Citrus Sinensis ID: 023970

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ
ccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHccccccHHHHHccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccHHHHHHHHHHHccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccc
ccccccccccccccHHHHHHHHHcccccccEEEEEccccccccccccccccccHHHHccccHHHHHHHccHHHHHHHccccccccEEEcccHHHHHHHcccccccccccccccHHEEHHHcccccccccHHHHHHHHcccccccHHHccccHHHHHHHHHHHcccHHHccEEHccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccEEEEccc
mkkpenhgvpyslteEFTSVYRMHAllpdtlnlrdidaqpgpnksppsaekvpmenlvghkgekALSAIGFEKRIVSMGHQacgalelwnyplwlrdlipqntdgtdrpdhvDLAALEVYRDRERKAARYNEFRRALLLIpiskwedlteDKEAIEVLNEvygddveeLDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADrfftssfneetytkkglewvNTTESLKDVLHRHYPEitekwmnstsafsvwdsppnshnpiplylrvpq
mkkpenhgvpysLTEEFTSVYRMHALLPDTLNLRDIDAqpgpnksppsaekVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQntdgtdrpdhVDLAALEVYRDRERKAARYNEFRRALLlipiskwedlteDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFftssfneetytkkglewvnTTESLKDVLHRHYPEITEKWMNSTSAFSvwdsppnshnpiplylrvpq
MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ
***********SLTEEFTSVYRMHALLPDTLNL*******************************ALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVW******************
*KKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRV**
********VPYSLTEEFTSVYRMHALLPDTLNLRDIDAQ***********KVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ
*****NHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ
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MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPEITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9SGH6639 Alpha-dioxygenase 1 OS=Ar yes no 0.996 0.427 0.743 1e-122
Q9C9U3631 Alpha-dioxygenase 2 OS=Ar no no 0.989 0.429 0.660 1e-106
Q6TMK4531 Peroxinectin A OS=Dictyos yes no 0.346 0.178 0.322 3e-08
P27607603 Prostaglandin G/H synthas yes no 0.770 0.349 0.239 1e-06
Q9UUS2 1165 Linoleate diol synthase O N/A no 0.795 0.187 0.236 0.0003
P35354604 Prostaglandin G/H synthas yes no 0.489 0.221 0.232 0.0003
A1KZ92 1463 Peroxidasin-like protein no no 0.350 0.065 0.31 0.0004
P35355604 Prostaglandin G/H synthas yes no 0.492 0.223 0.263 0.0006
P22437602 Prostaglandin G/H synthas yes no 0.248 0.112 0.357 0.0008
O97554606 Prostaglandin G/H synthas yes no 0.489 0.221 0.232 0.0009
>sp|Q9SGH6|DOX1_ARATH Alpha-dioxygenase 1 OS=Arabidopsis thaliana GN=DOX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/273 (74%), Positives = 237/273 (86%)

Query: 1   MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
           MKKP+NHGVPYSLTE+FTSVYRMH+LLPD L++ DID  PG NKS P  +++ M +L+G 
Sbjct: 366 MKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGR 425

Query: 61  KGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVY 120
           KGE+ +S IGF K +VSMGHQA GALEL NYP+WLRD++P + +G  RPDHVDLAALE+Y
Sbjct: 426 KGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIY 485

Query: 121 RDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKK 180
           RDRER   RYNEFRR++ +IPI+KWEDLTED+EAIEVL++VY  DVEELDL VGLMAEKK
Sbjct: 486 RDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKK 545

Query: 181 IKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240
           IKGFAISETAF IFL+MA+RRLEADRFFTS FNE  YTKKGLEWVNTTESLKDV+ RHYP
Sbjct: 546 IKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYP 605

Query: 241 EITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVP 273
           ++T+KWMNS SAFSVWDSPP + NPIPLYLR+P
Sbjct: 606 DMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIP 638
Alpha-dioxygenase that catalyzes the primary oxygenation of fatty acids into oxylipins. Mediates a protection against oxidative stress and cell death, probably by generating some lipid-derived molecules. Promotes local and systemic plant defense in a salicylic acid (SA)-dependent manner, including the establishment of systemic acquired resistance (SAR) in response to incompatible interaction. Involved in a negative regulation of abscisic acid (ABA)-mediated signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: -
>sp|Q9C9U3|DOX2_ARATH Alpha-dioxygenase 2 OS=Arabidopsis thaliana GN=DOX2 PE=2 SV=1 Back     alignment and function description
>sp|Q6TMK4|POXA_DICDI Peroxinectin A OS=Dictyostelium discoideum GN=poxA PE=2 SV=1 Back     alignment and function description
>sp|P27607|PGH2_CHICK Prostaglandin G/H synthase 2 OS=Gallus gallus GN=PTGS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUS2|LIDS_GAEGR Linoleate diol synthase OS=Gaeumannomyces graminis var. graminis PE=1 SV=3 Back     alignment and function description
>sp|P35354|PGH2_HUMAN Prostaglandin G/H synthase 2 OS=Homo sapiens GN=PTGS2 PE=1 SV=2 Back     alignment and function description
>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3 Back     alignment and function description
>sp|P35355|PGH2_RAT Prostaglandin G/H synthase 2 OS=Rattus norvegicus GN=Ptgs2 PE=1 SV=1 Back     alignment and function description
>sp|P22437|PGH1_MOUSE Prostaglandin G/H synthase 1 OS=Mus musculus GN=Ptgs1 PE=2 SV=1 Back     alignment and function description
>sp|O97554|PGH1_RABIT Prostaglandin G/H synthase 1 OS=Oryctolagus cuniculus GN=PTGS1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
356571545 643 PREDICTED: prostaglandin G/H synthase 2- 0.996 0.424 0.820 1e-133
3550519 643 oxygenase [Nicotiana tabacum] 0.996 0.424 0.813 1e-132
356550048 643 PREDICTED: prostaglandin G/H synthase 1- 0.996 0.424 0.813 1e-132
12539609 643 pathogen-inducible alpha-dioxygenase [Ni 0.996 0.424 0.809 1e-131
255552668 508 oxidoreductase, putative [Ricinus commun 0.996 0.537 0.805 1e-130
225452532 638 PREDICTED: prostaglandin G/H synthase 2- 1.0 0.429 0.799 1e-130
296087704 612 unnamed protein product [Vitis vinifera] 1.0 0.447 0.799 1e-130
356571555 643 PREDICTED: prostaglandin G/H synthase 2- 0.996 0.424 0.783 1e-130
296087701 638 unnamed protein product [Vitis vinifera] 0.996 0.427 0.802 1e-129
225452530 642 PREDICTED: peroxidase [Vitis vinifera] 0.996 0.425 0.802 1e-129
>gi|356571545|ref|XP_003553937.1| PREDICTED: prostaglandin G/H synthase 2-like [Glycine max] Back     alignment and taxonomy information
 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 224/273 (82%), Positives = 249/273 (91%)

Query: 2   KKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHK 61
           K+PENHGV YSLTEEF +VYRMH+LLPD L LRDI A PGPNKSPP  +++PM+NL+G +
Sbjct: 371 KRPENHGVTYSLTEEFVTVYRMHSLLPDNLQLRDISATPGPNKSPPLVKEIPMKNLIGLQ 430

Query: 62  GEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYR 121
           GEK LS IG  +++VSMGHQACGALELWNYP WLRDL+PQN DGTDRPDHVDLAALE+YR
Sbjct: 431 GEKTLSEIGVARQLVSMGHQACGALELWNYPEWLRDLVPQNIDGTDRPDHVDLAALEIYR 490

Query: 122 DRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKI 181
           DRER  ARYN+FRRALLLIPISKWEDLT+DKEAI+VL EVYGDDVEELD+ VGLMAEKKI
Sbjct: 491 DRERSVARYNQFRRALLLIPISKWEDLTDDKEAIQVLEEVYGDDVEELDVLVGLMAEKKI 550

Query: 182 KGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPE 241
           KGFAISETAFVIFLLMA+RRLEADRFFTS+FNEETYTKKGLEWVNTTESLKDV+ RHYPE
Sbjct: 551 KGFAISETAFVIFLLMATRRLEADRFFTSNFNEETYTKKGLEWVNTTESLKDVIDRHYPE 610

Query: 242 ITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ 274
           ++ KW+NS+SAFSVWDSPPNS N IPLYLRVP 
Sbjct: 611 MSHKWLNSSSAFSVWDSPPNSQNHIPLYLRVPH 643

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|3550519|emb|CAA07589.1| oxygenase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356550048|ref|XP_003543402.1| PREDICTED: prostaglandin G/H synthase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|12539609|gb|AAG59584.1|AF229926_1 pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|255552668|ref|XP_002517377.1| oxidoreductase, putative [Ricinus communis] gi|223543388|gb|EEF44919.1| oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225452532|ref|XP_002275161.1| PREDICTED: prostaglandin G/H synthase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087704|emb|CBI34960.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356571555|ref|XP_003553942.1| PREDICTED: prostaglandin G/H synthase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|296087701|emb|CBI34957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452530|ref|XP_002279884.1| PREDICTED: peroxidase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2096697639 DOX1 [Arabidopsis thaliana (ta 0.996 0.427 0.743 5.9e-112
UNIPROTKB|P27607603 PTGS2 "Prostaglandin G/H synth 0.470 0.213 0.283 6.1e-07
DICTYBASE|DDB_G0277275531 poxA "animal heme peroxidase f 0.350 0.180 0.319 1.2e-06
FB|FBgn0032685 1394 CG10211 [Drosophila melanogast 0.562 0.110 0.287 3.4e-05
ZFIN|ZDB-GENE-020530-2601 ptgs2a "prostaglandin-endopero 0.470 0.214 0.268 4.3e-05
WB|WBGene00008627718 F09F3.5 [Caenorhabditis elegan 0.445 0.169 0.286 5.5e-05
WB|WBGene000115301490 T06D8.10 [Caenorhabditis elega 0.386 0.071 0.284 0.0001
UNIPROTKB|P35354604 PTGS2 "Prostaglandin G/H synth 0.339 0.153 0.273 0.00014
UNIPROTKB|P79208603 PTGS2 "Prostaglandin G/H synth 0.281 0.127 0.337 0.00017
ZFIN|ZDB-GENE-091117-14 1528 duox "dual oxidase" [Danio rer 0.543 0.097 0.270 0.00018
TAIR|locus:2096697 DOX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 203/273 (74%), Positives = 237/273 (86%)

Query:     1 MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
             MKKP+NHGVPYSLTE+FTSVYRMH+LLPD L++ DID  PG NKS P  +++ M +L+G 
Sbjct:   366 MKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGR 425

Query:    61 KGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVY 120
             KGE+ +S IGF K +VSMGHQA GALEL NYP+WLRD++P + +G  RPDHVDLAALE+Y
Sbjct:   426 KGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIY 485

Query:   121 RDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKK 180
             RDRER   RYNEFRR++ +IPI+KWEDLTED+EAIEVL++VY  DVEELDL VGLMAEKK
Sbjct:   486 RDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKK 545

Query:   181 IKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240
             IKGFAISETAF IFL+MA+RRLEADRFFTS FNE  YTKKGLEWVNTTESLKDV+ RHYP
Sbjct:   546 IKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYP 605

Query:   241 EITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVP 273
             ++T+KWMNS SAFSVWDSPP + NPIPLYLR+P
Sbjct:   606 DMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIP 638
GO:0004601 "peroxidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0020037 "heme binding" evidence=IEA
GO:0051707 "response to other organism" evidence=ISS
GO:0001561 "fatty acid alpha-oxidation" evidence=IDA
GO:0016165 "lipoxygenase activity" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IMP
GO:0008219 "cell death" evidence=IEP
GO:0034614 "cellular response to reactive oxygen species" evidence=IEP
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0071446 "cellular response to salicylic acid stimulus" evidence=IEP
GO:0071732 "cellular response to nitric oxide" evidence=IEP
GO:0006629 "lipid metabolic process" evidence=TAS
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009627 "systemic acquired resistance" evidence=IMP
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
UNIPROTKB|P27607 PTGS2 "Prostaglandin G/H synthase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277275 poxA "animal heme peroxidase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0032685 CG10211 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020530-2 ptgs2a "prostaglandin-endoperoxide synthase 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00008627 F09F3.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00011530 T06D8.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P35354 PTGS2 "Prostaglandin G/H synthase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P79208 PTGS2 "Prostaglandin G/H synthase 2" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091117-14 duox "dual oxidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SGH6DOX1_ARATH1, ., 1, 4, ., 9, 9, ., -0.74350.99630.4272yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.11.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020785001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (642 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035067001
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (920 aa)
     •  0.899
LOXO
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (916 aa)
     •  0.899
GSVIVG00025319001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa)
     •  0.899
GSVIVG00024676001
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (544 aa)
     •  0.899
GSVIVG00024673001
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (819 aa)
     •  0.899
LOXA
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (901 aa)
     •  0.899
Lox
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (859 aa)
     •  0.899
GSVIVG00022800001
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (864 aa)
     •  0.899
GSVIVG00019960001
RecName- Full=Lipoxygenase; EC=1.13.11.12;; Plant lipoxygenase may be involved in a number of d [...] (876 aa)
     •  0.899
GSVIVG00019084001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (488 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02283633 PLN02283, PLN02283, alpha-dioxygenase 0.0
cd09818484 cd09818, PIOX_like, Animal heme oxidases similar t 1e-114
pfam03098521 pfam03098, An_peroxidase, Animal haem peroxidase 5e-63
cd05396370 cd05396, An_peroxidase_like, Animal heme peroxidas 5e-50
cd09816490 cd09816, prostaglandin_endoperoxide_synthase, Anim 1e-17
cd09822420 cd09822, peroxinectin_like_bacterial, Uncharacteri 9e-14
cd09823378 cd09823, peroxinectin_like, peroxinectin_like anim 8e-10
cd09826440 cd09826, peroxidasin_like, Animal heme peroxidase 7e-08
cd09817550 cd09817, linoleate_diol_synthase_like, Linoleate ( 2e-07
cd09820558 cd09820, dual_peroxidase_like, Dual oxidase and re 2e-06
cd00892237 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and 0.002
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase Back     alignment and domain information 
 Score =  567 bits (1463), Expect = 0.0
 Identities = 225/273 (82%), Positives = 246/273 (90%)

Query: 1   MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
           +KKP NHGVPYSLTEEFTSVYRMH+LLPD L LRDI A PG NKSPP  E++PM  L+G 
Sbjct: 360 LKKPNNHGVPYSLTEEFTSVYRMHSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGL 419

Query: 61  KGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVY 120
           KGEK LS IGFEK +VSMGHQACGALELWNYP W+RDL+PQ+ DG DRPDHVD+AALE+Y
Sbjct: 420 KGEKKLSKIGFEKLMVSMGHQACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIY 479

Query: 121 RDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKK 180
           RDRER  ARYNEFRR LL+IPISKWEDLT+D+EAIEVL EVYGDDVE+LDL VGLMAEKK
Sbjct: 480 RDRERGVARYNEFRRNLLMIPISKWEDLTDDEEAIEVLREVYGDDVEKLDLLVGLMAEKK 539

Query: 181 IKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240
           IKGFAISETAF IFLLMASRRLEADRFFTS+FNE+TYTKKGLEWVNTTESLKDV+ RHYP
Sbjct: 540 IKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYP 599

Query: 241 EITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVP 273
           E+T+KWMNS+SAFSVWDSPPN HN IPLYLR P
Sbjct: 600 EMTDKWMNSSSAFSVWDSPPNPHNWIPLYLRPP 632

Length = 633
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant pathogen-inducible oxygenases Back     alignment and domain information
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase Back     alignment and domain information
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related proteins Back     alignment and domain information
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin endoperoxide synthase and related bacterial proteins Back     alignment and domain information
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of heme peroxidases, mostly bacterial Back     alignment and domain information
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme peroxidases Back     alignment and domain information
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of peroxidasin and related proteins Back     alignment and domain information
>gnl|CDD|188649 cd09817, linoleate_diol_synthase_like, Linoleate (8R)-dioxygenase and related enzymes Back     alignment and domain information
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme peroxidases Back     alignment and domain information
>gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PLN02283633 alpha-dioxygenase 100.0
KOG2408719 consensus Peroxidase/oxygenase [General function p 100.0
PF03098530 An_peroxidase: Animal haem peroxidase; InterPro: I 100.0
>PLN02283 alpha-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-69  Score=539.60  Aligned_cols=273  Identities=82%  Similarity=1.327  Sum_probs=246.6

Q ss_pred             CCCCCCCCCCchhHHHHHHhhhhcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhc
Q 023970            2 KKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQ   81 (274)
Q Consensus         2 ~~~~~~~v~p~Is~EF~aafRfHSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q   81 (274)
                      ++++|++|+++|++||+||||||||||+.+.+.+..+.....+.++..+.+++.++++..+...+.+.|++.+++||+.|
T Consensus       361 ~~~~~~~v~~~is~EF~aaYR~Hslip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~l~~~Gl~~ll~~l~~q  440 (633)
T PLN02283        361 KKPNNHGVPYSLTEEFTSVYRMHSLLPDHLILRDITAAPGENKSPPLIEEIPMPELIGLKGEKKLSKIGFEKLMVSMGHQ  440 (633)
T ss_pred             CccccCCCCcchhHHHHHHHhhhhcCCCceecccccccccccccccccccccHHHHHhhcccccccccCHHHHHHHHhhc
Confidence            45678899999999999999999999999988876553322222234567899999876554555678999999999999


Q ss_pred             hhcccccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCCCCHHHHHHHHHH
Q 023970           82 ACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEV  161 (274)
Q Consensus        82 ~a~~~d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~~~~~~~~~L~~l  161 (274)
                      ++++++.+|++..+++.+.++..|..++.|+||+|+|||||||||||+||+||++|||+++++|+||+++++++++|+++
T Consensus       441 ~aga~~l~n~p~~l~~l~~~~~~g~~~~~g~DLaal~IqRgRDhGlp~YNefR~~~gL~~~~sFedlt~d~e~~~~L~~l  520 (633)
T PLN02283        441 ACGALELWNYPSWMRDLVPQDIDGEDRPDHVDMAALEIYRDRERGVARYNEFRRNLLMIPISKWEDLTDDEEAIEVLREV  520 (633)
T ss_pred             chhccccccCcHHHHhhhhccccCCcccccccHHHHHHHhhhhcCCccHHHHHHHcCCCCCCCHHHcCCCHHHHHHHHHH
Confidence            99999999999999998777666655568999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHhhCCC
Q 023970          162 YGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYPE  241 (274)
Q Consensus       162 Y~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~n~~~  241 (274)
                      |+++|||||||||+++|++++|+.+|||++||++.||+|+++|||||||+++|++||++|++||++++||++|||||.++
T Consensus       521 Y~~~vddVDL~VG~laE~~v~G~~vG~T~~~i~~~~a~r~~~gDRF~~en~np~~fT~~gl~~I~~t~tl~dvl~r~~p~  600 (633)
T PLN02283        521 YGDDVEKLDLLVGLMAEKKIKGFAISETAFFIFLLMASRRLEADRFFTSNFNEKTYTKKGLEWVNTTESLKDVIDRHYPE  600 (633)
T ss_pred             hCCCHHHHHhhhhheecccCCCCCcCHHHHHHHHHHHHHHhcCCCCeEecCCcCcCCHHHHHHHHccCcHHHHHHHhCcc
Confidence            97579999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             CccccccCCCcccccCCCCCCCCCccccccCCC
Q 023970          242 ITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVPQ  274 (274)
Q Consensus       242 ~~~~~~~q~n~F~~~~~~~~~~~~~~~~~~~~~  274 (274)
                      ++..|+...|||++|+..+.++++||||||+|.
T Consensus       601 ~~~~~~~~~~~f~~w~~~~~~~~~~~~~~~~~~  633 (633)
T PLN02283        601 MTDKWMNSSSAFSVWDSPPNPHNWIPLYLRPPP  633 (633)
T ss_pred             hhhhhhhcccCCCcCCCCCCCCCccceeeccCC
Confidence            999999999999999988899999999999984

>KOG2408 consensus Peroxidase/oxygenase [General function prediction only] Back     alignment and domain information
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
4hhr_A652 Crystal Structure Of Fatty Acid Alpha-dioxygenase ( 1e-123
3tzi_A593 X-Ray Crystal Structure Of Arachidonic Acid Bound I 3e-05
3rr3_A560 Structure Of (R)-Flurbiprofen Bound To Mcox-2 Lengt 5e-05
1cvu_A552 Crystal Structure Of Arachidonic Acid Bound To The 5e-05
3pgh_A587 Cyclooxygenase-2 (Prostaglandin Synthase-2) Complex 5e-05
1ddx_A552 Crystal Structure Of A Mixture Of Arachidonic Acid 6e-05
3hs5_A591 X-Ray Crystal Structure Of Arachidonic Acid Bound T 6e-05
3olt_A592 X-Ray Crystal Structure Of Arachidonic Acid Bound T 6e-05
3nt1_A587 High Resolution Structure Of Naproxen:cox-2 Complex 6e-05
3krk_A591 X-Ray Crystal Structure Of Arachidonic Acid Bound I 6e-05
3mdl_A587 X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol 6e-05
1pxx_A604 Crystal Structure Of Diclofenac Bound To The Cycloo 7e-05
3qh0_A610 X-Ray Crystal Structure Of Palmitic Acid Bound To T 7e-05
1u67_A600 Crystal Structure Of Arachidonic Acid Bound To A Mu 4e-04
1cqe_A580 Prostaglandin H2 Synthase-1 Complex With Flurbiprof 7e-04
3n8y_B553 Structure Of Aspirin Acetylated Cyclooxygenase-1 In 7e-04
3n8w_B553 Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1 H 7e-04
1prh_A554 The X-Ray Crystal Structure Of The Membrane Protein 7e-04
1diy_A553 Crystal Structure Of Arachidonic Acid Bound In The 7e-04
1ht5_A551 The 2.75 Angstrom Resolution Model Of Ovine Cox-1 C 7e-04
1ebv_A551 Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid 7e-04
1pge_A576 Prostaglandin H2 Synthase-1 Complexed With P-(2'-Io 8e-04
1pth_A576 The Structural Basis Of Aspirin Activity Inferred F 8e-04
2oye_P600 Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To 8e-04
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase (arabidopsis Thaliana) Length = 652 Back     alignment and structure 
Iteration: 1

 Score =  436 bits (1121), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/273 (74%), Positives = 237/273 (86%)
Query: 1   MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
           MKKP+NHGVPYSLTE+FTSVYRMH+LLPD L++ DID  PG NKS P  +++ M +L+G 
Sbjct: 378 MKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGR 437
Query: 61  KGEKALSAIGFEKRIVSMGHQACGALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVY 120
           KGE+ +S IGF K +VSMGHQA GALEL NYP+WLRD++P + +G  RPDHVDLAALE+Y
Sbjct: 438 KGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIY 497
Query: 121 RDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKK 180
           RDRER   RYNEFRR++ +IPI+KWEDLTED+EAIEVL++VY  DVEELDL VGLMAEKK
Sbjct: 498 RDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKK 557
Query: 181 IKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHRHYP 240
           IKGFAISETAF IFL+MA+RRLEADRFFTS FNE  YTKKGLEWVNTTESLKDV+ RHYP
Sbjct: 558 IKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYP 617
Query: 241 EITEKWMNSTSAFSVWDSPPNSHNPIPLYLRVP 273
           ++T+KWMNS SAFSVWDSPP + NPIPLYLR+P
Sbjct: 618 DMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIP 650
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Channel Of G533v Murine Cox-2 Length = 593 Back     alignment and structure
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2 Length = 560 Back     alignment and structure
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Active Site Of Cox-2 Length = 552 Back     alignment and structure
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With A Non- Selective Inhibitor, Flurbiprofen Length = 587 Back     alignment and structure
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And Prostaglandin Bound To The Cyclooxygenase Active Site Of Cox-2: Prostaglandin Structure Length = 552 Back     alignment and structure
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 591 Back     alignment and structure
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The Cyclooxygenase Channel Of R513h Murine Cox-2 Length = 592 Back     alignment and structure
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex. Length = 587 Back     alignment and structure
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Channel Of L531f Murine Cox-2 Length = 591 Back     alignment and structure
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 587 Back     alignment and structure
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The Cyclooxygenase Active Site Of Cox-2 Length = 604 Back     alignment and structure
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The Cyclooxygenase Channel Of Cyclooxygenase-2 Length = 610 Back     alignment and structure
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of Prostagladin H Synthase-1 That Forms Predominantly 11-hpete Length = 600 Back     alignment and structure
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen Length = 580 Back     alignment and structure
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In Complex With Diclofenac Length = 553 Back     alignment and structure
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1 Heterodimer Mutant In Complex With Flurbiprofen Length = 553 Back     alignment and structure
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein Prostaglandin H2 Synthase-1 Length = 554 Back     alignment and structure
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The Cyclooxygenase Active Site Of Pghs-1 Length = 553 Back     alignment and structure
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1 Complexed With Methyl Ester Flurbiprofen Length = 551 Back     alignment and structure
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid Length = 551 Back     alignment and structure
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen) Length = 576 Back     alignment and structure
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The Crystal Structure Of Inactivated Prostaglandin H2 Synthase Length = 576 Back     alignment and structure
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To Cyclooxygenase-1 Length = 600 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3nt1_A587 Prostaglandin-endoperoxide synthase 2; prostagland 1e-37
1q4g_A553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 3e-34
1d2v_C466 Myeloperoxidase; heme-protein, oxidoreductase, per 3e-28
3q9k_A595 Lactoperoxidase, LPO; bovine lactoperoxidase, oxid 3e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587 Back     alignment and structure
 Score =  139 bits (350), Expect = 1e-37
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 43/270 (15%)

Query: 1   MKKPENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGH 60
           +   +       +  EF ++Y  H LLPDT N+ D +          S            
Sbjct: 334 LLFNQQFQYQNRIASEFNTLYHWHPLLPDTFNIEDQEYSFKQFLYNNSI----------- 382

Query: 61  KGEKALSAIGFEKRIVSMGHQACGAL-ELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEV 119
                L   G  + + S   Q  G +    N P+ ++ +                A   +
Sbjct: 383 -----LLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAV----------------AKASI 421

Query: 120 YRDRERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEK 179
            + RE K    NE+R+   L P + +E+LT +KE    L  +Y  D++ ++L   L+ EK
Sbjct: 422 DQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480

Query: 180 KIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEET--YTKKGLEWVNTTESLKDVLHR 237
                   ET   +    + + L  +   +  + + +    + G + +NT  S++ ++  
Sbjct: 481 PRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTA-SIQSLICN 539

Query: 238 HYPEITEKWMNSTSAFSVWDSPPNSHNPIP 267
           +            ++F+V D  P     I 
Sbjct: 540 NVKGCP------FTSFNVQDPQPTKTATIN 563
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553 Back     alignment and structure
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Length = 466 Back     alignment and structure
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Length = 595 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
1d2v_C466 Myeloperoxidase; heme-protein, oxidoreductase, per 100.0
3q9k_A595 Lactoperoxidase, LPO; bovine lactoperoxidase, oxid 100.0
1q4g_A553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 100.0
3nt1_A587 Prostaglandin-endoperoxide synthase 2; prostagland 100.0
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C* Back     alignment and structure
Probab=100.00  E-value=4.4e-66  Score=500.47  Aligned_cols=245  Identities=18%  Similarity=0.191  Sum_probs=219.7

Q ss_pred             CCCCCCCCchhHHHHHHhhh-hcCCCCcccccccCCCCCCCCCCCCCCCcchhHHhcCccccccccccHHHHHHHHHhch
Q 023970            4 PENHGVPYSLTEEFTSVYRM-HALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEKALSAIGFEKRIVSMGHQA   82 (274)
Q Consensus         4 ~~~~~v~p~Is~EF~aafRf-HSlip~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~gld~il~G~~~q~   82 (274)
                      -|+++|+|+|++||+||||| |||||+.+.+++.++...     .....++|.+.+++|. .++.+.|++.+++||++|+
T Consensus       203 gy~~~v~p~isnEF~aafRfgHsli~~~~~~~~~~~~~~-----~~~~~~~l~~~~f~~~-~~~~~~g~d~~lrgl~~q~  276 (466)
T 1d2v_C          203 SYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPM-----EPNPRVPLSRVFFASW-RVVLEGGIDPILRGLMATP  276 (466)
T ss_dssp             CCCTTSCCSCBHHHHHHGGGGGGGCCSEEECBCTTSSBC-----SSCSEEEGGGTTTCHH-HHHHTTCHHHHHHHHHHSE
T ss_pred             CCCCCCCCchhHHHHHHHhcccccCchhhcccccccccc-----CCCCceeHHHHhcChH-HHhhccCchHHHHHHhhCc
Confidence            48899999999999999998 999999999998876421     1245789999999875 4667789999999999999


Q ss_pred             hc--ccccCCccHHHHhccCCCCCCCCCCCchhHHHHHHHHHhhcCchhHHHHHHHhCCCCCCCccCCC---CCHHHHHH
Q 023970           83 CG--ALELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDRERKAARYNEFRRALLLIPISKWEDLT---EDKEAIEV  157 (274)
Q Consensus        83 a~--~~d~~~~~~~l~~~lf~~~~g~~~~~g~DL~al~IqRgRDhGlp~YN~~R~~cgl~~~~sF~dl~---~~~~~~~~  157 (274)
                      ++  +.|. .+.++|+++||....    ..|+||+|+|||||||||||+||+||++|||+++++|+||+   ++++++++
T Consensus       277 a~~~~~d~-~l~~~l~~~lf~~~~----~~~~DL~alnIqRgRDhGlp~YN~~R~~~gL~~~~tf~dl~~~~~d~~~~~~  351 (466)
T 1d2v_C          277 AKLNRQNQ-IAVDEIRERLFEQVM----RIGLDLPALNMQRSRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARK  351 (466)
T ss_dssp             EECCBTTB-CSCHHHHTCBTGGGS----SSCBCHHHHHHHHHHHTTCCCHHHHHHHTTCCCCCSHHHHHHHHTCHHHHHH
T ss_pred             cccccCch-hhhHHHHHHhhcccC----ccchhHHHHHHHHHHHcCCCCHHHHHHHcCCCCCCCHHHHhhccCCHHHHHH
Confidence            98  4566 789999999997654    37899999999999999999999999999999999999999   58999999


Q ss_pred             HHHHhcCCCCcccccccccccccCCCCCCchHHHHHHHHHHHHhhcCCcccccCCCCCCCCHHHHHHHccCCcHHHHHHh
Q 023970          158 LNEVYGDDVEELDLQVGLMAEKKIKGFAISETAFVIFLLMASRRLEADRFFTSSFNEETYTKKGLEWVNTTESLKDVLHR  237 (274)
Q Consensus       158 L~~lY~~~vddVDL~vG~l~E~~~~G~~~GpT~~cIi~~q~~r~~~gDRf~ye~~~p~~Ft~~ql~eIr~~~tla~iic~  237 (274)
                      |+++|+ +|||||||||+|+|++++|+.+||||+|||++||.|+++||||||||  |+.||++|++|||++ ||++|||+
T Consensus       352 L~~lY~-~~d~vDL~vG~laE~~~~G~~~Gptf~~ii~~qf~rLr~gDRf~yen--~~~ft~~ql~ei~~~-sl~~iic~  427 (466)
T 1d2v_C          352 LMEQYG-TPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWEN--EGVFSMQQRQALAQI-SLPRIICD  427 (466)
T ss_dssp             HHHHHS-SGGGSCHHHHHHHSCCCTTCSSCHHHHHHHHHHHHHHHHTCTTCTTS--TTTSCHHHHHHHTTC-CHHHHHHH
T ss_pred             HHHHhC-CccccceeecccccccCCCCCCCHHHHHHHHHHHHHHHhcCcccccC--CCcccchhhHHHHhC-CHHHHHHh
Confidence            999999 99999999999999999999999999999999999999999999996  899999999999999 99999999


Q ss_pred             hCCCCccccccCCC-cccccC--CCCCCCCCcc
Q 023970          238 HYPEITEKWMNSTS-AFSVWD--SPPNSHNPIP  267 (274)
Q Consensus       238 n~~~~~~~~~~q~n-~F~~~~--~~~~~~~~~~  267 (274)
                      |+ +++.   +|+| ||...+  +...+|+.||
T Consensus       428 n~-~~~~---iq~~~~F~~~~~~n~~~~C~~ip  456 (466)
T 1d2v_C          428 NT-GITT---VSKNNIFMSNSYPRDFVNCSTLP  456 (466)
T ss_dssp             HS-SCCE---EECSCTTTCCSTTTTEEEGGGSC
T ss_pred             cC-CCcc---cCCCccccCCCCCCCCcCcccCC
Confidence            99 5764   8999 998554  2345888887
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ... Back     alignment and structure
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Back     alignment and structure
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1cvua1511 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mou 6e-37
d1q4ga1511 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {She 3e-35
g1cxp.1570 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapi 3e-30
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: Myeloperoxidase-like
domain: Prostaglandin H2 synthase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (339), Expect = 6e-37
 Identities = 47/237 (19%), Positives = 92/237 (38%), Gaps = 37/237 (15%)

Query: 5   ENHGVPYSLTEEFTSVYRMHALLPDTLNLRDIDAQPGPNKSPPSAEKVPMENLVGHKGEK 64
           +       +  EF ++Y  H LLPDT N+ D              ++   +  +      
Sbjct: 297 QQFQYQNRIASEFNTLYHWHPLLPDTFNIED--------------QEYSFKQFL--YNNS 340

Query: 65  ALSAIGFEKRIVSMGHQACGAL-ELWNYPLWLRDLIPQNTDGTDRPDHVDLAALEVYRDR 123
            L   G  + + S   Q  G +    N P+ ++ +                A   + + R
Sbjct: 341 ILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAV----------------AKASIDQSR 384

Query: 124 ERKAARYNEFRRALLLIPISKWEDLTEDKEAIEVLNEVYGDDVEELDLQVGLMAEKKIKG 183
           E K    NE+R+   L P + +E+LT +KE    L  +Y  D++ ++L   L+ EK    
Sbjct: 385 EMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALYS-DIDVMELYPALLVEKPRPD 443

Query: 184 FAISETAFVIFLLMASRRLEADRFFTSSF-NEETYTKK-GLEWVNTTESLKDVLHRH 238
               ET   +    + + L  +   +  +    T+  + G + +NT  S++ ++  +
Sbjct: 444 AIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGGEVGFKIINTA-SIQSLICNN 499
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
g1cxp.1570 Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606 100.0
d1cvua1511 Prostaglandin H2 synthase {Mouse (Mus musculus) [T 100.0
d1q4ga1511 Prostaglandin H2 synthase {Sheep (Ovis aries) [Tax 100.0
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure