATC_MAGSM	No assigned EC number	0.3348	0.8029	0.8118	yes	no
D1BTU8	TATC_XYLCX	No assigned EC number	0.3056	0.8102	0.8043	yes	no
P44560	TATC_HAEIN	No assigned EC number	0.3080	0.8029	0.8593	yes	no
C0QD59	TATC_DESAH	No assigned EC number	0.3289	0.8138	0.8259	yes	no
Q3ADS0	TATC_CARHZ	No assigned EC number	0.3288	0.8102	0.9135	yes	no
Q92ES8	TATC_LISIN	No assigned EC number	0.3094	0.8065	0.8947	yes	no
C4IZX0	TATC_MAIZE	No assigned EC number	0.8222	0.9708	0.7471	N/A	no
O67305	TATC_AQUAE	No assigned EC number	0.3474	0.8248	0.9416	yes	no
Q8FBI6	TATC_ECOL6	No assigned EC number	0.3392	0.8029	0.8527	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	APG2	APG2 (ALBINO AND PALE GREEN 2); proton motive force dependent protein transmembrane transporter; mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. (340 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	HCF106	HCF106; proton motive force dependent protein transmembrane transporter; HCF106; nuclear gene f [...] (260 aa)	•			•			•		0.996
	SCY1	SCY1 (SecY Homolog 1); P-P-bond-hydrolysis-driven protein transmembrane transporter; SecY Homol [...] (551 aa)				•			•		0.978
	AT5G28750	thylakoid assembly protein, putative; thylakoid assembly protein, putative; FUNCTIONS IN- prote [...] (147 aa)	•		•	•			•		0.964
	AT4G01800	preprotein translocase secA subunit, putative; preprotein translocase secA subunit, putative; F [...] (1022 aa)				•			•		0.953
	CPSRP54	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding [...] (564 aa)				•			•		0.882
	CPFTSY	CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding; chloropla [...] (366 aa)							•		0.851
	AT1G21650	ATP binding / protein binding; ATP binding / protein binding; FUNCTIONS IN- protein binding, AT [...] (1051 aa)							•		0.783
	AT2G44920	thylakoid lumenal 15 kDa protein, chloroplast; thylakoid lumenal 15 kDa protein, chloroplast; F [...] (224 aa)				•					0.756
	AT1G64510	ribosomal protein S6 family protein; ribosomal protein S6 family protein; FUNCTIONS IN- structu [...] (207 aa)				•					0.748
	ALB3	ALB3 (ALBINO 3); P-P-bond-hydrolysis-driven protein transmembrane transporter; member of Chloro [...] (462 aa)				•			•		0.740

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
CHL00182	249	CHL00182, tatC, Sec-independent translocase compon	2e-93
TIGR00945	215	TIGR00945, tatC, Twin arginine targeting (Tat) pro	4e-90
COG0805	255	COG0805, TatC, Sec-independent protein secretion p	9e-72
pfam00902	212	pfam00902, TatC, Sec-independent protein transloca	2e-65
PRK10921	258	PRK10921, PRK10921, twin-arginine protein transloc	2e-35
TIGR01912	237	TIGR01912, TatC-Arch, Twin arginine targeting (Tat	2e-30

>gnl|CDD|177084 CHL00182, tatC, Sec-independent translocase component C; Provisional

 Score =  275 bits (706), Expect = 2e-93
 Identities = 128/245 (52%), Positives = 183/245 (74%), Gaps = 4/245 (1%)

Query: 29  YNFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVK 88
           +NF + D E    D EM + +HLEELRQR+F+S+  +    + CF   K ++  L+AP K
Sbjct: 8   WNFNFLDIED--PDLEMPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK 65

Query: 89  SEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLG 148
             G++FLQL+PGE+FF+++K+S Y GLL+ SP I+Y+II F+LPGLT+ ER+ + P+++ 
Sbjct: 66  --GIKFLQLSPGEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKERKIILPLLIS 123

Query: 149 SSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPV 208
           S VLF  G+ F+Y+VL PAALNFF+NY   VVE LWS DQYF+F+LVL FSTGL+FQ+P+
Sbjct: 124 SLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVLFFSTGLAFQIPI 183

Query: 209 IQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWM 268
           IQ++LG + +++S QMLS WRYV++ + I  A+LTPSTDP+TQ+LL+  +L LYF G  +
Sbjct: 184 IQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIV 243

Query: 269 VKLTG 273
           +KL  
Sbjct: 244 LKLLK 248

Length = 249

>gnl|CDD|233202 TIGR00945, tatC, Twin arginine targeting (Tat) protein translocase TatC

 Score =  266 bits (681), Expect = 4e-90
 Identities = 122/216 (56%), Positives = 164/216 (75%), Gaps = 1/216 (0%)

Query: 47  IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTT 106
           +F+HLEELR+R+ +S++A   A   CF +SK +I  L+APV + GV F+  +P E FFT 
Sbjct: 1   LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTY 60

Query: 107 LKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTP 166
           +K+S   G++L SPVILY+I AF+LPGL   ERR L P++LGS +LF AG+AF+Y+VL P
Sbjct: 61  IKLSLIVGIILSSPVILYQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFP 120

Query: 167 AALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLS 226
           AALNF + Y   VVE L SIDQYFEFVL L+FS G++FQVPV+Q+LLG++G+VT +Q+ S
Sbjct: 121 AALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQVPVLQVLLGRLGIVTYEQLRS 180

Query: 227 IWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 262
             RYV+VGA +  A+LTP  DP++Q+LLA PLL LY
Sbjct: 181 KRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY 215

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409) [Protein fate, Protein and peptide secretion and trafficking]. Length = 215

>gnl|CDD|223876 COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]

 Score =  220 bits (563), Expect = 9e-72
 Identities = 86/240 (35%), Positives = 143/240 (59%), Gaps = 7/240 (2%)

Query: 41  DDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE-----GVRFL 95
            ++   + +HL ELR+R+   ++A   A L  F ++K+L   L AP+         V  +
Sbjct: 4   VEELQPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELI 63

Query: 96  QLAPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYA 155
             +P E FFT +K++ + GLLL  PVILY++ AF+ PGL + ERR + P+++ S VLF  
Sbjct: 64  ATSPTEPFFTYIKLALFAGLLLALPVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLL 123

Query: 156 GIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLG 214
           G AF+Y+V+ P    F +++A    V    SI +Y  FVL L+ + G++F++PV+ +LL 
Sbjct: 124 GAAFAYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSFVLTLLLAFGVAFELPVVIVLLT 183

Query: 215 QVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           ++G+VT + +    RY +V A + AA++TP  D ++Q+LLA PL+ LY     + +   +
Sbjct: 184 RLGIVTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFVEK 242

Length = 255

>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein (TatC)

 Score =  203 bits (518), Expect = 2e-65
 Identities = 90/213 (42%), Positives = 137/213 (64%), Gaps = 4/213 (1%)

Query: 48  FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFF 104
            +HLEELR+R+  S++A     + C+ +S+E+I+FL AP+ +      + +  +P E FF
Sbjct: 1   LEHLEELRKRLIYSLIAFILGFIICYFFSEEIILFLLAPLLNALPPNSKLIYTSPTEAFF 60

Query: 105 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 164
           T LK+S + GL+L  P+ILY+I AF+ PGL + ERRFL P V  S +LF  G AF+Y+V+
Sbjct: 61  TYLKLSLFAGLILALPIILYQIWAFIAPGLYKNERRFLLPFVFASFLLFLLGAAFAYFVV 120

Query: 165 TPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQM 224
            P AL F + +    +E   SI +Y  FVL L+ + GL F++PVI +LL ++G+VT + +
Sbjct: 121 LPIALKFLLGFGPEGIEPQPSISEYLSFVLRLLLAFGLLFELPVILVLLAKLGIVTPEFL 180

Query: 225 LSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP 257
               RY +V   I AA++TP  D ++Q+LLA P
Sbjct: 181 RKNRRYAIVLIFIIAAIITPP-DVISQLLLAIP 212

The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon. Length = 212

>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system subunit TatC; Provisional

 Score =  127 bits (320), Expect = 2e-35
 Identities = 76/216 (35%), Positives = 122/216 (56%), Gaps = 4/216 (1%)

Query: 50  HLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSE---GVRFLQLAPGEFFFTT 106
           HL ELR+R+   ++AV    L    ++ ++   + AP+  +   G   +       FFT 
Sbjct: 12  HLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTP 71

Query: 107 LKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTP 166
           +K++    L+L +PVILY++ AF+ P L + ERR + P+++ SS+LFY G+AF+Y+V+ P
Sbjct: 72  IKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFP 131

Query: 167 AALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLS 226
            A  F    A   V+    I  Y  FV+ L  + G+SF+VPV  +LL  +G+ T + +  
Sbjct: 132 LAFGFLAKTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGVTTPEDLRK 191

Query: 227 IWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY 262
              YV+VGA +   +LTP  D  +Q LLA P+  L+
Sbjct: 192 KRPYVLVGAFVVGMLLTPP-DVFSQTLLAIPMYCLF 226

Length = 258

>gnl|CDD|162597 TIGR01912, TatC-Arch, Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade

 Score =  114 bits (286), Expect = 2e-30
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 50  HLEELRQRIFVS--VLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEF 102
            L   R  + +    +  G+ +     ++  +I  L   +            +  +P   
Sbjct: 5   ALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAA 64

Query: 103 FFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYW 162
               +K + + GLLL SPV+ YE   F+ P L   ERR +  + + +  LF  G  F+YW
Sbjct: 65  LELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYW 124

Query: 163 VLTPAALNFFVNYAEGVVESL-WSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGLVTS 221
           V+ P        +A  +  S    I +Y  F L L+ S GL+F+ PV+ + L ++G+V++
Sbjct: 125 VIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLILSFGLAFETPVVLVFLTRLGVVSA 184

Query: 222 DQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVK 270
             ++  WR +++  ++  AV+TP  D V+ +LLA PL+ LY     + K
Sbjct: 185 STLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISK 233

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409). Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
CHL00182	249	tatC Sec-independent translocase component C; Prov	100.0
PRK10921	258	twin-arginine protein translocation system subunit	100.0
COG0805	255	TatC Sec-independent protein secretion pathway com	100.0
TIGR01912	237	TatC-Arch Twin arginine targeting (Tat) protein tr	100.0
TIGR00945	215	tatC Twin arginine targeting (Tat) protein translo	100.0
PF00902	215	TatC: Sec-independent protein translocase protein	100.0
PF09586	843	YfhO: Bacterial membrane protein YfhO; InterPro: I	80.44

>CHL00182 tatC Sec-independent translocase component C; Provisional

Probab=100.00  E-value=2.2e-63  Score=449.63  Aligned_cols=236  Identities=53%  Similarity=0.976  Sum_probs=226.4

Q ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeEEcCcchHHHHHHHHHHHHHHH
Q 023968           37 ELLPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLL  116 (274)
Q Consensus        37 ~~~~~~~~m~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~~~~~li~t~~~E~f~~~lklsl~~~~~  116 (274)
                      |.+++|+|||+.||++|||+|+++++++++++++++|++++++++++.+|..  +.++++|+++|+|++++|+|+++|+.
T Consensus        14 ~~~~~~~~~~l~~HL~ELR~Rli~~li~~~i~~~v~~~~~~~l~~~l~~p~~--~~~li~t~~~E~f~~~ikls~~~g~~   91 (249)
T CHL00182         14 DIEDPDLEMPLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK--GIKFLQLSPGEYFFSSIKISFYTGLL   91 (249)
T ss_pred             ccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCceEEcCchHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999999999999999999999999999874  34699999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcHHHHHHHHHHH
Q 023968          117 LGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVL  196 (274)
Q Consensus       117 ~~~P~i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~i~~~~~i~~Y~~f~~~~  196 (274)
                      +++|+++||+|+|++||||+||||+.++++..+.++|.+|++|+|++++|.+++|+.+++.+++++++++++|+++++++
T Consensus        92 ~a~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f~~~~~~~~~~i~~Yl~f~~~~  171 (249)
T CHL00182         92 ISSPFIIYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVL  171 (249)
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023968          197 MFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  274 (274)
Q Consensus       197 ~l~fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v~~  274 (274)
                      ++++|++||+|++++++++.|++|+++++|+||+++++++++||++|||||++||+++|+||+++||+|++++|++++
T Consensus       172 ~l~fGl~FelPvi~~~L~~~givs~~~L~~~Rr~~~v~~~i~aAiiTP~pD~~sqi~laiPl~lLYEisI~i~~~~~~  249 (249)
T CHL00182        172 FFSTGLAFQIPIIQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPSTDPLTQLLLSLAILLLYFSGVIVLKLLKK  249 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcCHHHHHhhCchHhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999889999999999999999999999999864

>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional

Probab=100.00  E-value=3.1e-62  Score=444.36  Aligned_cols=232  Identities=33%  Similarity=0.609  Sum_probs=224.1

Q ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeEEcCcchHHHHHHHHHHHHHHHHH
Q 023968           42 DKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLG  118 (274)
Q Consensus        42 ~~~m~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~---~~~~li~t~~~E~f~~~lklsl~~~~~~~  118 (274)
                      |++||+.||++|||+|+++++++++++++++|++++++++++.+|..+   ++.++++|+++|+|++++|+|+++|++++
T Consensus         4 ~~~~~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~l~~~l~~pl~~~~~~~~~li~t~~~e~f~~~lk~sl~~g~~la   83 (258)
T PRK10921          4 EDTQPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSLILS   83 (258)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeecCchHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999742   35689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcHHHHHHHHHHHHH
Q 023968          119 SPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMF  198 (274)
Q Consensus       119 ~P~i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~i~~~~~i~~Y~~f~~~~~l  198 (274)
                      +|+++||+|+|++||||+||||+.++++..+.++|++|+.|+|++++|.+++|+.+++.+++++.+++++|++|++++++
T Consensus        84 ~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~~~l  163 (258)
T PRK10921         84 APVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMALFM  163 (258)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023968          199 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  274 (274)
Q Consensus       199 ~fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v~~  274 (274)
                      ++|++||+|++++++++.|++++++++|+||+++++++++||++|| ||++||+++|+||++|||+|++++++.+|
T Consensus       164 ~fGl~FelPli~~~L~~~giv~~~~l~~~Rr~~~v~~~iiaAiiTP-pD~isq~llaiPl~lLYEisI~i~~~~~~  238 (258)
T PRK10921        164 AFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTP-PDVFSQTLLAIPMYCLFEIGVFFSRFYVG  238 (258)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHhcCcHHhHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999 79999999999999999999999998654

>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.6e-60  Score=427.09  Aligned_cols=235  Identities=37%  Similarity=0.674  Sum_probs=225.2

Q ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcccc-c---cC-ceeEEcCcchHHHHHHHHHHHH
Q 023968           39 LPDDKEMSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVK-S---EG-VRFLQLAPGEFFFTTLKVSGYC  113 (274)
Q Consensus        39 ~~~~~~m~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~-~---~~-~~li~t~~~E~f~~~lklsl~~  113 (274)
                      +++|+++|+.||+.|||+|+.++++++++++.+++++.+++..++.+|+. .   ++ .++++++|+|++++++|+|++.
T Consensus         2 ~~~~~~~pl~~hL~eLr~rL~~~~~~~~v~f~~~~~~~~~l~~~l~~p~~~~~l~~~~~~li~~~p~e~~~~~ik~a~~~   81 (255)
T COG0805           2 SMVEELQPLIEHLIELRKRLLRILIAFIVAFLILFYFAKDLYELLVAPLTYAQLPEGAVELIATSPTEPFFTYIKLALFA   81 (255)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccceeEEcCcHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999975 2   22 4799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchhhhhcHHHHHHH
Q 023968          114 GLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA-EGVVESLWSIDQYFEF  192 (274)
Q Consensus       114 ~~~~~~P~i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~-~~~i~~~~~i~~Y~~f  192 (274)
                      |+.+++|+++||+|+|++||||+||||..++++..+.+||++|++|+|++++|.+++|+.+++ ++++++.+++++|++|
T Consensus        82 gl~~a~P~i~yq~w~FiaPGLy~~Err~~~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~~~~~~~~~~~~~i~~y~~f  161 (255)
T COG0805          82 GLLLALPVILYQLWAFIAPGLYKHERRLILPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLSFAAPDGVSPALSISKYLSF  161 (255)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeeeecHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998 5689999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023968          193 VLVLMFSTGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLT  272 (274)
Q Consensus       193 ~~~~~l~fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v  272 (274)
                      +++++++||++||+|+++++|++.|++++++++++|||++++++++||++|| ||++||+++|+||++|||+|++++|++
T Consensus       162 ~l~l~~~FGv~FElPvv~~~L~~~Giv~~~~L~~~rr~~iv~~fViaaviTP-pd~~sq~llaiPl~lLyElsi~~~r~~  240 (255)
T COG0805         162 VLTLLLAFGVAFELPVVIVLLTRLGIVTPETLKKKRRYAIVAAFVIAAIITP-PDVLSQILLAIPLILLYELSILISRFV  240 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHcCCeeeehHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999 899999999999999999999999998


Q ss_pred             cC
Q 023968          273 GR  274 (274)
Q Consensus       273 ~~  274 (274)
                      +|
T Consensus       241 ~~  242 (255)
T COG0805         241 EK  242 (255)
T ss_pred             hc
Confidence            75

>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade

Probab=100.00  E-value=1.1e-59  Score=423.05  Aligned_cols=228  Identities=27%  Similarity=0.478  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHhcccccc-----CceeEEcCcchHHHHHHHHHHHHHHHHHH
Q 023968           47 IFDHLEELRQRIFVSVLAVGAAILGCF--AYSKELIMFLEAPVKSE-----GVRFLQLAPGEFFFTTLKVSGYCGLLLGS  119 (274)
Q Consensus        47 l~~HL~ELR~Rli~~li~~~i~~~~~~--~~~~~li~~l~~p~~~~-----~~~li~t~~~E~f~~~lklsl~~~~~~~~  119 (274)
                      +.+|++|||+|+++++++++++++++|  ++++++++++.+|+.+.     +.++++++++|+|++++|+|++.|+++++
T Consensus         2 ~~~Hl~ELR~Rli~~~i~~~~~~~~~~~~~~~~~i~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~g~~~~~   81 (237)
T TIGR01912         2 LLIALATFRLILLLVALAIVTGSVLGWLTIFTPFIIAALRESILPLLAYHVIATLIAPSPFAALELRIKSAFFIGLLLAS   81 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCceeEEcCchHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999  99999999999986432     34799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhhhhcHHHHHHHHHHHHH
Q 023968          120 PVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAE-GVVESLWSIDQYFEFVLVLMF  198 (274)
Q Consensus       120 P~i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~-~~i~~~~~i~~Y~~f~~~~~l  198 (274)
                      |+++||+|+|++||||+||||..++++..+.++|++|+.|+|++++|.+++|+.+++. .++++.+++++|+++++++++
T Consensus        82 P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~f~~~f~~~~~~~~~~~i~~Y~~f~~~~~~  161 (237)
T TIGR01912        82 PVLAYEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALFAYWVIFPLIFQILFEFASPLGLSAIMDIRKYTSFALKLIL  161 (237)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccceeecHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999975 468999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023968          199 STGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  274 (274)
Q Consensus       199 ~fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v~~  274 (274)
                      ++|++||+|+++.++++.|++|+++++|+||+++++++++||++|||||++||+++|+||+++||+|++++|+.+|
T Consensus       162 ~fGl~FelPvv~~~L~~~giv~~~~l~~~rr~~~v~~~i~aAiiTP~pD~~sq~~laiPl~~LYeisi~i~~~~~k  237 (237)
T TIGR01912       162 SFGLAFETPVVLVFLTRLGVVSASTLVDYWRVIILVVLVFGAVITPDPDVVSMILLAIPLIALYGLALVISKRVEK  237 (237)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999999999999999999999999999999999999889999999999999999999999999876

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).

>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC

Probab=100.00  E-value=6.4e-58  Score=406.24  Aligned_cols=215  Identities=57%  Similarity=0.957  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccCceeEEcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023968           47 IFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEI  126 (274)
Q Consensus        47 l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~~~~~li~t~~~E~f~~~lklsl~~~~~~~~P~i~yql  126 (274)
                      +.||++|||+|++|++++++++++++|++++++++++.+|..+.+.++++|+|+|+|++++|+|+++|+.+++|+++||+
T Consensus         1 l~~Hl~ELR~Rl~~~~i~~~~~~~i~~~~~~~l~~~l~~p~~~~~~~li~t~~~e~f~~~lk~s~~~g~~~~~P~i~yqi   80 (215)
T TIGR00945         1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPVLALGVTFIATSPTEPFFTYIKLSLIVGIILSSPVILYQI   80 (215)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEecCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999998766788999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 023968          127 IAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQV  206 (274)
Q Consensus       127 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~i~~~~~i~~Y~~f~~~~~l~fGl~Fql  206 (274)
                      |+|++||||+||||+.++++..+.++|.+|++|+|++++|.+++|+.+++.+++++.+++++|++++.++++++|++||+
T Consensus        81 w~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~~~~~~~~~~~~~~i~~y~~f~~~~~l~fGl~Fql  160 (215)
T TIGR00945        81 WAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTYGADVVEILLSIDQYFEFVLKLLFSFGVAFQV  160 (215)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 023968          207 PVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLY  262 (274)
Q Consensus       207 Pli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~Ly  262 (274)
                      |+++.++++.|++|+++++|+||+++++++++||++|| ||++||+++++||++||
T Consensus       161 Pli~~~l~~~giv~~~~l~~~Rr~~~~~~~i~aa~iTP-pD~~sq~~la~Pl~~LY  215 (215)
T TIGR00945       161 PVLQVLLGRLGIVTYEQLRSKRRYVIVGAFVIGAILTP-PDPLSQILLAIPLLLLY  215 (215)
T ss_pred             HHHHHHHHHcCCCCHHHHHhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999 79999999999999987

This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).

>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif

Probab=100.00  E-value=5.5e-54  Score=380.77  Aligned_cols=209  Identities=41%  Similarity=0.728  Sum_probs=201.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccccC-----ceeEEcCcchHHHHHHHHHHHHHHHHHHHHH
Q 023968           48 FDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKSEG-----VRFLQLAPGEFFFTTLKVSGYCGLLLGSPVI  122 (274)
Q Consensus        48 ~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~~~-----~~li~t~~~E~f~~~lklsl~~~~~~~~P~i  122 (274)
                      +||++|||+|++|++++++++++++|++++++++++.+|+.+..     .++++|+++|+|++++|+|+++|+++++|++
T Consensus         1 ~~Hl~ELr~Rl~~~li~~~i~~~v~~~~~~~l~~~l~~p~~~~~~~~~~~~li~~~~~e~f~~~lk~s~~~~~~~~~P~~   80 (215)
T PF00902_consen    1 WEHLEELRYRLIYSLISFIIAFIVCFWFSEELIYFLIKPLPQILPSQNSVKLIFTSPTEAFFTYLKLSFFLGLIISLPYI   80 (215)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhccccccceEEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999987532     4899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hhhhhcHHHHHHHHHHHHHHHH
Q 023968          123 LYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGV-VESLWSIDQYFEFVLVLMFSTG  201 (274)
Q Consensus       123 ~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~-i~~~~~i~~Y~~f~~~~~l~fG  201 (274)
                      +||+|+|++||||+||||+.+++...+.++|++|+.++|++++|.+++|+++++.++ +++++++++|++++.++++++|
T Consensus        81 ~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~f~~~~~~~~~~~i~~y~~f~~~~~~~~g  160 (215)
T PF00902_consen   81 LYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLSFSPTSGIQPEPSISSYLNFVIQFLLIFG  160 (215)
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998765 4999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 023968          202 LSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAP  257 (274)
Q Consensus       202 l~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaip  257 (274)
                      ++||+|+++.++++.|++|+++++|+||+++++++++||++|| ||++||+++++|
T Consensus       161 l~FqlPli~~~L~~~giv~~~~l~~~rr~~~~~~~iiaa~itP-pD~~sql~l~iP  215 (215)
T PF00902_consen  161 LIFQLPLIMFFLVRLGIVSPKFLRKYRRYAYFGIFIIAAFITP-PDPISQLLLAIP  215 (215)
T ss_pred             HHHHHHHHHHHHHHcCCcCHHHHHHhhhHHHHHHHHHHHHhcC-chHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999 899999999987

This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].

>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []

Probab=80.44  E-value=31  Score=36.31  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023968          105 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYA  176 (274)
Q Consensus       105 ~~lklsl~~~~~~~~P~i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~  176 (274)
                      ..+-.+++.|.+.++-..+|-+++++.    ++.|+..+..... .+-.++|+..+=+.++|.+..++.+-.
T Consensus       177 l~~i~nfYf~ym~~if~~iY~~~r~~~----~~~k~~~~~~~~~-~~~~ilg~~lsa~~llP~~~~~l~~~r  243 (843)
T PF09586_consen  177 LALISNFYFAYMICIFLVIYFLIRYFF----KNWKNFFKKILRF-IGSSILGVGLSAFLLLPTILSLLQSKR  243 (843)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            334556777777777778887777762    5555555554443 444667888888899999999887654

Some members of this family have been annotated as putative ABC transporter permease proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
4b4a_A	249	Structure Of The Tatc Core Of The Twin Arginine Pro		7e-25

>pdb|4B4A|A Chain A, Structure Of The Tatc Core Of The Twin Arginine Protein Translocation System Length = 249

Iteration: 1
 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 10/232 (4%)
Query: 49  DHLEELRQRIFVSVLA--VGAAILGCFAYSKELIMFLEAPVKSE--GVRFLQLAPGEFFF 104
           +HL ELR R+ +S++A  +G+ I   F ++K +   L+ P+      V  + L+P E  F
Sbjct: 5   EHLRELRYRLIISIIAFLIGSGI--AFYFAKYVFEILKEPILKSYPEVELITLSPTEPLF 62
Query: 105 TTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVL 164
             +K+S   G ++ SPVILY+   F+ P L   E+R   P++LGS +LF  G  F+Y+++
Sbjct: 63  ILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFXLGALFAYFIV 122
Query: 165 TPAALNFF--VNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIXXXXXXXXXXTSD 222
            P AL F   + + + +     S+D Y  FVL L+ + G++F+ P++          T +
Sbjct: 123 LPLALKFLLGLGFTQLLATPYLSVDXYISFVLKLVVAFGIAFEXPIVLYVLQKAGVITPE 182
Query: 223 QMLSIWRYXXXXXXXXXXXLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR 274
           Q+ S  +Y           + P  D  TQ+L A PLL LY    ++ KL  R
Sbjct: 183 QLASFRKYFIVIAFVIGAIIAP--DVSTQVLXAIPLLLLYEISIFLGKLATR 232

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 43/256 (16%), Positives = 81/256 (31%), Gaps = 64/256 (25%)

Query: 1   MIENL----DVTDIPRDETLEN--LNQDGVESPLYNFL----YPDKELLPDD----KEMS 46
           M++ L    D     R +   N  L    +++ L   L    Y +  L+  +    K  +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 47  IFDHLEELRQRIFV-----SVL-AVGAAILGCFAYSKELIMFLEAPVKSEGV--RFLQLA 98
            F+    L  +I +      V   + AA     +     +       + + +  ++L   
Sbjct: 261 AFN----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCR 314

Query: 99  PGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPGLTRAER-RFLGPIVLGSSVLFYAGI 157
           P +     L       +L  +P  L  I   +  GL   +  + +    L +       I
Sbjct: 315 PQD-----LPRE----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------I 359

Query: 158 AFSYWVLTPA-------ALNFF---VNYAEGVVESLW--SIDQYFEFVLVLMFSTGL--- 202
             S  VL PA        L+ F    +    ++  +W   I      V+  +    L   
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 203 -----SFQVPVIQLLL 213
                +  +P I L L
Sbjct: 420 QPKESTISIPSIYLEL 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
4b4a_A	249	TATC, SEC-independent protein translocase protein	100.0

>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}

Probab=100.00  E-value=2.3e-62  Score=441.85  Aligned_cols=227  Identities=34%  Similarity=0.605  Sum_probs=214.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccccc---cCceeEEcCcchHHHHHHHHHHHHHHHHHHHH
Q 023968           45 MSIFDHLEELRQRIFVSVLAVGAAILGCFAYSKELIMFLEAPVKS---EGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPV  121 (274)
Q Consensus        45 m~l~~HL~ELR~Rli~~li~~~i~~~~~~~~~~~li~~l~~p~~~---~~~~li~t~~~E~f~~~lklsl~~~~~~~~P~  121 (274)
                      ||+.||++|||+|+++++++++++++++|++++++++++.+|..+   ++ ++++|+|+|+|++++|+|++.|+++++|+
T Consensus         1 m~l~~HL~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~~P~~~~~~~~-~li~t~~~e~f~~~lkvs~~~g~~~a~P~   79 (249)
T 4b4a_A            1 MPLTEHLRELRYRLIISIIAFLIGSGIAFYFAKYVFEILKEPILKSYPEV-ELITLSPTEPLFILIKISLAVGFIIASPV   79 (249)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTS-CEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-CeeecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999763   23 89999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh--cHHHHHHHHHHHHHH
Q 023968          122 ILYEIIAFVLPGLTRAERRFLGPIVLGSSVLFYAGIAFSYWVLTPAALNFFVNYAEGVVESLW--SIDQYFEFVLVLMFS  199 (274)
Q Consensus       122 i~yqlw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~y~~ilP~~~~F~~~f~~~~i~~~~--~i~~Y~~f~~~~~l~  199 (274)
                      ++||+|+|++||||+||||+.++++..+.++|.+|++|||++++|.+++|+.+++++++++++  ++++|++++++++++
T Consensus        80 ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~  159 (249)
T 4b4a_A           80 ILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMYISFVLKLVVA  159 (249)
T ss_dssp             HHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988888888  999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHhchhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023968          200 TGLSFQVPVIQLLLGQVGLVTSDQMLSIWRYVVVGAVIAAAVLTPSTDPVTQMLLAAPLLGLYFGGAWMVKLTGR  274 (274)
Q Consensus       200 fGl~FqlPli~~~L~~~giv~~~~l~~~RR~~~v~~~iiaAiiTP~pDiisqillaipl~~LyEi~i~i~~~v~~  274 (274)
                      +|++||+|+++++|++.|++|+++++|+|||++++++++||++||  |++||+++|+||++|||+|++++|+++|
T Consensus       160 fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~llaiPl~lLYEisi~i~~~~~~  232 (249)
T 4b4a_A          160 FGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVLMAIPLLLLYEISIFLGKLATR  232 (249)
T ss_dssp             HHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHTCCC---
T ss_pred             HHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999  9999999999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00