Citrus Sinensis ID: 023975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEcccHHHHHHHHHccccccEEEEcccccEEEEcccEEEEEccccccEEEEccccccccEEEEEEEEEEEEccEEEccccEEEEccEEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEcccEEEEcccccccEEEEcccccEEEEcEEEEcccccccHHHHHcccccccccccccEEEccccEEcccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEccHHHHHHHHHcccccEEEEEccccccccccHHHHHHHccccccccccccccccccEEEEEEEEEEccccEEEEEcccEEcccEEEEEEccccccccccEEEEEEEcccccHHHHHHHHHHcccccEEEEEcccccHcccccHHHHHHHHHHHHHcccEEEEccEEEEEEcccccEEEEEccccEEEccEEEEEccccccHHHHHHccccccHccccEEEEcccccccccccEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mesrrqqqsegknkrVVVIGGGVAGSLVAKSLqfsadvtlidpkeyFEITWASLRAMvepsfgkrsvinhtdylvngrivaspainitenevltaEGRRVVYDYLVIAtghkdpvpktrterlnqyqagptgvELAGEiavdfpekkvTLVHKGSRllefigpkagdktrdWLISKKVDvklgervnldsvsegsdtyltstgdtinadchflctgkpvgsdwlkdtilkdsldthgmlmvdenlrvkgqknifaigditdirvsasmifpqvf
Flexible Loop (DISEMBL)
mesrrqqqsegknkrvvvIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAtghkdpvpktrtERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHkgsrllefigpkagdktrdwLISKkvdvklgervnldsvsegsdTYLTSTGDTINADCHFLCTGkpvgsdwlKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Low Complexity Region (SEG)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered region (IsUnstruct)
**************RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD**********NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF****
Disordered Region (DISOPRED)
****************VVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISEMBL)
*************KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Disordered Region (DISPRO)
************NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF***F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q54NS9	408	Apoptosis-inducing factor	no	no	0.901	0.605	0.312	3e-26
Q54NS8	387	Apoptosis-inducing factor	no	no	0.894	0.633	0.298	2e-25
Q6GLW8	374	Apoptosis-inducing factor	N/A	no	0.821	0.601	0.286	8e-20
B4F6I3	374	Apoptosis-inducing factor	yes	no	0.821	0.601	0.290	2e-19
Q9BRQ8	373	Apoptosis-inducing factor	yes	no	0.802	0.589	0.300	6e-19
B5FXE5	373	Apoptosis-inducing factor	yes	no	0.802	0.589	0.273	7e-19
A5PJM4	373	Apoptosis-inducing factor	yes	no	0.813	0.597	0.296	5e-18
Q8BUE4	373	Apoptosis-inducing factor	yes	no	0.802	0.589	0.281	7e-17
P52923	378	Apoptosis-inducing factor	yes	no	0.755	0.547	0.259	2e-07
Q94BV7	582	NAD(P)H dehydrogenase B2,	no	no	0.897	0.422	0.259	3e-05

>sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 143/291 (49%), Gaps = 44/291 (15%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I +   
Sbjct: 28  KRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYDKL 87

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG------HKDPVPK-TRTERLNQY 126
           L NG+ +    I I+   V   +G+ + +DYLVIATG       K P+ K + TE  N Y
Sbjct: 88  LKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFNYY 147

Query: 127 Q----------------AGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEF-IGP 163
           +                 G  G E+ GEI   +P       KK+T+VH G++L+      
Sbjct: 148 KDISEQIKQAKSILIVGGGSVGCEVVGEIINKYPIKNKELAKKITIVHSGNKLVSSKTNN 207

Query: 164 KAGDKTRDWLISKKVDVKLGERVNL-DSVSE------------GSDTYLTSTGDTINADC 210
           K  +   + +  + V V L +R+ + D + +               TY T  G +I +D 
Sbjct: 208 KFNNLINESMKKRNVSVILNDRIEIPDDIKQCFINQTSPNFQVSLKTYKTKNGLSIESDF 267

Query: 211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
                G  + S+  K T   + ++  G + V+++ +V+G  NIFAIGDITD
Sbjct: 268 VIWTIGIKLNSESYK-TNFSNEINEIGQIKVNQSCQVQGYDNIFAIGDITD 317

Putative FAD-dependent oxidoreductase.
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q54NS8|AIFB_DICDI Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 134/295 (45%), Gaps = 50/295 (16%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I +   
Sbjct: 6   KRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYDKL 65

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLNQY 126
           L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN +
Sbjct: 66  LKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILNYF 125

Query: 127 Q----------------AGPTGVELAGEIAVDFP------EKKVTLVHKGSRLLEFIGPK 164
           Q                 G    EL  EI   +P       KK+T+VH GS+L   + PK
Sbjct: 126 QNFSQQIKQAKSILIVGGGAVACELVSEIVEKYPVKDSELVKKITIVHSGSKL---VNPK 182

Query: 165 AGDKTRD----WLISKKVDVKLGERVNL-------------DSVSEGSDTYLTSTGDTIN 207
             DK  +     +  + V+V L +R+ +              ++   S  Y T  G  I 
Sbjct: 183 MNDKFTNVVSKAMKKRNVEVILNDRITMPDEIKANLLNQTSPNIQISSQNYTTEKGVPIQ 242

Query: 208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           AD      G    S+  +     + ++  G L V+ + +V+G  N+FAIGD TD 
Sbjct: 243 ADLIIWTVGIKTNSESYQSH-FSNVINESGQLKVNLSCQVQGYNNVFAIGDCTDF 296

Putative FAD-dependent oxidoreductase.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q6GLW8|AIFM2_XENLA Apoptosis-inducing factor 2 OS=Xenopus laevis GN=aifm2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 124/262 (47%), Gaps = 37/262 (14%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVN----GRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D   +    G++V    IN+  
Sbjct: 32  FGIPFLLVDMKDAFHHNVAALRACVESGFARKTFISYKDSFHDSFKQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
             V+      + + +L+IATG   P P    E +++ QA                     
Sbjct: 89  QLVILESNEELSFSHLIIATGSNGPFPGKFNEVISKDQAIQIYENLVEEIQKAKHVVVVG 148

Query: 129 -GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 186
            G  GVE+A E+  D+PEK+VTL+H    L +  + P      ++ L+ K V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLIHSKIALADVQLQPSVRRTVKEILLRKGVRLILAQKV 208

Query: 187 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
            NLD V+     E  +  L    + +N D    C G  V S   + + L D +   G L+
Sbjct: 209 TNLDQVTPNVAQENMELQLDKDSEVVNCDLVLCCIGLKVSSSSYR-SALGDKMAEDGSLI 267

Query: 241 VDENLRVKGQKNIFAIGDITDI 262
           V++ L+V+G +N++A+GD   I
Sbjct: 268 VNDYLQVQGHENVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B4F6I3|AIFM2_XENTR Apoptosis-inducing factor 2 OS=Xenopus tropicalis GN=aifm2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 37/262 (14%)

Query: 34  FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL----VNGRIVASPAINITE 89
           F     L+D K+ F    A+LRA VE  F +++ I++ D      + G++V    IN+  
Sbjct: 32  FGIPFVLVDLKDAFHHNVAALRASVESGFARKTFISYKDTFQDNFIQGKVVG---INLQT 88

Query: 90  NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--------------------- 128
             V+      + + +L+IATG   P P      +++ QA                     
Sbjct: 89  QRVILESNEELQFSHLIIATGSNGPFPGKINNVISKDQAIQVYEDLVKEIQKAKHVVVVG 148

Query: 129 -GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV 186
            G  GVE+A E+  D+PEK+VTLVH    L +  + PK     ++ L+SK V + L ++V
Sbjct: 149 GGSAGVEMAAEVKTDYPEKEVTLVHSKVALADVQLQPKVRRTVKEILLSKGVRLILAQKV 208

Query: 187 -NLDSVS-----EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
            NLD V+     E +   L    + +  D    CTG  + S         D L   G L+
Sbjct: 209 TNLDQVTSNVAQENTVLQLDKNSEVVTCDLVLCCTGYKISSSSYSSA-FGDKLAEDGALI 267

Query: 241 VDENLRVKGQKNIFAIGDITDI 262
           V++ L+V+G  N++A+GD   I
Sbjct: 268 VNDYLQVQGHANVYAVGDCAYI 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRQ8|AIFM2_HUMAN Apoptosis-inducing factor 2 OS=Homo sapiens GN=AIFM2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 36/256 (14%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G +V    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVETGFAKKTFISYSVTFKDNFRQGLVVG---IDLKNQMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----------------------GPTGV 133
            G  + + +L++ATG   P P    E  +Q  A                      G  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSSQQAAIQAYEDMVRQVQRSRFIVVVGGGSAGV 155

Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 191
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 192 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
                  Y+   T  G  +  +   LCTG  + S   +    +  L + G L V+E+L+V
Sbjct: 216 PLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKA-FESRLASSGALRVNEHLQV 274

Query: 248 KGQKNIFAIGDITDIR 263
           +G  N++AIGD  D+R
Sbjct: 275 EGHSNVYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B5FXE5|AIFM2_TAEGU Apoptosis-inducing factor 2 OS=Taeniopygia guttata GN=AIFM2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 36/256 (14%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D ++ F    A+LRA VE  F K++ I+++    D    G++VA   I+    +V+ +
Sbjct: 38  LVDVRDAFHHNVAALRAAVESGFAKKTFISYSVTFGDSFRQGKVVA---IDPGRQQVVLS 94

Query: 96  EGRRVVYDYLVIATGHKDPVPKT----------------------RTERLNQYQAGPTGV 133
           +G  + Y +L++ATG   P P                        +++R+     G  GV
Sbjct: 95  DGEELHYSHLILATGSDGPFPGKFNQVIDMESAIQTYEDMVKEIEKSQRILVVGGGAAGV 154

Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV----NL 188
           E+A EI  ++P K++ L+H  + L +  + P      ++ L+ K V + L E+V    NL
Sbjct: 155 EMAAEIKTEYPGKEIILIHSKTALADVELLPSVRQVVKEILLRKGVRLLLSEKVSDIENL 214

Query: 189 DSVSEGSDTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
                  D  + T  G  +  D   LCTG  + S         D + + G L V+++L++
Sbjct: 215 RPNQFQKDMVVRTEKGTEVVVDMVVLCTGIKINSSAYA-AAFGDKMASDGALKVNKHLQL 273

Query: 248 KGQKNIFAIGDITDIR 263
           +G +NI+AIGD  D++
Sbjct: 274 EGYENIYAIGDCADLK 289

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Taeniopygia guttata (taxid: 59729)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A5PJM4|AIFM2_BOVIN Apoptosis-inducing factor 2 OS=Bos taurus GN=AIFM2 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 130/253 (51%), Gaps = 30/253 (11%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT-DYLVNGRIVASPAINITENEVLTAEGR 98
           L+D K+ F    A+LRA VE  F K++ I+++  +  N R      I++    VL  +G+
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSVTFKENFRQGLVVEIDLKNQTVLLEDGQ 98

Query: 99  RVVYDYLVIATG---------------------HKDPVPKT-RTERLNQYQAGPTGVELA 136
            + + +L++ATG                     ++D V +  R++ +     G  GVE+A
Sbjct: 99  ALPFSHLILATGSTGLFPGKFNQVSSQQMAIQAYEDMVTQVQRSQSIVVVGGGSAGVEMA 158

Query: 137 GEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDS--VS 192
            EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL++  V+
Sbjct: 159 AEIKTEYPEKEVTLIHSKMALADTELLPCVRQEVKEILLRKGVQLLLSERVSNLEALPVN 218

Query: 193 EGSDTYLTST--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 250
           E  +     T  G  ++A+   +C G  + S   + +   D L ++G L V+E L+V+G 
Sbjct: 219 ERRECIKVQTDKGTEVDANLVIVCNGIKINSAAYR-SAFGDRLASNGALRVNEYLQVEGY 277

Query: 251 KNIFAIGDITDIR 263
            +I+AIGD  D+R
Sbjct: 278 SHIYAIGDCADVR 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death. Binds to DNA in a sequence-independent manner. May contribute to genotoxin-induced growth arrest.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8BUE4|AIFM2_MOUSE Apoptosis-inducing factor 2 OS=Mus musculus GN=Aifm2 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 122/256 (47%), Gaps = 36/256 (14%)

Query: 40  LIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAINITENEVLTA 95
           L+D K+ F    A+LRA VE  F K++ I+++    D    G+++    I++    VL  
Sbjct: 39  LVDMKDSFHHNVAALRASVESGFAKKTFISYSATFKDNFRQGKVIG---IDLKNRMVLLQ 95

Query: 96  EGRRVVYDYLVIATGHKDPVPK----------------------TRTERLNQYQAGPTGV 133
            G  + + +L++ATG   P P                        R++ +     G  GV
Sbjct: 96  GGEALPFSHLILATGSTGPFPGKFNEVSCQQAAIQAYEDMVKQIQRSQFIVVVGGGSAGV 155

Query: 134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV-NLDSV 191
           E+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV NL+ +
Sbjct: 156 EMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVSNLEEL 215

Query: 192 SEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
                  Y+   T  G  +  +   +C G  + S   + +  +  L ++G L V+E L+V
Sbjct: 216 PRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYR-SAFESRLASNGALKVNEFLQV 274

Query: 248 KGQKNIFAIGDITDIR 263
           +G  NI+AIGD  D +
Sbjct: 275 EGYSNIYAIGDCADTK 290

Oxidoreductase, which may play a role in mediating a p53/TP53-dependent apoptosis response. Probable oxidoreductase that acts as a caspase-independent mitochondrial effector of apoptotic cell death (By similarity). May contribute to genotoxin-induced growth arrest.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P52923|AIF1_YEAST Apoptosis-inducing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIF1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 67/274 (24%)

Query: 38  VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINITENEVLTAE 96
           + L+    Y     +++R  V   + K S++   + L +G  ++   A +  + EV+   
Sbjct: 34  IKLVTASNYVYFLPSAVRLTVSKDYTK-SILPLKNVLDSGIEVIKDTAASFDDKEVVLGS 92

Query: 97  GRRVVYDYLVIATGHK--DPVPKTRT--ERLNQY-----------------QAGPTGVEL 135
            R + +D LV+ATG K  DP+  T T  +   +Y                   G    EL
Sbjct: 93  DRAIKFDILVLATGSKWADPIGSTYTFGDNYKEYFEREASRISDADHILFLGGGFVNCEL 152

Query: 136 AGEIAVDFPE------KKVTLVHKGSRLLEFIGPKAG---DKTR----DWLISKKVDVKL 182
           AGE+   + E      K+++++H   +LL    P +G   D  R    D+L    + + L
Sbjct: 153 AGELLFKYLEEIRSGKKRISIIHNSDKLL----PDSGLYNDTLRKNVTDYLSKNGITLYL 208

Query: 183 GE-RVNLDS------VSEGSDTYLTSTGDTINADCHFLCTG----KPVGSDWLKDTILKD 231
                +LD+      + EGS  Y       I+AD  +   G     PV S       + D
Sbjct: 209 NTVGASLDTSPKRIFLGEGSSKY-------IDADLIYRGVGISPNVPVNS-------ISD 254

Query: 232 SLDTHGMLMVDENLRVKGQK--NIFAIGDITDIR 263
             D  G + V++N RVK  +  N+FAIGD+T+ R
Sbjct: 255 LCDKKGFIQVEKNFRVKAVEAGNVFAIGDVTNFR 288

Putative FAD-dependent oxidoreductase involved in the resistance to cercosporin and other singlet oxygen-generating photosensitizers. Translocates from mitochondria to the nucleus under apoptotic conditions, where it degrades DNA and induces apoptosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 127/324 (39%), Gaps = 78/324 (24%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSA-DVTLIDPKEYFEIT---------WASLRAMVEP- 60
           K K+VV++G G AG+   K+L  S  +V +I P+ YF  T             R++VEP 
Sbjct: 57  KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116

Query: 61  -SFGKRSVINHTDYLVNGRIVASPA---INITENEVLTAEGRR---VVYDYLVIATG--- 110
            + G+++V   T YL        PA   +     + L++ G++   V YDYLVIATG   
Sbjct: 117 RNIGRKNV--DTSYLEAECFKIDPASKKVYCRSKQGLSSNGKKEFSVDYDYLVIATGAQS 174

Query: 111 --------------------------------HKDPVP------KTRTERLNQYQAGPTG 132
                                            K  +P      + R         GPTG
Sbjct: 175 NTFNIPGVEENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGPTG 234

Query: 133 VELAGEIAVDF---------PEKK----VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 179
           VE A E+  DF         P  K    +TL+     +L     +  +   +      +D
Sbjct: 235 VEFAAELH-DFVTEDLVSLYPRAKGSVRITLLEAADHILTMFDKRITEFAEEKFSRDGID 293

Query: 180 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGM 238
           VKLG  V    V+E   +  T  G+  +     +     +G+   +KD + +        
Sbjct: 294 VKLGSMVT--KVNEKDISAKTKGGEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRA 351

Query: 239 LMVDENLRVKGQKNIFAIGDITDI 262
           L  DE LRV+G  NI+A+GD   I
Sbjct: 352 LATDEWLRVEGTDNIYALGDCATI 375

Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
224059230	362	predicted protein [Populus trichocarpa]	0.916	0.693	0.702	1e-103
225436124	368	PREDICTED: apoptosis-inducing factor hom	0.916	0.682	0.726	1e-101
359487025	365	PREDICTED: apoptosis-inducing factor hom	0.901	0.676	0.683	1e-101
147860316	365	hypothetical protein VITISV_040675 [Viti	0.901	0.676	0.683	1e-100
15229901	367	FAD/NAD(P)-binding oxidoreductase family	0.941	0.702	0.649	1e-100
297818884	367	pyridine nucleotide-disulfide oxidoreduc	0.941	0.702	0.649	1e-100
356539209	359	PREDICTED: apoptosis-inducing factor hom	0.923	0.704	0.657	2e-99
356542786	361	PREDICTED: apoptosis-inducing factor hom	0.905	0.686	0.674	4e-99
255565779	363	apoptosis-inducing factor, putative [Ric	0.905	0.683	0.674	5e-99
297812335	365	pyridine nucleotide-disulfide oxidoreduc	0.916	0.687	0.655	1e-96

>gi|224059230|ref|XP_002299779.1| predicted protein [Populus trichocarpa] gi|222847037|gb|EEE84584.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/269 (70%), Positives = 214/269 (79%), Gaps = 18/269 (6%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + +R+VVIGGG+AGSL+AKSLQF ADVT IDPKEYFEITWA+LR MVEPSFG+RSVINH 
Sbjct: 7   EKRRLVVIGGGIAGSLLAKSLQFHADVTFIDPKEYFEITWANLRTMVEPSFGERSVINHR 66

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--- 128
           DY  NGRIV S AI ITE EVLTA+   + YDYLVIATGH+DPVPKTR ERL +YQA   
Sbjct: 67  DYYTNGRIVTSTAIGITETEVLTADDFSIPYDYLVIATGHRDPVPKTRMERLKEYQAENE 126

Query: 129 -------------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 175
                        GPTGVELAGEI+VDFPEK VTLVH GSRLLEFIGPKA DKT  WL S
Sbjct: 127 KIKSAQSVLIVGGGPTGVELAGEISVDFPEKHVTLVHSGSRLLEFIGPKASDKTLQWLTS 186

Query: 176 KKVDVKLGERVNLDSV--SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 233
           K+VDVKL +RV+L+SV  S GS  Y T+ G++I ADCHFLCTGKP+GS WL+ TIL  +L
Sbjct: 187 KRVDVKLEQRVDLNSVTDSNGSKIYHTTAGESIRADCHFLCTGKPLGSGWLEGTILNSNL 246

Query: 234 DTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           D+ G LMVDE LRVKG+KNIFAIGDITD+
Sbjct: 247 DSRGRLMVDEYLRVKGRKNIFAIGDITDV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436124|ref|XP_002278901.1| PREDICTED: apoptosis-inducing factor homolog A [Vitis vinifera] gi|296084033|emb|CBI24421.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/267 (72%), Positives = 218/267 (81%), Gaps = 16/267 (5%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           KN+RVVVIGGGVAGSL+AKSLQF ADVTL+DPKEYFEI WASLRAMVEPSF +RSVINH 
Sbjct: 9   KNRRVVVIGGGVAGSLLAKSLQFHADVTLLDPKEYFEIPWASLRAMVEPSFAERSVINHR 68

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ---- 127
           DYL NGRI+ S AIN+T+ EVLTAEGR +VYDYLVIATGH   VP+TRTERL+QY+    
Sbjct: 69  DYLTNGRIITSRAINVTDKEVLTAEGRALVYDYLVIATGHLYSVPRTRTERLSQYETENE 128

Query: 128 ------------AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 175
                        GPTGVEL GEIAVDFPEK+VTLVH GSRL++FIGPKA +KT DWL S
Sbjct: 129 KIRSAGSILIIGGGPTGVELTGEIAVDFPEKEVTLVHNGSRLMQFIGPKASNKTLDWLRS 188

Query: 176 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 235
           K+V+VKL + VNL+SVS+GS TY TS G+TI ADCHFLCTG P+GS WLK+T LKD LD 
Sbjct: 189 KRVEVKLEQSVNLNSVSDGSRTYQTSAGETIEADCHFLCTGSPLGSAWLKETFLKDKLDI 248

Query: 236 HGMLMVDENLRVKGQKNIFAIGDITDI 262
           HG LMVD+NLRVK   NIFAIGDITDI
Sbjct: 249 HGRLMVDKNLRVKDHSNIFAIGDITDI 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487025|ref|XP_002266714.2| PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera] gi|296084446|emb|CBI25005.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 214/265 (80%), Gaps = 18/265 (6%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
           L NG++V S A+NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQA     
Sbjct: 74  LTNGKLVVSTAVNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLEQYQAESEKI 133

Query: 129 -----------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177
                      GPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 237
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIRADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 238 MLMVDENLRVKGQKNIFAIGDITDI 262
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860316|emb|CAN79702.1| hypothetical protein VITISV_040675 [Vitis vinifera]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 213/265 (80%), Gaps = 18/265 (6%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           KRVV++GGG+AGSL+AKSLQF AD+ L+DPKEYFEI WASLRAMVEPSF +R+VINH+DY
Sbjct: 14  KRVVILGGGIAGSLLAKSLQFRADIFLVDPKEYFEIPWASLRAMVEPSFAERTVINHSDY 73

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
           L NG++V S A NI +NEVLT+ G+ + YDYLVIATGH D VPKTRTERL QYQA     
Sbjct: 74  LTNGQLVVSTAXNIRDNEVLTSSGQWIAYDYLVIATGHLDHVPKTRTERLKQYQAESEKI 133

Query: 129 -----------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177
                      GPTGVELAGEI VDFP+KKVTLVH+GSRLLEFIG KA  K  DWL SKK
Sbjct: 134 KSANSILIVGGGPTGVELAGEIVVDFPDKKVTLVHRGSRLLEFIGAKASKKALDWLTSKK 193

Query: 178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 237
           V+V L + V++++ S+G  TY TS G+TI ADCHF+CTGKP+GS WLKDTILKD+LD HG
Sbjct: 194 VEVLLNQSVDINTASDG--TYQTSGGETIXADCHFVCTGKPIGSSWLKDTILKDNLDGHG 251

Query: 238 MLMVDENLRVKGQKNIFAIGDITDI 262
            L+VD+NLRV+G KN+FAIGDIT I
Sbjct: 252 KLVVDDNLRVRGLKNVFAIGDITAI 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229901|ref|NP_190005.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis thaliana] gi|21536882|gb|AAM61214.1| unknown [Arabidopsis thaliana] gi|25083044|gb|AAN72037.1| putative protein [Arabidopsis thaliana] gi|30725576|gb|AAP37810.1| At3g44190 [Arabidopsis thaliana] gi|332644353|gb|AEE77874.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/274 (64%), Positives = 214/274 (78%), Gaps = 16/274 (5%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct: 3   KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQ----------------AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 168
           QYQ                 GP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 169 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
             DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 229 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818884|ref|XP_002877325.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323163|gb|EFH53584.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/274 (64%), Positives = 215/274 (78%), Gaps = 16/274 (5%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
           + +   GK +RVVVIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEPSF +
Sbjct: 3   KTESKSGKGRRVVVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPSFAE 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
           RSVINH  YL NGR+V SPA+NIT+ +V+TA+G    YDYLVIATGH D +PKTR E+L+
Sbjct: 63  RSVINHKKYLQNGRVVTSPAVNITDTDVVTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query: 125 QYQA----------------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 168
           QYQA                GP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct: 123 QYQAEYEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query: 169 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
             DW+ SK+V+V L +RV+L S S+G+ TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct: 183 AFDWMKSKRVEVILNQRVDLSSASDGNKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query: 229 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct: 243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539209|ref|XP_003538092.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/269 (65%), Positives = 211/269 (78%), Gaps = 16/269 (5%)

Query: 10  EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
           E   KRVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR MVEPSF +RS+IN
Sbjct: 2   EKDGKRVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRCMVEPSFAERSLIN 61

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ-- 127
           H DYL NG I+ S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++  
Sbjct: 62  HRDYLTNGDIITSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKED 121

Query: 128 --------------AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 173
                          GPTGVELAGEIAVDFP+KK+TLVHKG+RLLEF+G KAGDKT +WL
Sbjct: 122 NREIKSAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFVGAKAGDKTLNWL 181

Query: 174 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL 233
            SK V VKL + V++++ ++G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ L
Sbjct: 182 KSKNVVVKLEQSVDMNAFTDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDL 241

Query: 234 DTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           D  G + VDE LRVKG+ NIFAIGDITDI
Sbjct: 242 DGQGRIKVDERLRVKGRNNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542786|ref|XP_003539846.1| PREDICTED: apoptosis-inducing factor homolog A-like [Glycine max]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/264 (67%), Positives = 208/264 (78%), Gaps = 16/264 (6%)

Query: 15  RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL 74
           RVV++GGGVAGS+VAKSLQF A VTL+DPKEYFEITWASLR+MVEPSF +RSVINH DY 
Sbjct: 7   RVVILGGGVAGSVVAKSLQFHAHVTLVDPKEYFEITWASLRSMVEPSFAERSVINHRDYF 66

Query: 75  VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ------- 127
            NG IV S A+N+TE EVLTA+G R+ YDYLVIATGH DP+PK+R ERLNQ++       
Sbjct: 67  TNGDIVTSNAVNVTETEVLTADGHRIGYDYLVIATGHADPLPKSRRERLNQFKEDNQKIK 126

Query: 128 ---------AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 178
                     GPTGVELAGEIAVDFP+KK+TLVHKG+RLLEFIG KAGDKT +WL SK V
Sbjct: 127 SAQSILIIGGGPTGVELAGEIAVDFPDKKLTLVHKGARLLEFIGAKAGDKTLNWLKSKNV 186

Query: 179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 238
            VKL + V+L++  +G   Y TS G+TI ADCHFLC GKP+ S WLK+T+LK+ LD  G 
Sbjct: 187 VVKLEQSVDLNAFKDGQKIYQTSNGETIEADCHFLCIGKPLASAWLKETVLKNDLDGQGR 246

Query: 239 LMVDENLRVKGQKNIFAIGDITDI 262
           + VDE LRVKG+ NIFAIGDITDI
Sbjct: 247 IKVDEKLRVKGKDNIFAIGDITDI 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565779|ref|XP_002523879.1| apoptosis-inducing factor, putative [Ricinus communis] gi|223536967|gb|EEF38605.1| apoptosis-inducing factor, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 182/270 (67%), Positives = 217/270 (80%), Gaps = 22/270 (8%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
           +RVVVIGGG+AGSL+AK+LQF A +TL+DPKEYFEITWA+LRA+VEPSF +RSVINH DY
Sbjct: 11  RRVVVIGGGIAGSLIAKNLQFDAHLTLVDPKEYFEITWANLRALVEPSFAERSVINHRDY 70

Query: 74  LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----- 128
             NGRI+AS A+++T+ +VLTA+G+ + YDYLVIATGH D VPKTRTERL +YQA     
Sbjct: 71  FTNGRIIASSAVDVTDADVLTADGQVIPYDYLVIATGHADSVPKTRTERLTEYQAGNEKI 130

Query: 129 -----------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177
                      GPTGVELAGEIA DFPEKKVTLVH GSRL+EFIGPKA +KT  WL SK 
Sbjct: 131 KSAHSILIVGGGPTGVELAGEIAADFPEKKVTLVHDGSRLMEFIGPKAANKTLKWLRSKN 190

Query: 178 VDVKLGERVNLDSVSEGSD-----TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS 232
           V+VKL +RV+L+S++ GSD     TY TS G+TI ADCHFLCTG P+GS WLKDT+LK++
Sbjct: 191 VEVKLEQRVDLNSIT-GSDGNCTKTYHTSAGETIKADCHFLCTGIPLGSAWLKDTVLKNN 249

Query: 233 LDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           LD +G L VDE LRV+G KNIFAIGDIT+I
Sbjct: 250 LDANGRLEVDEYLRVRGWKNIFAIGDITNI 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812335|ref|XP_002874051.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319888|gb|EFH50310.1| pyridine nucleotide-disulfide oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/267 (65%), Positives = 206/267 (77%), Gaps = 16/267 (5%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
           + KRVVVIGGG+AGSL AK LQF ADVTLIDPKEYFEITWASLR+MVEP F +R+VI+H 
Sbjct: 10  QGKRVVVIGGGIAGSLAAKLLQFDADVTLIDPKEYFEITWASLRSMVEPKFAERTVIDHK 69

Query: 72  DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--- 128
            YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR E+L+ YQA   
Sbjct: 70  SYLKQGRVVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQEKLSHYQAEYE 129

Query: 129 -------------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS 175
                        GP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G KA DK  DWL S
Sbjct: 130 KIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQKAADKASDWLES 189

Query: 176 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT 235
           KKV+V L + V+L S S+G+ TY TS G+TI+ADCHFLC GKP+ S WL  T+LKDSLD 
Sbjct: 190 KKVEVILNQSVDLSSASDGNKTYRTSGGETIHADCHFLCVGKPLSSQWLNGTVLKDSLDG 249

Query: 236 HGMLMVDENLRVKGQKNIFAIGDITDI 262
            G +MVDE LR++G+ N+FAIGDIT+I
Sbjct: 250 KGRVMVDEYLRIRGRSNLFAIGDITNI 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2081373	367	AT3G44190 [Arabidopsis thalian	0.941	0.702	0.649	1e-91
TAIR|locus:504956456	365	AT5G22140 "AT5G22140" [Arabido	0.948	0.712	0.625	2e-86
UNIPROTKB|Q9BRQ8	373	AIFM2 "Apoptosis-inducing fact	0.489	0.359	0.340	2.3e-24
DICTYBASE|DDB_G0285003	408	aifC "putative apoptosis induc	0.540	0.362	0.328	4.8e-23
RGD|1304964	373	Aifm2 "apoptosis-inducing fact	0.489	0.359	0.333	2.1e-22
MGI|MGI:1918611	373	Aifm2 "apoptosis-inducing fact	0.489	0.359	0.326	1.1e-21
DICTYBASE|DDB_G0285005	387	aifB "putative apoptosis induc	0.474	0.335	0.335	4.1e-21
UNIPROTKB|F1SUD4	373	AIFM2 "Uncharacterized protein	0.554	0.407	0.312	4.8e-21
UNIPROTKB|E2RQW8	373	AIFM2 "Uncharacterized protein	0.554	0.407	0.306	6.2e-21
DICTYBASE|DDB_G0286241	397	aifD "putative apoptosis induc	0.846	0.584	0.298	3.8e-18

TAIR|locus:2081373 AT3G44190 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 178/274 (64%), Positives = 214/274 (78%)

Query:     5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGK 64
             + +   GK KRV+VIGGG+AGSL +K LQF +D+TLIDPKEYFEI WASLR+MVEP+F +
Sbjct:     3 KTESVSGKGKRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAE 62

Query:    65 RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLN 124
             RSVINH  YL NGR+V SPA+NIT+ +VLTA+G    YDYLVIATGH D +PKTR E+L+
Sbjct:    63 RSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDYLVIATGHNDVLPKTRQEKLS 122

Query:   125 QYQA----------------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 168
             QYQ                 GP+GVELA EIAVDFPEKKVT+VH G RLLEF+G KA DK
Sbjct:   123 QYQTEHEKIKSSESILIVGGGPSGVELAAEIAVDFPEKKVTIVHNGPRLLEFVGQKAADK 182

Query:   169 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
               DW+ SK+V+V L +RV+L S S+GS TY TS G+TI+ADCHFLCTGKP+ S+WLK T+
Sbjct:   183 ALDWMKSKRVEVILNQRVDLSSASDGSKTYRTSGGETIHADCHFLCTGKPLSSEWLKGTV 242

Query:   229 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
             LKD+LD  G LMVDE LRVKG+KN+FAIGDITD+
Sbjct:   243 LKDNLDGKGRLMVDEYLRVKGRKNVFAIGDITDV 276

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:504956456 AT5G22140 "AT5G22140" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 174/278 (62%), Positives = 207/278 (74%)

Query:     1 MESRRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEP 60
             ME       +GK  RVVVIGGG+AGSL AK LQF A+VTLIDPKEYFEITWASLR+MVEP
Sbjct:     1 MEGIESGSKQGK--RVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEP 58

Query:    61 SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT 120
              F +R+VINH  YL  GR+V SPAINITE++V+T +G  + YDYLVIATGH D  PKTR 
Sbjct:    59 KFAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPKTRQ 118

Query:   121 ERLNQYQA----------------GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK 164
             E+L+ YQ+                GP+GVELA EIAVDFPEKKVTLVHKG RLLEF+G K
Sbjct:   119 EKLSHYQSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKKVTLVHKGPRLLEFVGQK 178

Query:   165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL 224
             A DK  DWL SKKV+V L + V+L S S+G+  Y TS G+TI+AD HFLC GKP+ S WL
Sbjct:   179 AADKASDWLESKKVEVILNQSVDLSSASDGNKIYRTSGGETIHADIHFLCVGKPLSSQWL 238

Query:   225 KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
               T+LKDSLD  G +MVDE LR++G+ N+FA+GDIT+I
Sbjct:   239 NGTVLKDSLDGKGRVMVDEYLRIRGRSNVFAVGDITNI 276

GO:0009055 "electron carrier activity" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q9BRQ8 AIFM2 "Apoptosis-inducing factor 2" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
 Identities = 48/141 (34%), Positives = 76/141 (53%)

Query:   129 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV- 186
             G  GVE+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV 
Sbjct:   151 GSAGVEMAAEIKTEYPEKEVTLIHSQVALADKELLPSVRQEVKEILLRKGVQLLLSERVS 210

Query:   187 NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD 242
             NL+ +       Y+   T  G  +  +   LCTG  + S   +    +  L + G L V+
Sbjct:   211 NLEELPLNEYREYIKVQTDKGTEVATNLVILCTGIKINSSAYRKAF-ESRLASSGALRVN 269

Query:   243 ENLRVKGQKNIFAIGDITDIR 263
             E+L+V+G  N++AIGD  D+R
Sbjct:   270 EHLQVEGHSNVYAIGDCADVR 290

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008637 "apoptotic mitochondrial changes" evidence=NAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA;IMP

GO:0030261 "chromosome condensation" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

DICTYBASE|DDB_G0285003 aifC "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 193 (73.0 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
 Identities = 50/152 (32%), Positives = 82/152 (53%)

Query:    12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
             + KRV++IG G  GS VAK L  + +VT+++ K+ F  + AS+RA+VEP   K+  I + 
Sbjct:    26 EKKRVLIIGCGFGGSQVAKLLDSNFEVTVVERKQTFFNSIASIRAIVEPELAKKIYIPYD 85

Query:    72 DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRTERLNQYQAGP 130
               L NG+ +    I I+   V   +G+ + +DYLVIATG     P K   E+++  +   
Sbjct:    86 KLLKNGKFIYGTVIEISPTLVKLEDGKELTFDYLVIATGSNSLAPFKAPLEKISGTEIFN 145

Query:   131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG 162
                +++ +I      K + +V  GS   E +G
Sbjct:   146 YYKDISEQIK---QAKSILIVGGGSVGCEVVG 174

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1304964 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 47/141 (33%), Positives = 75/141 (53%)

Query:   129 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV- 186
             G  GVE+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV 
Sbjct:   151 GSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVS 210

Query:   187 NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD 242
             NL+ +       Y+   T  G  +  +   +C G  + S   +    +  L ++G L V+
Sbjct:   211 NLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSAF-ESRLASNGALKVN 269

Query:   243 ENLRVKGQKNIFAIGDITDIR 263
             E L+V+G  NI+AIGD  DI+
Sbjct:   270 EFLQVEGYSNIYAIGDCADIK 290

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA;ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0030261 "chromosome condensation" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

MGI|MGI:1918611 Aifm2 "apoptosis-inducing factor, mitochondrion-associated 2" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 46/141 (32%), Positives = 74/141 (52%)

Query:   129 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERV- 186
             G  GVE+A EI  ++PEK+VTL+H    L +  + P    + ++ L+ K V + L ERV 
Sbjct:   151 GSAGVEMAAEIKTEYPEKEVTLIHSRVPLADKELLPCVRQEVKEILLRKGVQLLLSERVS 210

Query:   187 NLDSVSEGS-DTYL---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD 242
             NL+ +       Y+   T  G  +  +   +C G  + S   +    +  L ++G L V+
Sbjct:   211 NLEELPRNEYREYIKVETDKGTEVATNMVIVCNGIKINSSAYRSAF-ESRLASNGALKVN 269

Query:   243 ENLRVKGQKNIFAIGDITDIR 263
             E L+V+G  NI+AIGD  D +
Sbjct:   270 EFLQVEGYSNIYAIGDCADTK 290

GO:0003677 "DNA binding" evidence=ISO

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0005811 "lipid particle" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

DICTYBASE|DDB_G0285005 aifB "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 183 (69.5 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 46/137 (33%), Positives = 72/137 (52%)

Query:    12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT 71
             + KRV++IGGG  G  VAK L    +VT+++ K+ F  +  S+RA+VEP   K+  I + 
Sbjct:     4 EKKRVLIIGGGYGGCEVAKQLDSKFNVTVVERKQTFFHSVGSVRAVVEPELVKKIYIPYD 63

Query:    72 DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-------KTRTERLN 124
               L NG+ +    I I+       +G+ + +DYLVIATG     P       K+ +E LN
Sbjct:    64 KLLKNGKFIFGTVIEISPTLAKLEDGQELTFDYLVIATGSNSLAPFKAPLEKKSSSEILN 123

Query:   125 QYQAGPTGVELAGEIAV 141
              +Q     ++ A  I +
Sbjct:   124 YFQNFSQQIKQAKSILI 140

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SUD4 AIFM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 173 (66.0 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
 Identities = 50/160 (31%), Positives = 86/160 (53%)

Query:   111 HKDPVPKT-RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 168
             ++D V +  R++ +     G  GVE+A EI  ++PEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVTQVQRSQAIVVVGGGSAGVEMAAEIKTEYPEKEVTLIHSQMALADTELLPCVRQE 191

Query:   169 TRDWLISKKVDVKLGERV-NLDSV--SEGSDTYLTST--GDTINADCHFLCTGKPVGSDW 223
              ++ L+ K V + L ERV NL+ +  +E  +     T  G  + A+   +C G  + +  
Sbjct:   192 VKEILLRKGVQLLLSERVSNLEGLPLNEYQECIKVQTDKGTEVAANLVIVCNGIRINTLA 251

Query:   224 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
              +   L D L   G L V+E+L+V+G  +I+AIGD  ++R
Sbjct:   252 YRSA-LGDRLAGSGALRVNEHLQVEGCSHIYAIGDCANVR 290

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RQW8 AIFM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
 Identities = 49/160 (30%), Positives = 84/160 (52%)

Query:   111 HKDPVPKT-RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDK 168
             ++D V +  R++ +     G  GVE+A E+  +FPEK+VTL+H    L +  + P    +
Sbjct:   132 YEDMVKQVQRSQSVVVVGGGSAGVEMAAEVKTEFPEKEVTLIHSQVALADKELLPCVRQE 191

Query:   169 TRDWLISKKVDVKLGERV-NLDSV--SEGSDTYLTST--GDTINADCHFLCTGKPVGSDW 223
              ++ L+ K V + L ERV NL+ +  +E  +     T  G  +  +   +C G  V S  
Sbjct:   192 AKEILLQKGVQLLLSERVSNLEDLPLNEYRERIQVHTDKGTEVATNLVIVCNGIKVNSS- 250

Query:   224 LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
                +     L ++G L V+E L+V+G  +I+AIGD  D++
Sbjct:   251 AYHSAFDGHLASNGALRVNEYLQVEGYSHIYAIGDCADVK 290

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004174 "electron-transferring-flavoprotein dehydrogenase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE|DDB_G0286241 aifD "putative apoptosis inducing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 224 (83.9 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 76/255 (29%), Positives = 128/255 (50%)

Query:    14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY 73
             K+VV++GGG +GS+VA+ L+    VTLID K++FE T + LR +VEP   K+  I H+ Y
Sbjct:    52 KKVVIVGGGFSGSIVAQKLENDYQVTLIDTKDFFEFTPSILRTIVEPQHVKKIQILHSHY 111

Query:    74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG--HKDP------VPKTR--TERL 123
             L +  ++    + +   EV+  + R V +DYLVI +G  +  P      V   R  T R 
Sbjct:   112 LKHTNVIQKEVLGVQSREVIL-DDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRE 170

Query:   124 NQYQAGPTGVEL---AGEIAVDFPEKKVTLVH-KGSRL-LEFIGPKAGDKTRDWLI--SK 176
             N Y        L    G + V+   + V   H KG  + +     K  ++     I  ++
Sbjct:   171 NYYHIRKLKRILIIGGGIVGVELAAEIVD--HFKGKEVTIVHSQSKLMNRFPKKTIRYTE 228

Query:   177 KVDVKLGERV--NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLD 234
             +   K G ++  N   V+    T++T  G  I A+  FLCTG    S+++K++   D++ 
Sbjct:   229 EFLQKRGVKLIYNERVVAHRGQTFITDQGSEIIAEQAFLCTGIAPNSNFIKNSY-PDAIS 287

Query:   235 THGMLMVDENLRVKG 249
              +G +  ++ L++ G
Sbjct:   288 ENGYIKANDQLQMAG 302

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I001564 hypothetical protein (362 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	1e-36
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	8e-19
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	7e-16
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	7e-14
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-11
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	3e-09
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	2e-08
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	9e-07
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-05
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	8e-05
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-04
pfam13241	104	pfam13241, NAD_binding_7, Putative NAD(P)-binding	2e-04
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	3e-04
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	4e-04
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	5e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	0.001
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	0.001
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	0.002
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.004
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	0.004
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	0.004

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score =  133 bits (338), Expect = 1e-36
 Identities = 83/313 (26%), Positives = 118/313 (37%), Gaps = 77/313 (24%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYF-EITW--------ASLRAMVEPS 61
           KR+V++GGG  G   AK L       ++TL+D ++Y               S   +  P 
Sbjct: 4   KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP- 62

Query: 62  FGKRSVINHTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
              R+++  +     V G +     I+    +V  A+   + YDYLV+A G +       
Sbjct: 63  --LRALLRKSGNVQFVQGEVTD---IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIP 117

Query: 119 ------------------RTERLNQYQ------------------AGPTGVELAGEIA-- 140
                             R   L  ++                   GPTGVELAGE+A  
Sbjct: 118 GAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAER 177

Query: 141 ---------VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 191
                    VD  E +V LV  G R+L    PK        L    V+V LG  V    V
Sbjct: 178 LHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVT--EV 235

Query: 192 SEGSDTYLTSTGD-TINADCHFLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKG 249
           +    T     G+  I AD      G  V  S  LKD    ++ D  G L+V+  L+V G
Sbjct: 236 TPDGVT--LKDGEEEIPADTVVWAAG--VRASPLLKDLSGLET-DRRGRLVVNPTLQVPG 290

Query: 250 QKNIFAIGDITDI 262
             +IFA GD   +
Sbjct: 291 HPDIFAAGDCAAV 303

Length = 405

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 83.6 bits (207), Expect = 8e-19
 Identities = 68/292 (23%), Positives = 107/292 (36%), Gaps = 53/292 (18%)

Query: 15  RVVVIGGGVAGSLVAKSL-QFSADVTLID------------PKEYFEITWASLRAMVEPS 61
            VV+IGGG AG   A  L +    V LI+            PK    +  A    +    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPK-KLLLEVAEGLELAIGL 59

Query: 62  FGKRSVINH--TDYLVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATG---HKD 113
                V      + L+   +V    I+  E  V+  +   GR + YD L+IATG      
Sbjct: 60  ALPEEVYKEFGVEVLLGTEVVD---IDRGEKTVVLKDVETGREITYDKLIIATGARPRIP 116

Query: 114 PVPKTRTERLNQYQ-------------------AGPTGVELAGEIAVDFPEKKVTLVHKG 154
            +P      L                        G  G+ELA  +A     K+VT+V + 
Sbjct: 117 GIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALA-KL-GKEVTVVERR 174

Query: 155 SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHF 212
            RLL     +      + L    + V +   V +              GD   ++AD   
Sbjct: 175 DRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVL 234

Query: 213 LCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
           +  G +P  ++ L+   ++  LD  G ++VDE LR      I+A GD+ + +
Sbjct: 235 VAIGRRPN-TELLEQAGVE--LDERGYIVVDEYLRTS-VPGIYAAGDVAEGK 282

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 76.5 bits (188), Expect = 7e-16
 Identities = 70/297 (23%), Positives = 114/297 (38%), Gaps = 54/297 (18%)

Query: 16  VVVIGGGVAGSLVAKSL---QFSADVTLI--DPKEYF---------EITWASL-RAMVEP 60
           +V++GGG AG   A +L     +A++TLI  +PK  +             ASL      P
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60

Query: 61  SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---------- 110
            F + + I   D      + +   I+     VL  +G  + YDYLV+ATG          
Sbjct: 61  RFNRATGI---DVRTGTEVTS---IDPENKVVLLDDGE-IEYDYLVLATGARPRPPPISD 113

Query: 111 -HKDPVPKTR--TERLNQYQ----------AGPTGVELAGEIAVDFPEKKVTLVHKGSRL 157
                  + R   E L              AGP G+E A   A     KKVTL+    RL
Sbjct: 114 WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRL 171

Query: 158 LE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCH---FL 213
               + P+  ++  + L    V++ LG +V    V    +T +      I+ +      +
Sbjct: 172 GGQLLDPEVAEELAELLEKYGVELLLGTKVV--GVEGKGNTLVVERVVGIDGEEIKADLV 229

Query: 214 CTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI 269
             G     +  L +  L       G ++VDE        +++A GD+ +I  + +  
Sbjct: 230 IIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGK 286

Length = 415

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 69/305 (22%), Positives = 103/305 (33%), Gaps = 85/305 (27%)

Query: 15  RVVVIGGGVAGSLVAKSLQF----SADVTLIDPKEYFEITWAS----------------- 53
            +V+IGGG   +LV +           VTLI+P      T  S                 
Sbjct: 1   HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIAGHYSLDEIR 57

Query: 54  --LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             LR +   +  +          V         I+    +VL A    + YD L +  G 
Sbjct: 58  IDLRRLARQAGAR---------FVIAEATG---IDPDRRKVLLANRPPLSYDVLSLDVGS 105

Query: 112 KDPVP-------------------------------KTRTERLNQYQAGPTGVELAGEIA 140
             P+                                   T+RL     G  GVE+A  + 
Sbjct: 106 TTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALR 165

Query: 141 VDFPEK----KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS-VSEGS 195
              P++    +VTL+   S L  F       K R  +   ++  + G  V+  + V+ G 
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGF-----PAKVRRLV--LRLLARRGIEVHEGAPVTRGP 218

Query: 196 DTYLT-STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIF 254
           D  L  + G T+ AD     TG      WL ++ L   LD  G L VD  L+     ++F
Sbjct: 219 DGALILADGRTLPADAILWATGA-RAPPWLAESGL--PLDEDGFLRVDPTLQSLSHPHVF 275

Query: 255 AIGDI 259
           A GD 
Sbjct: 276 AAGDC 280

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 64/315 (20%), Positives = 105/315 (33%), Gaps = 71/315 (22%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEIT------------WASLRAMV 58
           K   VVVIG G AG + A    Q    V L++  E    T              +   + 
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62

Query: 59  E-----PSFGKRSVINHTDY-------------LVNGR----------IVASPAINITEN 90
           E       +G  + +   D+             L  G           ++   A  +  +
Sbjct: 63  EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122

Query: 91  --EVLTAEGRRVVYDYLVIATGHKDPVPK-----------TRTERLNQYQ--------AG 129
             EV   +   +  D ++IATG +  +P            +                  G
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGG 182

Query: 130 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 189
             G+E A  +       KVT+V +G R+L    P+   +    L    V + L  +V   
Sbjct: 183 YIGLEFAS-VFAAL-GSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240

Query: 190 SVSEGSDTYLTSTGD--TINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 245
              +         G+  TI AD   +  G KP      L++  ++  LD  G + VD+ +
Sbjct: 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE--LDDRGFIKVDDQM 298

Query: 246 RVKGQKNIFAIGDIT 260
                  I+AIGD+ 
Sbjct: 299 TTN-VPGIYAIGDVI 312

Length = 454

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 75/334 (22%), Positives = 113/334 (33%), Gaps = 89/334 (26%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEIT---------WAS 53
            R + +  K   VVV+G G AG+   ++L     ++T+I P+ +   T            
Sbjct: 1   MRSRTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLE 60

Query: 54  LRAMVEPSFGKRSVINHTDY-LVNGRIVASPAINITENEVLTAEGRR----------VVY 102
            R++ EP    R  +       +   +     ++  E  V      +          V Y
Sbjct: 61  FRSICEPV---RPALAKLPNRYLRAVVYD---VDFEEKRVKCGVVSKSNNANVNTFSVPY 114

Query: 103 DYLVIATGHKD-----------------------------------PVPKTRTE---RLN 124
           D LV+A G +                                     +P T  E   RL 
Sbjct: 115 DKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLL 174

Query: 125 QY---QAGPTGVELAGEIAVDF-------------PEKKVTLVHKGSRLLEFIGPKAGDK 168
            +     GPTGVE A E+A DF              E KVT++  GS +L          
Sbjct: 175 HFVVVGGGPTGVEFAAELA-DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKY 233

Query: 169 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 228
            +  L    VD++    V            +   G+ I        TG  VG   L    
Sbjct: 234 GQRRLRRLGVDIRTKTAV----KEVLDKEVVLKDGEVIPTGLVVWSTG--VGPGPLTKQ- 286

Query: 229 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 262
           LK    + G + VD++LRVK   N+FA+GD    
Sbjct: 287 LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320

Length = 424

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 55/289 (19%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLIDPKEY---FEITWASLRAMVEPSFGKR 65
           K K ++++GGG A ++ A SL    F+ ++ L    E    +E    S   ++E S   +
Sbjct: 2   KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFS-DERHLPYERPPLSKSMLLEDSPQLQ 60

Query: 66  SVINHTDYLVN------GRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVP-- 116
            V+    +  N      G  + +  +     E++   G    +D L IATG    P+P  
Sbjct: 61  QVLPANWWQENNVHLHSGVTIKT--LGRDTRELVLTNGESWHWDQLFIATGAAARPLPLL 118

Query: 117 --------KTRT----ERLNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKG 154
                     R      RL +            AG  G+ELA   A      KVT++   
Sbjct: 119 DALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS-ATQR-RCKVTVIELA 176

Query: 155 SRLLEFIGPKAGDKTRDWLISK--KVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCH 211
           + ++   G  A    + +L+ +  +  V++     ++ V +G    LT  +G+T+ AD  
Sbjct: 177 ATVM---GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVV 233

Query: 212 FLCTGKPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDI 259
               G         D + +++ LDT   +++DE  R      IFA GD+
Sbjct: 234 IYGIGIS-----ANDQLAREANLDTANGIVIDEACRT-CDPAIFAGGDV 276

Length = 396

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 31/203 (15%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLNQY----Q 127
           +      T E     YDYL+++ G    VP                  T+ + QY    +
Sbjct: 77  VVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNK 136

Query: 128 AGPTGVELAGEIAVDFPE------KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDV 180
                +   G I ++  E      K VTL+H+  R+L +    +      + L   ++++
Sbjct: 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINL 196

Query: 181 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLM 240
           +L E V  DS+       + ++G    AD   L TG    S+  KD+ LK  L   G + 
Sbjct: 197 RLNEEV--DSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLK--LGETGAIW 252

Query: 241 VDENLRVKGQKNIFAIGDITDIR 263
           V+E  +     NI+A GD+ +  
Sbjct: 253 VNEKFQTS-VPNIYAAGDVAESH 274

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 8   QSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRS 66
           +     KRVVV+GGG  G  +A +L +   +VT+++ ++        L    +       
Sbjct: 137 ELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRL------LARADDEISAALL 190

Query: 67  VINHTDYLVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER 122
                  L    ++    +    +    EV   +G  +  D +++A G +       TE 
Sbjct: 191 EKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRP-----NTEL 245

Query: 123 LNQYQAGPTGVELA--GEIAVD 142
           L Q      GVEL   G I VD
Sbjct: 246 LEQ-----AGVELDERGYIVVD 262

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 43.2 bits (103), Expect = 8e-05
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 45/209 (21%)

Query: 87  ITENEVLTAEGRRVVYDYLVIATGHKDP-VPK----------TRTERLNQYQ-------- 127
             +   +   G R+    +VIATG + P +P           T  +     +        
Sbjct: 116 FVDPNTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVI 175

Query: 128 -AGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 180
             G  G+EL       G         KVT+  +G R+L    P+   + +  ++SK+  +
Sbjct: 176 GGGVIGLELGQALSRLG--------VKVTVFERGDRILPLEDPEVSKQAQK-ILSKEFKI 226

Query: 181 KLGERVNLDSVSEGSD---TYLTSTGD--TINADCHFLCTG-KPVGSDWLKDTILKDSLD 234
           KLG +V   SV +  D     L   G   TI AD   + TG +P  +D L        LD
Sbjct: 227 KLGAKV--TSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN-TDGLGLENTGIELD 283

Query: 235 THGMLMVDENLRVKGQKNIFAIGDITDIR 263
             G  +VDE+ +      I+A GD+    
Sbjct: 284 ERGRPVVDEHTQ-TSVPGIYAAGDVNGKP 311

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 128 AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN 187
            G  G+E A          KVT+V +  RLL     +     ++ L    ++V L   V 
Sbjct: 7   GGYIGLEFA-SALAKL-GSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVE 64

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFE---ITWA 52
          K KRV+V+GGG VA   +   L+  A VT++ P+       +   
Sbjct: 6  KGKRVLVVGGGEVALRKIRALLEAGAKVTVVSPEILEAEGLVRLI 50

This domain is found in fungi, plants, archaea and bacteria. Length = 104

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVAKSLQF-------SADVTLIDPKEYFEITWASLRA 56
                  G   R+ V+GGG AG  +A +L+           VTLI          A +R 
Sbjct: 137 ESADAPPGTK-RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRR 195

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114
           +V     +R +  H           +P     +  ++ A+GR +  D ++ ATG + P
Sbjct: 196 LVLRLLARRGIEVHEG---------APVTRGPDGALILADGRTLPADAILWATGARAP 244

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 49/208 (23%)

Query: 88  TENEVLTAEGRRVVYDYLVIATGHKDPVP-----------------KTRTERLNQYQ--- 127
            E +V+ ++G +  YD LV+ATG    VP                 +    +L   Q   
Sbjct: 86  AEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVL 145

Query: 128 ---AGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGDKTRDWLISKKVD 179
               G  G ELA ++      K VTLV   + LL       +  +   +    L    V 
Sbjct: 146 VVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLASLMPPEVSSRLQHR----LTEMGVH 199

Query: 180 VKLGERVNLDSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTIL--KDSLD 234
           + L  ++    + +          +G +I  D      G +P       +T L  +  L 
Sbjct: 200 LLLKSQLQ--GLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP-------NTALARRAGLA 250

Query: 235 THGMLMVDENLRVKGQKNIFAIGDITDI 262
            +  ++VD  L+     +I+A+GD  +I
Sbjct: 251 VNRGIVVDSYLQTS-APDIYALGDCAEI 277

Length = 377

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 63/302 (20%), Positives = 107/302 (35%), Gaps = 77/302 (25%)

Query: 14  KRVVVIGGGVAG-SLVAKS--LQFSADVTLIDPKEYFEITWAS----------------L 54
            ++++IGG  AG S  AK+  L    ++T+ +  +   +++ +                +
Sbjct: 1   MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI--VSFGACGLPYFVGGFFDDPNTM 58

Query: 55  RAMVEPSFGKRSV---INHTDYLV---NGRIVASPAINITENEVLTAEGRRVVYDYLVIA 108
            A     F K  +     H    V   N  I      N+    +         YD L+IA
Sbjct: 59  IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVK---NLKTGSIFNDT-----YDKLMIA 110

Query: 109 TGHKDPVP---------------------------KTRTERLNQYQAGPTGVELAGEIAV 141
           TG +  +P                               + +    AG  G+E   E A 
Sbjct: 111 TGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAV-EAAK 169

Query: 142 DFPEKKVTLVHKGSRLLEFIGPKAGDK-----TRDWLISKKVDVKLGERVNLDSVSEGSD 196
               K V ++    R+L    P + DK       + L    V++ L E V    + E   
Sbjct: 170 HL-GKNVRIIQLEDRIL----PDSFDKEITDVMEEELRENGVELHLNEFV-KSLIGEDKV 223

Query: 197 TYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 256
             + +      AD   + TG    +++L+DT LK     +G ++VDE       +NI+A 
Sbjct: 224 EGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLK--TLKNGAIIVDEYGETS-IENIYAA 280

Query: 257 GD 258
           GD
Sbjct: 281 GD 282

Length = 444

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLID 42
           +    K +   +IGGG+AG+ +A +L      VTL +
Sbjct: 254 RPGSPKARDAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 147 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 206
           +VT+V++  RLL  +     ++  + L SK+ DV+LG  V   S      T     G T+
Sbjct: 191 RVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTV 249

Query: 207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
            AD   + TG+    D L        +D  G ++VDE  R    + +FA+GD++ 
Sbjct: 250 EADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSS 303

Length = 451

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 49/220 (22%)

Query: 77  GRIV----ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPV----------------- 115
           GRI+     SP       E  T E   ++ + L+IATG + PV                 
Sbjct: 114 GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR-PVELPGLPFDGEYVISSDE 172

Query: 116 ---PKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-----EFIGPKAGD 167
               +T  + L     G  G+E A  +A DF   +VT+V    R+L     E     A  
Sbjct: 173 ALSLETLPKSLVIVGGGVIGLEWASMLA-DF-GVEVTVVEAADRILPTEDAELSKEVA-- 228

Query: 168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTG-KPVGSD 222
                L    V V  G +V   ++ +     + +  +    T+ AD   +  G +P    
Sbjct: 229 ---RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285

Query: 223 W-LKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDIT 260
             L++T     +D   G + +D+  + K +++I+AIGD+ 
Sbjct: 286 IGLENT----DIDVEGGFIQIDDFCQTK-ERHIYAIGDVI 320

Length = 472

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 34/196 (17%)

Query: 86  NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQY----QAG 129
           N   NE          YD L+++ G                     T+ ++Q+    Q  
Sbjct: 95  NRKTNEQFEES-----YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVD 149

Query: 130 PTGVELAGEIAVDFPEK------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG 183
              V  AG I+++  E         TL+H+  ++ + +         D L  +++  +L 
Sbjct: 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLN 209

Query: 184 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
           E +  D+++    T+   +G   + D      G    S +++ + +K  LD  G + V++
Sbjct: 210 EEI--DAINGNEVTF--KSGKVEHYDMIIEGVGTHPNSKFIESSNIK--LDDKGFIPVND 263

Query: 244 NLRVKGQKNIFAIGDI 259
                   NI+AIGDI
Sbjct: 264 KFETN-VPNIYAIGDI 278

Length = 438

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYF--EITWASLRAMVEPSFGKRSVINH 70
           K VVV+G G  G   A++       VTLI+  +    ++    +   +     K  V   
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELL 196

Query: 71  TDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK 112
               V G  V      +    V+  +G  +  D ++I  G +
Sbjct: 197 LGTKVVG--VEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236

Length = 415

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 27/206 (13%)

Query: 76  NGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK----------TRTERLNQ 125
             R      + +  ++      R +  D  +IATG    +P           T TE L  
Sbjct: 128 YARFKDGNTLVVRLHD---GGERVLAADRCLIATGSTPTIPPIPGLMDTPYWTSTEALFS 184

Query: 126 YQAGPTGVELAG------EIAVDFPE--KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 177
               P  + + G      EIA  +     +VT++ + S LL    P  G+        + 
Sbjct: 185 -DELPASLTVIGSSVVAAEIAQAYARLGSRVTILAR-STLLFREDPLLGETLTACFEKEG 242

Query: 178 VDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTH 236
           ++V    + +L  V    + ++ +TG   + A+   + TG+   +  L    +  + DT 
Sbjct: 243 IEVLNNTQASL--VEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTS 300

Query: 237 GMLMVDENLRVKGQKNIFAIGDITDI 262
           G ++V+  +      +I+A GD +D+
Sbjct: 301 GAIVVNPAMETS-APDIYAAGDCSDL 325

Length = 479

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 61/154 (39%)

Query: 17  VVIGGGVAGSLVAKSLQFSA-----DVTLIDPKE------YF--------------EIT- 50
            +IG G  G  V + L   A     D+T+ DP        +               +++ 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVWRTDQPPQLLLNTPAAQMSL 60

Query: 51  ----------WASLRAMVEPSFGK-----RSVINHTDYL--------------VNGRIVA 81
                     W   +   E          R++     YL              V  R+  
Sbjct: 61  FPDDPPSFLEWLEAQGEEEAGLDPDDFPPRALFGE--YLRWRFSELLARAPAGVTVRVHR 118

Query: 82  SPAINITEN----EVLTAEGRRVVYDYLVIATGH 111
           +  +++        V  A+G  +  D +V+ATGH
Sbjct: 119 AEVVDLRPRGGGYTVTLADGATLRADAVVLATGH 152

Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PLN02546	558	glutathione reductase	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.98
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.98
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.98
PTZ00052	499	thioredoxin reductase; Provisional	99.98
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.97
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.97
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.97
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.97
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.97
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.97
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.96
PRK10262	321	thioredoxin reductase; Provisional	99.96
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.96
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.96
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.96
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.95
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.95
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.95
PRK12831	464	putative oxidoreductase; Provisional	99.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.94
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.94
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.94
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.93
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.93
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.93
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.92
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.92
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.91
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.9
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.9
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.9
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.89
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.87
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.87
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.87
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.87
PRK13984	604	putative oxidoreductase; Provisional	99.87
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.87
PLN02852	491	ferredoxin-NADP+ reductase	99.85
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.85
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.85
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.83
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.82
KOG2755	334	consensus Oxidoreductase [General function predict	99.8
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.77
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.74
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.73
COG2081	408	Predicted flavoproteins [General function predicti	99.71
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.68
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.64
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.6
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.59
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.56
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.53
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.53
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.53
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.5
PRK10157	428	putative oxidoreductase FixC; Provisional	99.38
PTZ00188	506	adrenodoxin reductase; Provisional	99.37
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.37
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.37
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.34
PRK06847	375	hypothetical protein; Provisional	99.33
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.33
PRK10015	429	oxidoreductase; Provisional	99.33
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.3
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.29
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.29
COG0579	429	Predicted dehydrogenase [General function predicti	99.28
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.26
PRK08163	396	salicylate hydroxylase; Provisional	99.24
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.23
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.23
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.22
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.22
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.21
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.21
PLN02463	447	lycopene beta cyclase	99.2
PRK07190	487	hypothetical protein; Provisional	99.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.2
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.19
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.19
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.19
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.19
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.18
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.18
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.17
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.17
PRK07233	434	hypothetical protein; Provisional	99.16
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.16
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.16
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.16
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.15
PRK08013	400	oxidoreductase; Provisional	99.15
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.15
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.14
PRK09126	392	hypothetical protein; Provisional	99.14
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.14
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.13
PRK05868	372	hypothetical protein; Validated	99.12
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.11
PRK07588	391	hypothetical protein; Provisional	99.11
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.11
PRK06834	488	hypothetical protein; Provisional	99.11
PRK06184	502	hypothetical protein; Provisional	99.11
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.08
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.08
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.08
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.08
PRK05257	494	malate:quinone oxidoreductase; Validated	99.08
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.07
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.07
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.06
PRK08274	466	tricarballylate dehydrogenase; Validated	99.06
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.06
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.06
PRK06753	373	hypothetical protein; Provisional	99.05
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.05
PRK08244	493	hypothetical protein; Provisional	99.05
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.05
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.04
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.03
PRK07236	386	hypothetical protein; Provisional	99.03
PRK06185	407	hypothetical protein; Provisional	99.03
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.03
PRK09897	534	hypothetical protein; Provisional	99.02
PRK07045	388	putative monooxygenase; Reviewed	99.02
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.02
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.02
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.01
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.01
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.0
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.0
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.0
PRK06996	398	hypothetical protein; Provisional	99.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.0
PLN02697	529	lycopene epsilon cyclase	99.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.98
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.97
PRK06475	400	salicylate hydroxylase; Provisional	98.97
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.97
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.97
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.96
PRK06175	433	L-aspartate oxidase; Provisional	98.96
PRK11445	351	putative oxidoreductase; Provisional	98.94
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.93
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.92
PRK07804	541	L-aspartate oxidase; Provisional	98.92
PLN02661	357	Putative thiazole synthesis	98.92
PRK06126	545	hypothetical protein; Provisional	98.91
PLN02612	567	phytoene desaturase	98.91
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.9
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.89
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.88
PRK07121	492	hypothetical protein; Validated	98.87
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.87
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.87
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.87
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.86
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.86
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.84
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.83
PRK08401	466	L-aspartate oxidase; Provisional	98.83
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.83
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.82
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.82
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.82
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.81
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.81
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.81
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PLN02676	487	polyamine oxidase	98.8
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.8
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.8
PRK07538	413	hypothetical protein; Provisional	98.79
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.79
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
PLN02487	569	zeta-carotene desaturase	98.79
PRK07395	553	L-aspartate oxidase; Provisional	98.78
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.78
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.77
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.76
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.75
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.75
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK08071	510	L-aspartate oxidase; Provisional	98.72
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.71
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.71
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.7
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.68
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.67
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.66
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.64
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.64
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.64
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.63
PRK08275	554	putative oxidoreductase; Provisional	98.62
PRK09077	536	L-aspartate oxidase; Provisional	98.62
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.62
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.61
PLN02815	594	L-aspartate oxidase	98.6
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.6
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.58
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.58
PRK07512	513	L-aspartate oxidase; Provisional	98.57
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.57
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.56
PRK07208	479	hypothetical protein; Provisional	98.54
PRK12839	572	hypothetical protein; Provisional	98.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.54
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.53
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.51
COG3349	485	Uncharacterized conserved protein [Function unknow	98.49
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.47
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.46
PLN02268	435	probable polyamine oxidase	98.45
PLN02576	496	protoporphyrinogen oxidase	98.42
KOG2853	509	consensus Possible oxidoreductase [General functio	98.42
PLN02568	539	polyamine oxidase	98.42
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.39
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.39
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.37
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.33
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.33
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.32
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.29
PTZ00367	567	squalene epoxidase; Provisional	98.29
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.25
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.24
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.24
PLN02985	514	squalene monooxygenase	98.24
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.2
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.16
PRK08294	634	phenol 2-monooxygenase; Provisional	98.13
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.11
PLN02529	738	lysine-specific histone demethylase 1	98.09
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.06
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.06
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.05
KOG2852	380	consensus Possible oxidoreductase [General functio	98.04
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.03
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.01
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.01
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.0
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.99
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.99
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.98
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.96
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.94
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.94
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.94
PRK06116	450	glutathione reductase; Validated	97.93
PRK07846	451	mycothione reductase; Reviewed	97.93
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.9
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.89
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.89
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.88
PRK02106	560	choline dehydrogenase; Validated	97.85
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.85
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.82
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.82
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.82
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.82
PLN03000	881	amine oxidase	97.81
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.79
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.79
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.78
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.78
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.77
PLN02976	1713	amine oxidase	97.76
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.76
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.75
PLN02507	499	glutathione reductase	97.74
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.73
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.73
PRK06370	463	mercuric reductase; Validated	97.73
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.71
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.71
TIGR02053	463	MerA mercuric reductase. This model represents the	97.7
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.67
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.66
PTZ00058	561	glutathione reductase; Provisional	97.65
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.65
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.64
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.63
PRK14694	468	putative mercuric reductase; Provisional	97.63
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.62
PTZ00052	499	thioredoxin reductase; Provisional	97.59
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.56
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.54
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.51
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.49
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.47
PLN02785	587	Protein HOTHEAD	97.43
PLN02546	558	glutathione reductase	97.43
PRK13748	561	putative mercuric reductase; Provisional	97.42
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.42
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.38
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.37
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.36
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.34
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.3
COG3573	552	Predicted oxidoreductase [General function predict	97.3
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.27
PRK14727	479	putative mercuric reductase; Provisional	97.26
PRK10262	321	thioredoxin reductase; Provisional	97.25
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.24
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.04
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.0
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.98
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.98
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.91
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.87
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.72
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.71
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	96.67
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.64
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.59
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.59
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.57
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.48
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.37
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.36
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.35
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.33
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.28
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.25
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.25
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.24
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.15
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.14
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.13
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	96.1
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.05
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.97
PLN02852	491	ferredoxin-NADP+ reductase	95.92
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.89
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.88
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.86
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.85
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.85
PRK12831	464	putative oxidoreductase; Provisional	95.82
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.79
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.76
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.75
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.71
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.54
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.51
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.45
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.41
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.32
PRK04148	134	hypothetical protein; Provisional	95.3
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.28
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	95.27
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.23
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.21
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.18
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.18
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.17
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.16
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.11
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	95.11
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.08
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.05
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.05
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.03
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.97
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.87
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.87
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.84
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.83
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.74
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.71
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	94.67
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.67
PTZ00188	506	adrenodoxin reductase; Provisional	94.63
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	94.56
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.55
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.55
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.46
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.44
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	94.42
PLN02268	435	probable polyamine oxidase	94.41
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.4
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.4
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.37
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	94.36
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.35
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.35
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.29
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.27
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.25
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.23
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.14
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	94.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.12
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.09
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.07
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.96
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.96
PRK06223	307	malate dehydrogenase; Reviewed	93.94
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.84
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.82
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.81
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.78
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.77
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.77
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.69
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.64
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.58
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.55
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.52
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.44
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.35
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.31
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.29
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.27
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.25
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	93.23
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.21
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.18
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.16
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	93.12
PLN02494	477	adenosylhomocysteinase	93.08
PTZ00117	319	malate dehydrogenase; Provisional	93.08
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.01
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.0
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.0
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.95
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.84
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.77
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.75
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.72
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	92.72
PRK07417	279	arogenate dehydrogenase; Reviewed	92.64
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.63
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.58
PRK10669	558	putative cation:proton antiport protein; Provision	92.51
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.47
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	92.47
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	92.47
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.43
PRK09496	453	trkA potassium transporter peripheral membrane com	92.4

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=3.9e-36  Score=250.18  Aligned_cols=258  Identities=23%  Similarity=0.294  Sum_probs=202.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeec--------------C-C-----------cccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV--------------E-P-----------SFGK   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~--------------~-~-----------~~~~   64 (274)
                      ++||++|||+||+|..+|..+++ |.+|.++|+...+|++.-......              . .           .+..
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~   82 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence            46999999999999999999974 888999999977765542221100              0 0           0000


Q ss_pred             ceeeecc------------cc--ccccEEEEEeeEEEecCeEEeCC--CeEEecCEEEEccCCCCCCChh---H------
Q 023975           65 RSVINHT------------DY--LVNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPKT---R------  119 (274)
Q Consensus        65 ~~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~li~a~G~~~~~~~~---~------  119 (274)
                      .....+.            .+  ..+++++.+.....+++.+....  .+++.++++++|||++|..|+.   +      
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~  162 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILD  162 (454)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEe
Confidence            0000000            01  12578888888888877777655  4789999999999999876651   1      


Q ss_pred             ----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 ----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                                .+++..+++|+.|+|+|..+.  ..|.+|+++.+.++++|.+++++.+.+.+.+++.|+++.+++.++.+
T Consensus       163 s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~  240 (454)
T COG1249         163 SSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV  240 (454)
T ss_pred             chhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence                      122333556999999999999  78999999999999999999999999999999989999999999999


Q ss_pred             ccCCCceeEECCCCc--EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          190 SVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      +..++.+.+.+++|+  ++++|.|++|+|..||.+-+..+..++.++++|+|.||..++| +.|+|||+|||++.|.+++
T Consensus       241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~Lah  319 (454)
T COG1249         241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPMLAH  319 (454)
T ss_pred             EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcccHh
Confidence            877766778887776  7999999999999999997666666668899999999966776 8999999999998888887


Q ss_pred             CCCCC
Q 023975          268 MIFPQ  272 (274)
Q Consensus       268 ~~~~~  272 (274)
                      .+.+|
T Consensus       320 ~A~~e  324 (454)
T COG1249         320 VAMAE  324 (454)
T ss_pred             HHHHH
Confidence            77655

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1e-35  Score=253.37  Aligned_cols=253  Identities=22%  Similarity=0.303  Sum_probs=189.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------c---------C---Cccccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------V---------E---PSFGKR   65 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~---------~---~~~~~~   65 (274)
                      +|||+||||||+|++||..|+ .|++|+|+|+. .+|+.+......              .         .   ......
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA   82 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence            589999999999999999998 49999999986 566543211000              0         0   000000


Q ss_pred             eeeec------------cccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH-----------
Q 023975           66 SVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-----------  120 (274)
Q Consensus        66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~-----------  120 (274)
                      .....            .+.+  .+++++...+..++.+.+.+ ++.++.||++|+|||+.|..|+.+.           
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  161 (450)
T PRK06116         83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGFF  161 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHhh
Confidence            00000            0001  25677777777777777777 6778999999999999976655321           


Q ss_pred             ------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975          121 ------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  194 (274)
Q Consensus       121 ------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  194 (274)
                            +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.|++++.+++|.+++.+++
T Consensus       162 ~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~  239 (450)
T PRK06116        162 ALEELPKRVAVVGAGYIAVEFAGVLN--GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD  239 (450)
T ss_pred             CccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC
Confidence                  11223455999999999988  5689999999998888888888999999999999999999999999986544


Q ss_pred             c-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975          195 S-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF  270 (274)
Q Consensus       195 ~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~  270 (274)
                      . +.+.+.+|+++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+.
T Consensus       240 g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~A~  315 (450)
T PRK06116        240 GSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELTPVAI  315 (450)
T ss_pred             ceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcHHHHH
Confidence            4 6677888889999999999999999886543334446778899999999998 8999999999997665544433

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=2.8e-35  Score=251.66  Aligned_cols=256  Identities=25%  Similarity=0.299  Sum_probs=191.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC----------------Ccc---ccceeeecc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE----------------PSF---GKRSVINHT   71 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~----------------~~~---~~~~~~~~~   71 (274)
                      .+|||+||||||+|+++|+.|+ .|++|+|+|+.+.+|+.+........                ..+   .......+.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA   83 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence            4599999999999999999997 49999999998888866532211000                000   000000000


Q ss_pred             ------------------cc--ccccEEEEEeeEEEecCe--EEeCCCe--EEecCEEEEccCCCCCCChhH--------
Q 023975           72 ------------------DY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR--------  119 (274)
Q Consensus        72 ------------------~~--~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~~~li~a~G~~~~~~~~~--------  119 (274)
                                        +.  ..+++++......++.+.  +...++.  .+.||++|+|||+.|..|+..        
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v~  163 (461)
T PRK05249         84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIY  163 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeEE
Confidence                              00  124666666666566553  4444553  789999999999997765411        


Q ss_pred             -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                       .          +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+++.|++++.++++++
T Consensus       164 ~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~  241 (461)
T PRK05249        164 DSDSILSLDHLPRSLIIYGAGVIGCEYASIFA--ALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEK  241 (461)
T ss_pred             cHHHhhchhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence             1          22333456999999999998  6789999999999999988999999999999999999999999999


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      ++.+++.+.+++.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...+.
T Consensus       242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~~~  320 (461)
T PRK05249        242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLASA  320 (461)
T ss_pred             EEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccHhH
Confidence            98666666777778889999999999999999886543444446778899999999998 89999999999987766544


Q ss_pred             CC
Q 023975          269 IF  270 (274)
Q Consensus       269 ~~  270 (274)
                      +.
T Consensus       321 A~  322 (461)
T PRK05249        321 SM  322 (461)
T ss_pred             HH
Confidence            43

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=5.9e-35  Score=248.13  Aligned_cols=256  Identities=23%  Similarity=0.279  Sum_probs=188.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-ceeeccceeeecC----------Ccccc-----cee---ee---
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAMVE----------PSFGK-----RSV---IN---   69 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~-~g~~~~~~~~~~~----------~~~~~-----~~~---~~---   69 (274)
                      .|||+||||||+|++||..|+ .|++|+|+|+.+. +|+.+........          ..+..     +..   ..   
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN   82 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence            489999999999999999998 4999999999763 6765532111100          00000     000   00   


Q ss_pred             ccc--cccccEEEEEeeEEEecC--eEEeCCCe-EEecCEEEEccCCCCCCChhHH----------H----------HHH
Q 023975           70 HTD--YLVNGRIVASPAINITEN--EVLTAEGR-RVVYDYLVIATGHKDPVPKTRT----------E----------RLN  124 (274)
Q Consensus        70 ~~~--~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~li~a~G~~~~~~~~~~----------~----------~~~  124 (274)
                      ...  ...+++++.+....++.+  .+.+.++. ++.||++|+|||+.|..|+.+.          .          ++.
T Consensus        83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~  162 (441)
T PRK08010         83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG  162 (441)
T ss_pred             HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence            001  112567777776666655  44455664 6999999999999865544221          1          112


Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD  204 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~  204 (274)
                      .+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||++++++.+++++.+++.+.+.++++ 
T Consensus       163 ViGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-  239 (441)
T PRK08010        163 ILGGGYIGVEFASMFA--NFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-  239 (441)
T ss_pred             EECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence            2344889999999998  5789999999999888888888999999999999999999999999987665566665555 


Q ss_pred             EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975          205 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ  272 (274)
Q Consensus       205 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~  272 (274)
                      ++.+|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+.+.+.+|
T Consensus       240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a~~~  306 (441)
T PRK08010        240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYISLDD  306 (441)
T ss_pred             eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHHHHH
Confidence            5899999999999999887654444446778899999999999 899999999999987766655443

>PLN02507 glutathione reductase

Probab=100.00  E-value=4.6e-35  Score=250.63  Aligned_cols=257  Identities=21%  Similarity=0.221  Sum_probs=190.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcC---------CCCceeeccceeee----------------------cC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP---------KEYFEITWASLRAM----------------------VE   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~---------~~~~g~~~~~~~~~----------------------~~   59 (274)
                      .+||++||||||+|+.+|..++ .|.+|+|+|+         ...+|+.+......                      ..
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~  103 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE  103 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3689999999999999999997 5999999996         24566554221000                      00


Q ss_pred             ----Cccccceeeec------------ccc--ccccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCCh
Q 023975           60 ----PSFGKRSVINH------------TDY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        60 ----~~~~~~~~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~  117 (274)
                          ..+........            ...  ..+++++...+..++.+  .+.+.+|.  .+.||+||+|||+.|..|.
T Consensus       104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p~  183 (499)
T PLN02507        104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPN  183 (499)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCCC
Confidence                00000000000            000  13577788877777766  44555664  5889999999999866544


Q ss_pred             hHH-----------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEE
Q 023975          118 TRT-----------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  180 (274)
Q Consensus       118 ~~~-----------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  180 (274)
                      .+.                 +++..+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+...+.+.+++.||++
T Consensus       184 ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i  261 (499)
T PLN02507        184 IPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWR--GMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINL  261 (499)
T ss_pred             CCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEE
Confidence            221                 11223445999999999988  67899999999988888888889999999999999999


Q ss_pred             EcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          181 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       181 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      +.++.|++++.+++.+.+.+.+|+++++|.|++++|+.|+.+++.....++.++++|++.||++++| +.|+|||+|||+
T Consensus       262 ~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~  340 (499)
T PLN02507        262 HPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVT  340 (499)
T ss_pred             EeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcC
Confidence            9999999998666667777888889999999999999999887543333446778899999999998 899999999999


Q ss_pred             CCCCCCCCCCC
Q 023975          261 DIRVSASMIFP  271 (274)
Q Consensus       261 ~~~~~~~~~~~  271 (274)
                      +.+...+.+..
T Consensus       341 ~~~~l~~~A~~  351 (499)
T PLN02507        341 NRINLTPVALM  351 (499)
T ss_pred             CCCccHHHHHH
Confidence            87766554443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=3.2e-35  Score=249.61  Aligned_cols=256  Identities=19%  Similarity=0.211  Sum_probs=188.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec------------------------C-Cccccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV------------------------E-PSFGKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~------------------------~-~~~~~~~   66 (274)
                      +|||+||||||+|++||..++ +|++|+|+|+. .+|+.........                        . ..+....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK   80 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence            589999999999999999997 59999999985 5665432110000                        0 0000000


Q ss_pred             e--------ee----ccccc--cccEEEEEeeEEEecCeEEe-CCCeEEecCEEEEccCCCCCCChhHH-------H---
Q 023975           67 V--------IN----HTDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRT-------E---  121 (274)
Q Consensus        67 ~--------~~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~li~a~G~~~~~~~~~~-------~---  121 (274)
                      .        ..    ....+  .+++++...+..++.+.+.. .++..+.||++|+|||+.|..|+.+.       .   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~  160 (446)
T TIGR01424        81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF  160 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence            0        00    00111  25677777776676654433 45678999999999999976554221       1   


Q ss_pred             -------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975          122 -------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  194 (274)
Q Consensus       122 -------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  194 (274)
                             ++..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+++.|++++.++.+.+++.+++
T Consensus       161 ~l~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  238 (446)
T TIGR01424       161 HLPTLPKSILILGGGYIAVEFAGIWR--GLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD  238 (446)
T ss_pred             cccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence                   1122345899999999988  6789999999999888888888888999999999999999999999986656


Q ss_pred             ceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975          195 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ  272 (274)
Q Consensus       195 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~  272 (274)
                      ...+.+.+|+++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+..|
T Consensus       239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~A~~~  315 (446)
T TIGR01424       239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTPVAIME  315 (446)
T ss_pred             eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchhHHHHH
Confidence            66777778889999999999999999876543334446778899999999999 899999999999876666554433

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=7.9e-35  Score=246.98  Aligned_cols=253  Identities=19%  Similarity=0.194  Sum_probs=187.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec----------------------CCc----cccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV----------------------EPS----FGKR   65 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~----------------------~~~----~~~~   65 (274)
                      +|||+||||||+|++||..|+ .|++|+|+||. .+|+.+.......                      ...    ....
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP   80 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence            589999999999999999998 59999999996 4665432110000                      000    0000


Q ss_pred             eeee------------ccccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCC-hhHH-------HH-
Q 023975           66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTRT-------ER-  122 (274)
Q Consensus        66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~-~~~~-------~~-  122 (274)
                      ....            ....+  .+++++.......+.+.+.. ++..+.||++|+|||+.|..| +.+.       .. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~  159 (450)
T TIGR01421        81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF  159 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence            0000            00001  24666666665555555655 466899999999999997666 3221       12 


Q ss_pred             ---------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          123 ---------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       123 ---------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                               +..+++|.+|+|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||++++++.+++++.+.
T Consensus       160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~  237 (450)
T TIGR01421       160 FALEELPKRVVIVGAGYIAVELAGVLH--GLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV  237 (450)
T ss_pred             hCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence                     222355999999999998  578999999999998888899999999999999999999999999997654


Q ss_pred             Cc-eeEECCCC-cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975          194 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF  270 (274)
Q Consensus       194 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~  270 (274)
                      +. ..+.+++| +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+||++|||++.+...+.+.
T Consensus       238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~~A~  315 (450)
T TIGR01421       238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTPVAI  315 (450)
T ss_pred             CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHHHHH
Confidence            33 56777777 57999999999999999987544444456788899999999998 8999999999998776655443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-34  Score=245.43  Aligned_cols=255  Identities=17%  Similarity=0.182  Sum_probs=188.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~   65 (274)
                      .+|||+||||||+|+++|..|++ |++|+|+|+.+.+|+.+........                         ..+...
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID   82 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            35999999999999999999985 9999999998777764421110000                         000000


Q ss_pred             eeeecc------------cc--ccccEEEEEeeEEEecCeEE--eCCC--eEEecCEEEEccCCCCC-CChhH-------
Q 023975           66 SVINHT------------DY--LVNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR-------  119 (274)
Q Consensus        66 ~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~~~li~a~G~~~~-~~~~~-------  119 (274)
                      ....+.            ..  ..+++++.......+.+.+.  ..++  .++.||++|+|||+.|. .|...       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~  162 (471)
T PRK06467         83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW  162 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence            000000            00  12577888777777766443  3345  47899999999999875 33211       


Q ss_pred             -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                       .          +++..+++|.+|+|+|..+.  ..+.+|+++.+.+.+++.+++.+...+.+.+++. +++++++.++.
T Consensus       163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~  239 (471)
T PRK06467        163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYH--RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA  239 (471)
T ss_pred             ChHHhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence             1          12233455999999999998  6789999999999999988999999999999888 99999999999


Q ss_pred             eccCCCceeEECCC--C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          189 DSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       189 i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++.+++.+.+.+.+  +  +++++|.||+++|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.|.
T Consensus       240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~  318 (471)
T PRK06467        240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM  318 (471)
T ss_pred             EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence            98666666665543  2  46999999999999999987655555557788999999999999 8999999999998776


Q ss_pred             CCCCCC
Q 023975          265 SASMIF  270 (274)
Q Consensus       265 ~~~~~~  270 (274)
                      ..+.+.
T Consensus       319 la~~A~  324 (471)
T PRK06467        319 LAHKGV  324 (471)
T ss_pred             cHHHHH
Confidence            554443

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=4.9e-34  Score=243.82  Aligned_cols=254  Identities=21%  Similarity=0.244  Sum_probs=183.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------------cC------Ccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------------VE------PSFGK   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------------~~------~~~~~   64 (274)
                      .++||+||||||+|+++|..|+ .|++|+|+|+.. +|+.+......                    ..      .....
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF   82 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence            4599999999999999999998 499999999864 44432211100                    00      00000


Q ss_pred             ceee------------eccccc---cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH---------
Q 023975           65 RSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------  120 (274)
Q Consensus        65 ~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~---------  120 (274)
                      ....            ....++   .+++++.......+.+.+.. ++.++.||++|+|||+.|..|+.+.         
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~~  161 (463)
T PRK06370         83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLTN  161 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEcc
Confidence            0000            001111   25677666666666666666 4567999999999999977655221         


Q ss_pred             ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                                +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.|+++++++.+.+++
T Consensus       162 ~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  239 (463)
T PRK06370        162 ETIFSLDELPEHLVIIGGGYIGLEFAQMFR--RFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVE  239 (463)
T ss_pred             hHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence                      11223445999999999998  568899999999998888888889999999999999999999999998


Q ss_pred             cCCCceeEEC--C-CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          191 VSEGSDTYLT--S-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       191 ~~~~~~~v~~--~-~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      .+++...+.+  . +++++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+
T Consensus       240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~~  318 (463)
T PRK06370        240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFTH  318 (463)
T ss_pred             EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccHH
Confidence            7655544433  2 3457999999999999999874422223336778899999999999 8999999999998776654


Q ss_pred             CCC
Q 023975          268 MIF  270 (274)
Q Consensus       268 ~~~  270 (274)
                      .+.
T Consensus       319 ~A~  321 (463)
T PRK06370        319 TAY  321 (463)
T ss_pred             HHH
Confidence            433

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=3.1e-33  Score=235.89  Aligned_cols=245  Identities=26%  Similarity=0.319  Sum_probs=182.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      .+++|+|||||++|+.+|..|.+ +++|+|||+++++.+.+.. ......... .....+..+.+  .+++++.+.+..+
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLL-PQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhH-HHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence            34799999999999999999975 7999999999886544321 111111111 11111111111  2467788887777


Q ss_pred             ec--CeEEe----------CCCeEEecCEEEEccCCCCCC---ChhHH---------------H----------------
Q 023975           88 TE--NEVLT----------AEGRRVVYDYLVIATGHKDPV---PKTRT---------------E----------------  121 (274)
Q Consensus        88 ~~--~~v~~----------~~~~~~~~~~li~a~G~~~~~---~~~~~---------------~----------------  121 (274)
                      +.  +.+.+          +++.++.||+||+|||+.+..   |+...               +                
T Consensus        88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~  167 (424)
T PTZ00318         88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV  167 (424)
T ss_pred             EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence            64  35655          466789999999999998543   43210               0                


Q ss_pred             -------HHHHccCCchhhhHHHHhhhhC------------CCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975          122 -------RLNQYQAGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  182 (274)
Q Consensus       122 -------~~~~~~~g~~~~e~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  182 (274)
                             .+..+++|.+|+|+|.++.+..            .+.+++++++.+.+++.+++.+.+.+.+.+++.||+++.
T Consensus       168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~  247 (424)
T PTZ00318        168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT  247 (424)
T ss_pred             HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence                   1122445899999999887421            367899999999888888888999999999999999999


Q ss_pred             CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      ++.|.++..+    .+.+++|+++++|.+|+++|..|+ +++...++  .++++|++.||++++++++|+|||+|||+..
T Consensus       248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~  320 (424)
T PTZ00318        248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN  320 (424)
T ss_pred             CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence            9999998643    467888999999999999999986 56665554  5677899999999997689999999999986


Q ss_pred             CC
Q 023975          263 RV  264 (274)
Q Consensus       263 ~~  264 (274)
                      +.
T Consensus       321 ~~  322 (424)
T PTZ00318        321 EE  322 (424)
T ss_pred             CC
Confidence            43

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=5.6e-34  Score=241.67  Aligned_cols=254  Identities=22%  Similarity=0.318  Sum_probs=188.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCceeecccee------------------e----ecC---Ccccc---
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR------------------A----MVE---PSFGK---   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~~~~~~~------------------~----~~~---~~~~~---   64 (274)
                      +||++||||||+|..+|..+ .|.+|+|+|+.. +|+..-...                  .    .+.   .....   
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~   78 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI   78 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence            38999999999999988664 599999999864 443221100                  0    000   00000   


Q ss_pred             --------ceeee-cccc----ccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhH---------HH-
Q 023975           65 --------RSVIN-HTDY----LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TE-  121 (274)
Q Consensus        65 --------~~~~~-~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------~~-  121 (274)
                              ..+.. ....    ..+++++.......+++.|.+.++.++.||++|+|||+.|..|+.+         .. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~  158 (451)
T PRK07846         79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDT  158 (451)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHH
Confidence                    00000 0111    1367788888877888888888787899999999999997665522         11 


Q ss_pred             ---------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          122 ---------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       122 ---------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                               ++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++++.+.+.+.+ +.++++++++++++++.+
T Consensus       159 ~~~l~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        159 IMRLPELPESLVIVGGGFIAAEFAHVFS--ALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEc
Confidence                     1122345999999999998  5789999999999988888888887776654 568999999999999866


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCCCC
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIFPQ  272 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~~~  272 (274)
                      ++.+.+.+.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+++.+..|
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~A~~~  314 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHVANHE  314 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhHHHHH
Confidence            6666777778889999999999999999998764445557778899999999998 899999999999887666554433

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=7e-34  Score=243.03  Aligned_cols=253  Identities=22%  Similarity=0.249  Sum_probs=185.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~   65 (274)
                      ..|||+||||||+|++||..|+ .|++|+|+|+.. +|+.+........                         ..+...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK   81 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence            4589999999999999999997 599999999987 7765432111000                         000000


Q ss_pred             eeeec------------ccc--ccccEEEEEeeEEEecCeEEeC---CCeEEecCEEEEccCCCCCCCh-hH--------
Q 023975           66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA---EGRRVVYDYLVIATGHKDPVPK-TR--------  119 (274)
Q Consensus        66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~li~a~G~~~~~~~-~~--------  119 (274)
                      ....+            ...  ..+++++...+..++.+.+...   ++..+.||++|+|||+.|..|+ ..        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~  161 (462)
T PRK06416         82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT  161 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence            00001            001  1256777777766666644442   2468999999999999975432 21        


Q ss_pred             H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      .          +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.|+++++++.|.++
T Consensus       162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i  239 (462)
T PRK06416        162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYA--SLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV  239 (462)
T ss_pred             chHhhCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence            0          12233445999999999998  56889999999999888888889999999999999999999999999


Q ss_pred             ccCCCceeEECCCC---cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          190 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       190 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +.+++.+.+.+.++   +++++|.||+|+|..|+.+++.....++.++ +|++.||++++| +.|+||++|||++.+...
T Consensus       240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~~  317 (462)
T PRK06416        240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPMLA  317 (462)
T ss_pred             EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcchH
Confidence            87666666666665   6799999999999999988763233333566 889999999998 899999999999766544


Q ss_pred             CCC
Q 023975          267 SMI  269 (274)
Q Consensus       267 ~~~  269 (274)
                      ..+
T Consensus       318 ~~A  320 (462)
T PRK06416        318 HKA  320 (462)
T ss_pred             HHH
Confidence            433

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=1.3e-33  Score=240.24  Aligned_cols=260  Identities=20%  Similarity=0.217  Sum_probs=190.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCC--------CCceeeccceee---------------------e-cC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPK--------EYFEITWASLRA---------------------M-VE   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~--------~~~g~~~~~~~~---------------------~-~~   59 (274)
                      ++|||+||||||+|..||..++ . |.+|+|+|+.        ..+|++.-....                     + +.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            4699999999999999999987 4 8999999984        456654311100                     0 00


Q ss_pred             -----Cccccceeeec------------cccc---cccEEEEEeeEEEecCeEEeCC--------CeEEecCEEEEccCC
Q 023975           60 -----PSFGKRSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH  111 (274)
Q Consensus        60 -----~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~li~a~G~  111 (274)
                           ..........+            ...+   .+++++.+.....+++.+....        ...+.||++|+|||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence                 00000000000            0112   3678888888777777655431        347999999999999


Q ss_pred             CCCCChhHH-----------------HHHHHccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCCcCChhHHHHHHHHH
Q 023975          112 KDPVPKTRT-----------------ERLNQYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL  173 (274)
Q Consensus       112 ~~~~~~~~~-----------------~~~~~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  173 (274)
                      .|..|+++.                 +.+..+++|.+|+|+|..+... ..+.+|+++.+.+.+++.+++.+.+.+.+.+
T Consensus       162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L  241 (486)
T TIGR01423       162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL  241 (486)
T ss_pred             CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence            976655321                 1122344599999999877521 2378999999999999989999999999999


Q ss_pred             HhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCC
Q 023975          174 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  252 (274)
Q Consensus       174 ~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  252 (274)
                      ++.|+++++++.+++++.+++. ..+.+.+|+++++|.|++|+|..|+..++.....++.++++|++.||++++| +.|+
T Consensus       242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~  320 (486)
T TIGR01423       242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN  320 (486)
T ss_pred             HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence            9999999999999999765443 5677777889999999999999999887654444446778899999999998 8999


Q ss_pred             eEEeccccCCCCCCCCCCCC
Q 023975          253 IFAIGDITDIRVSASMIFPQ  272 (274)
Q Consensus       253 i~~~Gd~~~~~~~~~~~~~~  272 (274)
                      |||+|||++.+...+.+..|
T Consensus       321 IyA~GDv~~~~~l~~~A~~q  340 (486)
T TIGR01423       321 IYAIGDVTDRVMLTPVAINE  340 (486)
T ss_pred             EEEeeecCCCcccHHHHHHH
Confidence            99999999987766655443

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=9.8e-33  Score=224.48  Aligned_cols=246  Identities=31%  Similarity=0.418  Sum_probs=187.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc---cccEEEEEeeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   86 (274)
                      +++|+|||||++|+.+|..|.+   +.+++++|++++.-..+-................++.+.+   .+++++.+++..
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~   82 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD   82 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence            4799999999999999999974   3899999999886544322221111111222223333322   257888888887


Q ss_pred             Eec--CeEEeCCCeEEecCEEEEccCCCCCCChhH------------------HHH-------------------HHHcc
Q 023975           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------------TER-------------------LNQYQ  127 (274)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------------~~~-------------------~~~~~  127 (274)
                      ++.  +.|.+.++..+.||+||+|+|+.+..++.+                  ..+                   +...+
T Consensus        83 ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvG  162 (405)
T COG1252          83 IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVG  162 (405)
T ss_pred             EcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEEC
Confidence            764  489998878899999999999985544311                  000                   11234


Q ss_pred             CCchhhhHHHHhhhhCC-----------CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce
Q 023975          128 AGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  196 (274)
Q Consensus       128 ~g~~~~e~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  196 (274)
                      +|.+|+|+|.+|.+...           ..+++++++.++++|.+++.+.+...+.|++.||++.+++.|++++.+    
T Consensus       163 gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----  238 (405)
T COG1252         163 GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----  238 (405)
T ss_pred             CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----
Confidence            49999999998875321           138899999999999999999999999999999999999999999854    


Q ss_pred             eEECCCCc-EEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          197 TYLTSTGD-TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       197 ~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .|.+.+|+ +|++|.+|+|+|.++ +++.+. .++  ..+..|++.||++++++++++||++|||+..+..
T Consensus       239 ~v~~~~g~~~I~~~tvvWaaGv~a-~~~~~~l~~~--e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~  306 (405)
T COG1252         239 GVTLKDGEEEIPADTVVWAAGVRA-SPLLKDLSGL--ETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP  306 (405)
T ss_pred             cEEEccCCeeEecCEEEEcCCCcC-ChhhhhcChh--hhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence            37777777 599999999999998 555655 243  5677899999999999999999999999988774

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=7.7e-34  Score=242.72  Aligned_cols=252  Identities=24%  Similarity=0.284  Sum_probs=184.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------cC-C---------ccccceee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------VE-P---------SFGKRSVI   68 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~~-~---------~~~~~~~~   68 (274)
                      |||+||||||+|+++|..|+ +|.+|+|+|+.. +|+.+......              .. .         ........
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL   79 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence            69999999999999999998 599999999976 66554221000              00 0         00000000


Q ss_pred             e-------------ccccc--cccEEEEEeeEEEecCeEEeCCC-eEEecCEEEEccCCCCCCChhHH------------
Q 023975           69 N-------------HTDYL--VNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATGHKDPVPKTRT------------  120 (274)
Q Consensus        69 ~-------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~li~a~G~~~~~~~~~~------------  120 (274)
                      .             ....+  .+++++.+.....+.+.+...++ ..+.+|++|+|||+.|..|+.+.            
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~  159 (463)
T TIGR02053        80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA  159 (463)
T ss_pred             HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence            0             01111  14677777776666777777665 36789999999999976554221            


Q ss_pred             -------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          121 -------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       121 -------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                             +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+...+.+.+++.||+++++++|++++.++
T Consensus       160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~  237 (463)
T TIGR02053       160 LALDRIPESLAVIGGGAIGVELAQAFA--RLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG  237 (463)
T ss_pred             hCcccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence                   12223455899999999998  568999999999998888888899999999999999999999999998765


Q ss_pred             CceeEECC---CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975          194 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  269 (274)
Q Consensus       194 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~  269 (274)
                      +...+.+.   +++++++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+...+.+
T Consensus       238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~~~A  315 (463)
T TIGR02053       238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLEYVA  315 (463)
T ss_pred             CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccHhHH
Confidence            55555443   2358999999999999999884322333345678899999999999 899999999999876654443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.3e-33  Score=238.25  Aligned_cols=252  Identities=18%  Similarity=0.222  Sum_probs=181.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-ceeeccceeeecCC--------ccccceeee------------c
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWASLRAMVEP--------SFGKRSVIN------------H   70 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~-~g~~~~~~~~~~~~--------~~~~~~~~~------------~   70 (274)
                      .|||+||||||+|++||..|+ +|++|+|+||.+. +|+...........        .........            .
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN   82 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999997 5999999999864 56543211100000        000000000            0


Q ss_pred             cccc--cccEEEEEeeEEEecCeEEeCC---CeEEecCEEEEccCCCCCCChhHH----------H----------HHHH
Q 023975           71 TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTRT----------E----------RLNQ  125 (274)
Q Consensus        71 ~~~~--~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~li~a~G~~~~~~~~~~----------~----------~~~~  125 (274)
                      .+.+  .+++++......++.+.+....   ...+.||++|+|||+.|..|+.+.          .          ++..
T Consensus        83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI  162 (438)
T PRK07251         83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI  162 (438)
T ss_pred             HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence            0111  2567777766666666555432   347899999999999865443211          1          1122


Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcE
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT  205 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~  205 (274)
                      +++|..++|+|..+.  ..+.+|+++.+.+.+++..++.+...+.+.+++.|+++++++++++++.+++.+.+. .++++
T Consensus       163 IGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~  239 (438)
T PRK07251        163 IGGGNIGLEFAGLYN--KLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET  239 (438)
T ss_pred             ECCCHHHHHHHHHHH--HcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence            344899999999998  578999999999998888888888888899999999999999999998655555444 45678


Q ss_pred             EeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          206 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       206 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      +++|.||+|+|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.+.....
T Consensus       240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~~  301 (438)
T PRK07251        240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTYI  301 (438)
T ss_pred             EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHhH
Confidence            999999999999999876544333445677899999999999 89999999999987655443

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=7.8e-33  Score=236.43  Aligned_cols=254  Identities=22%  Similarity=0.261  Sum_probs=184.3

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee-----------------------cC---Cc
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----------------------VE---PS   61 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~-----------------------~~---~~   61 (274)
                      |...++||+||||||+|+++|..|++ |.+|+|||+. .+|++|..-...                       +.   +.
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~   80 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV   80 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence            45568999999999999999999985 9999999986 466554321000                       00   00


Q ss_pred             cccceeee-------------ccc---cccccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-
Q 023975           62 FGKRSVIN-------------HTD---YLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT-  120 (274)
Q Consensus        62 ~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~-  120 (274)
                      ........             +..   ...+++++.+.+..++.+  .+.+.++  .+++||++|+|||+.|..|+++. 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~  160 (468)
T PRK14694         81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL  160 (468)
T ss_pred             cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence            00000000             000   112567777777777655  5555565  47999999999999976554221 


Q ss_pred             ------------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975          121 ------------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  182 (274)
Q Consensus       121 ------------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  182 (274)
                                        +++..+++|.+++|+|..+.  ..+.+++++.+ +.+++..++.+.+.+.+.+++.||+++.
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~--~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~  237 (468)
T PRK14694        161 AETPYLTSTSALELDHIPERLLVIGASVVALELAQAFA--RLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLK  237 (468)
T ss_pred             CCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence                              11222344899999999998  56889999986 4667777888999999999999999999


Q ss_pred             CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      ++.+.+++.+++.+.+.+.++ ++++|.||+|+|..|+.+++....+++.. ++|++.||++++| +.|+|||+|||++.
T Consensus       238 ~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~  314 (468)
T PRK14694        238 QTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ  314 (468)
T ss_pred             CCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC
Confidence            999999986665555655544 69999999999999998876443344444 5789999999999 89999999999987


Q ss_pred             CCCCCCC
Q 023975          263 RVSASMI  269 (274)
Q Consensus       263 ~~~~~~~  269 (274)
                      +...+.+
T Consensus       315 ~~~~~~A  321 (468)
T PRK14694        315 PQFVYVA  321 (468)
T ss_pred             cccHHHH
Confidence            7665444

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.1e-32  Score=235.88  Aligned_cols=254  Identities=20%  Similarity=0.235  Sum_probs=186.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee--------------c-C-C---------ccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------V-E-P---------SFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~--------------~-~-~---------~~~~~   65 (274)
                      .++|++|||||++|+++|..|++ |.+|+++|+.+.+|+.|......              . . +         .+...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   94 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG   94 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence            46899999999999999999985 99999999987888776432100              0 0 0         00000


Q ss_pred             eee-------------eccccc---cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-----
Q 023975           66 SVI-------------NHTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT-----  120 (274)
Q Consensus        66 ~~~-------------~~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~-----  120 (274)
                      ...             .+...+   .+++++.+.....+.+  .+...++  .++.||++|+|||+.|..|+++.     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~  174 (479)
T PRK14727         95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP  174 (479)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence            000             000111   1456666666556655  3444455  36899999999999976654321     


Q ss_pred             --------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          121 --------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       121 --------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                                    +++..+++|.+++|+|..+.  ..+.+|+++.+. .+++..++.+.+.+.+.+++.||++++++++
T Consensus       175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V  251 (479)
T PRK14727        175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYA--RLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA  251 (479)
T ss_pred             eecchHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence                          12223445999999999998  578999999874 5667778888999999999999999999999


Q ss_pred             eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +.++.+++.+.+.+.++ ++++|.|++|+|..|+..++.....++.++++|++.||++++| +.|+|||+|||++.|...
T Consensus       252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~  329 (479)
T PRK14727        252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV  329 (479)
T ss_pred             EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence            99986666666666655 6999999999999999887644444446778899999999999 899999999999887765


Q ss_pred             CCCC
Q 023975          267 SMIF  270 (274)
Q Consensus       267 ~~~~  270 (274)
                      +.+.
T Consensus       330 ~~A~  333 (479)
T PRK14727        330 YVAA  333 (479)
T ss_pred             hHHH
Confidence            5443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=1.2e-32  Score=233.32  Aligned_cols=240  Identities=16%  Similarity=0.271  Sum_probs=179.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeec--cccc--cccEEE-EEee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPA   84 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~   84 (274)
                      ++|+|||||++|+++|..|+   ++++|+|+|+++.+++....+......... .......  ..+.  .++++. ...+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            58999999999999999996   378999999998877554333333221111 1111111  1121  245553 3455


Q ss_pred             EEEec--CeEEeCCC-----eEEecCEEEEccCCCCCCChhH------------HH------------HHHHccCCchhh
Q 023975           85 INITE--NEVLTAEG-----RRVVYDYLVIATGHKDPVPKTR------------TE------------RLNQYQAGPTGV  133 (274)
Q Consensus        85 ~~~~~--~~v~~~~~-----~~~~~~~li~a~G~~~~~~~~~------------~~------------~~~~~~~g~~~~  133 (274)
                      ..++.  +.+.+.++     .++.||++|+|||+.|..|+.+            ..            ++..+++|.+|+
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~  161 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL  161 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence            55553  45555432     2468999999999998766532            11            112244599999


Q ss_pred             hHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEE
Q 023975          134 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  213 (274)
Q Consensus       134 e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  213 (274)
                      |+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.+++++.    ..+.+++|+++++|.|++
T Consensus       162 E~A~~l~--~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~  235 (438)
T PRK13512        162 EVLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE  235 (438)
T ss_pred             HHHHHHH--hCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence            9999998  6789999999999888888888999999999999999999999999863    246667788899999999


Q ss_pred             cccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          214 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       214 a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      |+|..|+.+++...++  .++++|++.||++++| +.|+|||+|||++.
T Consensus       236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~  281 (438)
T PRK13512        236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITS  281 (438)
T ss_pred             CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEe
Confidence            9999999998877665  5677899999999998 89999999999974

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=9.4e-33  Score=234.46  Aligned_cols=253  Identities=22%  Similarity=0.316  Sum_probs=186.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCceeecccee-----------------------eec-C-Cccc----
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLR-----------------------AMV-E-PSFG----   63 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~~~~~~~-----------------------~~~-~-~~~~----   63 (274)
                      +||++|||+||+|..+|..+ .|.+|+++|+.. +|++.-...                       ... . ....    
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~   79 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI   79 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence            58999999999999987554 599999999854 443321000                       000 0 0000    


Q ss_pred             --------cceeeec-ccc-c----cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChh-H--------H
Q 023975           64 --------KRSVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-R--------T  120 (274)
Q Consensus        64 --------~~~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~-~--------~  120 (274)
                              ....... ..+ .    .+++++.......+.+.+.+.++.+++||++|+|||+.|..|+. .        .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~  159 (452)
T TIGR03452        80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTN  159 (452)
T ss_pred             HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcH
Confidence                    0000000 111 1    46777777777777778888778789999999999999876651 1        1


Q ss_pred             ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                                +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+ +.++++++++.|++++
T Consensus       160 ~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~  236 (452)
T TIGR03452       160 EDIMRLPELPESLVIVGGGYIAAEFAHVFS--ALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVE  236 (452)
T ss_pred             HHHHhhhhcCCcEEEECCCHHHHHHHHHHH--hCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEE
Confidence                      11222345999999999998  6789999999998888878888887777655 4689999999999998


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF  270 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~  270 (274)
                      .+++.+.+.+.+|+++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+.+.+.+.
T Consensus       237 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~A~  315 (452)
T TIGR03452       237 QDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKHVAN  315 (452)
T ss_pred             EcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChhHHH
Confidence            766666777778889999999999999999988655444446778899999999998 8999999999998876665544


Q ss_pred             C
Q 023975          271 P  271 (274)
Q Consensus       271 ~  271 (274)
                      .
T Consensus       316 ~  316 (452)
T TIGR03452       316 A  316 (452)
T ss_pred             H
Confidence            3

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.6e-32  Score=240.03  Aligned_cols=252  Identities=23%  Similarity=0.264  Sum_probs=184.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee-----------------------ec---CCccccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA-----------------------MV---EPSFGKR   65 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~-----------------------~~---~~~~~~~   65 (274)
                      .|||+||||||+|+++|..|++ |.+|+|||++ .+|+.|.....                       .+   .+.....
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  176 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS  176 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence            5899999999999999999985 9999999997 67766532100                       00   0000000


Q ss_pred             eeee-------------ccccc---cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhHH-----
Q 023975           66 SVIN-------------HTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT-----  120 (274)
Q Consensus        66 ~~~~-------------~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~~-----  120 (274)
                      ....             ....+   .+++++.+.+...+.+  .+.+.++  .++.||++|+|||+.|..|+++.     
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~  256 (561)
T PRK13748        177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETP  256 (561)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCccc
Confidence            0000             00011   1467777777666665  3444455  36899999999999976554221     


Q ss_pred             --------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          121 --------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       121 --------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                                    +++..+++|.+|+|+|..+.  ..+.+|+++.+. .+++..++.+...+.+.+++.||++++++.+
T Consensus       257 ~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v  333 (561)
T PRK13748        257 YWTSTEALVSDTIPERLAVIGSSVVALELAQAFA--RLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQA  333 (561)
T ss_pred             eEccHHHhhcccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence                          12233455999999999998  578999999885 4566678889999999999999999999999


Q ss_pred             eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      ++++.+++.+.+.++++ ++.+|.|++|+|..|+..++.....++.++++|++.||++++| +.|+|||+|||++.+...
T Consensus       334 ~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~~  411 (561)
T PRK13748        334 SQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQFV  411 (561)
T ss_pred             EEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccch
Confidence            99986665566666555 6999999999999999887543334446778899999999999 899999999999887665


Q ss_pred             CCCC
Q 023975          267 SMIF  270 (274)
Q Consensus       267 ~~~~  270 (274)
                      +.+.
T Consensus       412 ~~A~  415 (561)
T PRK13748        412 YVAA  415 (561)
T ss_pred             hHHH
Confidence            5443

>PLN02546 glutathione reductase

Probab=100.00  E-value=9.6e-33  Score=237.50  Aligned_cols=255  Identities=18%  Similarity=0.214  Sum_probs=185.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCceeeccceee---------------------e-c--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWASLRA---------------------M-V--   58 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~---------~~~g~~~~~~~~---------------------~-~--   58 (274)
                      +|||+||||||+|+.+|..++ .|.+|+|+|+.         ..+|++.-....                     + +  
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~  158 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY  158 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence            589999999999999999997 59999999962         334433211100                     0 0  


Q ss_pred             --CCccccceeee------------ccccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH--
Q 023975           59 --EPSFGKRSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--  120 (274)
Q Consensus        59 --~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~--  120 (274)
                        ...++......            +...+  .+++++.+....++.+.+.. +|..+.||++|+|||+.|..|+++.  
T Consensus       159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~~  237 (558)
T PLN02546        159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGIE  237 (558)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCChh
Confidence              00000000000            01111  25788887777777776766 5778999999999999976654321  


Q ss_pred             ---------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975          121 ---------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       121 ---------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                                     +.+..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.
T Consensus       238 ~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~--~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~  315 (558)
T PLN02546        238 HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFN--GLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEES  315 (558)
T ss_pred             hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHH--hcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCE
Confidence                           11222345899999999998  5688999999999888888998999999999999999999999


Q ss_pred             eeeeccCC-CceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          186 VNLDSVSE-GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       186 v~~i~~~~-~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +.+++..+ +.+.+.+.+++...+|.||+++|..|+.+++.....++.++++|+|.||++++| +.|+|||+|||++.+.
T Consensus       316 v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~~  394 (558)
T PLN02546        316 PQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRIN  394 (558)
T ss_pred             EEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCcc
Confidence            99997543 334555555555568999999999999987533333446778899999999999 8999999999998776


Q ss_pred             CCCCCCC
Q 023975          265 SASMIFP  271 (274)
Q Consensus       265 ~~~~~~~  271 (274)
                      ..+.+..
T Consensus       395 l~~~A~~  401 (558)
T PLN02546        395 LTPVALM  401 (558)
T ss_pred             cHHHHHH
Confidence            6554443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=6.3e-33  Score=237.04  Aligned_cols=254  Identities=20%  Similarity=0.222  Sum_probs=179.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC--------------C---cc--ccceeeecc-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE--------------P---SF--GKRSVINHT-   71 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~--------------~---~~--~~~~~~~~~-   71 (274)
                      +|||+||||||+|++||..|+ .|.+|+|+|++ .+|+.+........              .   .+  .......+. 
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   82 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGA   82 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHH
Confidence            489999999999999999997 49999999986 34433221110000              0   00  000000000 


Q ss_pred             ----------------cc---ccccEEEEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCCCCC-ChhH-------H
Q 023975           72 ----------------DY---LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV-PKTR-------T  120 (274)
Q Consensus        72 ----------------~~---~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~~~~-~~~~-------~  120 (274)
                                      .+   ..+++.+.......+.+.+..  .++  .+++||++|+|||+.|.. |+.+       .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~  162 (466)
T PRK07818         83 AFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTY  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEch
Confidence                            00   013455555555555554333  344  468999999999998754 3211       0


Q ss_pred             ----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                                +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+...+.+.+++.||+++++++|++++
T Consensus       163 ~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~  240 (466)
T PRK07818        163 EEQILSRELPKSIVIAGAGAIGMEFAYVLK--NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESID  240 (466)
T ss_pred             HHHhccccCCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence                      11223445999999999998  568899999999998888888899999999999999999999999998


Q ss_pred             cCCCceeEECC--CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          191 VSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       191 ~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      .+++.+.+.+.  +|  +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...
T Consensus       241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~  319 (466)
T PRK07818        241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLA  319 (466)
T ss_pred             EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccH
Confidence            66555555443  56  37999999999999999886433333345677899999999999 899999999999876555


Q ss_pred             CCCC
Q 023975          267 SMIF  270 (274)
Q Consensus       267 ~~~~  270 (274)
                      +.+.
T Consensus       320 ~~A~  323 (466)
T PRK07818        320 HVAE  323 (466)
T ss_pred             hHHH
Confidence            4443

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=1.3e-32  Score=246.34  Aligned_cols=248  Identities=18%  Similarity=0.266  Sum_probs=189.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (274)
                      ++|+|||+|++|+.+|..|.     .+++|+||++++++.+....+...+.............+++  .+++++.. .+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~   83 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI   83 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence            58999999999999998885     25899999999988765544444333221112222222222  25666654 345


Q ss_pred             EEec--CeEEeCCCeEEecCEEEEccCCCCCCChhH------------HH---H----------HHHccCCchhhhHHHH
Q 023975           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TE---R----------LNQYQAGPTGVELAGE  138 (274)
Q Consensus        86 ~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------~~---~----------~~~~~~g~~~~e~a~~  138 (274)
                      .++.  +.|.+.++..+.||+||+|||+.|..|+++            ..   .          +..+++|.+|+|+|..
T Consensus        84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~  163 (847)
T PRK14989         84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGA  163 (847)
T ss_pred             EEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHH
Confidence            5554  467788888899999999999997655421            11   1          1223448999999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC--CceeEECCCCcEEeecEEEEcc
Q 023975          139 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCT  215 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~  215 (274)
                      |.  ..+.+++++.+.+.+++ .+++.....+.+.+++.||++++++.++++..++  ....+.+.+|+++++|.||+|+
T Consensus       164 L~--~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        164 LK--NLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HH--HcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence            98  56889999999988776 5788889999999999999999999999997543  2456778899999999999999


Q ss_pred             cCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          216 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       216 G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      |..|+.+++...++  .++++|+|.||++++| +.|+|||+|||+..+...
T Consensus       242 G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~  289 (847)
T PRK14989        242 GIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRV  289 (847)
T ss_pred             CcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcc
Confidence            99999988776666  5678899999999999 899999999999876543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=1.2e-32  Score=234.81  Aligned_cols=254  Identities=24%  Similarity=0.231  Sum_probs=186.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----c-----------------CC------ccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----V-----------------EP------SFG   63 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----~-----------------~~------~~~   63 (274)
                      ++||+|||||++|+.+|..++ +|.+|+|+|+.. +|+.+......     +                 ..      ...
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   79 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD   79 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence            469999999999999999997 599999999875 45433111100     0                 00      000


Q ss_pred             cceee------------eccccc--cccEEEEEeeEE----EecC--eEEeCCCe--EEecCEEEEccCCCCCCChh---
Q 023975           64 KRSVI------------NHTDYL--VNGRIVASPAIN----ITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKT---  118 (274)
Q Consensus        64 ~~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~---  118 (274)
                      .....            ...+.+  .+++++...+..    .+.+  .+.+.+|.  ++.||++|+|||+.|..|+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  159 (466)
T PRK07845         80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP  159 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence            00000            000111  256777777665    4444  34445564  78999999999999864331   


Q ss_pred             H------H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975          119 R------T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  182 (274)
Q Consensus       119 ~------~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  182 (274)
                      .      .          +++..+++|.+++|+|..+.  ..+.+|+++.+.+.+++..++.+...+.+.+++.||++++
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~  237 (466)
T PRK07845        160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYT--ELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLK  237 (466)
T ss_pred             CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEc
Confidence            0      1          12233455999999999988  6789999999999988888888999999999999999999


Q ss_pred             CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      ++++.+++.+++.+.+.+.+|+++++|.|++++|..|+.+.+.....++.++++|++.||++++| +.|+|||+|||++.
T Consensus       238 ~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~  316 (466)
T PRK07845        238 RSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV  316 (466)
T ss_pred             CCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC
Confidence            99999997666666777778889999999999999999886533334446778899999999999 89999999999987


Q ss_pred             CCCCCCCC
Q 023975          263 RVSASMIF  270 (274)
Q Consensus       263 ~~~~~~~~  270 (274)
                      +.+.+.+.
T Consensus       317 ~~l~~~A~  324 (466)
T PRK07845        317 LPLASVAA  324 (466)
T ss_pred             ccchhHHH
Confidence            66554443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.9e-32  Score=234.36  Aligned_cols=251  Identities=22%  Similarity=0.294  Sum_probs=184.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC------------------Cccc-cceeeeccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE------------------PSFG-KRSVINHTD   72 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~------------------~~~~-~~~~~~~~~   72 (274)
                      .|||+||||||+|+++|+.|++ |++|+|+|+ +.+|+.+........                  .... ......+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   79 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK   79 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence            3899999999999999999984 999999999 677765432211000                  0000 000000000


Q ss_pred             ------------------c--ccccEEEEEeeEEEecCeEE--eCCC-eEEecCEEEEccCCCCCCChhH----------
Q 023975           73 ------------------Y--LVNGRIVASPAINITENEVL--TAEG-RRVVYDYLVIATGHKDPVPKTR----------  119 (274)
Q Consensus        73 ------------------~--~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~li~a~G~~~~~~~~~----------  119 (274)
                                        +  ..+++++.+.....+.+.+.  ..++ .++.||++|+|||+.|..|+.+          
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~  159 (461)
T TIGR01350        80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT  159 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence                              0  11356666666666655333  3333 4799999999999997654431          


Q ss_pred             ----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 ----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                                .+++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+...+.+.+++.|++++.++.+.++
T Consensus       160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i  237 (461)
T TIGR01350       160 STGALNLKEVPESLVIIGGGVIGIEFASIFA--SLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV  237 (461)
T ss_pred             chHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence                      122333456999999999998  56889999999999888888889999999999999999999999999


Q ss_pred             ccCCCceeEECCCC--cEEeecEEEEcccCCCCch--hhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          190 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       190 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +.+++.+.+.+.+|  +++.+|.+|+|+|..|+.+  ++...++  .++.+|++.||++++| +.|+||++|||++.+..
T Consensus       238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~  314 (461)
T TIGR01350       238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGV--ELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML  314 (461)
T ss_pred             EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCc--eECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence            87666666776667  4799999999999999987  3444444  6778899999999998 89999999999986654


Q ss_pred             CCCC
Q 023975          266 ASMI  269 (274)
Q Consensus       266 ~~~~  269 (274)
                      ...+
T Consensus       315 ~~~A  318 (461)
T TIGR01350       315 AHVA  318 (461)
T ss_pred             HHHH
Confidence            4433

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.3e-32  Score=232.72  Aligned_cols=254  Identities=25%  Similarity=0.345  Sum_probs=184.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee------------------e----cC---Cccccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------M----VE---PSFGKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~------------------~----~~---~~~~~~~   66 (274)
                      +|||+||||||+|+++|..|+ .|.+|+|+|+ +.+|+.+.....                  .    +.   .......
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~   81 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK   81 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence            489999999999999999997 4999999999 566665432100                  0    00   0000000


Q ss_pred             eeec-------------c--ccccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCC-CCCChhH---------H-
Q 023975           67 VINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---------T-  120 (274)
Q Consensus        67 ~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~-~~~~~~~---------~-  120 (274)
                      ...+             .  ....+++++......++.+.+.. ++.++.||++|+|||+. |.+|+..         . 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~  160 (460)
T PRK06292         82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD  160 (460)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence            0000             0  01124566666555556665655 66789999999999998 7777641         1 


Q ss_pred             ---------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          121 ---------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       121 ---------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                               +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+...+.+.+++. +++++++.+.+++.
T Consensus       161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~  237 (460)
T PRK06292        161 DAFELDKLPKSLAVIGGGVIGLELGQALS--RLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK  237 (460)
T ss_pred             HHhCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence                     11223455999999999988  5689999999999988888888999999999999 99999999999976


Q ss_pred             CCC-ceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          192 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       192 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      +++ .+.+++.++  +++++|.|++|+|..|+.+++.....++.++++|++.||++++| +.|+|||+|||++.+...+.
T Consensus       238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~~  316 (460)
T PRK06292        238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLHE  316 (460)
T ss_pred             cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchhH
Confidence            544 344433333  47999999999999999886543334446778899999999999 89999999999987766555


Q ss_pred             CCCC
Q 023975          269 IFPQ  272 (274)
Q Consensus       269 ~~~~  272 (274)
                      +..|
T Consensus       317 A~~q  320 (460)
T PRK06292        317 AADE  320 (460)
T ss_pred             HHHH
Confidence            4433

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.3e-32  Score=233.16  Aligned_cols=255  Identities=19%  Similarity=0.215  Sum_probs=179.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee--------------cCC----cc--ccceeeecc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM--------------VEP----SF--GKRSVINHT   71 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~--------------~~~----~~--~~~~~~~~~   71 (274)
                      +|||+||||||+|++||..++ +|++|+|+|+...+|+........              ...    .+  .......+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~   82 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA   82 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence            489999999999999999997 599999999877777653211000              000    00  000000000


Q ss_pred             ------------------ccc--cccEEEEEeeEEEecCeE--EeCCC--eEEecCEEEEccCCCCC-CChhH-------
Q 023975           72 ------------------DYL--VNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDP-VPKTR-------  119 (274)
Q Consensus        72 ------------------~~~--~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~li~a~G~~~~-~~~~~-------  119 (274)
                                        ..+  .+++++.......+.+.+  ...++  ..+.||++|+|||+.|. +|+..       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~  162 (466)
T PRK06115         83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII  162 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence                              001  135666665433344433  33455  36899999999999864 33321       


Q ss_pred             -H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          120 -T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       120 -~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                       .          +++..+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+...+.+.+++.||++++++.+++
T Consensus       163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~--~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~  240 (466)
T PRK06115        163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWR--RLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG  240 (466)
T ss_pred             CHHHHhCCccCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence             1          11222345999999999888  6789999999999988888888999999999999999999999999


Q ss_pred             eccCCCceeEECC---C--CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          189 DSVSEGSDTYLTS---T--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       189 i~~~~~~~~v~~~---~--g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ++.+++.+.+.+.   +  ++++++|.|++++|..|+.+.+.....++.++.+| +.+|++++| +.|+|||+|||++.|
T Consensus       241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~  318 (466)
T PRK06115        241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP  318 (466)
T ss_pred             EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence            9865555544432   2  35799999999999999988654433344555565 778999998 899999999999877


Q ss_pred             CCCCCCCC
Q 023975          264 VSASMIFP  271 (274)
Q Consensus       264 ~~~~~~~~  271 (274)
                      ..++.+..
T Consensus       319 ~la~~A~~  326 (466)
T PRK06115        319 MLAHKAED  326 (466)
T ss_pred             ccHHHHHH
Confidence            66555443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=1.1e-31  Score=225.04  Aligned_cols=245  Identities=19%  Similarity=0.251  Sum_probs=178.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceee-ecCCccccceeeeccccc--cccEEEEE-eeE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (274)
                      .++|+|||||+||++||..|++ |  .+|+|+++++...+....+.. ++.............+++  .++++... .+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            3689999999999999999974 4  489999998876543222221 211111111111112222  25666544 344


Q ss_pred             EEe--cCeEEeCCCeEEecCEEEEccCCCCCCChh---------------HHH----------HHHHccCCchhhhHHHH
Q 023975           86 NIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT---------------RTE----------RLNQYQAGPTGVELAGE  138 (274)
Q Consensus        86 ~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~---------------~~~----------~~~~~~~g~~~~e~a~~  138 (274)
                      .++  .+.+.++++..+.||+||+|||+.|..++.               +..          ++..+++|.+++|+|..
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~  162 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS  162 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence            454  347778888899999999999998643321               111          12223458999999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          139 IAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +.  ..+.+++++.+.+.+++. .++.+.+.+.+.+++.||++++++.+++++. ++...+.+.+|+++.||.||+++|.
T Consensus       163 l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~  239 (396)
T PRK09754        163 AT--QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI  239 (396)
T ss_pred             HH--HcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence            98  568899999998887763 5667778888899999999999999999975 4456677888999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .|+..++...++  ..  ++++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~  282 (396)
T PRK09754        240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLD  282 (396)
T ss_pred             ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence            999888766655  22  467999999999 89999999999976654

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=5.7e-32  Score=232.61  Aligned_cols=248  Identities=21%  Similarity=0.290  Sum_probs=180.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee----------------------cC--Cccccc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM----------------------VE--PSFGKR   65 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~----------------------~~--~~~~~~   65 (274)
                      ...|||+|||||++|++||..+++ |.+|+|||++ .+|++.......                      +.  ......
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            356899999999999999999985 9999999986 455442110000                      00  000000


Q ss_pred             eeeec------------cccc--cccEEEEEeeEEEecCeEE----------------------------eCCCeEEecC
Q 023975           66 SVINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYD  103 (274)
Q Consensus        66 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~~~~~~~~  103 (274)
                      ....+            ...+  .+++++.+.....+++.|.                            .+++.+++||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad  204 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK  204 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence            00000            0111  2467777766555544332                            2456789999


Q ss_pred             EEEEccCCCCCCChhHH-------HH---------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHH
Q 023975          104 YLVIATGHKDPVPKTRT-------ER---------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD  167 (274)
Q Consensus       104 ~li~a~G~~~~~~~~~~-------~~---------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~  167 (274)
                      ++|+|||+.|..|+.+.       ..         +..+++|.+|+|+|..+.  ..+.+++++.+.+.+++.+++.+.+
T Consensus       205 ~lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~--~~G~~Vtli~~~~~il~~~d~~i~~  282 (561)
T PTZ00058        205 NILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVN--RLGAESYIFARGNRLLRKFDETIIN  282 (561)
T ss_pred             EEEEecCCCCCCCCCCCceeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHH--HcCCcEEEEEecccccccCCHHHHH
Confidence            99999999977665321       12         223445999999999998  6789999999999888888999999


Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCC-CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCc
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTST-GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  245 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  245 (274)
                      .+.+.+++.||++++++.+.+++.+++ .+.+.+.+ ++++++|.|++|+|..|+.+.+...++... .++|+|.||+++
T Consensus       283 ~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~l  361 (561)
T PTZ00058        283 ELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQ  361 (561)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCC
Confidence            999999999999999999999986543 34444434 457999999999999999988866555433 467899999999


Q ss_pred             cccCCCCeEEeccccCCC
Q 023975          246 RVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       246 ~~~~~~~i~~~Gd~~~~~  263 (274)
                      +| +.|+|||+|||++.+
T Consensus       362 qT-s~p~IYA~GDv~~~~  378 (561)
T PTZ00058        362 RT-SVKHIYAVGDCCMVK  378 (561)
T ss_pred             cc-CCCCEEEeEeccCcc
Confidence            98 899999999999843

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=6.5e-32  Score=231.01  Aligned_cols=253  Identities=20%  Similarity=0.239  Sum_probs=182.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcC------CCCceeeccceeeec--------------C---Cc--cc-c
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDP------KEYFEITWASLRAMV--------------E---PS--FG-K   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~------~~~~g~~~~~~~~~~--------------~---~~--~~-~   64 (274)
                      ..||++||||||+|++||..+++ |.+|+|+|+      ...+|+.+.......              .   ..  .. .
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~   82 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD   82 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence            35899999999999999999985 999999998      244554432211100              0   00  00 0


Q ss_pred             ceeeec------------------ccc--ccccEEEEEeeEEEe----cCeEEeC--CCeEEecCEEEEccCCCCCC-Ch
Q 023975           65 RSVINH------------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK  117 (274)
Q Consensus        65 ~~~~~~------------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~~~~~~~~~li~a~G~~~~~-~~  117 (274)
                      .....+                  ...  ..+++++......++    ...+...  ++.+++||++|+|||+.|.. |.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~  162 (475)
T PRK06327         83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG  162 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence            000000                  000  124677777766655    3455543  34589999999999998743 32


Q ss_pred             hH------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcE
Q 023975          118 TR------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  179 (274)
Q Consensus       118 ~~------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  179 (274)
                      ..                  .+.+..+++|.+++|+|..+.  ..+.+|+++.+.+.+++..++.+...+.+.+++.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWR--RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD  240 (475)
T ss_pred             CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence            11                  012223444999999999888  5689999999999888888888899999999999999


Q ss_pred             EEcCceeeeeccCCCceeEECCC--C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEE
Q 023975          180 VKLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA  255 (274)
Q Consensus       180 i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~  255 (274)
                      +++++.|++++.+++.+.+.+.+  |  +++++|.|++++|..|+.+++....+++.++++|++.||++++| +.|+||+
T Consensus       241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA  319 (475)
T PRK06327        241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA  319 (475)
T ss_pred             EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence            99999999998766666666544  3  47999999999999999886544444446778899999999998 8999999


Q ss_pred             eccccCCCCCCC
Q 023975          256 IGDITDIRVSAS  267 (274)
Q Consensus       256 ~Gd~~~~~~~~~  267 (274)
                      +|||++.+...+
T Consensus       320 ~GD~~~~~~~~~  331 (475)
T PRK06327        320 IGDVVRGPMLAH  331 (475)
T ss_pred             EEeccCCcchHH
Confidence            999998665443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.98  E-value=1.1e-31  Score=229.71  Aligned_cols=250  Identities=20%  Similarity=0.234  Sum_probs=178.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-------------------------Cccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-------------------------PSFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-------------------------~~~~~~   65 (274)
                      ..|||+||||||+|++||..|+ .|++|+|+|+. .+|+.+........                         ......
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA   81 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence            4699999999999999999998 49999999996 56655422110000                         000000


Q ss_pred             eeee------------cccc--ccccEEEEEeeEEEecC---------eEEeCCC--eEEecCEEEEccCCCCCC-ChhH
Q 023975           66 SVIN------------HTDY--LVNGRIVASPAINITEN---------EVLTAEG--RRVVYDYLVIATGHKDPV-PKTR  119 (274)
Q Consensus        66 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~---------~v~~~~~--~~~~~~~li~a~G~~~~~-~~~~  119 (274)
                      ....            ....  ..+++++.+....++.+         .+.+.+|  .++.||++|+|||+.|.. |...
T Consensus        82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~  161 (472)
T PRK05976         82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP  161 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence            0000            0011  12567888877766654         3444555  579999999999999753 3211


Q ss_pred             --------H----------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975          120 --------T----------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  181 (274)
Q Consensus       120 --------~----------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  181 (274)
                              .          +++..+++|..++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~--~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~  239 (472)
T PRK05976        162 FDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLA--DFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVV  239 (472)
T ss_pred             CCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEE
Confidence                    0          12223445999999999998  568999999999998888888899999999999999999


Q ss_pred             cCceeeeecc--CCCceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEec
Q 023975          182 LGERVNLDSV--SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG  257 (274)
Q Consensus       182 ~~~~v~~i~~--~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~G  257 (274)
                      .++.+.+++.  +++...+.+.+|  +++++|.||+|+|..|+.+.+.....++.. .+|++.||+++++ +.++||++|
T Consensus       240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiG  317 (472)
T PRK05976        240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIG  317 (472)
T ss_pred             eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEee
Confidence            9999999974  333333344566  369999999999999998765433333333 4688999999998 799999999


Q ss_pred             cccCCCCCC
Q 023975          258 DITDIRVSA  266 (274)
Q Consensus       258 d~~~~~~~~  266 (274)
                      ||++.+...
T Consensus       318 D~~~~~~~~  326 (472)
T PRK05976        318 DVIGEPQLA  326 (472)
T ss_pred             ecCCCcccH
Confidence            999765443

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.98  E-value=5.6e-31  Score=219.56  Aligned_cols=244  Identities=23%  Similarity=0.308  Sum_probs=178.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceee--ecccccc--ccEEEE-Eee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI--NHTDYLV--NGRIVA-SPA   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~-~~~   84 (274)
                      +++|+|||||+||+++|..|++   ..+|+|+++++...+....+...+..........  ...+++.  +++++. ..+
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V   81 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWV   81 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence            3699999999999999999963   6799999988764432222222222111111111  1112221  455543 344


Q ss_pred             EEEec--CeEEeCCCeEEecCEEEEccCCCCCCChhHH----------H-------------HHHHccCCchhhhHHHHh
Q 023975           85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------E-------------RLNQYQAGPTGVELAGEI  139 (274)
Q Consensus        85 ~~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------~-------------~~~~~~~g~~~~e~a~~l  139 (274)
                      ..++.  +.+.+ ++..+.||+||+|||+.|..|+++.          .             ++..+++|.+++|+|..+
T Consensus        82 ~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L  160 (377)
T PRK04965         82 TDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDL  160 (377)
T ss_pred             EEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            45543  35555 5678999999999999876554221          1             112234589999999999


Q ss_pred             hhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          140 AVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      .  ..+.+++++.+.+.+++. .++.+...+.+.+++.|++++.++++.+++.+++...+.+.+|++++||.||+|+|..
T Consensus       161 ~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~  238 (377)
T PRK04965        161 C--RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR  238 (377)
T ss_pred             H--hcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence            8  568899999998887764 4667788889999999999999999999987766677888899999999999999999


Q ss_pred             CCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          219 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      |+.+++...++.  . .+ ++.||++++| +.|+|||+|||+..+.
T Consensus       239 p~~~l~~~~gl~--~-~~-gi~vd~~l~t-s~~~VyA~GD~a~~~~  279 (377)
T PRK04965        239 PNTALARRAGLA--V-NR-GIVVDSYLQT-SAPDIYALGDCAEING  279 (377)
T ss_pred             cchHHHHHCCCC--c-CC-CEEECCCccc-CCCCEEEeeecEeECC
Confidence            998888776663  3 23 4999999999 8999999999997654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.98  E-value=6.2e-31  Score=224.13  Aligned_cols=244  Identities=21%  Similarity=0.294  Sum_probs=175.9

Q ss_pred             cEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCcccc--ceeeeccccc--cccEEE-EEeeEE
Q 023975           15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRIV-ASPAIN   86 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~-~~~~~~   86 (274)
                      +|+|||||++|+++|..|++   +.+|+|||+++.+++....+.......+..  .......+.+  .++++. ...+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~   81 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK   81 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence            79999999999999999973   569999999998765443333332221111  1111111111  245554 334555


Q ss_pred             Ee--cCeEEeCC---CeEEe--cCEEEEccCCCCCCChhH---------------HHH------------HHHccCCchh
Q 023975           87 IT--ENEVLTAE---GRRVV--YDYLVIATGHKDPVPKTR---------------TER------------LNQYQAGPTG  132 (274)
Q Consensus        87 ~~--~~~v~~~~---~~~~~--~~~li~a~G~~~~~~~~~---------------~~~------------~~~~~~g~~~  132 (274)
                      ++  .+.+.+.+   +..+.  ||++|+|||+.|..|..+               ...            +..+++|.++
T Consensus        82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g  161 (444)
T PRK09564         82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG  161 (444)
T ss_pred             EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence            54  34555533   55566  999999999986544311               011            1223448899


Q ss_pred             hhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEE
Q 023975          133 VELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCH  211 (274)
Q Consensus       133 ~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~v  211 (274)
                      +|+|..+.  ..+.+++++.+.+.+++ .+++.+.+.+.+.+++.|+++++++++.++..+++...+.++ +.++.+|.+
T Consensus       162 ~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~v  238 (444)
T PRK09564        162 LEAVEAAK--HLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADVV  238 (444)
T ss_pred             HHHHHHHH--hcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCEE
Confidence            99999987  56889999998887776 577889999999999999999999999999654433344554 447999999


Q ss_pred             EEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          212 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       212 v~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      |+|+|..|+.++++..++  .++++|++.||++++| +.|+|||+|||++.+.
T Consensus       239 i~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  288 (444)
T PRK09564        239 IVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN  288 (444)
T ss_pred             EECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence            999999999999887766  4567899999999998 8999999999998643

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.98  E-value=3.1e-31  Score=227.32  Aligned_cols=251  Identities=20%  Similarity=0.197  Sum_probs=177.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Cceeeccceeeec---------------------C---
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWASLRAMV---------------------E---   59 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~--------~~g~~~~~~~~~~---------------------~---   59 (274)
                      +|||+||||||+|++||..|+ .|.+|+|+|+..        .+|+.........                     .   
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            589999999999999999997 599999999632        3565421110000                     0   


Q ss_pred             -Cccccceeeec------------cccc--cccEEEEEeeEEEecCeEEeCC---CeEEecCEEEEccCCCCCCCh-hH-
Q 023975           60 -PSFGKRSVINH------------TDYL--VNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TR-  119 (274)
Q Consensus        60 -~~~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~li~a~G~~~~~~~-~~-  119 (274)
                       .......+..+            ....  .+++++.......+.+.+...+   +..++||++|+|||+.|..|. ++ 
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G  164 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG  164 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence             00000000000            0001  2455566665555555555432   357999999999999976542 11 


Q ss_pred             -------HH----------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEc
Q 023975          120 -------TE----------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL  182 (274)
Q Consensus       120 -------~~----------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  182 (274)
                             ..          ++..+++|.+++|+|..+.  ..+.+|+++.+. .+++.+++.+.+.+.+.+++.||+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~~  241 (499)
T PTZ00052        165 AKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLN--ELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFLE  241 (499)
T ss_pred             ccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEEc
Confidence                   11          1223455999999999998  578999999874 566778888999999999999999999


Q ss_pred             CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC-
Q 023975          183 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD-  261 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~-  261 (274)
                      ++.+.+++..++...+.+.+|+++.+|.|++++|..|+.+++....+++.++++|++.+++. +| +.|+|||+|||+. 
T Consensus       242 ~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~~  319 (499)
T PTZ00052        242 GVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVEG  319 (499)
T ss_pred             CCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecCC
Confidence            99998887655556677778888999999999999999988754444456778888777766 87 8999999999985 


Q ss_pred             CCCCCCC
Q 023975          262 IRVSASM  268 (274)
Q Consensus       262 ~~~~~~~  268 (274)
                      .+...+.
T Consensus       320 ~~~l~~~  326 (499)
T PTZ00052        320 RPELTPV  326 (499)
T ss_pred             CcccHHH
Confidence            4444433

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.97  E-value=4.7e-31  Score=225.20  Aligned_cols=253  Identities=19%  Similarity=0.162  Sum_probs=181.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC--------Cceeeccceee--------------ecC--Ccc--c-c
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLRA--------------MVE--PSF--G-K   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~g~~~~~~~~--------------~~~--~~~--~-~   64 (274)
                      .||++||||||+|+.+|..+++ |.+|+++|+..        .+|+.+.....              ...  ..+  . .
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            4899999999999999999984 99999999731        35544321000              000  000  0 0


Q ss_pred             c-eeee------------------ccccc--cccEEEEEeeEEEecCeEEeC--CC--eEEecCEEEEccCCCCCCChhH
Q 023975           65 R-SVIN------------------HTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR  119 (274)
Q Consensus        65 ~-~~~~------------------~~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~li~a~G~~~~~~~~~  119 (274)
                      . ....                  ....+  .+++++......++++.+...  ++  ..+.||++|+|||+.|..|+++
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            0 0000                  00011  256788888877777755442  33  4799999999999997765532


Q ss_pred             H--------H----------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975          120 T--------E----------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  181 (274)
Q Consensus       120 ~--------~----------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  181 (274)
                      .        .          ++..+++|.+|+|+|..+.  ..+.+|+++.+ +.+++.+++.+.+.+.+.+++.||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~  238 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK  238 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHH--HhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence            1        1          1222345999999999998  56889999987 467788899999999999999999999


Q ss_pred             cCceeeeeccCCCceeEECCCC---cEEeecEEEEcccCCCCchhhcccccccccCC-CCcEEeCCCccccCCCCeEEec
Q 023975          182 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG  257 (274)
Q Consensus       182 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~i~~~G  257 (274)
                      +++.+.+++..++...+++.++   +++++|.|++|+|..|+.+++.....++.++. +|+|.||++++| +.|+|||+|
T Consensus       239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G  317 (484)
T TIGR01438       239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG  317 (484)
T ss_pred             eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence            9999988876555556666555   37999999999999999987654444445654 488999999998 899999999


Q ss_pred             cccC-CCCCCCCC
Q 023975          258 DITD-IRVSASMI  269 (274)
Q Consensus       258 d~~~-~~~~~~~~  269 (274)
                      ||+. .+...+.+
T Consensus       318 Dv~~~~~~l~~~A  330 (484)
T TIGR01438       318 DILEDKQELTPVA  330 (484)
T ss_pred             EecCCCccchHHH
Confidence            9996 44444333

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.97  E-value=4.6e-31  Score=236.63  Aligned_cols=243  Identities=18%  Similarity=0.269  Sum_probs=185.0

Q ss_pred             EEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEE-eeEEE
Q 023975           16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVAS-PAINI   87 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~   87 (274)
                      |+|||+|+||+++|..|+    .+++|+|||+++.+++....+...+..... ........+++  .+++++.. .+..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            689999999999998875    368999999999876554444433322211 11222223333  25666543 44455


Q ss_pred             e--cCeEEeCCCeEEecCEEEEccCCCCCCChhH---------------HHH----------HHHccCCchhhhHHHHhh
Q 023975           88 T--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TER----------LNQYQAGPTGVELAGEIA  140 (274)
Q Consensus        88 ~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------~~~----------~~~~~~g~~~~e~a~~l~  140 (274)
                      +  .+.+.+.++.++.||+||+|||+.|..|+++               ...          +..+++|.+|+|+|..|.
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~  160 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ  160 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence            4  3478888888999999999999987655421               111          122445899999999998


Q ss_pred             hhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          141 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                        ..+.+++++.+.+.+++ .+++.....+.+.+++.||++++++.++++..++....+.+.+|+++++|.||+++|..|
T Consensus       161 --~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       161 --NLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             --hcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence              56889999999888765 467788888999999999999999999999766555678889999999999999999999


Q ss_pred             CchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          220 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +.++....++.  .  +|++.||++++| +.|+|||+|||+..+..
T Consensus       239 n~~la~~~gl~--~--~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~  279 (785)
T TIGR02374       239 NDELAVSAGIK--V--NRGIIVNDSMQT-SDPDIYAVGECAEHNGR  279 (785)
T ss_pred             CcHHHHhcCCc--c--CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence            99988776663  3  377999999999 89999999999987654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=2e-30  Score=221.09  Aligned_cols=249  Identities=20%  Similarity=0.207  Sum_probs=175.7

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccce-----eee---------------cCC-------ccccce
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL-----RAM---------------VEP-------SFGKRS   66 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~-----~~~---------------~~~-------~~~~~~   66 (274)
                      +|+||||||+|+++|..++ .|.+|+|+||.. +|+.....     ..+               ..-       ......
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ   80 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence            8999999999999999997 499999999975 44321100     000               000       000000


Q ss_pred             eeec------------ccc--ccccEEEEEeeEEEecCeEE--eCCC-eEEecCEEEEccCCCCCCChhH----------
Q 023975           67 VINH------------TDY--LVNGRIVASPAINITENEVL--TAEG-RRVVYDYLVIATGHKDPVPKTR----------  119 (274)
Q Consensus        67 ~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~~~li~a~G~~~~~~~~~----------  119 (274)
                      ...+            ...  ..+++++.+....++.+.+.  .+++ .++.||++|+|||+.|..|+..          
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~  160 (458)
T PRK06912         81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINS  160 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcc
Confidence            0000            000  12567777777767766443  3344 4799999999999987543311          


Q ss_pred             ---------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 ---------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ---------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                               .+++..+++|.+|+|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||++++++.+++++
T Consensus       161 ~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~  238 (458)
T PRK06912        161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYS--RLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN  238 (458)
T ss_pred             hHHhCccccCCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence                     112333456999999999887  568899999999998888888899999999999999999999999997


Q ss_pred             cCCCceeEECCCC-cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          191 VSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       191 ~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      .++..+.+...++ +++++|.|++|+|..|+.+.+.....++.++++| +.||++++| +.|+|||+|||++.+...+.
T Consensus       239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la~~  315 (458)
T PRK06912        239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLAHV  315 (458)
T ss_pred             EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccHHH
Confidence            6554444443222 3699999999999999987654333333455555 999999998 89999999999986655543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.97  E-value=3.5e-30  Score=214.15  Aligned_cols=241  Identities=28%  Similarity=0.404  Sum_probs=175.3

Q ss_pred             cEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccccc--cccEEEEEeeEEE
Q 023975           15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      +|+|||||+||+.+|..|+    ++++|+|||+++...+.+. +......... .+......+++  .+++++...+..+
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence            5899999999999999984    3789999999987543322 1111111111 11222222222  2577877777777


Q ss_pred             ec--CeEEeCCCeEEecCEEEEccCCCCCCChhHH------------------HHHH-------------HccCCchhhh
Q 023975           88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT------------------ERLN-------------QYQAGPTGVE  134 (274)
Q Consensus        88 ~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~------------------~~~~-------------~~~~g~~~~e  134 (274)
                      +.  +.|.++++++++||+||+|||+.+..|..+.                  ..+.             .+++|..++|
T Consensus        80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E  159 (364)
T TIGR03169        80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE  159 (364)
T ss_pred             ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence            64  4788888888999999999999865443210                  0011             1233889999


Q ss_pred             HHHHhhhhCC----CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecE
Q 023975          135 LAGEIAVDFP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  210 (274)
Q Consensus       135 ~a~~l~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  210 (274)
                      +|..+.+.++    ..+++++ ..+.+++..++.+...+.+.+++.||+++.++.+.++..+    .+.+.+|+++++|.
T Consensus       160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~  234 (364)
T TIGR03169       160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA  234 (364)
T ss_pred             HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence            9998874321    2478888 5566666677778888999999999999999999988632    57778888999999


Q ss_pred             EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       211 vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +|+|+|..|+. ++...++  .++++|++.||+.+++.+.|+||++|||+..+.
T Consensus       235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~  285 (364)
T TIGR03169       235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD  285 (364)
T ss_pred             EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence            99999999864 5555554  467789999999999878999999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.97  E-value=1.7e-30  Score=226.25  Aligned_cols=257  Identities=20%  Similarity=0.254  Sum_probs=180.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-CCceeeccce------------------eee-------cC------
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-EYFEITWASL------------------RAM-------VE------   59 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~-~~~g~~~~~~------------------~~~-------~~------   59 (274)
                      +|||+|||+|++|..+|..++ .|.+|+|||+. ..+|++.-..                  ...       +.      
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~  195 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN  195 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence            689999999999999999997 59999999975 2455432110                  000       00      


Q ss_pred             -------------C--ccccceeeec------------cccc---------cccEEEEEeeEEEecCeEEe-CCCeEEec
Q 023975           60 -------------P--SFGKRSVINH------------TDYL---------VNGRIVASPAINITENEVLT-AEGRRVVY  102 (274)
Q Consensus        60 -------------~--~~~~~~~~~~------------~~~~---------~~~~~~~~~~~~~~~~~v~~-~~~~~~~~  102 (274)
                                   .  .+.......+            ...+         ..++++.......+++.+.. .++.++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~a  275 (659)
T PTZ00153        196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKV  275 (659)
T ss_pred             cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEEC
Confidence                         0  0000000000            0001         12466666666666665554 35678999


Q ss_pred             CEEEEccCCCCCCChhH------------H-------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCCh
Q 023975          103 DYLVIATGHKDPVPKTR------------T-------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP  163 (274)
Q Consensus       103 ~~li~a~G~~~~~~~~~------------~-------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~  163 (274)
                      |++|+|||+.|.+|+..            .       +.+..+++|++|+|+|..+.  ..+.+|+++.+.+.+++.+++
T Consensus       276 d~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~--~~G~eVTLIe~~~~ll~~~d~  353 (659)
T PTZ00153        276 KNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYT--ALGSEVVSFEYSPQLLPLLDA  353 (659)
T ss_pred             CEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHH--hCCCeEEEEeccCcccccCCH
Confidence            99999999998776511            0       12333455999999999888  568999999999999998888


Q ss_pred             hHHHHHHHHH-HhCCcEEEcCceeeeeccCCCc--eeEECCC-------C--------cEEeecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTST-------G--------DTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--------~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+.+.+.+.+ ++.||++++++.|.+++.+++.  +.+.+.+       +        +++++|.|++|+|..|+.+.+.
T Consensus       354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~  433 (659)
T PTZ00153        354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLG  433 (659)
T ss_pred             HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCC
Confidence            8888888875 6789999999999999865433  4443321       1        2799999999999999998764


Q ss_pred             ccccccccCCCCcEEeCCCccccC-----CCCeEEeccccCCCCCCCCCCCC
Q 023975          226 DTILKDSLDTHGMLMVDENLRVKG-----QKNIFAIGDITDIRVSASMIFPQ  272 (274)
Q Consensus       226 ~~~~~~~~~~~g~~~v~~~~~~~~-----~~~i~~~Gd~~~~~~~~~~~~~~  272 (274)
                      ....++.++ +|+|.||+++||..     +|+|||+|||++.+.+.+.+..|
T Consensus       434 l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~q  484 (659)
T PTZ00153        434 LDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQ  484 (659)
T ss_pred             chhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHH
Confidence            433333454 58999999999831     69999999999877666555433

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.97  E-value=1.7e-29  Score=205.03  Aligned_cols=246  Identities=22%  Similarity=0.273  Sum_probs=167.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec-CCcccc----cee-eeccccc--cccEEEEEee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFGK----RSV-INHTDYL--VNGRIVASPA   84 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~-~~~~~~----~~~-~~~~~~~--~~~~~~~~~~   84 (274)
                      +||+|||||++|+++|..|+ +|++|+|+|+++ .|+.+....... .+.+..    ... ....+..  .++++....+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v   79 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV   79 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence            68999999999999999997 599999999886 443322111000 011100    000 0011111  1345544555


Q ss_pred             EEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhHHHH
Q 023975           85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVELAGE  138 (274)
Q Consensus        85 ~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~a~~  138 (274)
                      ..++..    .+.+.++.++.||++|+|+|..|..|..+..                      ++..+++|.+++|++..
T Consensus        80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~  159 (300)
T TIGR01292        80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY  159 (300)
T ss_pred             EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence            555432    4566677789999999999998664432211                      11123448899999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECC---CC--cEEeecEEE
Q 023975          139 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS---TG--DTINADCHF  212 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~~~~d~vv  212 (274)
                      +.  ..+.+++++.+.+.+.      ....+.+.+++. |++++.++.+.+++.++....+.+.   ++  +++++|.+|
T Consensus       160 l~--~~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       160 LT--RIAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             HH--hhcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence            88  4578999999876542      234566677777 9999999999999865533334332   23  579999999


Q ss_pred             EcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC-CCCCCCCCCCC
Q 023975          213 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD-IRVSASMIFPQ  272 (274)
Q Consensus       213 ~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~-~~~~~~~~~~~  272 (274)
                      +|+|+.|+.+++... +  .++++|++.+|+++++ +.|+||++|||++ .+.....++.|
T Consensus       232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~~~~~~~~~A~~~  288 (300)
T TIGR01292       232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRDKGYRQAVTAAGD  288 (300)
T ss_pred             EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccCcchhhhhhhhhh
Confidence            999999998888765 3  4677899999999998 8999999999998 34444444443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.8e-29  Score=197.67  Aligned_cols=237  Identities=24%  Similarity=0.267  Sum_probs=166.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCc-EEEEcCCCCceeeccceeeecC--Ccccc-----ceeeecccc--ccccEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAMVE--PSFGK-----RSVINHTDY--LVNGRIV   80 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~g~~~~~~~~~~~--~~~~~-----~~~~~~~~~--~~~~~~~   80 (274)
                      +++||+|||||||||+||.++++ +.+ ++|+|+.. .|+...... ...  +.+..     .......+.  ..+.++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~-~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~   79 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTT-DVENYPGFPGGILGPELMEQMKEQAEKFGVEIV   79 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccce-eecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence            45899999999999999999985 888 66666543 332211111 111  00100     000001111  1234444


Q ss_pred             EEeeEEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhH---------------------HHHHHHccCCchhhhH
Q 023975           81 ASPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------------TERLNQYQAGPTGVEL  135 (274)
Q Consensus        81 ~~~~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------------~~~~~~~~~g~~~~e~  135 (274)
                      ...+..++..    .+.++++. +.++++|+|||..+..|+..                     .+.+..+++|.+++|.
T Consensus        80 ~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~  158 (305)
T COG0492          80 EDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEE  158 (305)
T ss_pred             EEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCccccCCeEEEEcCCHHHHHH
Confidence            4444444322    67777876 99999999999986655432                     1222334449999999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCC--C--cEEeecE
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST--G--DTINADC  210 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~  210 (274)
                      |..|.  ..+++|++++|.+.+..      .+.+.+.+++. ++++++++.+.++..++ ...+++.+  +  +.+.+|.
T Consensus       159 Al~L~--~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~g  229 (305)
T COG0492         159 ALYLS--KIAKKVTLVHRRDEFRA------EEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDG  229 (305)
T ss_pred             HHHHH--HhcCeEEEEecCcccCc------CHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEece
Confidence            99998  66788999999987653      35666667666 89999999999998766 33455444  2  3789999


Q ss_pred             EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       211 vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +++++|..|+..++...+.   ++++|++.+|+.++| |.|+|||+|||+..+.
T Consensus       230 vf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~  279 (305)
T COG0492         230 VFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNG  279 (305)
T ss_pred             EEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCcc
Confidence            9999999999998887665   788999999999999 8999999999998775

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.96  E-value=8.5e-29  Score=194.21  Aligned_cols=258  Identities=20%  Similarity=0.277  Sum_probs=198.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----c---------CC-ccccce---------
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----V---------EP-SFGKRS---------   66 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----~---------~~-~~~~~~---------   66 (274)
                      ..||++|||+||.|..||...+ .|.+.+++|++..+|++.-.....     +         .. .+..+-         
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d  117 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD  117 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence            3599999999999999998886 599999999999988664322110     0         00 100000         


Q ss_pred             ---eeec------------cccc--cccEEEEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCC-CCCChhH-----
Q 023975           67 ---VINH------------TDYL--VNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHK-DPVPKTR-----  119 (274)
Q Consensus        67 ---~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~-~~~~~~~-----  119 (274)
                         ....            ...+  .++.++.+.....+++.|..  .+|  ..+.++.+++|||+. +.+|++.     
T Consensus       118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk  197 (506)
T KOG1335|consen  118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence               0000            0011  13555666666667664443  333  478899999999995 6667632     


Q ss_pred             -------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          120 -------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       120 -------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                                   .+++..+++|.+|+|+...+.  +.|++|+++.-.+.+.+.++.+++..+++.|++.|+.+.+++.|
T Consensus       198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv  275 (506)
T KOG1335|consen  198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV  275 (506)
T ss_pred             EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence                         334455666999999999998  78999999999999999999999999999999999999999999


Q ss_pred             eeeccCCC-ceeEECCC---C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          187 NLDSVSEG-SDTYLTST---G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       187 ~~i~~~~~-~~~v~~~~---g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      ...+.+++ .+.++..+   +  ++++||.+.+++|.+|...-|..+.+++..|..|++.+|..++| .+|+||++||+.
T Consensus       276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~  354 (506)
T KOG1335|consen  276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT  354 (506)
T ss_pred             EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence            99988776 55555433   2  48999999999999998887777777778899999999999999 799999999999


Q ss_pred             CCCCCCCCCCCC
Q 023975          261 DIRVSASMIFPQ  272 (274)
Q Consensus       261 ~~~~~~~~~~~~  272 (274)
                      .-|.+++.+-.|
T Consensus       355 ~gpMLAhkAeee  366 (506)
T KOG1335|consen  355 LGPMLAHKAEEE  366 (506)
T ss_pred             Ccchhhhhhhhh
Confidence            999998776544

>PRK10262 thioredoxin reductase; Provisional

Probab=99.96  E-value=7.3e-28  Score=196.81  Aligned_cols=240  Identities=15%  Similarity=0.160  Sum_probs=159.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---cC--Cccccce----eeeccccccccEEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS----VINHTDYLVNGRIVA   81 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---~~--~~~~~~~----~~~~~~~~~~~~~~~   81 (274)
                      ..+||+||||||+||+||..|+ +|++++++|+. ..|+.+......   ..  .......    +......+ ..++..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEIIF   82 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEe
Confidence            4689999999999999999997 59999999965 344332211111   00  0000000    00011111 123333


Q ss_pred             EeeEEE--ecCe--EEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhH
Q 023975           82 SPAINI--TENE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVEL  135 (274)
Q Consensus        82 ~~~~~~--~~~~--v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~  135 (274)
                      ..+..+  ..+.  +..+. ..+.||++|+|||..|..|+.+..                      ++..+++|.+++|+
T Consensus        83 ~~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~  161 (321)
T PRK10262         83 DHINKVDLQNRPFRLTGDS-GEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEE  161 (321)
T ss_pred             eEEEEEEecCCeEEEEecC-CEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHH
Confidence            222223  2232  33333 368999999999998765543321                      11223348899999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC------CcEEee
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST------GDTINA  208 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~~~~  208 (274)
                      |..+.  ..+.+++++.+.+.+.  .++.+.+.+.+.+++.||++++++.++++..++... .+++.+      .+++++
T Consensus       162 A~~l~--~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~  237 (321)
T PRK10262        162 ALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV  237 (321)
T ss_pred             HHHHH--hhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEEC
Confidence            99998  5688999999877542  235567778888899999999999999998655332 344332      247999


Q ss_pred             cEEEEcccCCCCchhhcccccccccCCCCcEEeCC-----CccccCCCCeEEeccccCCC
Q 023975          209 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       209 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-----~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      |.||+++|..|+..++.. ++  .+ ++|++.+|+     .++| +.|+|||+|||++.+
T Consensus       238 D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~  292 (321)
T PRK10262        238 AGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI  292 (321)
T ss_pred             CEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCC
Confidence            999999999999887754 44  33 468899997     5777 899999999999754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.96  E-value=2.4e-28  Score=210.64  Aligned_cols=239  Identities=21%  Similarity=0.245  Sum_probs=163.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee---ecCCc-cccceee-eccccc--cccEEEE-E
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---MVEPS-FGKRSVI-NHTDYL--VNGRIVA-S   82 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~---~~~~~-~~~~~~~-~~~~~~--~~~~~~~-~   82 (274)
                      ..+||+||||||||++||.+|++ |++|+|+++  .+|+.+.....   +.... .....+. ...+..  .++++.. .
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~  288 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQ  288 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCC
Confidence            46899999999999999999985 999999975  35544321110   00000 0000000 000111  1344433 2


Q ss_pred             eeEEEec--C--eEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhHH
Q 023975           83 PAINITE--N--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVELA  136 (274)
Q Consensus        83 ~~~~~~~--~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~a  136 (274)
                      .+..++.  +  .+.++++..+.|+++++|+|..+..|+.+.                      +++..+++|.+|+|+|
T Consensus       289 ~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A  368 (515)
T TIGR03140       289 RAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAA  368 (515)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHH
Confidence            2333322  1  456667778999999999999865443221                      1223344589999999


Q ss_pred             HHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCC---C--cEEeec
Q 023975          137 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINAD  209 (274)
Q Consensus       137 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~d  209 (274)
                      ..+.  ..+.+++++.+.+.+.      ....+.+.+++ .||+++.++.+++++.+++.+ .+.+.+   +  +++++|
T Consensus       369 ~~L~--~~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D  440 (515)
T TIGR03140       369 IDLA--GIVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLD  440 (515)
T ss_pred             HHHH--hcCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcC
Confidence            9998  5688999998776542      23445666766 699999999999998665443 354432   2  479999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .|++++|..|+.+++... +  .++.+|++.||++++| +.|+|||+|||++.+.
T Consensus       441 ~vi~a~G~~Pn~~~l~~~-~--~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~  491 (515)
T TIGR03140       441 GVFVQIGLVPNTEWLKDA-V--ELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY  491 (515)
T ss_pred             EEEEEeCCcCCchHHhhh-c--ccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence            999999999999988754 3  5677899999999999 8999999999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.96  E-value=7.2e-28  Score=194.89  Aligned_cols=247  Identities=21%  Similarity=0.349  Sum_probs=187.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEE---EEee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV---ASPA   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~   84 (274)
                      ...++|||+|++|..|+..+++   -.+++++-+..++.+....+........ ........+|+.  +++++   ....
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~~  152 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVVK  152 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeEE
Confidence            4689999999999999999973   3477777766665554443333322111 111112223333  33443   3344


Q ss_pred             EEEecCeEEeCCCeEEecCEEEEccCCC---CCCChhHHHHHH----------------------HccCCchhhhHHHHh
Q 023975           85 INITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLN----------------------QYQAGPTGVELAGEI  139 (274)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~li~a~G~~---~~~~~~~~~~~~----------------------~~~~g~~~~e~a~~l  139 (274)
                      +++..+.+.+.+|+.+.|+++++|||+.   +.+|+...+.+.                      ..++|+.++|++..+
T Consensus       153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l  232 (478)
T KOG1336|consen  153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL  232 (478)
T ss_pred             eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence            5566779999999999999999999995   444543211111                      122388999999999


Q ss_pred             hhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEccc
Q 023975          140 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG  216 (274)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G  216 (274)
                      .  ..+.+++++.+.+.+++ .+.+.+.+.+.+.++++||+++.++.+.+++...+  ...|.+.+|++++||.||+.+|
T Consensus       233 ~--~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG  310 (478)
T KOG1336|consen  233 V--SKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG  310 (478)
T ss_pred             H--hcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec
Confidence            8  56889999999999887 56778899999999999999999999999987663  4568899999999999999999


Q ss_pred             CCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          217 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      .+|+..+++. +.  .+++.|++.||+++|+ +.|+|||+||++..|...
T Consensus       311 ~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~  356 (478)
T KOG1336|consen  311 IKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG  356 (478)
T ss_pred             cccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence            9999999986 33  5789999999999999 799999999999887653

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=1.4e-28  Score=190.72  Aligned_cols=257  Identities=21%  Similarity=0.254  Sum_probs=195.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee--------------eecC------------Cccc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------------AMVE------------PSFG   63 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~--------------~~~~------------~~~~   63 (274)
                      ...+|.+|||||..|+++|+..+ .|.++.|+|..-.+|++.-...              ..+.            ..+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd   97 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD   97 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence            34799999999999999999987 4999999998756654432110              0000            0011


Q ss_pred             cceeeec------------cccc--cccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCChhHH-----
Q 023975           64 KRSVINH------------TDYL--VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRT-----  120 (274)
Q Consensus        64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~~~-----  120 (274)
                      +..+...            ++.+  ..+.++.+....+.+.  .|...++.  .++++++++|+|.+|.+|.++.     
T Consensus        98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi  177 (478)
T KOG0405|consen   98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI  177 (478)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence            1111000            0011  1345566666555555  55555664  3778999999999976665332     


Q ss_pred             ------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          121 ------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       121 ------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                                  ++...+++|++++|+|..+.  ..+.+++++.|.+.+++.+++.+.+.+.+.++..|++++.++.+++
T Consensus       178 dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~  255 (478)
T KOG0405|consen  178 DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTK  255 (478)
T ss_pred             ccccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeeccccccee
Confidence                        22233445999999999998  7899999999999999999999999999999999999999999999


Q ss_pred             eccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          189 DSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       189 i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      +....++ ..+..+.|....+|.+++|+|..|+..-+..+..+..++++|.|.+|++.+| |+|+||++||+++.-.+.+
T Consensus       256 v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTP  334 (478)
T KOG0405|consen  256 VIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTP  334 (478)
T ss_pred             eeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecch
Confidence            9876655 5566677766679999999999999988888888889999999999999999 9999999999999877776


Q ss_pred             CCC
Q 023975          268 MIF  270 (274)
Q Consensus       268 ~~~  270 (274)
                      +++
T Consensus       335 VAi  337 (478)
T KOG0405|consen  335 VAI  337 (478)
T ss_pred             HHH
Confidence            554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.95  E-value=9.1e-27  Score=202.31  Aligned_cols=237  Identities=18%  Similarity=0.236  Sum_probs=155.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-Ccc---ccceeee-ccccc--cccEEEEEe
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSF---GKRSVIN-HTDYL--VNGRIVASP   83 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-~~~---~~~~~~~-~~~~~--~~~~~~~~~   83 (274)
                      ..|||+|||||||||+||..|+ +|++|+|+|+.. +|+.......... +..   ....+.. .....  .++++....
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~   81 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE   81 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence            4599999999999999999997 499999999964 5543221111000 000   0000000 00011  134555444


Q ss_pred             eEEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhHHH----------------------HHHHccCCchhhhHHH
Q 023975           84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE----------------------RLNQYQAGPTGVELAG  137 (274)
Q Consensus        84 ~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~----------------------~~~~~~~g~~~~e~a~  137 (274)
                      +..++..    .+.+.++ .+.++++|+|||+.|..|+++..                      ++..+++|.+|+|+|.
T Consensus        82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~  160 (555)
T TIGR03143        82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAV  160 (555)
T ss_pred             EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHH
Confidence            4444421    3455455 68899999999999765543321                      1122345999999999


Q ss_pred             HhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---CCCCcEE----eecE
Q 023975          138 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTI----NADC  210 (274)
Q Consensus       138 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~~----~~d~  210 (274)
                      .+.  ..+.+|+++.+.+.+..  ..   ....+.+++.||+++.++.|+++..++....+.   ..+|+..    .+|.
T Consensus       161 ~L~--~~g~~Vtli~~~~~~~~--~~---~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~  233 (555)
T TIGR03143       161 FLT--RYASKVTVIVREPDFTC--AK---LIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDA  233 (555)
T ss_pred             HHH--ccCCEEEEEEeCCcccc--CH---HHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccc
Confidence            887  66899999998876421  11   122233345699999999999997544322222   3456532    3666


Q ss_pred             ----EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC
Q 023975          211 ----HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       211 ----vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~  261 (274)
                          |++++|..|+..++.. ++  .++++|++.||++++| +.|+|||+|||+.
T Consensus       234 ~~~~Vi~a~G~~Pn~~l~~~-~l--~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~  284 (555)
T TIGR03143       234 GTFGVFVFVGYAPSSELFKG-VV--ELDKRGYIPTNEDMET-NVPGVYAAGDLRP  284 (555)
T ss_pred             cceEEEEEeCCCCChhHHhh-hc--ccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence                9999999999988765 33  5677899999999999 8999999999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.95  E-value=2.2e-27  Score=205.01  Aligned_cols=239  Identities=21%  Similarity=0.235  Sum_probs=162.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---cCC-ccccceee-eccccc--cccEEEE-E
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEP-SFGKRSVI-NHTDYL--VNGRIVA-S   82 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---~~~-~~~~~~~~-~~~~~~--~~~~~~~-~   82 (274)
                      ..+||+||||||+|++||.+|+ .|++|+|+++.  +|+.+......   ... ......+. ...+..  .++++.. .
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~  287 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ  287 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence            4689999999999999999997 49999999864  56544321110   000 00000000 000001  1233332 2


Q ss_pred             eeEEEec----CeEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhHH
Q 023975           83 PAINITE----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVELA  136 (274)
Q Consensus        83 ~~~~~~~----~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~a  136 (274)
                      .+..+..    ..+.+.++.++.++.+|+|+|..+..++.+.                      +.+..+++|.+|+|+|
T Consensus       288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A  367 (517)
T PRK15317        288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA  367 (517)
T ss_pred             EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence            3333332    1456677778999999999999765443221                      1222344489999999


Q ss_pred             HHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECC---CC--cEEeec
Q 023975          137 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TG--DTINAD  209 (274)
Q Consensus       137 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~~~~d  209 (274)
                      ..|.  ..+.+++++.+.+.+..      ...+.+.+.+ .||+++.++.+.+++.+++.+ .+.+.   +|  +++++|
T Consensus       368 ~~L~--~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D  439 (517)
T PRK15317        368 IDLA--GIVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE  439 (517)
T ss_pred             HHHH--hcCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence            9998  56889999988776432      2345556665 699999999999998765543 24432   33  369999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .|++++|..|+.+++...   +.++++|++.+|++++| +.|+|||+|||++.+.
T Consensus       440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~  490 (517)
T PRK15317        440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY  490 (517)
T ss_pred             EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence            999999999999988764   35677899999999998 8999999999998764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.95  E-value=2.9e-28  Score=206.73  Aligned_cols=239  Identities=20%  Similarity=0.161  Sum_probs=157.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeeccccc--cccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (274)
                      ...++|+|||||++||++|+.|+ +|++|+|+|+.+.+|+.+.   ..+.. ...........+.+  .++++.....+ 
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~---~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v-  206 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT---YGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV-  206 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee---ecCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc-
Confidence            34689999999999999999998 5999999999887764321   11110 00001000001111  13444433322 


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCC-CCCC---ChhHH-------------------------------HHHHHccCCch
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGH-KDPV---PKTRT-------------------------------ERLNQYQAGPT  131 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~-~~~~---~~~~~-------------------------------~~~~~~~~g~~  131 (274)
                        .+.+.+++. ...||++++|||+ .|..   |+.+.                               +++..+++|.+
T Consensus       207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~  283 (449)
T TIGR01316       207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT  283 (449)
T ss_pred             --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence              122333322 3479999999998 4543   33210                               11122344899


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEECC--------
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS--------  201 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~--------  201 (274)
                      ++|+|..+.  ..+++|+++.+....-  +  .......+.+++.||++++++.+.++..++ +.+ .+.+.        
T Consensus       284 a~d~A~~l~--~~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~  357 (449)
T TIGR01316       284 AVDSARTAL--RLGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQI  357 (449)
T ss_pred             HHHHHHHHH--HcCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcC
Confidence            999999988  5688899998875411  1  122334466788999999999999987543 322 23321        


Q ss_pred             -CC-----------cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          202 -TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 -~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                       +|           .++++|.||+|+|..|+..++...++  .++.+|++.||+.++| +.|+||++|||++.+..
T Consensus       358 ~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~~  430 (449)
T TIGR01316       358 DSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAAT  430 (449)
T ss_pred             CCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcHH
Confidence             22           26999999999999999887776655  5677899999999998 89999999999975544

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=99.94  E-value=3.7e-27  Score=200.38  Aligned_cols=240  Identities=18%  Similarity=0.181  Sum_probs=153.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccc-eeeeccccc--cccEEEEEeeE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKR-SVINHTDYL--VNGRIVASPAI   85 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~   85 (274)
                      .+.+||+||||||+||++|+.|+ +|++|+|+|+.+.+|+.+.   ..+.. .+... ......+++  .++++.....+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v  214 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV---YGIPEFRLPKETVVKKEIENIKKLGVKIETNVVV  214 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee---ecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence            45689999999999999999998 4999999999888774431   11110 00111 110011111  13444333322


Q ss_pred             EEecCeEEeCCC-eEEecCEEEEccCC-CCC---CChhHH------------------------------HHHHHccCCc
Q 023975           86 NITENEVLTAEG-RRVVYDYLVIATGH-KDP---VPKTRT------------------------------ERLNQYQAGP  130 (274)
Q Consensus        86 ~~~~~~v~~~~~-~~~~~~~li~a~G~-~~~---~~~~~~------------------------------~~~~~~~~g~  130 (274)
                      .   +.+..++. ..+.||++++|||+ .|.   +|+.+.                              +++..+++|+
T Consensus       215 ~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  291 (464)
T PRK12831        215 G---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN  291 (464)
T ss_pred             C---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence            1   12222222 23569999999998 454   333110                              1122234499


Q ss_pred             hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEECC-------
Q 023975          131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS-------  201 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~-------  201 (274)
                      +|+|+|..+.  ..+++|+++.+...  ..+.. ....+ +.+++.||++++++.+.++..++ +.+ .+.+.       
T Consensus       292 va~d~A~~l~--r~Ga~Vtlv~r~~~--~~m~a-~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  365 (464)
T PRK12831        292 VAMDAARTAL--RLGAEVHIVYRRSE--EELPA-RVEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP  365 (464)
T ss_pred             HHHHHHHHHH--HcCCEEEEEeecCc--ccCCC-CHHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence            9999999888  56888999987653  11111 11222 34667899999999998886543 222 12211       


Q ss_pred             -----------CCc--EEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCC
Q 023975          202 -----------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 -----------~g~--~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                                 +|+  ++++|.||+|+|..|+..++.. .++  .++.+|++.+|+. ++| +.|+||++|||+..+..
T Consensus       366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~~  441 (464)
T PRK12831        366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAAT  441 (464)
T ss_pred             CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCchH
Confidence                       222  6999999999999998887765 455  4667899999988 888 89999999999876544

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.94  E-value=7.1e-27  Score=193.02  Aligned_cols=247  Identities=19%  Similarity=0.134  Sum_probs=155.2

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceee-eccccc-cccEEEEEeeE
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI-NHTDYL-VNGRIVASPAI   85 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~   85 (274)
                      ++...++|+|||+|++|+++|..|+ +|++|+++|+.+.+++.+...  ............ ....+. .++++.....+
T Consensus        14 ~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v   91 (352)
T PRK12770         14 PPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEFRIPIERVREGVKELEEAGVVFHTRTKV   91 (352)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--CcccccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence            3445689999999999999999997 599999999998876432210  000000000000 000010 13333322222


Q ss_pred             EEe-------c-----CeEEeCCCeEEecCEEEEccCCC-CC---CChhHHH----------------------------
Q 023975           86 NIT-------E-----NEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTE----------------------------  121 (274)
Q Consensus        86 ~~~-------~-----~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~~----------------------------  121 (274)
                      ...       .     +.+..+ +..+.||++|+|||+. +.   +|+.+..                            
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T PRK12770         92 CCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV  170 (352)
T ss_pred             eeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence            110       0     011111 1246899999999983 43   3332110                            


Q ss_pred             ---HHHHccCCchhhhHHHHhhhhCCCCe-EEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee
Q 023975          122 ---RLNQYQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  197 (274)
Q Consensus       122 ---~~~~~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  197 (274)
                         .+..+++|.+++|+|..+.  ..+.+ ++++.+.+....    .....+.+.++++||++++++.+.+++.++....
T Consensus       171 ~g~~vvViG~G~~g~e~A~~l~--~~g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~  244 (352)
T PRK12770        171 EGKKVVVVGAGLTAVDAALEAV--LLGAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG  244 (352)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence               1112234889999999887  34665 999887653211    1224455668899999999999999875543223


Q ss_pred             EEC--------------------CCCcEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCCCccccCCCCeEEe
Q 023975          198 YLT--------------------STGDTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDENLRVKGQKNIFAI  256 (274)
Q Consensus       198 v~~--------------------~~g~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~  256 (274)
                      +.+                    .+++++++|.||+++|..|+..+... .++  .++++|++.||+++++ +.|+||++
T Consensus       245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vyai  321 (352)
T PRK12770        245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGI--ELNRKGEIVVDEKHMT-SREGVFAA  321 (352)
T ss_pred             EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCc--eecCCCcEeeCCCccc-CCCCEEEE
Confidence            321                    12357999999999999998876655 444  5667889999999998 89999999


Q ss_pred             ccccCCCCCCC
Q 023975          257 GDITDIRVSAS  267 (274)
Q Consensus       257 Gd~~~~~~~~~  267 (274)
                      |||++.+....
T Consensus       322 GD~~~~~~~~~  332 (352)
T PRK12770        322 GDVVTGPSKIG  332 (352)
T ss_pred             cccccCcchHH
Confidence            99998665443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.94  E-value=3e-26  Score=204.90  Aligned_cols=238  Identities=21%  Similarity=0.249  Sum_probs=155.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (274)
                      ...++|+||||||||+++|+.|+ +|++|+|+|+.+.+|+...   ..+... ..........++.  .++++.....+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr---~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd  613 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK---NIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD  613 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee---eecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence            35689999999999999999998 4999999999988875432   111110 0001110111111  134443333221


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCCCC----CChhH------HH----------------HHHHccCCchhhhHHHHhh
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TE----------------RLNQYQAGPTGVELAGEIA  140 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~------~~----------------~~~~~~~g~~~~e~a~~l~  140 (274)
                           +..++.....||+||+|||+.+.    +|+..      ..                ++..+++|.+|+|+|..+.
T Consensus       614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~  688 (1019)
T PRK09853        614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL  688 (1019)
T ss_pred             -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence                 23334455679999999999732    22211      11                1222345999999998766


Q ss_pred             hhCCC-CeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-----------------EECC
Q 023975          141 VDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-----------------YLTS  201 (274)
Q Consensus       141 ~~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~~  201 (274)
                      + ..+ .+|+++.+... ..+.    ..+.+.+.+ +.||+++.++.+.++..+ +.+.                 +...
T Consensus       689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg  761 (1019)
T PRK09853        689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETG  761 (1019)
T ss_pred             h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCC
Confidence            3 334 48999988653 2232    233444443 479999998888887532 2221                 2233


Q ss_pred             CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      ++.++++|.||+|+|..|+.+++...++  .++++|++.||+.++| +.|+|||+|||+..|...
T Consensus       762 ~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~tv  823 (1019)
T PRK09853        762 ETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPSTI  823 (1019)
T ss_pred             CeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCchHH
Confidence            3458999999999999999998876665  5677899999999998 899999999998766543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.94  E-value=3.1e-26  Score=195.34  Aligned_cols=237  Identities=22%  Similarity=0.232  Sum_probs=152.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (274)
                      ...++|+||||||+|+++|..|+ +|++|+|+|+.+.+|+.+..   .... ...........+++.  ++++.....+.
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~---gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  214 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY---GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVG  214 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec---cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence            44689999999999999999997 59999999999887643211   1100 000000011111111  34443333221


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH----------H---------------HHHHHccCCchhhhHHH
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR----------T---------------ERLNQYQAGPTGVELAG  137 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~----------~---------------~~~~~~~~g~~~~e~a~  137 (274)
                         ..+..++. ...||++|+|||+. +.   +|+..          .               +++..+++|.+++|+|.
T Consensus       215 ---~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~  290 (457)
T PRK11749        215 ---RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAAR  290 (457)
T ss_pred             ---CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHH
Confidence               11222222 36799999999985 33   23211          0               11122344889999999


Q ss_pred             HhhhhCCCC-eEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc---eeEE-------------
Q 023975          138 EIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL-------------  199 (274)
Q Consensus       138 ~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~-------------  199 (274)
                      .+.  ..+. +|+++.+.... ++.     .....+.+++.||+++.++.+.++..+++.   +.+.             
T Consensus       291 ~l~--~~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~  363 (457)
T PRK11749        291 TAK--RLGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRR  363 (457)
T ss_pred             HHH--HcCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCc
Confidence            987  4555 89999876432 221     123456678899999999999998765543   2221             


Q ss_pred             ----CCCCcEEeecEEEEcccCCCCchhhc-ccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCC
Q 023975          200 ----TSTGDTINADCHFLCTGKPVGSDWLK-DTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       200 ----~~~g~~~~~d~vv~a~G~~~~~~~~~-~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                          ..+++++++|.||+|+|..|+..++. ..++  .++.+|++.+|. .++| +.|+||++|||+..+.
T Consensus       364 ~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl--~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~~  431 (457)
T PRK11749        364 RVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGL--ELNRWGTIIADDETGRT-SLPGVFAGGDIVTGAA  431 (457)
T ss_pred             ccCCCCceEEEECCEEEECccCCCCchhhccccCc--cCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCch
Confidence                01234799999999999999876654 2334  567889999998 7887 8999999999996544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.93  E-value=5.8e-26  Score=205.63  Aligned_cols=240  Identities=15%  Similarity=0.174  Sum_probs=155.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      ..++|+|||||||||+||+.|+ +|++|+|||+.+.+|+.   +.+.+... ...+......+.+  .++++.....+. 
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~---l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG-  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV---LRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG-  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce---EEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-
Confidence            4689999999999999999997 59999999999888743   22222111 1111111111111  144554433322 


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH-------H-------------------------HHHHHccCCch
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------T-------------------------ERLNQYQAGPT  131 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~-------~-------------------------~~~~~~~~g~~  131 (274)
                        +.+.+++.....||++++|||+. |.   +|+.+       .                         +++..+++|.+
T Consensus       381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t  458 (944)
T PRK12779        381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT  458 (944)
T ss_pred             --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence              23555555566899999999985 43   34321       0                         11223445999


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ce-eEEC-------
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SD-TYLT-------  200 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~-------  200 (274)
                      |+|+|..+.  ..+++|+++.+... ..+    .....+.+ +.+.|++++++..++++..+++  .+ .+.+       
T Consensus       459 A~D~A~ta~--R~Ga~Vtlv~rr~~~~mp----a~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~  531 (944)
T PRK12779        459 AMDAARTAK--RLGGNVTIVYRRTKSEMP----ARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE  531 (944)
T ss_pred             HHHHHHHHH--HcCCEEEEEEecCccccc----ccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence            999999988  67889999887643 122    12233333 4567999999998888865432  12 1111       


Q ss_pred             --C--------CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCCC
Q 023975          201 --S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       201 --~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                        .        +|  .+++||.||+|+|+.|+..+ .....++.++++|.+.+|+ .++| +.|+|||+|||+..+...
T Consensus       532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l-~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~~v  608 (944)
T PRK12779        532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIM-KDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGSTA  608 (944)
T ss_pred             ccCcCceeeecCCceEEEECCEEEEcCCcCCChhh-hhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChHHH
Confidence              1        23  36999999999999997643 3333344667889999997 4777 899999999999765443

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.93  E-value=1.8e-25  Score=200.89  Aligned_cols=236  Identities=21%  Similarity=0.251  Sum_probs=150.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      ..++|+|||||||||+||+.|+ +|++|+|+|+.+.+|+...   ..+... ..........+++  .++++.....   
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~---~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~---  609 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK---NIIPEFRISAESIQKDIELVKFHGVEFKYGCS---  609 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee---ecccccCCCHHHHHHHHHHHHhcCcEEEEecc---
Confidence            4589999999999999999998 4999999999988875432   111110 0001110111111  1334433211   


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCCCC----CChh------HH----------------HHHHHccCCchhhhHHHHhhh
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKT------RT----------------ERLNQYQAGPTGVELAGEIAV  141 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~------~~----------------~~~~~~~~g~~~~e~a~~l~~  141 (274)
                        ..+..++.....||+|++|||+.+.    +++.      ..                +++..+++|.+|+|+|..+..
T Consensus       610 --~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R  687 (1012)
T TIGR03315       610 --PDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR  687 (1012)
T ss_pred             --cceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence              1122333345679999999998732    2221      01                112234559999999987763


Q ss_pred             hCCC-CeEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---------------CCCCc
Q 023975          142 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---------------TSTGD  204 (274)
Q Consensus       142 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---------------~~~g~  204 (274)
                       ..+ .+|+++.+... ..+.    ..+.+.+.+ +.||++..+..+.+++  ++.+.+.               ..+|+
T Consensus       688 -l~Ga~kVtLVyRr~~~~Mpa----~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Ge  759 (1012)
T TIGR03315       688 -VPGVEKVTVVYRRTKRYMPA----SREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGE  759 (1012)
T ss_pred             -hCCCceEEEEEccCcccccc----CHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCC
Confidence             335 48999887653 2222    223444433 5799999888877775  2222211               11233


Q ss_pred             --EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCCC
Q 023975          205 --TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       205 --~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                        +++||.||+|+|..|+..++...++  .++.+|++.+|+. ++| +.|+||++|||+..|...
T Consensus       760 e~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~tV  821 (1012)
T TIGR03315       760 TVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPATI  821 (1012)
T ss_pred             eEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccHH
Confidence              6899999999999999998876555  5678899999986 787 899999999998666543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.93  E-value=9.5e-26  Score=190.99  Aligned_cols=246  Identities=22%  Similarity=0.291  Sum_probs=195.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEE-EeeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVA-SPAI   85 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~~~   85 (274)
                      .+++|||.|++|..+...+.   + -++++++-..++..+....++..+.+. ..++......+|+.  +++++. ..++
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~   83 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI   83 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence            68999999999999987764   2 679999999998888877777776553 33444555556665  444433 3444


Q ss_pred             EEe--cCeEEeCCCeEEecCEEEEccCCCCCCChhH------------HHHHH-------------HccCCchhhhHHHH
Q 023975           86 NIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLN-------------QYQAGPTGVELAGE  138 (274)
Q Consensus        86 ~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~------------~~~~~-------------~~~~g~~~~e~a~~  138 (274)
                      .++  .+.|.++.|..+.||.|++|||+.|++++.+            .+.+.             .+++|..++|.|..
T Consensus        84 ~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~  163 (793)
T COG1251          84 QIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG  163 (793)
T ss_pred             EeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHH
Confidence            554  4588899999999999999999998877632            11111             13348899999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          139 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      |.  ..+.++++++-.+.+.. +.++.....+++.+++.|++++++...+++...+....+.++||..+++|.||+|+|+
T Consensus       164 L~--~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GI  241 (793)
T COG1251         164 LK--DLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGI  241 (793)
T ss_pred             HH--hCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccc
Confidence            98  67888999988877654 6777788889999999999999999998888766677899999999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|+.++....++  ..+  .+|.||.+++| ++|+|||+|+|+.+....
T Consensus       242 rPn~ela~~aGl--avn--rGIvvnd~mqT-sdpdIYAvGEcae~~g~~  285 (793)
T COG1251         242 RPNDELAKEAGL--AVN--RGIVVNDYMQT-SDPDIYAVGECAEHRGKV  285 (793)
T ss_pred             ccccHhHHhcCc--CcC--CCeeecccccc-cCCCeeehhhHHHhcCcc
Confidence            999999988887  333  37999999999 899999999999765544

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.93  E-value=9.5e-25  Score=174.06  Aligned_cols=250  Identities=30%  Similarity=0.384  Sum_probs=175.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecc----ccccccEEEEEeeEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHT----DYLVNGRIVASPAIN   86 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   86 (274)
                      ..++|+|+|+|.+|.+.+..|- .-++|+|+.+.+++-++|-.-+.............+..    .......++......
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~~  133 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECTK  133 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccEe
Confidence            4589999999999999999997 58999999999998877654222221111111111111    111134555555555


Q ss_pred             EecC--eEEe----CCC----eEEecCEEEEccCCCCCCChhH--------------HHHH-------------------
Q 023975           87 ITEN--EVLT----AEG----RRVVYDYLVIATGHKDPVPKTR--------------TERL-------------------  123 (274)
Q Consensus        87 ~~~~--~v~~----~~~----~~~~~~~li~a~G~~~~~~~~~--------------~~~~-------------------  123 (274)
                      +++.  .+.+    .++    ..+.||+||+|+|+.+..++++              .+.+                   
T Consensus       134 iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~e  213 (491)
T KOG2495|consen  134 IDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDE  213 (491)
T ss_pred             ecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChH
Confidence            5543  3332    333    5789999999999986544421              0000                   


Q ss_pred             --------HHccCCchhhhHHHHhhhh--------CC----CCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcC
Q 023975          124 --------NQYQAGPTGVELAGEIAVD--------FP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG  183 (274)
Q Consensus       124 --------~~~~~g~~~~e~a~~l~~~--------~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~  183 (274)
                              -.+++|++|.|.|.+|.+.        ++    ..+++++...+.+++.++..+.+...+.+.+.||.+..+
T Consensus       214 erkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~  293 (491)
T KOG2495|consen  214 ERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTG  293 (491)
T ss_pred             HhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecc
Confidence                    1123399999999988753        22    247899999999999999999999999999999999999


Q ss_pred             ceeeeeccCCCceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCC--cEEeCCCccccCCCCeEEeccc
Q 023975          184 ERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGDI  259 (274)
Q Consensus       184 ~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~i~~~Gd~  259 (274)
                      +.|..+.  +..+.+...+|  ++|++..+|++||..| .++......  ..++.|  ++.+|+.++.++.+||||+|||
T Consensus       294 t~Vk~V~--~~~I~~~~~~g~~~~iPYG~lVWatG~~~-rp~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGDc  368 (491)
T KOG2495|consen  294 TMVKKVT--EKTIHAKTKDGEIEEIPYGLLVWATGNGP-RPVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGDC  368 (491)
T ss_pred             cEEEeec--CcEEEEEcCCCceeeecceEEEecCCCCC-chhhhhHhh--cCCccCceeeeeeceeeccCcCceEEeccc
Confidence            9999886  33555666666  4899999999999877 444444333  334455  8999999999999999999999


Q ss_pred             cCCCCCC
Q 023975          260 TDIRVSA  266 (274)
Q Consensus       260 ~~~~~~~  266 (274)
                      +..+..+
T Consensus       369 a~~~~~~  375 (491)
T KOG2495|consen  369 ADQRGLK  375 (491)
T ss_pred             cccccCc
Confidence            9554443

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.93  E-value=9e-26  Score=202.72  Aligned_cols=241  Identities=18%  Similarity=0.156  Sum_probs=153.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (274)
                      ...++|+|||||||||+||+.|+ +|++|+|+|+.+.+|+...   ..+.. .+.........+.+.  ++++.....+ 
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v-  504 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK---YGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV-  504 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE-
Confidence            34689999999999999999997 5999999999887764321   11110 011111101011111  3444333222 


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH---------H---------------------HHHHHccCCchh
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR---------T---------------------ERLNQYQAGPTG  132 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~---------~---------------------~~~~~~~~g~~~  132 (274)
                        .+.+.+++.....||++++|||+. |.   +|+.+         .                     +++-.+++|.+|
T Consensus       505 --~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a  582 (752)
T PRK12778        505 --GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA  582 (752)
T ss_pred             --CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHH
Confidence              122334344456799999999984 44   33311         0                     122234458999


Q ss_pred             hhHHHHhhhhCCCCe-EEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ce-eEECC-------
Q 023975          133 VELAGEIAVDFPEKK-VTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS-------  201 (274)
Q Consensus       133 ~e~a~~l~~~~~~~~-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~-------  201 (274)
                      +|+|..+.  ..+++ |+++.+.+.. .+.    .... .+.+++.||+++.++.+.++..+++ .+ .+++.       
T Consensus       583 ~d~A~~~~--r~Ga~~Vtlv~r~~~~~~~~----~~~e-~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~  655 (752)
T PRK12778        583 MDSARTAK--RLGAERVTIVYRRSEEEMPA----RLEE-VKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEP  655 (752)
T ss_pred             HHHHHHHH--HcCCCeEEEeeecCcccCCC----CHHH-HHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCc
Confidence            99999887  56775 9999876531 221    1122 2457788999999998888865432 22 22221       


Q ss_pred             --C---------C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          202 --T---------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       202 --~---------g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                        +         |  .+++||.||+|+|+.|+..++... .++.++.+|++.+|++++| +.|+|||+|||+..+...
T Consensus       656 ~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~~v  731 (752)
T PRK12778        656 DASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGATV  731 (752)
T ss_pred             CCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcHHH
Confidence              1         2  269999999999999987665442 1235677899999999988 899999999999765443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.92  E-value=6.4e-24  Score=180.12  Aligned_cols=232  Identities=21%  Similarity=0.342  Sum_probs=164.5

Q ss_pred             HHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeec--cccc--cccEEE-EEeeEEEe--cCeEEeC
Q 023975           27 LVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPAINIT--ENEVLTA   95 (274)
Q Consensus        27 ~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~~~~~--~~~v~~~   95 (274)
                      +||..|+   ++++|+|||+++.+.+.+..+......... .+....+  ..+.  .++++. ...+..++  .+.+.+.
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~   80 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR   80 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence            4677776   368999999999877655434333322211 1111111  1121  145553 34555555  3344443


Q ss_pred             ---CCeEEe--cCEEEEccCCCCCCChhHH---------------H------------HHHHccCCchhhhHHHHhhhhC
Q 023975           96 ---EGRRVV--YDYLVIATGHKDPVPKTRT---------------E------------RLNQYQAGPTGVELAGEIAVDF  143 (274)
Q Consensus        96 ---~~~~~~--~~~li~a~G~~~~~~~~~~---------------~------------~~~~~~~g~~~~e~a~~l~~~~  143 (274)
                         ++..+.  ||++|+|||+.|..|+.+.               .            ++..+++|.+++|+|..+.  .
T Consensus        81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~--~  158 (427)
T TIGR03385        81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR--E  158 (427)
T ss_pred             ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH--h
Confidence               234677  9999999999865443211               0            1122344889999999888  5


Q ss_pred             CCCeEEEEeCCCccC-CcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          144 PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       144 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+.+++++.+.+.++ +..++.+...+.+.+++.||+++.++.+.++..++. + +.+.+|+++++|.+|+|+|..|+.+
T Consensus       159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence            688999999988763 566778888899999999999999999999975433 3 4567788999999999999999999


Q ss_pred             hhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          223 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      ++...++  .++++|++.||++++| +.|+||++|||++.+..
T Consensus       237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~  276 (427)
T TIGR03385       237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI  276 (427)
T ss_pred             HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence            8877665  5677899999999998 89999999999986543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.92  E-value=1.5e-24  Score=185.32  Aligned_cols=243  Identities=17%  Similarity=0.156  Sum_probs=148.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (274)
                      ...++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+.+.   ..+... ..........+++.  ++++.....+.
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~---~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  217 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR---YGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVG  217 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee---ecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence            34589999999999999999997 5999999999988874321   111100 00000001111111  34443333221


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCC-CC---CChhHHH------------------------------HHHHccCCchh
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRTE------------------------------RLNQYQAGPTG  132 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~~------------------------------~~~~~~~g~~~  132 (274)
                      .+   +.. +.....||++++|+|+. +.   +|+.+..                              ++..+++|+++
T Consensus       218 ~~---~~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g  293 (471)
T PRK12810        218 KD---ITA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTG  293 (471)
T ss_pred             Cc---CCH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHH
Confidence            11   001 11134799999999997 43   3332110                              11123348999


Q ss_pred             hhHHHHhhhhCCC-CeEEEEeCCCccCCcC-C----hhHH-HHHHHHHHhCCcEEEcCceeeeeccCCCcee-EE-----
Q 023975          133 VELAGEIAVDFPE-KKVTLVHKGSRLLEFI-G----PKAG-DKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL-----  199 (274)
Q Consensus       133 ~e~a~~l~~~~~~-~~v~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~-----  199 (274)
                      +|+|..+.  ..+ .+++.....+...... .    +... ....+.+++.||++++++.++++..+++.+. |+     
T Consensus       294 ~e~A~~~~--~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~  371 (471)
T PRK12810        294 MDCVGTAI--RQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTE  371 (471)
T ss_pred             HHHHHHHH--HcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEE
Confidence            99998766  344 4777554433221110 0    0011 1134567788999999999999975444332 22     


Q ss_pred             CCCC---------cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeC-CCccccCCCCeEEeccccCCCCC
Q 023975          200 TSTG---------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       200 ~~~g---------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      ..+|         +++++|.||+|+|..|+. .++...++  .++.+|.+.+| ++++| +.|+||++|||++.+..
T Consensus       372 ~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~~  445 (471)
T PRK12810        372 LGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQSL  445 (471)
T ss_pred             ecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCchh
Confidence            2222         479999999999999874 46655554  56778999998 68888 89999999999975543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.91  E-value=2.2e-24  Score=190.30  Aligned_cols=238  Identities=19%  Similarity=0.197  Sum_probs=150.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      ..++|+||||||+||++|+.|+ .|++|+|+|+.+.+|+.+.   ..+... ..........+.+  .++++.....+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~---~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~  268 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR---YGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR  268 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee---ecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC
Confidence            4589999999999999999998 5999999999998875432   111100 0000000000111  1333332222111


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH-------H---------------HHHHccCCchhhhHHHHhhh
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-------E---------------RLNQYQAGPTGVELAGEIAV  141 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~-------~---------------~~~~~~~g~~~~e~a~~l~~  141 (274)
                         .+...+. ...||++++|||+.+    .+|+.+.       .               ++..+++|.+++|+|..+. 
T Consensus       269 ---dv~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~-  343 (652)
T PRK12814        269 ---DITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTAL-  343 (652)
T ss_pred             ---ccCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHH-
Confidence               1112111 235999999999873    2333211       1               1112344899999999877 


Q ss_pred             hCCCC-eEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE---C---------------C
Q 023975          142 DFPEK-KVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---T---------------S  201 (274)
Q Consensus       142 ~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~---------------~  201 (274)
                       ..+. +|+++.+... .++..    ...+.+. .+.||+++.++.+.++..+++...+.   +               .
T Consensus       344 -~~Ga~~Vtlv~r~~~~~mpa~----~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~  417 (652)
T PRK12814        344 -RLGAESVTILYRRTREEMPAN----RAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPV  417 (652)
T ss_pred             -HcCCCeEEEeeecCcccCCCC----HHHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceec
Confidence             4454 7999887653 23322    2233333 45799999999888887555443221   1               1


Q ss_pred             CCc--EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCCC
Q 023975          202 TGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       202 ~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|+  ++++|.||+|+|..|+..++...++  .++.+|++.+|+ .++| +.|+|||+|||+..+...
T Consensus       418 ~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~v  482 (652)
T PRK12814        418 EGSEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADIA  482 (652)
T ss_pred             CCceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchHH
Confidence            222  6899999999999999888876665  566789999997 4777 899999999999766543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=192.40  Aligned_cols=239  Identities=18%  Similarity=0.170  Sum_probs=147.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      +.++|+|||||||||+||..|+ +|++|+|||+.+.+|+.   +...+... ...+......+.+  .++++.....+. 
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~---l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-  504 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV---LQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-  504 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce---eeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-
Confidence            4689999999999999999997 59999999999888742   21111111 0011111111111  144444333221 


Q ss_pred             ecCeEEeCCCe-EEecCEEEEccCCC-CC---CChhHH-------------------------------HHHHHccCCch
Q 023975           88 TENEVLTAEGR-RVVYDYLVIATGHK-DP---VPKTRT-------------------------------ERLNQYQAGPT  131 (274)
Q Consensus        88 ~~~~v~~~~~~-~~~~~~li~a~G~~-~~---~~~~~~-------------------------------~~~~~~~~g~~  131 (274)
                        ..+..++.. ...||+||+|||+. |.   +|+...                               +++..+++|++
T Consensus       505 --~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t  582 (1006)
T PRK12775        505 --KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT  582 (1006)
T ss_pred             --CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence              112221111 24699999999984 43   343110                               11222345999


Q ss_pred             hhhHHHHhhhhCCCC-eEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC--------
Q 023975          132 GVELAGEIAVDFPEK-KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--------  200 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--------  200 (274)
                      |+|+|..+.  ..|+ .|+++.+....-  . +... .-.+.+++.||++++++.+.++..++ +.+ .+.+        
T Consensus       583 A~D~A~~a~--rlGa~~Vtiv~rr~~~e--m-~a~~-~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~  656 (1006)
T PRK12775        583 AMDCLRVAK--RLGAPTVRCVYRRSEAE--A-PARI-EEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP  656 (1006)
T ss_pred             HHHHHHHHH--HcCCCEEEEEeecCccc--C-CCCH-HHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence            999887776  4555 577776643211  1 1111 12245777899999999988886433 322 2221        


Q ss_pred             -C--------CC--cEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCC-----CccccCCCCeEEeccccCCC
Q 023975          201 -S--------TG--DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       201 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~-----~~~~~~~~~i~~~Gd~~~~~  263 (274)
                       .        +|  .++++|.||+|+|..|+..++.. .++  .++.+|.+.+|+     .++| +.|+|||+|||+..+
T Consensus       657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~  733 (1006)
T PRK12775        657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGL--ALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGG  733 (1006)
T ss_pred             CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCc--ccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCc
Confidence             1        12  26999999999999998776543 234  566789999996     6787 899999999998765


Q ss_pred             CC
Q 023975          264 VS  265 (274)
Q Consensus       264 ~~  265 (274)
                      ..
T Consensus       734 ~~  735 (1006)
T PRK12775        734 AT  735 (1006)
T ss_pred             cH
Confidence            54

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.90  E-value=1.1e-23  Score=186.66  Aligned_cols=238  Identities=16%  Similarity=0.178  Sum_probs=148.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      +.++|+|||||||||++|..|+ .|++|+|+|+.+.+|+...   ..+.. .+.........+++.  ++++.....+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~---~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT---FGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee---ecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence            4689999999999999999998 4999999999988874322   11111 000111100111111  233322221111


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH---------------------------------HHHHHccCCc
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT---------------------------------ERLNQYQAGP  130 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~---------------------------------~~~~~~~~g~  130 (274)
                         .+..++ ....||.+++|+|+..    .+|+...                                 +++..+++|.
T Consensus       403 ---~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  478 (654)
T PRK12769        403 ---DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD  478 (654)
T ss_pred             ---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence               111111 1246999999999852    2222110                                 0112234488


Q ss_pred             hhhhHHHHhhhhCCCC-eEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC------
Q 023975          131 TGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT------  200 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------  200 (274)
                      +++|+|..+.  ..++ +|+++.+.+.. .+.     .....+.+++.||++++++.+.++..++ +.+ .+++      
T Consensus       479 ~a~d~A~~a~--r~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  551 (654)
T PRK12769        479 TAMDCVRTAL--RHGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLG  551 (654)
T ss_pred             HHHHHHHHHH--HcCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEec
Confidence            9999988765  3454 78988876542 221     2233456788999999999888886432 322 2222      


Q ss_pred             ---CCC---------c--EEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeCC----CccccCCCCeEEeccccC
Q 023975          201 ---STG---------D--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       201 ---~~g---------~--~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~~----~~~~~~~~~i~~~Gd~~~  261 (274)
                         .+|         +  ++++|.||+|+|+.|+. .++...++  .++.+|.+.+|.    +++| +.++|||+||++.
T Consensus       552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~  628 (654)
T PRK12769        552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVR  628 (654)
T ss_pred             CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCC
Confidence               122         2  69999999999999974 45555554  677889999986    4788 8999999999987


Q ss_pred             CCCCC
Q 023975          262 IRVSA  266 (274)
Q Consensus       262 ~~~~~  266 (274)
                      .+...
T Consensus       629 g~~~v  633 (654)
T PRK12769        629 GADLV  633 (654)
T ss_pred             CCcHH
Confidence            66553

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.4e-23  Score=161.43  Aligned_cols=257  Identities=18%  Similarity=0.189  Sum_probs=169.8

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC--CCceeeccceeeecC----------------Cc---------
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK--EYFEITWASLRAMVE----------------PS---------   61 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~--~~~g~~~~~~~~~~~----------------~~---------   61 (274)
                      .+-.||.+|||||.+||+||.+.+. |.+|.++|--  ...|..|+.-....+                ..         
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW   95 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW   95 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            3446999999999999999999985 9999999832  223333432111000                00         


Q ss_pred             -cccc-ee-------------eeccccccccEE-------EEEeeEEEecCeEEe--CCC--eEEecCEEEEccCCCCCC
Q 023975           62 -FGKR-SV-------------INHTDYLVNGRI-------VASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPV  115 (274)
Q Consensus        62 -~~~~-~~-------------~~~~~~~~~~~~-------~~~~~~~~~~~~v~~--~~~--~~~~~~~li~a~G~~~~~  115 (274)
                       ..+. ..             ....+|...+++       ++.....++.+.+..  ..+  +.+.++.+++|||.+|..
T Consensus        96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY  175 (503)
T KOG4716|consen   96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY  175 (503)
T ss_pred             CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence             0000 00             000111111222       222223333333322  223  467889999999999887


Q ss_pred             ChhHH--------HHH----------HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCC
Q 023975          116 PKTRT--------ERL----------NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK  177 (274)
Q Consensus       116 ~~~~~--------~~~----------~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  177 (274)
                      |+++.        +.+          ...++++.++|+|..|.  -.+..+++..|+ .++.+++.++++.+.+.+++.|
T Consensus       176 p~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~G  252 (503)
T KOG4716|consen  176 PDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERG  252 (503)
T ss_pred             CCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHhC
Confidence            76442        111          22334899999999998  678888888775 4567899999999999999999


Q ss_pred             cEEEcCceeeeeccCCCc-eeEEC---CCC--cEEeecEEEEcccCCCCchhhcccccccccC-CCCcEEeCCCccccCC
Q 023975          178 VDVKLGERVNLDSVSEGS-DTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQ  250 (274)
Q Consensus       178 v~i~~~~~v~~i~~~~~~-~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~  250 (274)
                      +.+.....+..++..+++ ..|..   ..+  -+-++|.|++|.|..+..+-+.....+..++ ..|.|.+|+.-+| +.
T Consensus       253 ikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~v  331 (503)
T KOG4716|consen  253 IKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NV  331 (503)
T ss_pred             CceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CC
Confidence            999999888888866543 33332   222  2578999999999999877666555555554 3577899998888 89


Q ss_pred             CCeEEecccc-CCCCCCCCCC
Q 023975          251 KNIFAIGDIT-DIRVSASMIF  270 (274)
Q Consensus       251 ~~i~~~Gd~~-~~~~~~~~~~  270 (274)
                      |.|||+||+. +.|-+.++++
T Consensus       332 p~vyAvGDIl~~kpELTPvAI  352 (503)
T KOG4716|consen  332 PYVYAVGDILEDKPELTPVAI  352 (503)
T ss_pred             CceEEecceecCCcccchhhh
Confidence            9999999997 4555555544

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.90  E-value=1.8e-23  Score=178.15  Aligned_cols=237  Identities=17%  Similarity=0.167  Sum_probs=147.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      +.++|+||||||+|+++|..|+ +|++|+++|+.+.+|+...   ..+.. ...........+++.  ++++.....+  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~---~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v--  214 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT---FGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV--  214 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee---ecCccccCCHHHHHHHHHHHHHCCCEEECCCEe--
Confidence            4689999999999999999997 5999999999988774321   11111 000110001111111  2333222211  


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCCCC----CChhHHH---------------------------------HHHHccCCc
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRTE---------------------------------RLNQYQAGP  130 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~~~---------------------------------~~~~~~~g~  130 (274)
                      .. .+..++ ....||.+++|||+.+.    +|+.+.+                                 .+..+++|.
T Consensus       215 ~~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~  292 (467)
T TIGR01318       215 GR-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD  292 (467)
T ss_pred             CC-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence            10 111111 12479999999998752    3331110                                 111123378


Q ss_pred             hhhhHHHHhhhhCCC-CeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC------
Q 023975          131 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT------  200 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------  200 (274)
                      ++++.|..+.  ..+ .+|+++.+.+.. .+..     ....+.+++.||+++.++.+.++..++ +.+ .+++      
T Consensus       293 ~a~d~A~~a~--~~Ga~~Vtvv~r~~~~~~~~~-----~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  365 (467)
T TIGR01318       293 TAMDCVRTAI--RLGAASVTCAYRRDEANMPGS-----RREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALG  365 (467)
T ss_pred             HHHHHHHHHH--HcCCCeEEEEEecCcccCCCC-----HHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEec
Confidence            8999888766  455 479999876542 2221     223345677899999999998886433 222 1221      


Q ss_pred             ---CC---------C--cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeC----CCccccCCCCeEEeccccC
Q 023975          201 ---ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       201 ---~~---------g--~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~----~~~~~~~~~~i~~~Gd~~~  261 (274)
                         .+         |  .++++|.||+|+|+.|+. .++...++  .++++|++.+|    .+++| +.++||++|||++
T Consensus       366 ~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~  442 (467)
T TIGR01318       366 EPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVR  442 (467)
T ss_pred             ccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCC
Confidence               01         2  378999999999999974 45555444  56778999999    57887 7999999999997


Q ss_pred             CCCC
Q 023975          262 IRVS  265 (274)
Q Consensus       262 ~~~~  265 (274)
                      .+..
T Consensus       443 ~~~~  446 (467)
T TIGR01318       443 GADL  446 (467)
T ss_pred             CccH
Confidence            6654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.89  E-value=4.9e-22  Score=182.60  Aligned_cols=236  Identities=15%  Similarity=0.133  Sum_probs=149.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc----cccceeeeccccccccEEEE-EeeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS----FGKRSVINHTDYLVNGRIVA-SPAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~   86 (274)
                      .+||+|||||||||+||..|+ .|++|+|+|+++.+|+.+..........    +.......... +.++++.. ..++.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~v~v~~~t~V~~  241 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA-MPEVTLLPRTTAFG  241 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc-CCCcEEEcCCEEEE
Confidence            579999999999999999997 5999999999988875443211111000    00000000000 11233332 12222


Q ss_pred             EecC-eE--------E--------e-CCCeEEecCEEEEccCCCCCCCh---hHH---------------------HHHH
Q 023975           87 ITEN-EV--------L--------T-AEGRRVVYDYLVIATGHKDPVPK---TRT---------------------ERLN  124 (274)
Q Consensus        87 ~~~~-~v--------~--------~-~~~~~~~~~~li~a~G~~~~~~~---~~~---------------------~~~~  124 (274)
                      +... .+        .        . +....+.++++|+|||+.+..++   .+.                     +++.
T Consensus       242 i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~Vv  321 (985)
T TIGR01372       242 YYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIV  321 (985)
T ss_pred             EecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEE
Confidence            2111 00        0        0 11126889999999999854432   111                     1111


Q ss_pred             HccCCchhhhHHHHhhhhCCC-CeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC--
Q 023975          125 QYQAGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS--  201 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--  201 (274)
                      .+++|..++++|..|.  ..+ ..++++...+.        +...+.+.+++.||++++++.+.++..++....|++.  
T Consensus       322 ViG~G~~g~e~A~~L~--~~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~  391 (985)
T TIGR01372       322 VATNNDSAYRAAADLL--AAGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARN  391 (985)
T ss_pred             EECCCHHHHHHHHHHH--HcCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEec
Confidence            2344889999999988  456 45677766543        2345677888999999999999999765543334433  


Q ss_pred             --CCcEEeecEEEEcccCCCCchhhcccccccccCCC--CcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          202 --TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH--GMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 --~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                        ++++++||.|+++.|..|+.+++...++.+.+++.  +++.     .| +.++||++||+++....
T Consensus       392 ~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t-~v~gVyaaGD~~g~~~~  453 (985)
T TIGR01372       392 GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD-AVQGCILAGAANGLFGL  453 (985)
T ss_pred             CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC-CCCCeEEeeccCCccCH
Confidence              45689999999999999999998877765444432  2211     14 68999999999987644

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.87  E-value=4e-22  Score=176.01  Aligned_cols=237  Identities=17%  Similarity=0.205  Sum_probs=145.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      +.++|+||||||+||++|+.|+ .|++|+|+|+.+.+|+.+   ...+.+. +.........+++.  ++++.....+. 
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l---~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~-  384 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGML---TFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG-  384 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCee---eccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC-
Confidence            4689999999999999999997 599999999999887432   2111111 11110100111111  23332222111 


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH---------------------------------HHHHHccCCc
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT---------------------------------ERLNQYQAGP  130 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~---------------------------------~~~~~~~~g~  130 (274)
                        ..+..++ ....||.+++|+|+.+    .+|+.+.                                 +++..+++|.
T Consensus       385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~  461 (639)
T PRK12809        385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD  461 (639)
T ss_pred             --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence              1111211 2346899999999863    2232110                                 0111123377


Q ss_pred             hhhhHHHHhhhhCCC-CeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC---C--
Q 023975          131 TGVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT---S--  201 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~---~--  201 (274)
                      ++++.+..+.  ..+ .+|+++.+.+.. .+..    ...+ +.+++.||++++++.++++..++ +.+ .+.+   .  
T Consensus       462 ~a~d~a~~~~--~~Ga~~Vt~v~rr~~~~~~~~----~~e~-~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~  534 (639)
T PRK12809        462 TTMDCLRTSI--RLNAASVTCAYRRDEVSMPGS----RKEV-VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMG  534 (639)
T ss_pred             HHHHHHHHHH--HcCCCeEEEeeecCcccCCCC----HHHH-HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEec
Confidence            8889887655  345 489998876543 2221    2222 23567899999999998887443 322 1211   0  


Q ss_pred             ----CC-----------cEEeecEEEEcccCCCCc-hhhcccccccccCCCCcEEeCC----CccccCCCCeEEeccccC
Q 023975          202 ----TG-----------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       202 ----~g-----------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~~~v~~----~~~~~~~~~i~~~Gd~~~  261 (274)
                          +|           .++++|.||+|+|+.|+. .++...++  .++.+|.+.+|+    .++| +.|+|||+||++.
T Consensus       535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~  611 (639)
T PRK12809        535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGI--KLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVH  611 (639)
T ss_pred             CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCc--ccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCC
Confidence                12           268999999999998864 45554444  567789999985    3788 8999999999987


Q ss_pred             CCCC
Q 023975          262 IRVS  265 (274)
Q Consensus       262 ~~~~  265 (274)
                      .+..
T Consensus       612 g~~~  615 (639)
T PRK12809        612 GADL  615 (639)
T ss_pred             CchH
Confidence            6654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=9.3e-22  Score=153.21  Aligned_cols=237  Identities=22%  Similarity=0.285  Sum_probs=162.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEE-cCCCCceeeccce---eeecC------CccccceeeeccccccccEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLI-DPKEYFEITWASL---RAMVE------PSFGKRSVINHTDYLVNGRIV   80 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vi-e~~~~~g~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~   80 (274)
                      ..|||+||||||||.++|.+.+ +|.+.-++ ||   +|+..-..   ..++.      +.+....-.+..+|  .+++.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer---fGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y--~vDim  284 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER---FGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY--DVDVM  284 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh---hCCeeccccchhheeccccccchHHHHHHHHHHhhc--Cchhh
Confidence            3599999999999999997775 58876555 33   55332111   11111      11110000111111  11111


Q ss_pred             EE-eeEEEe-------cCeEEeCCCeEEecCEEEEccCCC---CCCCh-------------------hHHHHHHHccCCc
Q 023975           81 AS-PAINIT-------ENEVLTAEGRRVVYDYLVIATGHK---DPVPK-------------------TRTERLNQYQAGP  130 (274)
Q Consensus        81 ~~-~~~~~~-------~~~v~~~~~~~~~~~~li~a~G~~---~~~~~-------------------~~~~~~~~~~~g~  130 (274)
                      .. +...+.       -..+.+++|-.+..+.+|++||++   -.+|+                   +..+++..+++|+
T Consensus       285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGN  364 (520)
T COG3634         285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGN  364 (520)
T ss_pred             hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCc
Confidence            00 111111       117889999999999999999987   34454                   3356777788899


Q ss_pred             hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEEC---CCCc-
Q 023975          131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLT---STGD-  204 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~-  204 (274)
                      ++.|.|..|+  -.-.+|+++.-.+.+.      ....+.+++++ .++.+.+|.+.++|..+++.+ .+..   .+|+ 
T Consensus       365 SGvEAAIDLA--Giv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~  436 (520)
T COG3634         365 SGVEAAIDLA--GIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE  436 (520)
T ss_pred             chHHHHHhHH--hhhheeeeeecchhhh------hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence            9999999887  4456888887655432      44567777776 589999999999999886543 2332   2232 


Q ss_pred             -EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          205 -TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       205 -~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                       .++-+-|++-.|-.||++|++.. .  .+++.|-|.||....| +.|+|||+|||+..|..
T Consensus       437 ~~l~LeGvFVqIGL~PNT~WLkg~-v--el~~rGEIivD~~g~T-svpGvFAAGD~T~~~yK  494 (520)
T COG3634         437 HHLELEGVFVQIGLLPNTEWLKGA-V--ELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYK  494 (520)
T ss_pred             eEEEeeeeEEEEecccChhHhhch-h--hcCcCccEEEecCCCc-CCCceeecCcccCCccc
Confidence             67889999999999999999886 3  5778999999999999 89999999999987764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.3e-21  Score=143.38  Aligned_cols=238  Identities=19%  Similarity=0.239  Sum_probs=157.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec-cceeeecC----Ccccccee-------eeccccccccE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW-ASLRAMVE----PSFGKRSV-------INHTDYLVNGR   78 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~-~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~   78 (274)
                      .+.+|+|||+|||+-++|+++++ ..+.+|+|-.-.-+..+ +.+.....    +.|..-..       +.......+.+
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~   86 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE   86 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence            34699999999999999998875 88999999543222111 11211110    11110000       00000111345


Q ss_pred             EEEEeeEEEecC----eEEeCCCeEEecCEEEEccCCCC---CCChh-----------------------HHHHHHHccC
Q 023975           79 IVASPAINITEN----EVLTAEGRRVVYDYLVIATGHKD---PVPKT-----------------------RTERLNQYQA  128 (274)
Q Consensus        79 ~~~~~~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~---~~~~~-----------------------~~~~~~~~~~  128 (274)
                      ++...+..++..    .+.+ +.+.+.+|.+|+|||+..   .+|+.                       +++-+..+++
T Consensus        87 i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGG  165 (322)
T KOG0404|consen   87 IITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGG  165 (322)
T ss_pred             eeeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcC
Confidence            555555444422    4555 455789999999999873   23432                       1233344555


Q ss_pred             CchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHH-hCCcEEEcCceeeeeccCCC---ceeE---ECC
Q 023975          129 GPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEG---SDTY---LTS  201 (274)
Q Consensus       129 g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~---~~~v---~~~  201 (274)
                      |.+++|-|..|.  ..+.+|++++|.+.+.      .+..|.++.+ ..+|++++|+.+.+...++.   ++.+   .+.
T Consensus       166 GDsA~EEA~fLt--kyaskVyii~Rrd~fR------As~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tg  237 (322)
T KOG0404|consen  166 GDSAMEEALFLT--KYASKVYIIHRRDHFR------ASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTG  237 (322)
T ss_pred             cHHHHHHHHHHH--hhccEEEEEEEhhhhh------HHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccC
Confidence            899999999998  5688999999988754      4556666554 46899999999888776643   2222   233


Q ss_pred             CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCC
Q 023975          202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~  262 (274)
                      +-+.++.+-+++++|..|++.+++. ..  .+|.+|.+.+-+. ..| ++|++||+||+...
T Consensus       238 e~~dl~v~GlFf~IGH~Pat~~l~g-qv--e~d~~GYi~t~pgts~T-svpG~FAAGDVqD~  295 (322)
T KOG0404|consen  238 EETDLPVSGLFFAIGHSPATKFLKG-QV--ELDEDGYIVTRPGTSLT-SVPGVFAAGDVQDK  295 (322)
T ss_pred             cccccccceeEEEecCCchhhHhcC-ce--eeccCceEEeccCcccc-cccceeeccccchH
Confidence            3357999999999999999999987 33  6789999988755 445 89999999999753

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=158.21  Aligned_cols=247  Identities=25%  Similarity=0.350  Sum_probs=179.6

Q ss_pred             EEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeeccc--cccccEEEE-EeeEEEe
Q 023975           16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTD--YLVNGRIVA-SPAINIT   88 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~-~~~~~~~   88 (274)
                      ++|||+|++|+++|..|.   .+.+++++.+.+...+....+......... .........  ...++.+.. ..+..++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            589999999999998775   477888888877665444433332222111 000111000  112344433 2344444


Q ss_pred             --cCeEEeCCCeEEecCEEEEccCCCCCCCh-------------hHH----------HHHHHccCCchhhhHHHHhhhhC
Q 023975           89 --ENEVLTAEGRRVVYDYLVIATGHKDPVPK-------------TRT----------ERLNQYQAGPTGVELAGEIAVDF  143 (274)
Q Consensus        89 --~~~v~~~~~~~~~~~~li~a~G~~~~~~~-------------~~~----------~~~~~~~~g~~~~e~a~~l~~~~  143 (274)
                        .+.+.+.++ ++.||++++|||+.+..++             ...          +.+...++|..++++|..+.  .
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~--~  157 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA--K  157 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH--H
Confidence              457888888 8999999999999977652             001          12222445999999999998  6


Q ss_pred             CCCeEEEEeCCCccCCcCC-hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee---EECCCCcEEeecEEEEcccCCC
Q 023975          144 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .|.+++++...+++.+... +.+.+.+.+.+++.||+++++..+.+++...+...   +...++..+++|.+++++|..|
T Consensus       158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence            7899999999999888666 78999999999999999999999999987766443   5777888999999999999999


Q ss_pred             CchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          220 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +..+....+.. ....+|++.||+.+++...++||++|||+..+...
T Consensus       238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~  283 (415)
T COG0446         238 NVVLANDALPG-LALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAE  283 (415)
T ss_pred             cHHHHhhCccc-eeccCCCEEEccccccCCCCCEEeccceEeeeccc
Confidence            87766665422 25577899999999982389999999999877665

>PRK13984 putative oxidoreductase; Provisional

Probab=99.87  E-value=1.9e-21  Score=171.48  Aligned_cols=242  Identities=17%  Similarity=0.142  Sum_probs=144.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeecccccc--ccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYLV--NGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (274)
                      ...++|+|||+|++|+++|..|+ +|++|+|+|+.+.+++.+.   ..+... ..........+.+.  ++++.....+.
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~---~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  357 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR---YGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVG  357 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe---ecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence            34689999999999999999997 4999999999988764322   111110 00000000011111  23332222221


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCCC----CCChhH----------H-----------------HHHHHccCCchhhhH
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR----------T-----------------ERLNQYQAGPTGVEL  135 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~----------~-----------------~~~~~~~~g~~~~e~  135 (274)
                      .+   +..+. ....||++|+|+|+.+    .+|+..          .                 +++..+++|.+|+|+
T Consensus       358 ~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~  433 (604)
T PRK13984        358 KD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDI  433 (604)
T ss_pred             Cc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHH
Confidence            11   11111 1357999999999752    333321          0                 122334458999999


Q ss_pred             HHHhhhhC----CCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--------C-
Q 023975          136 AGEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S-  201 (274)
Q Consensus       136 a~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~-  201 (274)
                      |..+....    ...+++++..... ...++. ....+.+ +.+.||+++++..+.++..+++.+ .+++        . 
T Consensus       434 A~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~-~~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~  510 (604)
T PRK13984        434 ARSMARLQKMEYGEVNVKVTSLERT-FEEMPA-DMEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEE  510 (604)
T ss_pred             HHHHHhccccccCceEEEEeccccC-cccCCC-CHHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCC
Confidence            99887321    1236776532211 111111 1223333 346899999998887776444332 2221        1 


Q ss_pred             ----------CCcEEeecEEEEcccCCCCchhhccc-ccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          202 ----------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       202 ----------~g~~~~~d~vv~a~G~~~~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                                +.+++++|.||+|+|+.|+..++... +..+.. ++|++.||++++| +.|+|||+|||+..+.
T Consensus       511 G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~  582 (604)
T PRK13984        511 GRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD  582 (604)
T ss_pred             CCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH
Confidence                      12379999999999999998877542 222233 4688999999998 8999999999997664

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.87  E-value=6.2e-22  Score=169.43  Aligned_cols=243  Identities=18%  Similarity=0.183  Sum_probs=141.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      ..++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+..   ...+.. ...........+++.  ++++.....+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l---~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL---MYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee---eccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence            3479999999999999999997 599999999998776321   111110 000011111111111  344433222211


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhHH--------------------------------HHHHHccCCch
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTRT--------------------------------ERLNQYQAGPT  131 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~~--------------------------------~~~~~~~~g~~  131 (274)
                      +   +.. +.....||.+++|||+. |.   +|+.+.                                +++..+++|++
T Consensus       219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~  294 (485)
T TIGR01317       219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT  294 (485)
T ss_pred             c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence            1   111 11235799999999987 43   332110                                01112344889


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCCcCC-----hh------HHHHHHHHHHhCCcEE-EcCceeeeeccCC-Cce-e
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GSD-T  197 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gv~i-~~~~~v~~i~~~~-~~~-~  197 (274)
                      ++|+|..+.. .....++++...+.......     +.      ....+.+..+..|+.+ ..+..+.++..++ +.+ .
T Consensus       295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~  373 (485)
T TIGR01317       295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA  373 (485)
T ss_pred             HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence            9998766552 34468998887665432110     11      1122333344456544 3466666665432 222 2


Q ss_pred             EEC--------CCC-----------cEEeecEEEEcccCC-CCchhhcccccccccCCCCcEEe-CCCccccCCCCeEEe
Q 023975          198 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAI  256 (274)
Q Consensus       198 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~i~~~  256 (274)
                      +.+        ++|           .++++|.||+|+|.. |+..++...++  .++.+|++.+ |+.++| +.++||++
T Consensus       374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa  450 (485)
T TIGR01317       374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA  450 (485)
T ss_pred             EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence            221        122           279999999999985 77788776655  4567788855 567888 89999999


Q ss_pred             ccccCCCCC
Q 023975          257 GDITDIRVS  265 (274)
Q Consensus       257 Gd~~~~~~~  265 (274)
                      |||+..+..
T Consensus       451 GD~~~g~~~  459 (485)
T TIGR01317       451 GDCRRGQSL  459 (485)
T ss_pred             eccCCCcHH
Confidence            999876544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.85  E-value=1.6e-20  Score=158.67  Aligned_cols=245  Identities=15%  Similarity=0.109  Sum_probs=142.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccccce--eeecccccc--ccEEEEEe
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRS--VINHTDYLV--NGRIVASP   83 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~   83 (274)
                      ...++|+||||||||++||..|+   +|++|+|||+.+.+|+   .++....+.+....  ...+..++.  ++++....
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv  100 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNV  100 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCE
Confidence            34579999999999999999985   4999999999998873   33333322221100  001111111  23333222


Q ss_pred             eEEEecCeEEeCCCeEEecCEEEEccCCCC----CCChhHH-----------------------------HHHHHccCCc
Q 023975           84 AINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-----------------------------ERLNQYQAGP  130 (274)
Q Consensus        84 ~~~~~~~~v~~~~~~~~~~~~li~a~G~~~----~~~~~~~-----------------------------~~~~~~~~g~  130 (274)
                        .+. ..+..++. ...||++|+|+|+.+    .+|+.+.                             +++-.+++|+
T Consensus       101 --~vg-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGn  176 (491)
T PLN02852        101 --TLG-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGN  176 (491)
T ss_pred             --EEC-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCH
Confidence              222 12333333 347999999999863    2444210                             1112234499


Q ss_pred             hhhhHHHHhhhh------------------C-CCCeEEEEeCCCccCCcCC------------------h-h--------
Q 023975          131 TGVELAGEIAVD------------------F-PEKKVTLVHKGSRLLEFIG------------------P-K--------  164 (274)
Q Consensus       131 ~~~e~a~~l~~~------------------~-~~~~v~~~~~~~~~~~~~~------------------~-~--------  164 (274)
                      .++|+|..+...                  . .-.+|+++.|....-..+.                  + +        
T Consensus       177 vAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~  256 (491)
T PLN02852        177 VALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDE  256 (491)
T ss_pred             HHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchh
Confidence            999999887621                  1 2247888887653100000                  0 0        


Q ss_pred             -----------HHHHHHHHHHh---------CCcEEEcCceeeeeccC--C-Cce-eEECC-----------------CC
Q 023975          165 -----------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GSD-TYLTS-----------------TG  203 (274)
Q Consensus       165 -----------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~-~~~-~v~~~-----------------~g  203 (274)
                                 ..+.+.+...+         .++.+++.....+|...  + +.+ .+++.                 +|
T Consensus       257 ~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tg  336 (491)
T PLN02852        257 EELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTG  336 (491)
T ss_pred             hhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCC
Confidence                       11222222222         47888888888888632  1 222 22211                 23


Q ss_pred             c--EEeecEEEEcccCC--CCchh-hcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          204 D--TINADCHFLCTGKP--VGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       204 ~--~~~~d~vv~a~G~~--~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +  +++||.||.+.|+.  |...+ +.. ..++..+.+|++.+|..++| +.|+||++|||...|.
T Consensus       337 e~~~i~~D~Vi~aIG~~~~p~~~l~f~~-~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~  400 (491)
T PLN02852        337 EFEDLPCGLVLKSIGYKSLPVDGLPFDH-KRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT  400 (491)
T ss_pred             CEEEEECCEEEEeecCCCCCCCCCcccc-CcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence            2  68999999999997  44432 221 11224567899999988887 7999999999987554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.85  E-value=7.3e-21  Score=161.16  Aligned_cols=232  Identities=17%  Similarity=0.246  Sum_probs=138.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee------------------c-------C------
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------V-------E------   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~------------------~-------~------   59 (274)
                      ..++|+|||||++||+||++|+ .|++|+|+|+++.+|+.|......                  .       .      
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            3589999999999999999997 599999999999999888432100                  0       0      


Q ss_pred             Ccccc-----------ceeeecc---cccc------ccE--E-EEEeeEEEec--C--eEEeCCC----eEEecCEEEEc
Q 023975           60 PSFGK-----------RSVINHT---DYLV------NGR--I-VASPAINITE--N--EVLTAEG----RRVVYDYLVIA  108 (274)
Q Consensus        60 ~~~~~-----------~~~~~~~---~~~~------~~~--~-~~~~~~~~~~--~--~v~~~~~----~~~~~~~li~a  108 (274)
                      ..+..           ..+....   +++.      ++.  + ....+..+..  .  .|.+.++    .+..||+||+|
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvA  168 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVC  168 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEe
Confidence            00000           0000100   1111      111  1 2233444432  2  3444322    24579999999


Q ss_pred             cCC--CCCCChhH----------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChh
Q 023975          109 TGH--KDPVPKTR----------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPK  164 (274)
Q Consensus       109 ~G~--~~~~~~~~----------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~  164 (274)
                      +|.  .|.+|.++                      .+++..+++|.+|+|+|.+|.  ..+++|+++.+...+..     
T Consensus       169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~--~~a~~V~l~~r~~~~~~-----  241 (461)
T PLN02172        169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIA--KVAKEVHIASRASESDT-----  241 (461)
T ss_pred             ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHH--HhCCeEEEEEeeccccc-----
Confidence            994  46555422                      122333455999999999998  55789999988653211     


Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN  244 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~  244 (274)
                           ...+......+..+..|..+..++   .|++.||+.+++|.||+|||+.++.+|+...+. +..+.+.-..+..+
T Consensus       242 -----~~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~Ly~~  312 (461)
T PLN02172        242 -----YEKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPLYKH  312 (461)
T ss_pred             -----cccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhhHHh
Confidence                 011111233455566666554322   488899999999999999999999999875332 12222221123333


Q ss_pred             ccccC-CCCeEEeccc
Q 023975          245 LRVKG-QKNIFAIGDI  259 (274)
Q Consensus       245 ~~~~~-~~~i~~~Gd~  259 (274)
                      .-.+. .|+++.+|=.
T Consensus       313 ~f~~~~~p~LafiG~~  328 (461)
T PLN02172        313 VFPPALAPGLSFIGLP  328 (461)
T ss_pred             hcCCCCCCcEEEEecc
Confidence            22223 4899999965

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.85  E-value=7.1e-21  Score=166.29  Aligned_cols=238  Identities=18%  Similarity=0.221  Sum_probs=143.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccceeeeccccc--cccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSVINHTDYL--VNGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (274)
                      ...++|+|||+||+||++|+.|+ .|++|+++|+.+.+|+.+.   ..+... +..+......+..  .++++.......
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~---~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR---YGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee---ecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            34689999999999999999997 5999999999998875332   111100 0000000000111  122322221110


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCCCC----CChhH-------H---------------HHHHHccCCchhhhHHHHhh
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------T---------------ERLNQYQAGPTGVELAGEIA  140 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~~~----~~~~~-------~---------------~~~~~~~~g~~~~e~a~~l~  140 (274)
                      .+   +..+ .....||.+++|+|....    ++...       .               +++..+++|.++++.+..+.
T Consensus       212 ~~---~~~~-~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~  287 (564)
T PRK12771        212 ED---ITLE-QLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTAR  287 (564)
T ss_pred             Cc---CCHH-HHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHH
Confidence            00   0000 012358999999998632    22210       0               11122334778888887655


Q ss_pred             hhCCCCeEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-e-----EEC----CC-------
Q 023975          141 VDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-----YLT----ST-------  202 (274)
Q Consensus       141 ~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-----v~~----~~-------  202 (274)
                      + .....++++.+.+.. .+.    ....+. .+.+.|++++++..+.++..++++. .     +..    .+       
T Consensus       288 ~-lga~~v~ii~r~~~~~~~~----~~~~~~-~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~  361 (564)
T PRK12771        288 R-LGAEEVTIVYRRTREDMPA----HDEEIE-EALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVT  361 (564)
T ss_pred             H-cCCCEEEEEEecCcccCCC----CHHHHH-HHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecC
Confidence            2 333678888776531 111    222333 3456899999999999987654332 1     221    12       


Q ss_pred             C--cEEeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCC
Q 023975          203 G--DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       203 g--~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |  .++++|.||+|+|..|+..++.. .++  . +++|++.+|. .++| +.++||++|||+..+..
T Consensus       362 g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~~~  424 (564)
T PRK12771        362 GEEETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGPRT  424 (564)
T ss_pred             CceEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCchH
Confidence            2  37999999999999998888774 444  3 5789999998 5666 89999999999875543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.83  E-value=4.4e-20  Score=142.32  Aligned_cols=250  Identities=19%  Similarity=0.258  Sum_probs=153.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeec--cceeeecCCccccceeeeccccc-cccEEEEEee
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITW--ASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPA   84 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (274)
                      ..+++|+|||||.+|++.|..+.+   .-+|.|+|..+.-.+.+  ......+...  ........+.. .+..+++..+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l--~~srr~~a~liP~~a~wi~ekv  114 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSL--DSSRRKQASLIPKGATWIKEKV  114 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhh--hhccCcccccccCCcHHHHHHH
Confidence            357899999999999999988862   45899999877533222  2111111100  00000111111 1223333444


Q ss_pred             EEEe--cCeEEeCCCeEEecCEEEEccCCCC---CCChhH--------------------HHHHHHccCCc-------hh
Q 023975           85 INIT--ENEVLTAEGRRVVYDYLVIATGHKD---PVPKTR--------------------TERLNQYQAGP-------TG  132 (274)
Q Consensus        85 ~~~~--~~~v~~~~~~~~~~~~li~a~G~~~---~~~~~~--------------------~~~~~~~~~g~-------~~  132 (274)
                      ..++  ++.+.+.+|+++.||++|+|+|.+-   .++++.                    .+.++.+..|+       ..
T Consensus       115 ~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntp  194 (446)
T KOG3851|consen  115 KEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTP  194 (446)
T ss_pred             HhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCc
Confidence            4444  4489999999999999999999872   223211                    12223332211       11


Q ss_pred             hhHH----------HHhhhh---CCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE
Q 023975          133 VELA----------GEIAVD---FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL  199 (274)
Q Consensus       133 ~e~a----------~~l~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~  199 (274)
                      +.+|          ....++   +.++++.....-+.++  .-....+.+.+..++++|++.+...+.++..++.....+
T Consensus       195 iKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe  272 (446)
T KOG3851|consen  195 IKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE  272 (446)
T ss_pred             cccCCCchhhhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH
Confidence            1111          111111   1122333332222222  123467888888899999999999998887665543333


Q ss_pred             C-CC-C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCCCCCCC
Q 023975          200 T-ST-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       200 ~-~~-g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      . .+ |  ++++++.+-+.+...+ ++++....+   .|..|++.||.. +|+..+||||++|||.+.|+.++.
T Consensus       273 ~L~kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTa  342 (446)
T KOG3851|consen  273 NLDKPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTA  342 (446)
T ss_pred             hcCCCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhH
Confidence            1 22 4  3788999888877665 677776665   678999999954 888899999999999999999764

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.82  E-value=3.6e-19  Score=141.99  Aligned_cols=250  Identities=19%  Similarity=0.272  Sum_probs=173.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceee----ecCCcc-----------c-cceeeeccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRA----MVEPSF-----------G-KRSVINHTD   72 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~----~~~~~~-----------~-~~~~~~~~~   72 (274)
                      ++...+|||+|-+..+++...+   .+.+|++|...+.+-+....+..    .-++..           . ...+++-..
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~  256 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG  256 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence            4678999999999888888775   48899999766654322111111    101110           0 011111111


Q ss_pred             cc-----------cccEEEEE-eeEEEe--cCeEEeCCCeEEecCEEEEccCCCCCCChh-------------------H
Q 023975           73 YL-----------VNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT-------------------R  119 (274)
Q Consensus        73 ~~-----------~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~-------------------~  119 (274)
                      |+           .++.++.+ .++.++  .+.|.+++|.++.||.+++|||..|.....                   +
T Consensus       257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D  336 (659)
T KOG1346|consen  257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD  336 (659)
T ss_pred             ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence            11           12333333 233444  448999999999999999999998753320                   1


Q ss_pred             HHHH----------HHccCCchhhhHHHHhhhhCC--CCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          120 TERL----------NQYQAGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       120 ~~~~----------~~~~~g~~~~e~a~~l~~~~~--~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                      .+++          ..+++|..+.|++..|.+++.  +.+|+-+........ -.+.-++++-.+++++.||.++.|..|
T Consensus       337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v  416 (659)
T KOG1346|consen  337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKV  416 (659)
T ss_pred             HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence            1222          224458999999998886554  446665554433222 223457788889999999999999999


Q ss_pred             eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCC-CcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .++......+.+.++||.++..|.||+|+|..||.++....++.  +|++ |+++||.-++.  -.|||++||++-....
T Consensus       417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe--iD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~  492 (659)
T KOG1346|consen  417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE--IDEKLGGFRVNAELKA--RENVWVAGDAACFEDG  492 (659)
T ss_pred             hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccce--eecccCcEEeeheeec--ccceeeecchhhhhcc
Confidence            99998888899999999999999999999999999999988885  4443 78999999986  8999999999855544

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.80  E-value=2.3e-19  Score=134.61  Aligned_cols=247  Identities=20%  Similarity=0.283  Sum_probs=149.2

Q ss_pred             cEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceee--ccceeeecC-Ccccc----ceeeeccccccccEEEEEee
Q 023975           15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT--WASLRAMVE-PSFGK----RSVINHTDYLVNGRIVASPA   84 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~--~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~   84 (274)
                      +.+|||||+||.+||..|+   +..+++++..++..-..  +.....++. ....+    .....++.+...+.     .
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~-----~   75 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVV-----T   75 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhh-----h
Confidence            3689999999999998886   58899999987754210  000101100 00001    11111111111110     1


Q ss_pred             EEEecCeEEeCCCeEEecCEEEEccCCCCCCChh------------H-----------HHHHHHccCCchhhhHHHHhhh
Q 023975           85 INITENEVLTAEGRRVVYDYLVIATGHKDPVPKT------------R-----------TERLNQYQAGPTGVELAGEIAV  141 (274)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~------------~-----------~~~~~~~~~g~~~~e~a~~l~~  141 (274)
                      ++-..+-+.+.+|..+-|++|++++|..|...-.            +           .+.+..++.|.+++|+..++. 
T Consensus        76 ~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk-  154 (334)
T KOG2755|consen   76 WDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK-  154 (334)
T ss_pred             hccccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh-
Confidence            1222346888899999999999999999754221            0           122233444888888888875 


Q ss_pred             hCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhC------------CcEEEcCce-----------------------
Q 023975          142 DFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISK------------KVDVKLGER-----------------------  185 (274)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------gv~i~~~~~-----------------------  185 (274)
                         ..+|+|....+.+.. .++++..+.+...+...            .++.+.+++                       
T Consensus       155 ---~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~e  231 (334)
T KOG2755|consen  155 ---ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISE  231 (334)
T ss_pred             ---cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchh
Confidence               678888887776644 34455444443333100            111111110                       


Q ss_pred             ------------eeeeccCCCceeEEC---CCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCcccc
Q 023975          186 ------------VNLDSVSEGSDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK  248 (274)
Q Consensus       186 ------------v~~i~~~~~~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  248 (274)
                                  +..+....+...+..   ..+  ..+.||.+|.|+|..|+.+++-...+  ...++|++.||..|++ 
T Consensus       232 seer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-  308 (334)
T KOG2755|consen  232 SENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-  308 (334)
T ss_pred             hhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-
Confidence                        000000001111111   111  26889999999999999997766555  5678999999999999 


Q ss_pred             CCCCeEEeccccCCCCCCCCCCCCC
Q 023975          249 GQKNIFAIGDITDIRVSASMIFPQV  273 (274)
Q Consensus       249 ~~~~i~~~Gd~~~~~~~~~~~~~~~  273 (274)
                      +.|++|++||++......+..|.|+
T Consensus       309 slpdvFa~gDvctt~~~~s~~wqQm  333 (334)
T KOG2755|consen  309 SLPDVFAAGDVCTTTWEPSTLWQQM  333 (334)
T ss_pred             cccceeeecceeccCCCCchhhhcc
Confidence            8999999999999888888888886

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.77  E-value=5.6e-18  Score=145.52  Aligned_cols=39  Identities=36%  Similarity=0.493  Sum_probs=33.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      ++|+|||||++||++|+.|. .|++++++||++.+|+.|.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            68999999999999999987 5999999999999999985

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.74  E-value=2e-16  Score=126.53  Aligned_cols=253  Identities=18%  Similarity=0.176  Sum_probs=161.9

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCceeeccceee--------------ecCCcc-----------
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRA--------------MVEPSF-----------   62 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~g~~~~~~~~--------------~~~~~~-----------   62 (274)
                      +...+|++.||-||+-|+.|..|+.  +.+++.+||.+.+.+.++.+-.              +.++..           
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h   81 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH   81 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence            3456899999999999999999973  7899999999987655443311              000000           


Q ss_pred             --------ccceeeeccc----------cccccEE----EEEeeEEEecC---eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           63 --------GKRSVINHTD----------YLVNGRI----VASPAINITEN---EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        63 --------~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~---~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                              .+.......+          .+...++    .....+..+..   .+.+.++..++++.+|+++|..|.+|+
T Consensus        82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~  161 (436)
T COG3486          82 GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP  161 (436)
T ss_pred             chHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence                    0000000000          0111111    11111111111   356667779999999999999999987


Q ss_pred             hH----------------------HH-HHHHccCCchhhhHHHHhhhhCCCC--eEEEEeCCCccCCcC---------Ch
Q 023975          118 TR----------------------TE-RLNQYQAGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFI---------GP  163 (274)
Q Consensus       118 ~~----------------------~~-~~~~~~~g~~~~e~a~~l~~~~~~~--~v~~~~~~~~~~~~~---------~~  163 (274)
                      .-                      .+ .+..+++|++|.|+...|....+..  ++.|+.|+..+.|..         .|
T Consensus       162 ~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P  241 (436)
T COG3486         162 CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSP  241 (436)
T ss_pred             HHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCc
Confidence            21                      11 1445667999999999887555544  488899988775521         22


Q ss_pred             hHHHH------------------------------HHHHH-------HhCCcEEEcCceeeeeccCCCc-eeEECC----
Q 023975          164 KAGDK------------------------------TRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLTS----  201 (274)
Q Consensus       164 ~~~~~------------------------------~~~~~-------~~~gv~i~~~~~v~~i~~~~~~-~~v~~~----  201 (274)
                      +.++.                              +.+.+       .+..+.+..+++|..++..+++ +.+.+.    
T Consensus       242 ~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~  321 (436)
T COG3486         242 EYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHET  321 (436)
T ss_pred             hhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccC
Confidence            22211                              11111       1346889999999999988865 555432    


Q ss_pred             -CCcEEeecEEEEcccCCCC-chhhcccccccccCCCCcEEeCCCccccC----CCCeEEeccccCC
Q 023975          202 -TGDTINADCHFLCTGKPVG-SDWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDI  262 (274)
Q Consensus       202 -~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~i~~~Gd~~~~  262 (274)
                       +.++++.|.||+|||+... +.|+....-.+.++++|.+.|++++....    .-.||+.|-+...
T Consensus       322 ~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht  388 (436)
T COG3486         322 GELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT  388 (436)
T ss_pred             CCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence             2348899999999999744 45777765455788999999999877632    2369999877543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.73  E-value=2.3e-19  Score=137.13  Aligned_cols=34  Identities=38%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ||+|||||+||++||.+|+ ++++++++|+.+...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~   35 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTP   35 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence            7999999999999999998 599999999987543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.71  E-value=6.4e-16  Score=123.88  Aligned_cols=162  Identities=21%  Similarity=0.156  Sum_probs=100.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecCe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENE   91 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (274)
                      .+||+|||||||||.||..+++ |++|+|||+.+.+|-.                                         
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrK-----------------------------------------   41 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRK-----------------------------------------   41 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccce-----------------------------------------
Confidence            4799999999999999999975 9999999999988711                                         


Q ss_pred             EEeCCCeEEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC--cCChhHHHHH
Q 023975           92 VLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKT  169 (274)
Q Consensus        92 v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~  169 (274)
                      +..+.|.+.++-......-....+|+ ....+......++.-++-..+.  ..+..... ....+.+|  .-...+.+.+
T Consensus        42 il~sGgGrCN~Tn~~~~~~~ls~~p~-~~~fl~sal~~ft~~d~i~~~e--~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~l  117 (408)
T COG2081          42 ILMSGGGRCNFTNSEAPDEFLSRNPG-NGHFLKSALARFTPEDFIDWVE--GLGIALKE-EDLGRMFPDSDKASPIVDAL  117 (408)
T ss_pred             eEecCCCCccccccccHHHHHHhCCC-cchHHHHHHHhCCHHHHHHHHH--hcCCeeEE-ccCceecCCccchHHHHHHH
Confidence            11111111111000000000001111 0111221111222233333332  23333322 12233344  2334688999


Q ss_pred             HHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc--CCC
Q 023975          170 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPV  219 (274)
Q Consensus       170 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~  219 (274)
                      ...+++.||+++++++|.+++.++....+.+++|+++.||.+|+|+|  ..|
T Consensus       118 l~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P  169 (408)
T COG2081         118 LKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP  169 (408)
T ss_pred             HHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence            99999999999999999999988888999999999999999999999  455

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.68  E-value=8.2e-16  Score=125.20  Aligned_cols=132  Identities=21%  Similarity=0.203  Sum_probs=84.0

Q ss_pred             hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC---C--cE
Q 023975          131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---G--DT  205 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~  205 (274)
                      .++..|..+.+++|..+++++.-+-+-.   +...-+.+.+.-++.||++..+..-.-.+..++...|+.+|   |  .+
T Consensus       386 ~slKqA~~Ike~~Pd~~v~I~YmDiRaf---G~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e  462 (622)
T COG1148         386 VSLKQAQLIKERYPDTDVTIYYMDIRAF---GKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKE  462 (622)
T ss_pred             HHHhhhhhhhhcCCCcceeEEEEEeecc---CccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEEEEEeccCcccee
Confidence            4456667777778888888776554322   22233344444447899998876443333344444665444   3  37


Q ss_pred             EeecEEEEcccCCCCc--hhhcccccccccCCCCcEEeC-CCccc--cCCCCeEEeccccCCCCCC
Q 023975          206 INADCHFLCTGKPVGS--DWLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       206 ~~~d~vv~a~G~~~~~--~~~~~~~~~~~~~~~g~~~v~-~~~~~--~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +++|.||+++|..|..  +-+. ..+++..+++|++.-. +.++.  .+.++||.+|-+.++-..+
T Consensus       463 ~~~DLVVLa~Gmep~~g~~kia-~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~  527 (622)
T COG1148         463 IEADLVVLATGMEPSEGAKKIA-KILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIA  527 (622)
T ss_pred             cccceEEEeeccccCcchHHHH-HhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHH
Confidence            8999999999988742  2221 2344578889998765 44443  2679999999998876654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.64  E-value=4.7e-16  Score=126.98  Aligned_cols=205  Identities=20%  Similarity=0.206  Sum_probs=108.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCceeeccceeee--cC------------Cc--ccc----------
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYFEITWASLRAM--VE------------PS--FGK----------   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~g~~~~~~~~~--~~------------~~--~~~----------   64 (274)
                      .+|+++||.||++|+.|..|..  ..+++++|+.+.+...++.+...  ++            +.  +..          
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            3799999999999999999973  68999999998876444332110  00            00  000          


Q ss_pred             ------c-e---eeec-------cccccc-cEEEEEeeEEEe----c----CeEEeC----CCeEEecCEEEEccCCCCC
Q 023975           65 ------R-S---VINH-------TDYLVN-GRIVASPAINIT----E----NEVLTA----EGRRVVYDYLVIATGHKDP  114 (274)
Q Consensus        65 ------~-~---~~~~-------~~~~~~-~~~~~~~~~~~~----~----~~v~~~----~~~~~~~~~li~a~G~~~~  114 (274)
                            . .   ..++       .+.+.+ +.+ ...+..+.    .    -.|.+.    ++..+.++.||+|+|..|.
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~-~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~  160 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRY-GSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR  160 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEE-SEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE-
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEE-CCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC
Confidence                  0 0   0000       011122 222 22222222    1    144442    4568899999999999888


Q ss_pred             CChhH------------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC---------
Q 023975          115 VPKTR------------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI---------  161 (274)
Q Consensus       115 ~~~~~------------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~---------  161 (274)
                      +|..-                        .+++..+++|.+|.|++..|....+..+++++.|++.+.+..         
T Consensus       161 iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f  240 (341)
T PF13434_consen  161 IPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIF  240 (341)
T ss_dssp             --GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGG
T ss_pred             CCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhc
Confidence            87621                        112233566999999999998766667999999988763321         


Q ss_pred             C-------------------------------hhHHHHHHHH-----H-HhCCcEEEcCceeeeeccCC-CceeEECCC-
Q 023975          162 G-------------------------------PKAGDKTRDW-----L-ISKKVDVKLGERVNLDSVSE-GSDTYLTST-  202 (274)
Q Consensus       162 ~-------------------------------~~~~~~~~~~-----~-~~~gv~i~~~~~v~~i~~~~-~~~~v~~~~-  202 (274)
                      .                               +++.+.+.+.     + .+..+.++.+++|+.++..+ +.+.+.+.+ 
T Consensus       241 ~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~  320 (341)
T PF13434_consen  241 SPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHR  320 (341)
T ss_dssp             SHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEET
T ss_pred             CchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEEC
Confidence            1                               1222222222     2 22357899999999998887 477776654 


Q ss_pred             --C--cEEeecEEEEcccCC
Q 023975          203 --G--DTINADCHFLCTGKP  218 (274)
Q Consensus       203 --g--~~~~~d~vv~a~G~~  218 (274)
                        +  .++++|.||+|||+.
T Consensus       321 ~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  321 QTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             TT--EEEEEESEEEE---EE
T ss_pred             CCCCeEEEecCEEEEcCCcc
Confidence              2  478999999999985

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.60  E-value=1.7e-15  Score=127.18  Aligned_cols=245  Identities=22%  Similarity=0.116  Sum_probs=145.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCcccc-ceeeecccccc--ccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      +.++|+||||||+||++|..|++ |++|+++|+.+..|   +.+.+-+...... +......+++.  +++|.....+..
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G---Gll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~  198 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG---GLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR  198 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc---eeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence            34899999999999999999984 99999999999988   3333332222111 11111222222  244433333322


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCC-CC---CChhH---------------H----------------HHHHHccCCchh
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR---------------T----------------ERLNQYQAGPTG  132 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~-~~---~~~~~---------------~----------------~~~~~~~~g~~~  132 (274)
                      +   ++.+.- .-.||++++++|.. |.   +|+.+               .                +++..+++|.++
T Consensus       199 ~---it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta  274 (457)
T COG0493         199 D---ITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTA  274 (457)
T ss_pred             c---CCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCH
Confidence            1   222111 23569999999976 22   23211               0                222234448999


Q ss_pred             hhHHHHhhhhCCCC-eEEEEeCCCccCC-c-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Ccee-E---E--CC-
Q 023975          133 VELAGEIAVDFPEK-KVTLVHKGSRLLE-F-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDT-Y---L--TS-  201 (274)
Q Consensus       133 ~e~a~~l~~~~~~~-~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v---~--~~-  201 (274)
                      +|++....  ..++ .++.+.+...--. . ....-.....+.+...|+.........++..++ +.+. +   .  .. 
T Consensus       275 ~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~  352 (457)
T COG0493         275 MDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGE  352 (457)
T ss_pred             HHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccC
Confidence            99997665  5565 6665542211100 0 011123445566777888888777777776533 2221 1   1  10 


Q ss_pred             -------------CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCc-cccCCCCeEEeccccCCCCC
Q 023975          202 -------------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 -------------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~i~~~Gd~~~~~~~  265 (274)
                                   .|  ..+.+|.|+.|.|+.+...........+..+..|.+.++... +| +.+++|+.||+......
T Consensus       353 ~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g~~~  431 (457)
T COG0493         353 YVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRGAAL  431 (457)
T ss_pred             cccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccchhh
Confidence                         12  267899999999988764432222223356788999999998 77 89999999999875444


Q ss_pred             C
Q 023975          266 A  266 (274)
Q Consensus       266 ~  266 (274)
                      .
T Consensus       432 v  432 (457)
T COG0493         432 V  432 (457)
T ss_pred             h
Confidence            3

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.59  E-value=8e-14  Score=118.03  Aligned_cols=147  Identities=24%  Similarity=0.324  Sum_probs=94.5

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhhc-CCc-EEEEcCCCCceeeccceee-----ecCCccccc---------eeeecc-
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRA-----MVEPSFGKR---------SVINHT-   71 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~g~~~~~~~~-----~~~~~~~~~---------~~~~~~-   71 (274)
                      +...++||+|||||++||++|++|++ |.+ ++|+||++.+|+.|...++     ........-         .+..+. 
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            34457899999999999999999974 887 9999999999988654221     111110000         000000 


Q ss_pred             --c----ccc------ccEEE-EEeeEEEecC----eEEeCCCeE--EecCEEEEccCCC--CCCChh------------
Q 023975           72 --D----YLV------NGRIV-ASPAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKT------------  118 (274)
Q Consensus        72 --~----~~~------~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~li~a~G~~--~~~~~~------------  118 (274)
                        +    ++.      .+.+. .......+.+    .|.++++..  +.++.||+|||..  |.+|.+            
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H  163 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH  163 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence              0    000      11211 1122333322    566766655  4599999999975  555552            


Q ss_pred             ----------HHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc
Q 023975          119 ----------RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL  157 (274)
Q Consensus       119 ----------~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~  157 (274)
                                ..+++..++.|.||++++.++.  ..+++|+++.|++..
T Consensus       164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~--~~ga~vt~~qRs~~~  210 (443)
T COG2072         164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELA--EVGASVTLSQRSPPH  210 (443)
T ss_pred             hhcCCCccccCCCeEEEECCCccHHHHHHHHH--hcCCeeEEEecCCCc
Confidence                      2455666777999999999998  456999999988754

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.56  E-value=5.1e-14  Score=117.79  Aligned_cols=43  Identities=28%  Similarity=0.390  Sum_probs=38.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL   54 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~   54 (274)
                      +.++|+|||||+|||++|++|. .|++++++||.+.+|+.|.-.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            3579999999999999999997 599999999999999888543

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.53  E-value=4.1e-13  Score=112.33  Aligned_cols=136  Identities=15%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             CchhhhHH-HHhhh--hCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeE-ECCCCc
Q 023975          129 GPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTGD  204 (274)
Q Consensus       129 g~~~~e~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g~  204 (274)
                      +..|+|.+ ..+..  ...+.+++.+...+..++..  .+.+.+.+.+++.|++++.+++|.+++.+++.+.+ ...+|+
T Consensus       224 avIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~  301 (422)
T PRK05329        224 AVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG  301 (422)
T ss_pred             ceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc
Confidence            66777877 33321  24688999988877766643  58888999999999999999999999876665543 344443


Q ss_pred             --EEeecEEEEcccCCCCchhh------cc--cccccccCC-----------------CCcEEeCCCccc------cCCC
Q 023975          205 --TINADCHFLCTGKPVGSDWL------KD--TILKDSLDT-----------------HGMLMVDENLRV------KGQK  251 (274)
Q Consensus       205 --~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~~~~-----------------~g~~~v~~~~~~------~~~~  251 (274)
                        .+.+|.||+|+|..+...+.      .+  .++++...+                 .-++.+|+.++.      +..+
T Consensus       302 ~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~~  381 (422)
T PRK05329        302 DIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVIE  381 (422)
T ss_pred             eEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeecc
Confidence              58999999999976543331      11  112111000                 113667766664      1479


Q ss_pred             CeEEeccccCCCCCC
Q 023975          252 NIFAIGDITDIRVSA  266 (274)
Q Consensus       252 ~i~~~Gd~~~~~~~~  266 (274)
                      |+|++|++.+.+++.
T Consensus       382 nl~a~G~vl~g~d~~  396 (422)
T PRK05329        382 NLYAAGAVLGGYDPI  396 (422)
T ss_pred             ceEEeeehhcCCchH
Confidence            999999998877664

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.53  E-value=1.1e-14  Score=128.65  Aligned_cols=94  Identities=28%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecC-Cccccceeeeccccc--cccEEEEEeeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      +.++|+|||+||+||+||-.|.+ ||.|+|+||.+..|   +.+.+.+. ...+........+++  ++++|+....+.-
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g---gll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG---GLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK 1860 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC---ceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc
Confidence            35899999999999999999976 99999999999998   44433322 111111111222222  2445543332221


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCC
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHK  112 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~  112 (274)
                        + +.. ++..-.+|.+|+|+|+.
T Consensus      1861 --~-vs~-d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1861 --H-VSL-DELKKENDAIVLATGST 1881 (2142)
T ss_pred             --c-ccH-HHHhhccCeEEEEeCCC
Confidence              1 222 22234679999999986

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.53  E-value=1.1e-13  Score=123.70  Aligned_cols=36  Identities=31%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ...++|+|||||||||+||++|+ +|++|+++|+.+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i  417 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI  417 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence            35689999999999999999997 5999999998754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.50  E-value=1.8e-13  Score=114.12  Aligned_cols=162  Identities=18%  Similarity=0.193  Sum_probs=82.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecCeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEV   92 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   92 (274)
                      |||+|||||+|||.||+.|+ +|++|+|+||++.+|-.....   -....               .+.+   ...     
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~t---G~GrC---------------N~tn---~~~-----   54 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILIT---GNGRC---------------NLTN---LNI-----   54 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC---GGGT----------------EEEE---TTS-----
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeec---CCCCc---------------cccc---ccc-----
Confidence            79999999999999999997 599999999999887211000   00000               0000   000     


Q ss_pred             EeCCCeEEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC--ChhHHHHHH
Q 023975           93 LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI--GPKAGDKTR  170 (274)
Q Consensus        93 ~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~  170 (274)
                         +-..+...     .+..+...   ...+..+.    .-++...+.  ..+... ....+.++.|..  ...+.+.+.
T Consensus        55 ---~~~~~~~~-----~~~~~~f~---~~~l~~f~----~~d~~~ff~--~~Gv~~-~~~~~gr~fP~s~~a~~Vv~~L~  116 (409)
T PF03486_consen   55 ---DPSEFLSG-----YGRNPKFL---KSALKRFS----PEDLIAFFE--ELGVPT-KIEEDGRVFPKSDKASSVVDALL  116 (409)
T ss_dssp             ---SGGGEECS------TBTTTCT---HHHHHHS-----HHHHHHHHH--HTT--E-EE-STTEEEETT--HHHHHHHHH
T ss_pred             ---chhhHhhh-----cccchHHH---HHHHhcCC----HHHHHHHHH--hcCCeE-EEcCCCEECCCCCcHHHHHHHHH
Confidence               00001000     11111111   12222221    223333333  223322 233444555533  346778889


Q ss_pred             HHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975          171 DWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       171 ~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+++.||+++++++|.+++.+++. +.|.+++++++.||.||+|+|-..
T Consensus       117 ~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  117 EELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred             HHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence            9999999999999999999887766 778887778999999999999544

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.38  E-value=1.2e-11  Score=104.92  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      .+.+.+.+.+++.|++++.+++|++++.+++.+.....+|+++.||.||.|+|..
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            3667788888889999999999999876665554444567789999999999974

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.37  E-value=1.9e-11  Score=102.60  Aligned_cols=95  Identities=18%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHh-h-cCCcEEEEcCCCCceeeccceeeecCCccccc-eee-eccccc--cccEEEEEeeE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSL-Q-FSADVTLIDPKEYFEITWASLRAMVEPSFGKR-SVI-NHTDYL--VNGRIVASPAI   85 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L-~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~--~~~~~~~~~~~   85 (274)
                      ..++|+||||||||+.||.+| + .|++|+|+||.+.++   +.++..+.+..... ... .+...+  .++++..  .+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg---GLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g--nv  112 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY---GLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG--NV  112 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc---cEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe--ee
Confidence            357899999999999999876 3 499999999999988   44444444322110 010 111111  1233331  12


Q ss_pred             EEecCeEEeCCCeEEecCEEEEccCCCC
Q 023975           86 NITENEVLTAEGRRVVYDYLVIATGHKD  113 (274)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~li~a~G~~~  113 (274)
                      .+.. .+..++- ...||.+|+|+|+.+
T Consensus       113 ~VG~-Dvt~eeL-~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        113 HVGV-DLKMEEL-RNHYNCVIFCCGASE  138 (506)
T ss_pred             EecC-ccCHHHH-HhcCCEEEEEcCCCC
Confidence            2221 1222222 237999999999773

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.37  E-value=1.6e-12  Score=108.01  Aligned_cols=64  Identities=23%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTI  228 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~  228 (274)
                      ..+.+.+.+.+++.|++++.+++|+++..+++.+. |.+++|+ +.+|.||+|+|... ..++...+
T Consensus       147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~  211 (358)
T PF01266_consen  147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLG  211 (358)
T ss_dssp             HHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTT
T ss_pred             cchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeeccc
Confidence            46888899999999999999999999998888877 9999997 99999999999865 34454443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.37  E-value=3.1e-13  Score=103.35  Aligned_cols=138  Identities=28%  Similarity=0.395  Sum_probs=73.7

Q ss_pred             EEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCceeeccceee---ecCCcccc-----c-----------------eeee
Q 023975           17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRA---MVEPSFGK-----R-----------------SVIN   69 (274)
Q Consensus        17 ~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~~~g~~~~~~~~---~~~~~~~~-----~-----------------~~~~   69 (274)
                      +||||||+||++|.+|. .|.+ ++|+|+++.+|+.|.....   ...+....     .                 ....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            69999999999999997 5999 9999999999988764211   11111000     0                 0000


Q ss_pred             cc---cccc------ccEEE-EEeeEEEe--cC--eEEeCCCeEEecCEEEEccCC--CCCCChhHH-------------
Q 023975           70 HT---DYLV------NGRIV-ASPAINIT--EN--EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-------------  120 (274)
Q Consensus        70 ~~---~~~~------~~~~~-~~~~~~~~--~~--~v~~~~~~~~~~~~li~a~G~--~~~~~~~~~-------------  120 (274)
                      ..   +++.      +..+. ...+..+.  ..  .+.+.++..+.+++||+|||.  .|..|.++.             
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~  160 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR  160 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence            00   0000      12221 12222222  22  677778878999999999996  455554322             


Q ss_pred             -------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCc
Q 023975          121 -------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR  156 (274)
Q Consensus       121 -------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~  156 (274)
                             +.+..+++|.+|++++..|.  ..+.+|+++.|.+.
T Consensus       161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~--~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  161 DPEDFKGKRVVVVGGGNSAVDIAYALA--KAGKSVTLVTRSPI  201 (203)
T ss_dssp             TTGGCTTSEEEEE--SHHHHHHHHHHT--TTCSEEEEEESS--
T ss_pred             ChhhcCCCcEEEEcChHHHHHHHHHHH--hhCCEEEEEecCCC
Confidence                   12222344889999999988  45789999998764

...

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.34  E-value=2e-11  Score=102.71  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE-CCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+++.+..++.|++++.++.+..+..+++...+. ..++.++.++.||.|.|...
T Consensus        97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s  152 (396)
T COG0644          97 FDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS  152 (396)
T ss_pred             hhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence            66788999999999999999999999887665544 33346899999999999643

>PRK06847 hypothetical protein; Provisional

Probab=99.33  E-value=6.5e-11  Score=99.20  Aligned_cols=59  Identities=22%  Similarity=0.101  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      ..+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~  165 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV  165 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence            35677788888888999999999999987777788888899999999999999976543

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.33  E-value=1.9e-11  Score=95.95  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..+||+||||||+||+||+.|++ |.+|+|+||+..+|
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G   57 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG   57 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            46899999999999999999985 99999999998876

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK10015 oxidoreductase; Provisional

Probab=99.33  E-value=3.4e-11  Score=102.13  Aligned_cols=54  Identities=15%  Similarity=0.048  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +.+.+.+.+++.|++++.+++|+++..+++.+.....++.++.||.||.|.|..
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN  163 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence            566788888889999999999999876655554333445679999999999963

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.30  E-value=2e-11  Score=102.46  Aligned_cols=63  Identities=21%  Similarity=0.075  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  228 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~  228 (274)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|... ..+....+
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g  208 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLG  208 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhcc
Confidence            5677788888889999999999999987777777777766 799999999999754 34443333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.29  E-value=1e-10  Score=98.58  Aligned_cols=57  Identities=14%  Similarity=0.043  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++.|+++..++++++++.+++.+.+++++|+++.+|.||.|.|....
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST  170 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            467778888888999999999999998887778888888889999999999998764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.29  E-value=2.8e-11  Score=101.97  Aligned_cols=56  Identities=14%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++.+++|.+++.+++.+.+.+.+| ++.+|.||+|+|...
T Consensus       149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence            45788888889999999999999999987776677777776 799999999999865

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.28  E-value=1.9e-11  Score=101.32  Aligned_cols=202  Identities=17%  Similarity=0.136  Sum_probs=107.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceeeec-CCccccceeeeccccccccEEEEEee--E
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMV-EPSFGKRSVINHTDYLVNGRIVASPA--I   85 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~   85 (274)
                      +++||+|||||+.|+++|+.|++ +  ++|+|+||.+.++...+...+.. ...++....    +....+.. ....  .
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~----slka~l~~-~g~~~~~   76 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPG----SLKAKLCV-AGNINEF   76 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCc----chhhHHHH-HHHHHHH
Confidence            35899999999999999999983 4  99999999998874332211110 000000000    00000000 0000  0


Q ss_pred             EEecCeEEeCCCeEEecCEEEEccCCCCCCChhHHHHHHH-ccC-Cc---hhhhHHHHhhhhCCCCe----EEEEeCCCc
Q 023975           86 NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQ-YQA-GP---TGVELAGEIAVDFPEKK----VTLVHKGSR  156 (274)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~-~~~-g~---~~~e~a~~l~~~~~~~~----v~~~~~~~~  156 (274)
                      .+-+ .+   .-......++++|+|....- .  .+.+.+ ... +.   .-++ ..++.+..|...    -.+......
T Consensus        77 ~~~k-q~---~~~f~~~g~l~vA~~e~e~~-~--L~~l~~~~~~ngv~~~~~ld-~~~i~~~eP~l~~~~~aal~~p~~g  148 (429)
T COG0579          77 AICK-QL---GIPFINCGKLSVATGEEEVE-R--LEKLYERGKANGVFDLEILD-KEEIKELEPLLNEGAVAALLVPSGG  148 (429)
T ss_pred             HHHH-Hh---CCcccccCeEEEEEChHHHH-H--HHHHHHHHhhCCCcceeecC-HHHHHhhCccccccceeeEEcCCCc
Confidence            0000 00   00123347888898865211 0  111111 000 11   0011 112222222221    111111111


Q ss_pred             cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcE-EeecEEEEcccCCCCchhhccccc
Q 023975          157 LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      .  -....+...+.+.+.++|+++.++++|+.++.+++ ...+.+.+|++ ++|+.||.|.|-.. .+++...+.
T Consensus       149 i--V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~  220 (429)
T COG0579         149 I--VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI  220 (429)
T ss_pred             e--EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence            1  11234778888999999999999999999999888 56677888876 99999999999664 555555444

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.26  E-value=8.9e-11  Score=92.17  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeecc---CCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSV---SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .....++..+++.|+.++.+..+..++-   .+..+.|++.+|..+.++.+|+++|.+-+ .+++
T Consensus       154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~  217 (399)
T KOG2820|consen  154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP  217 (399)
T ss_pred             HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence            3456778888999999999999887762   34467889999999999999999998763 4444

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.24  E-value=1e-10  Score=98.70  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+.+. +++++.++++++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            666777777665 49999999999998877778888889989999999999997543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.23  E-value=2.5e-10  Score=89.95  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+||+||||||+|++||+.|+ +|++|+|+||...+|
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G   61 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG   61 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            4589999999999999999997 599999999988776

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.23  E-value=8.3e-11  Score=99.73  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC-----cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.++     .++.+|.||+|+|...
T Consensus       198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            4667778888999999999999999987666665543332     3799999999999764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.22  E-value=5.3e-10  Score=94.67  Aligned_cols=57  Identities=12%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++.|++++.++++.+++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            355677777888899999999999998888788888889989999999999997543

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.22  E-value=1e-10  Score=98.92  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+.+.|++++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            467788888888899999999999998877788888888989999999999997653

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.21  E-value=4.8e-11  Score=102.16  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHh----CC--cEEEcCceeeeeccC-CCceeEECCCCcEEeecEEEEcccCCCCchhhccccc
Q 023975          164 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       164 ~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      .+...+.+.+++    .|  +++.++++|++++.+ ++.+.|.+.+| ++.||.||+|+|... .+++...++
T Consensus       212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi  282 (497)
T PTZ00383        212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY  282 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence            577888888888    77  889999999999877 44566777777 699999999999765 455554443

>TIGR00275 flavoprotein, HI0933 family

Probab=99.21  E-value=1.8e-10  Score=96.97  Aligned_cols=73  Identities=16%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCCeEEEEeCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          144 PEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       144 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      .+..+..... ...+|  .....+.+.+.+.+++.|+++++++.|++++.+++.+.+.+ +++++.+|.||+|+|..
T Consensus        85 ~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~  159 (400)
T TIGR00275        85 LGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGL  159 (400)
T ss_pred             cCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCc
Confidence            4555554332 22333  23356788888889999999999999999977666666666 45679999999999964

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02463 lycopene beta cyclase

Probab=99.20  E-value=8.5e-10  Score=93.60  Aligned_cols=55  Identities=20%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+.|+++. ..+|++++.+++...|.+++|+++.||.||.|+|...
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            366777787888899996 5689999887777888899998999999999999754

>PRK07190 hypothetical protein; Provisional

Probab=99.20  E-value=2.1e-10  Score=98.78  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +...+.+.+++.|+++..+++|++++.+++.+.+.+.+|+++.|+.||.|.|...
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            4556667788889999999999999988877777778888999999999999754

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.20  E-value=3.3e-10  Score=95.03  Aligned_cols=56  Identities=18%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+.+.|++++.+++|++++.+++.+.+.+++| ++.+|.||+|+|...
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence            34666677778889999999999999988777777888877 799999999999764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.19  E-value=2.6e-10  Score=97.65  Aligned_cols=58  Identities=17%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CC---ceeEECC-CCc-----EEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EG---SDTYLTS-TGD-----TINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~---~~~v~~~-~g~-----~~~~d~vv~a~G~~~~  220 (274)
                      ..+...+.+.++++||+++++++|+++..+  ++   ...+... +|+     ....|.||+++|....
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~  294 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE  294 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence            568889999999999999999999999864  32   1223332 232     3578999999996443

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.19  E-value=2e-10  Score=96.75  Aligned_cols=54  Identities=13%  Similarity=0.134  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+.+ +. +.+++|.+++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus       113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence            5667777777764 55 789999999887888888888898999999999999754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.19  E-value=7.7e-10  Score=93.19  Aligned_cols=55  Identities=15%  Similarity=0.002  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+++.| +++. ++.+++++.+++.+.+++.+|+++.+|.||.|.|...
T Consensus       112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence            46677778888777 9998 8899999877777888888888899999999999754

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.19  E-value=2.4e-10  Score=97.18  Aligned_cols=60  Identities=20%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+...+.+.+++.|++++++++|++++.+++.+ .++++++ ++.+|.||+|+|... ..++.
T Consensus       202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~-~~l~~  262 (416)
T PRK00711        202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS-TALLK  262 (416)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch-HHHHH
Confidence            567778888889999999999999998766654 3555544 799999999999765 34443

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.18  E-value=3.8e-10  Score=95.33  Aligned_cols=59  Identities=7%  Similarity=-0.164  Sum_probs=49.8

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ...+.+.+.+.++..|.+++++++|++|+.++++  ..|++.+|+++.|+.||....+.|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            3467888888889999999999999999766433  5688889999999999999888775

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.18  E-value=4.6e-10  Score=90.84  Aligned_cols=56  Identities=11%  Similarity=0.108  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC-CcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+ +.++.+|.||.|+|...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            366778888888999999999999988777766665443 45899999999999753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.17  E-value=6.1e-09  Score=86.60  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCC--cEEeecEEEEcccCCCCchhhcc--------ccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKD--------TILKD  231 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~--------~~~~~  231 (274)
                      ..+.+.+.+.+++.|++++.+++|.++..+++.+. +.+.++  ..+.+|.+|+|+|..-...++..        .++++
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v  342 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDV  342 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCc
Confidence            35677888999999999999999999987777555 454555  48999999999998722333221        12222


Q ss_pred             ccCC-----------------CCcEEeCCCccc----cCCCCeEEeccccCCCCC
Q 023975          232 SLDT-----------------HGMLMVDENLRV----KGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       232 ~~~~-----------------~g~~~v~~~~~~----~~~~~i~~~Gd~~~~~~~  265 (274)
                      ...+                 .-++.+|++++.    ...+|+|++|-+.+..++
T Consensus       343 ~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~  397 (419)
T TIGR03378       343 LQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDP  397 (419)
T ss_pred             CCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCCh
Confidence            1111                 123778988884    137999999999876554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.17  E-value=7.5e-10  Score=93.83  Aligned_cols=55  Identities=15%  Similarity=-0.108  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|+++..+++|++++.. ++. ..+.+++| ++.++.||+|+|...
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~  240 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence            45566778889999999999999999643 344 34677777 699999999887543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07233 hypothetical protein; Provisional

Probab=99.16  E-value=2.7e-10  Score=97.36  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.|+++.++++|++|+.+++.+.+...+++.+.+|.||+|++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            45778888889889999999999999987777665555677789999999999853

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.16  E-value=4.7e-10  Score=94.54  Aligned_cols=56  Identities=11%  Similarity=0.016  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+++. |++++.++++++++.+++.+.+.+++|+++.+|.||.|.|....
T Consensus       114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            556777777766 99999999999998777777888888889999999999997653

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.16  E-value=3.1e-10  Score=94.75  Aligned_cols=52  Identities=27%  Similarity=0.361  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+.+. |++++.+++|.+++..    .|++++|+ +.||.||+|+|...
T Consensus       145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s  197 (365)
T TIGR03364       145 REAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADF  197 (365)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCCh
Confidence            34667777777665 9999999999999642    57777774 78999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.16  E-value=1.5e-10  Score=91.34  Aligned_cols=58  Identities=9%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+++....-+.++.+++.|..+..-.+++.++-.+|++..+|.+|+||-......++.
T Consensus       222 yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL~  279 (447)
T COG2907         222 YVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALLD  279 (447)
T ss_pred             HHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhcC
Confidence            3344334445679999999999998999999999999999999999998655444444

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.15  E-value=2.9e-10  Score=97.93  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ..+.+.+.+.+++.|++|.++++|++|..+++ ..+++..+|+.+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            45889999999999999999999999998876 46788888878999999999887

>PRK08013 oxidoreductase; Provisional

Probab=99.15  E-value=5.7e-10  Score=94.25  Aligned_cols=55  Identities=7%  Similarity=-0.044  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+|+++.+|.||-|.|...
T Consensus       113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            666777777764 8999999999999877778888888999999999999999754

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.15  E-value=7.3e-10  Score=93.11  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECC-CCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.++++ +|+++.||.||-|-|...
T Consensus       105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S  162 (387)
T COG0654         105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS  162 (387)
T ss_pred             HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence            37778888887765 999999999999998888878877 999999999999999654

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.14  E-value=3.9e-10  Score=94.29  Aligned_cols=59  Identities=19%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcc
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD  226 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~  226 (274)
                      +.+.+.+.+.   .+++++++|+++..+....++++.+|+++.+|.||++....-...++..
T Consensus       217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~  275 (444)
T COG1232         217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD  275 (444)
T ss_pred             HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC
Confidence            4444555554   4499999999999887788999999999999999999875443444444

>PRK09126 hypothetical protein; Provisional

Probab=99.14  E-value=3.6e-10  Score=95.30  Aligned_cols=56  Identities=9%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             HHHHHHHHH-HhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+ +..|++++.++++++++.+++.+.+.+++|+++.+|.||.|.|....
T Consensus       112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence            444455554 44699999999999998777777888888999999999999997654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.14  E-value=1.2e-10  Score=101.65  Aligned_cols=62  Identities=10%  Similarity=-0.154  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCC--cEEeecEEEEcccCCCCchhhc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      ..+...+.+.+.++|+++..+++|+++..+++.+ .+++   .++  .++.|+.||+|+|.+. ..+..
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~  216 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAE  216 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHH
Confidence            3466677777888999999999999998766543 3443   223  3799999999999765 33433

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.13  E-value=1.6e-09  Score=91.10  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+.| ++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus       107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence            46777888888877 999999999999887778888888998999999999999754

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05868 hypothetical protein; Validated

Probab=99.12  E-value=5.1e-10  Score=93.50  Aligned_cols=46  Identities=9%  Similarity=-0.029  Sum_probs=40.6

Q ss_pred             hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          175 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ..|++++.++++++++.+++.+.+.+++|+++.+|.||-|-|....
T Consensus       116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            4689999999999998777788899999999999999999997554

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.11  E-value=3.2e-09  Score=90.23  Aligned_cols=56  Identities=13%  Similarity=0.070  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEECCC-C--cEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+ +  .++.||.||.|.|....
T Consensus       123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~  182 (415)
T PRK07364        123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP  182 (415)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence            556677766664 79999999999998777777777653 2  36999999999997553

>PRK07588 hypothetical protein; Provisional

Probab=99.11  E-value=4.7e-10  Score=94.53  Aligned_cols=55  Identities=7%  Similarity=-0.037  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+. .+++++.+++|++++.+++.+.+.+++|+++.+|.||-|.|....
T Consensus       105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            4455555443 479999999999998888888889999999999999999997543

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.11  E-value=9.2e-10  Score=94.56  Aligned_cols=54  Identities=13%  Similarity=-0.018  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.|++++.+++|++++. ++.+.|.+++| ++.||.||+|+|..
T Consensus       183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence            35778888999999999999999999974 44566777777 69999999999954

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06834 hypothetical protein; Provisional

Probab=99.11  E-value=2.2e-09  Score=92.61  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      .+.+.+.+.+++.|++++.++++++++.+++.+.+++.+|+++.+|.||.|.|.....
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence            4666777888888999999999999998888888888888899999999999986643

>PRK06184 hypothetical protein; Provisional

Probab=99.11  E-value=7.8e-10  Score=96.14  Aligned_cols=55  Identities=15%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+.|+++..++++++++.+++.+.+.+   .+++++.||.||.|.|...
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS  168 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence            556777888888999999999999988877777666   5667899999999999754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.08  E-value=1.5e-09  Score=91.29  Aligned_cols=56  Identities=11%  Similarity=0.051  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus       106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            367788888877 49999999999999877777888888888999999999999754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.08  E-value=3.6e-09  Score=84.57  Aligned_cols=95  Identities=23%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CCcEEEEcCChHHHHHHHHh-h--cCCcEEEEcCCCCceeeccceeeecCCcccccee--eeccccccccEEEEEeeEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSL-Q--FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV--INHTDYLVNGRIVASPAINI   87 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L-~--~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   87 (274)
                      ..+|.|||+||||+.+|.+| +  .+++|.|+|+.+.+.   +..++-+.+...+-..  ..+.+..+..++.---.+.+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF---GLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v   96 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF---GLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV   96 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc---ceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence            46999999999999999887 4  379999999998765   4445444444322210  01111111111110011111


Q ss_pred             ecCeEEeCCCeEEecCEEEEccCCC
Q 023975           88 TENEVLTAEGRRVVYDYLVIATGHK  112 (274)
Q Consensus        88 ~~~~v~~~~~~~~~~~~li~a~G~~  112 (274)
                      .. .+.+.+ .+-.||.+++|.|+.
T Consensus        97 G~-dvsl~e-L~~~ydavvLaYGa~  119 (468)
T KOG1800|consen   97 GR-DVSLKE-LTDNYDAVVLAYGAD  119 (468)
T ss_pred             cc-cccHHH-HhhcccEEEEEecCC
Confidence            11 122211 245799999999987

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.08  E-value=3.6e-10  Score=93.85  Aligned_cols=57  Identities=23%  Similarity=0.256  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC---CCc--EEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++.|+++..++++..++.+.+...+.+.   +|+  +++||.||-|-|....
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence            36678888888889999999999999877776554432   332  7899999999997654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.08  E-value=7.9e-10  Score=95.88  Aligned_cols=57  Identities=12%  Similarity=-0.074  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC----cEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+...+++.|+++..+++|++++.+++.+.+.+.++    .++.++.||.|+|.+.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            44666677778889999999999999987776666665554    2689999999999765

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.08  E-value=8.7e-10  Score=94.79  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHhCC-cEEEcCceeeeeccCCCc-eeEEC---CCCc--EEeecEEEEcccCCCCchhhccccc
Q 023975          163 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ..+...+.+.+++.| +++.++++|++++.+++. +.+.+   .+|+  ++.|+.||+|+|... ..++...+.
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi  255 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI  255 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            357788888888876 899999999999875443 55543   3453  699999999999875 555555443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.07  E-value=6e-09  Score=90.45  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eE--ECCCC--cEEeecEEEEccc-CCCCchhhcc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY--LTSTG--DTINADCHFLCTG-KPVGSDWLKD  226 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v--~~~~g--~~~~~d~vv~a~G-~~~~~~~~~~  226 (274)
                      ..+...+.+.+++.|++++++++++++..+++.+ .+  ...++  .++.++.||+|+| +..+.+++..
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            3467788888899999999999999998665533 23  33443  3689999999998 6666555543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.07  E-value=4.9e-09  Score=90.99  Aligned_cols=57  Identities=14%  Similarity=0.022  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC---Cc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|+++..+++|+++..+++.+.+.+.+   |+  ++.++.||+|+|.+.
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa  216 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV  216 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence            3455666777888999999999999998776666665543   43  789999999999865

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.06  E-value=4e-10  Score=97.07  Aligned_cols=52  Identities=19%  Similarity=0.114  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.++.  ++|.++++|+.|+.+++.+.|.+.+|+++.||.||+|+..
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~  278 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH  278 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence            345555555543  6899999999999888888888888888999999999863

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.06  E-value=7.3e-09  Score=89.31  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--CCC--cEEeecEEEEcccC-CCCchhh
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STG--DTINADCHFLCTGK-PVGSDWL  224 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~~~~~d~vv~a~G~-~~~~~~~  224 (274)
                      ..+...+.+.+++.|++++++++++++..+++.+ .+..  .++  ..+.++.||+|+|- ..+.+++
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~  198 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL  198 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence            4577788888899999999999999998765543 3433  233  36899999999984 4444433

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.06  E-value=1e-09  Score=93.81  Aligned_cols=66  Identities=21%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHHh-CCcEEEcCceeeeeccC-CCceeEE---CCCCc--EEeecEEEEcccCCCCchhhccccc
Q 023975          163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ..+.+.+.+.+.+ .|++++++++|+.++.+ ++.+.+.   +.+++  ++.||.||+|+|... ..++...+.
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi  256 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGI  256 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence            3567778787754 59999999999999866 5556554   44453  689999999999876 566655544

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.06  E-value=2.5e-09  Score=91.90  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=35.0

Q ss_pred             EEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       179 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +|+++++|++|+.+++.+.|.+++|+++.||.||+|+..
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            899999999999887777888888989999999999874

>PRK06753 hypothetical protein; Provisional

Probab=99.05  E-value=5.1e-09  Score=87.73  Aligned_cols=54  Identities=13%  Similarity=0.039  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+.  +.+++.++++++++.+++.+.+++++|+++.+|.||-|.|....
T Consensus       100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        100 LIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             HHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            4444444443  46889999999998888888899999999999999999996543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.05  E-value=2.6e-10  Score=102.13  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++ |+++..+++|++++.+++.+.|.+++|..+.+|.||+|+|...
T Consensus       408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            3577888888888 9999999999999877777778888887789999999999764

>PRK08244 hypothetical protein; Provisional

Probab=99.05  E-value=1.5e-09  Score=94.19  Aligned_cols=56  Identities=13%  Similarity=0.029  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC--CC-cEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS--TG-DTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+++.|++++.++++++++.+++.+.+.+.  +| +++.+|.||.|.|....
T Consensus       102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            5567777788889999999999999877777666543  45 47999999999997653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.05  E-value=8.7e-10  Score=92.80  Aligned_cols=56  Identities=18%  Similarity=-0.031  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.| ..+..++.+..++.+.+...|.+.+|+ +.+|.||+|+|...
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~  212 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA  212 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence            467788888899999 566668889888764245678888886 99999999999764

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.04  E-value=2.2e-09  Score=92.28  Aligned_cols=66  Identities=18%  Similarity=0.213  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEEC---CCC--cEEeecEEEEcccCCCCchhhccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ..+...+.+.+++.|++++++++|++++.+++ .+.+.+   .+|  .++.+|.||+|+|... ..+....+.
T Consensus       178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi  249 (483)
T TIGR01320       178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI  249 (483)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence            46788888889999999999999999987543 444542   334  2689999999999775 555554443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.03  E-value=3.6e-09  Score=88.91  Aligned_cols=57  Identities=11%  Similarity=0.011  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +...+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.+|.||.|.|.....
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v  169 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV  169 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence            44455555544 4799999999999988888888999999999999999999986543

>PRK07236 hypothetical protein; Provisional

Probab=99.03  E-value=6.9e-09  Score=87.31  Aligned_cols=44  Identities=18%  Similarity=0.005  Sum_probs=38.7

Q ss_pred             CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          177 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       177 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +++++.++++++++.+++.+.+.+++|+++.+|.||.|-|....
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            57899999999999888888899999999999999999996543

>PRK06185 hypothetical protein; Provisional

Probab=99.03  E-value=7.4e-09  Score=87.79  Aligned_cols=55  Identities=18%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCce---eEECCCCc-EEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+ .|+++..++++.+++.+++.+   .+...+|+ ++.+|.||.|.|...
T Consensus       110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S  169 (407)
T PRK06185        110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS  169 (407)
T ss_pred             HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence            55667776665 489999999999998766644   34455664 799999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.03  E-value=2e-09  Score=69.10  Aligned_cols=77  Identities=26%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG  203 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g  203 (274)
                      .+++|.+|+|+|..+.  ..+.+++++.+.+.+++.+++.+...+.+.+++.||++++++.+.+++.+++.+.|+++||
T Consensus         4 ViGgG~ig~E~A~~l~--~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen    4 VIGGGFIGIELAEALA--ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EESSSHHHHHHHHHHH--HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             EECcCHHHHHHHHHHH--HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            3577899999999998  5789999999999999999999999999999999999999999999998877766877775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09897 hypothetical protein; Provisional

Probab=99.02  E-value=7.6e-09  Score=89.32  Aligned_cols=52  Identities=17%  Similarity=0.050  Sum_probs=40.3

Q ss_pred             HHHHHHHhCC--cEEEcCceeeeeccCCCceeEECCC-CcEEeecEEEEcccCCC
Q 023975          168 KTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV  219 (274)
Q Consensus       168 ~~~~~~~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.|  +.++.+++|++++.+++.+.+.+.+ |..+.+|.||+|+|..+
T Consensus       112 ~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        112 RLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence            3444555666  7888899999998887778887755 46899999999999743

>PRK07045 putative monooxygenase; Reviewed

Probab=99.02  E-value=3.7e-09  Score=89.03  Aligned_cols=56  Identities=9%  Similarity=-0.001  Sum_probs=44.7

Q ss_pred             HHHHHHHHHH-hCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLI-SKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+. ..|++++.+++++.++.+++.  +.+++++|+++.+|.||-|.|....
T Consensus       108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            5566777665 468999999999999876554  3678888999999999999997543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.02  E-value=1.2e-09  Score=94.73  Aligned_cols=57  Identities=14%  Similarity=0.043  Sum_probs=45.4

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCC-----cEEeecEEEEcccCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKP  218 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~  218 (274)
                      ...+.+.+.+.+++.|++|+++++|++|..+++. ..+.+.++     +++.+|.||+++...
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            3458888999999999999999999999877664 34444443     578999999998864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.02  E-value=1.9e-09  Score=93.79  Aligned_cols=56  Identities=11%  Similarity=0.032  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.|++|+.+++|++|..+++. +.|++.+|+++.+|.||++++..
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            357788888889999999999999999876654 56888888889999999998853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.01  E-value=6.6e-09  Score=85.45  Aligned_cols=52  Identities=13%  Similarity=0.010  Sum_probs=43.1

Q ss_pred             HHHHHHHHHH-hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc
Q 023975          165 AGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  216 (274)
Q Consensus       165 ~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  216 (274)
                      -.+.+.+++. +.+-.|.++.+|.+|..+++++.|++.+.++..+|.+|+++.
T Consensus       207 Gmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP  259 (450)
T COG1231         207 GMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP  259 (450)
T ss_pred             cHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence            3455555554 457889999999999999999999999866899999999987

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.01  E-value=2.3e-09  Score=89.74  Aligned_cols=56  Identities=5%  Similarity=0.007  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+.+.+ ++++.++++++++.+++.+.+.++++ ++.+|.||-|-|....
T Consensus       105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            46777888777764 99999999999988877888888776 8999999999997543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.00  E-value=4.5e-09  Score=89.94  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-e--EECCCCc--EEeecEEEEccc-CCCCchhhc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-T--YLTSTGD--TINADCHFLCTG-KPVGSDWLK  225 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~--v~~~~g~--~~~~d~vv~a~G-~~~~~~~~~  225 (274)
                      ..+...+.+.+++.|++++.+++++++..++ +.+ .  +...+++  .+.++.||+|+| +..|.+++.
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            4577888888999999999999999998653 322 2  3334453  478999999999 455444443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.00  E-value=4.1e-10  Score=95.50  Aligned_cols=48  Identities=23%  Similarity=0.382  Sum_probs=42.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~   59 (274)
                      ..+||+|||||+.|+.+|+.++ +|++|+|+|+++.-.++.+....++.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiH   59 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIH   59 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCcc
Confidence            5689999999999999999998 79999999999988877776665554

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.00  E-value=4.7e-09  Score=88.62  Aligned_cols=55  Identities=18%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+ .|++++.++++++++.+++.+.+++++|.++.+|.||.|.|...
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence            44566666655 58999999999999877777888888888899999999999764

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.00  E-value=4.5e-09  Score=87.85  Aligned_cols=55  Identities=15%  Similarity=0.034  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+. .+..+..+..|.+|+..++...+++++|+++.|+.||-|.|..+
T Consensus        88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence            36667777777 44566778999999988887888999999999999999999654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06996 hypothetical protein; Provisional

Probab=99.00  E-value=5.9e-09  Score=88.06  Aligned_cols=54  Identities=11%  Similarity=-0.035  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC---cEEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.+++.|+++..++++++++.+++.+.+.+.++   +++.||.||-|.|.
T Consensus       116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            3677888888888999999999999988888888887754   58999999999995

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.00  E-value=1.4e-08  Score=89.07  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECC--CC--cEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+.+ .|++++.++++++++.+++.+.+++.  +|  +++.+|.||-|.|....
T Consensus       114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            355566666666 49999999999999988887777765  56  47999999999997544

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.00  E-value=5.5e-09  Score=87.91  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC------C--cEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+.|++++.. .++++..+++.+.+.+.+      |  .++.+|.||.|.|...
T Consensus        94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S  155 (388)
T TIGR02023        94 FDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS  155 (388)
T ss_pred             HHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence            5667778788889999765 588887777776666542      2  3799999999999643

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02697 lycopene epsilon cyclase

Probab=99.00  E-value=7.1e-09  Score=89.50  Aligned_cols=55  Identities=11%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+.|+++ .+++|+.++.+++... +.+.+|.++.|+.||.|+|...
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            36677778888889998 6678999887666554 4567788999999999999865

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.98  E-value=2.2e-09  Score=91.48  Aligned_cols=38  Identities=39%  Similarity=0.540  Sum_probs=33.6

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ++.+++||+||||||||+++|+.|++ |++|+|+||...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            45567999999999999999999984 999999999753

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.97  E-value=9.9e-09  Score=86.46  Aligned_cols=55  Identities=11%  Similarity=-0.055  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+.|+++. ..++..++.+ ++...+.+++|+++.|+.||.|+|..+
T Consensus        86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            466777787888899886 5578888766 455677888888999999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.97  E-value=4.4e-09  Score=88.91  Aligned_cols=56  Identities=18%  Similarity=0.179  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+.+ .+++++.++++++++.+++.+.+++   .+++++.+|.||-|-|...
T Consensus       108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS  167 (400)
T ss_pred             HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence            366777777765 4899999999999987777776665   3446799999999999654

>TIGR02730 carot_isom carotene isomerase

Probab=98.97  E-value=1.9e-09  Score=93.46  Aligned_cols=57  Identities=12%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++|+.+++|++|..+++ ...|++.+|+++.+|.||+++|...
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD  286 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence            45788889999999999999999999987655 4567888898999999999998643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.97  E-value=2e-08  Score=85.11  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +...+.+.+.+ .|+++..++++++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus       113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S  168 (405)
T PRK08850        113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS  168 (405)
T ss_pred             HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence            44566666655 47999999999999877778888899999999999999999754

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.97  E-value=2.7e-08  Score=82.57  Aligned_cols=36  Identities=31%  Similarity=0.562  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~---~-g~~v~vie~~~~~g   48 (274)
                      +++|+|||+|++|++.|.+|.   + ...+.|+|+.+.+|
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            379999999999999999984   2 23399999999876

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.96  E-value=6e-09  Score=89.84  Aligned_cols=40  Identities=20%  Similarity=0.155  Sum_probs=35.8

Q ss_pred             cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+|+++++|+.|+.+++.+.|++++|+++.||.||+|+..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence            7899999999999888788888888888999999999885

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.96  E-value=6.8e-09  Score=88.31  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~   49 (274)
                      ..+||+|||+|.|||+||..++.|.+|+|+||.+..++
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence            45899999999999999999878999999999887654

>PRK11445 putative oxidoreductase; Provisional

Probab=98.94  E-value=1.8e-08  Score=83.60  Aligned_cols=53  Identities=13%  Similarity=-0.021  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC-CCCc--EEeecEEEEcccCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKP  218 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~  218 (274)
                      +.+.+.+. .+.|+++..++.++.++.+++.+.+.+ ++|+  ++.||.||.|+|..
T Consensus       101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~  156 (351)
T PRK11445        101 FDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN  156 (351)
T ss_pred             HHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence            44455553 457899999999999987777777764 5664  68999999999974

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.93  E-value=1.7e-08  Score=85.17  Aligned_cols=56  Identities=7%  Similarity=-0.042  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeecc-CCCceeEEC-CCCc--EEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+.+.|++++.++++++++. +++...|++ .+|+  ++.+|.||-|-|....
T Consensus       105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~  164 (392)
T PRK08243        105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV  164 (392)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence            455666666778999999999998876 555566666 4664  6899999999996543

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.92  E-value=1.4e-09  Score=67.12  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             EEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccce
Q 023975           18 VIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL   54 (274)
Q Consensus        18 IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~   54 (274)
                      |||||++||++|+.|++ |++|+|+|+++.+|+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999984 99999999999998665443

...

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.92  E-value=6.9e-08  Score=84.48  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~   52 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD   52 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence            4689999999999999999997 499999999988765

>PLN02661 Putative thiazole synthesis

Probab=98.92  E-value=2.7e-08  Score=80.65  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g   48 (274)
                      ..+||+|||||++|++||++|+ . |++|+|+||...+|
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            3589999999999999999997 3 89999999987775

>PRK06126 hypothetical protein; Provisional

Probab=98.91  E-value=5.2e-08  Score=85.72  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCceeEEC---CCCc--EEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~  219 (274)
                      +...+.+.+++ .|++++.++++++++.+++.+.+.+   .+|+  ++.+|.||.|.|...
T Consensus       128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S  188 (545)
T PRK06126        128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence            55566666665 5899999999999988777666554   3353  689999999999754

>PLN02612 phytoene desaturase

Probab=98.91  E-value=3.3e-08  Score=86.88  Aligned_cols=55  Identities=16%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.++++  ..+++.+|+++.+|.||+|++.
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            347788888888899999999999999875444  3477778889999999999864

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.90  E-value=8.2e-09  Score=87.79  Aligned_cols=58  Identities=21%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCCc--EEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~~  220 (274)
                      ..+...+.+.+++.|++++.++.++++..+++.+ .+..   .+|+  ++.|+.||+|||-...
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4567888889999999999999999998876644 3332   4555  6889999999996543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.89  E-value=3.3e-08  Score=86.94  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCceeEEC--CCCc-EEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT--STGD-TINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~~~~d~vv~a~G~~~~  220 (274)
                      +...+.+.+.+. +++++.++++++++.+++.+.+.+  .+++ ++.+|.||.|.|....
T Consensus       127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~  186 (547)
T PRK08132        127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP  186 (547)
T ss_pred             HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence            455666666664 799999999999988777665543  4554 6999999999997654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.88  E-value=3.1e-08  Score=84.67  Aligned_cols=56  Identities=11%  Similarity=0.035  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhC---CcEEEcCceeeeecc-------CCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISK---KVDVKLGERVNLDSV-------SEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~---gv~i~~~~~v~~i~~-------~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+++.   +++++.++++.+++.       +++.+.+.+.+|+++.||.||-|-|....
T Consensus       119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            556677777665   499999999999964       24567888899999999999999997543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07121 hypothetical protein; Validated

Probab=98.87  E-value=1.7e-08  Score=87.55  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cc-eeEECC-CCc--EEee-cEEEEcccC-CCCchhhc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYLTS-TGD--TINA-DCHFLCTGK-PVGSDWLK  225 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~-~g~--~~~~-d~vv~a~G~-~~~~~~~~  225 (274)
                      ..+...+.+.+++.|++++.+++++++..++ +. ..|... +++  .+.+ +.||+|+|- ..|.+++.
T Consensus       177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            3567778888889999999999999997653 33 334332 332  5788 999999994 44444443

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.87  E-value=6.8e-08  Score=82.12  Aligned_cols=53  Identities=15%  Similarity=0.030  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.  +..++.+++|++++.+++.+.+.+++|+++.+|.||.|.|...
T Consensus       107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219       107 FLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             HHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence            4444444442  4567889999999887778889899999999999999999654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.87  E-value=4.3e-09  Score=93.25  Aligned_cols=58  Identities=12%  Similarity=-0.118  Sum_probs=43.8

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEEC---CCCc--EEeecEEEEcccCCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLT---STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~  219 (274)
                      +..+...+.+.+++.|+++..+++|.++..+  ++.+ .|..   .+++  ++.+|.||+|+|.+.
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws  296 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC  296 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence            3467778888899999999999999998765  2433 3332   2333  689999999999764

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.87  E-value=2.1e-08  Score=88.43  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      ..++||+|||+|++|++||+.++ +|++|+|+||....|+..
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~   48 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT   48 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence            34689999999999999999997 599999999999877543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.86  E-value=2.5e-08  Score=76.41  Aligned_cols=49  Identities=22%  Similarity=0.190  Sum_probs=39.1

Q ss_pred             CCcEEEcCceeeeeccCCCceeEECCCCc-EEeecEEEEcccCCCCchhh
Q 023975          176 KKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       176 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~~  224 (274)
                      -..+|+.+++|+++...++..++.+++|. ...+|.||++........++
T Consensus       116 tdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL  165 (331)
T COG3380         116 TDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL  165 (331)
T ss_pred             ccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence            46778889999999988888999997764 67899999998754444555

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.86  E-value=1.4e-09  Score=92.43  Aligned_cols=52  Identities=25%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC---CcEEeecEEEEcccC
Q 023975          166 GDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST---GDTINADCHFLCTGK  217 (274)
Q Consensus       166 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g~~~~~d~vv~a~G~  217 (274)
                      ...+.+.+++.|+++++++.+.++..+++.+ .|.+.+   ..++.|+.+|-|||-
T Consensus        93 ~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   93 KAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455566677899999999999999887544 354443   358999999999993

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.84  E-value=6.7e-08  Score=83.13  Aligned_cols=55  Identities=16%  Similarity=0.271  Sum_probs=43.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-e-eEECCCCc-----EEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTSTGD-----TINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~-----~~~~d~vv~a~G~  217 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.++++ + .+++.+|+     ++.||.||+|+..
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            346788888898899999999999999754332 3 46665554     7999999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=6.5e-08  Score=85.44  Aligned_cols=56  Identities=14%  Similarity=0.016  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC----Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE----GS-DTYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~----~~-~~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.||+++.++.++++..++    +. ..+.   ..+|+  .+.|+.||+|||-.
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  205 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS  205 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence            4567778888888999999999999987544    33 3333   24554  57899999999954

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.83  E-value=4.4e-08  Score=84.35  Aligned_cols=62  Identities=13%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCC--Cc----eeEECCCC---cEEeecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+.+.+.+.+++.|++|+++++|++|+.++  +.    ..+.+.+|   +++.+|.||+|++......+++
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP  290 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence            356778899999999999999999998653  22    22334433   4689999999998643334443

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.83  E-value=4e-08  Score=84.52  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|+++..+ .++.+..+++.+ .+.. +++.+.++.||+|||-..
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence            457788888888899999876 677776554443 3444 566899999999999644

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.83  E-value=1.1e-07  Score=83.36  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-e-eEE---CCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.||++++++.++++..+++. + .+.   ..+|+  .+.|+.||+|||-.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            456777888888899999999999998765443 3 332   24564  58999999999953

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.82  E-value=2.8e-09  Score=79.06  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~   49 (274)
                      ..||+||||||+||+||++|+ +|.+|+|+||+-.+|+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG   67 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG   67 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence            469999999999999999998 5999999999988873

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.82  E-value=4.6e-08  Score=82.36  Aligned_cols=55  Identities=7%  Similarity=-0.066  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeecc-CCCceeEECC-CCc--EEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G~~~  219 (274)
                      +...+.+.+.+.|+.++.+..++.+.. +++...|.+. +|+  ++.+|.||-|-|...
T Consensus       105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S  163 (390)
T TIGR02360       105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG  163 (390)
T ss_pred             HHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence            455666667777999999888777644 4455666664 675  689999999999654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.82  E-value=4.6e-08  Score=84.94  Aligned_cols=53  Identities=23%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhC-CcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975          165 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       165 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +...+.+.+++. |+.+. ...+.++..+++. ..|.+.+|..+.|+.||+|||..
T Consensus       102 y~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192        102 YRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             HHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            455666777655 88885 4568887655554 45888889999999999999953

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.81  E-value=7.2e-08  Score=81.34  Aligned_cols=34  Identities=35%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +||+||||||+|++||+.|+ +|++|+|+||....
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            58999999999999999998 49999999997654

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.81  E-value=1.8e-07  Score=82.26  Aligned_cols=38  Identities=29%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--Ccee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--YFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~--~~g~   49 (274)
                      ..+||+|||+|.|||+||..++ .|.+|+|+||.+  ..|+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG   43 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG   43 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence            4589999999999999999997 599999999998  5554

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.81  E-value=1.2e-07  Score=84.35  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            3579999999999999999997 599999999987554

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=5.7e-08  Score=85.41  Aligned_cols=55  Identities=11%  Similarity=-0.151  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCCc--EEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~  217 (274)
                      ..+...+.+.+++.||++++++.++++..+++.+ .+..   .+++  .+.|+.||+|||-
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            3466677777777899999999999998765543 3432   2343  6789999999994

>PLN02676 polyamine oxidase

Probab=98.80  E-value=4.7e-08  Score=84.34  Aligned_cols=40  Identities=23%  Similarity=0.138  Sum_probs=36.7

Q ss_pred             cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+|+++++|++|..+++++.|.+.+|+++.||.||+|.+.
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            6799999999999888889999999999999999999873

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.80  E-value=4.2e-09  Score=78.49  Aligned_cols=38  Identities=26%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~   49 (274)
                      ..+||+||||||+||+||+.|++ |++|+++|++..+|+
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG   54 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG   54 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            35899999999999999999985 999999999988873

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=7.3e-08  Score=85.01  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.||+++.++.+.++..+++.+ .+   ...+|+  .+.|+.||+|||-.
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            4577778888888999999999999987655432 22   234554  58999999999954

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.80  E-value=1.6e-07  Score=77.20  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=57.9

Q ss_pred             CccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          155 SRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      +++.....+.+.+.+.+.+++.|++++.+++|.+++..++. ..+.+++|.++++|.||+|+|... .+|+.
T Consensus       165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~~  235 (486)
T COG2509         165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RDWFE  235 (486)
T ss_pred             cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HHHHH
Confidence            34444556678899999999999999999999999988774 568899999999999999999876 44443

>PRK07538 hypothetical protein; Provisional

Probab=98.79  E-value=4.6e-08  Score=83.07  Aligned_cols=55  Identities=13%  Similarity=-0.031  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHh-CC-cEEEcCceeeeeccCCCceeEECCCC-----cEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+.+ .| ..++.++++++++.+++.+.+.+.++     +++.||.||-|.|...
T Consensus       104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S  165 (413)
T PRK07538        104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS  165 (413)
T ss_pred             HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence            55566666654 46 57999999999987666555554432     4899999999999644

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.79  E-value=1e-08  Score=84.37  Aligned_cols=97  Identities=25%  Similarity=0.332  Sum_probs=56.2

Q ss_pred             cEEEEcCChHHHHHHHHhhc-CCcEEEE-cCCCCceeec--cce---------------e--------------eecC--
Q 023975           15 RVVVIGGGVAGSLVAKSLQF-SADVTLI-DPKEYFEITW--ASL---------------R--------------AMVE--   59 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~-g~~v~vi-e~~~~~g~~~--~~~---------------~--------------~~~~--   59 (274)
                      ||+|||||+||+.||+.+++ |++|+|+ .+.+.++...  ..+               .              ..++  
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            79999999999999999985 9999999 4444332110  000               0              0000  


Q ss_pred             Ccccccee---e----------eccccccccEEEEEeeEEEec--C---eEEeCCCeEEecCEEEEccCC
Q 023975           60 PSFGKRSV---I----------NHTDYLVNGRIVASPAINITE--N---EVLTAEGRRVVYDYLVIATGH  111 (274)
Q Consensus        60 ~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~li~a~G~  111 (274)
                      .....+..   .          .......++.+.+..+.++..  .   .|.+.+|..+.++.+|+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            00000100   0          011112357777777777643  2   678889999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=1.7e-07  Score=82.78  Aligned_cols=56  Identities=13%  Similarity=0.016  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+.+ .||+++.++.+.++..+++.+ .+   ...+|+  .+.|+.||+|||-.
T Consensus       137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~  199 (577)
T PRK06069        137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA  199 (577)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence            3466677776665 699999999999987655533 22   234564  58999999999954

>PLN02487 zeta-carotene desaturase

Probab=98.79  E-value=7.6e-08  Score=83.96  Aligned_cols=62  Identities=8%  Similarity=0.029  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCC--c----eeEEC---CCCcEEeecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S----DTYLT---STGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~----~~v~~---~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+.+.+.+.++++|++|++++.|.+|+.+++  +    ..+++   .+++.+.+|.||+|++......+++
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp  366 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP  366 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence            4788899999999999999999999987632  2    34555   3345789999999999643333443

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.78  E-value=7.2e-08  Score=84.40  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~   49 (274)
                      ..+||+|||+|.||++||..+++|.+|+|+||.+..++
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg   45 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS   45 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence            45899999999999999999978999999999887654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.78  E-value=1.8e-07  Score=82.62  Aligned_cols=56  Identities=14%  Similarity=-0.047  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE---CCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.|++++.++.++++..+++.+ .+.   ..+|+  .+.|+.||+|||-.
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            3466777777888899999999999997665543 232   34564  68999999999953

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.77  E-value=1.8e-08  Score=78.87  Aligned_cols=197  Identities=13%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccce-eeecCC-------ccccceeeeccccccccEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEP-------SFGKRSVINHTDYLVNGRIV   80 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~   80 (274)
                      ..+|++|||||+.|++.|++|.   ++.+|.|+|+...++-.-... +..+..       .+......+..+.       
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~L-------  119 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGREL-------  119 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHH-------
Confidence            4699999999999999999985   499999999998876321111 110000       0000000000000       


Q ss_pred             EEeeEEEecCeEEeCCCeEEec---CEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHh--hhhCCCCeE--EEEeC
Q 023975           81 ASPAINITENEVLTAEGRRVVY---DYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEI--AVDFPEKKV--TLVHK  153 (274)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~---~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l--~~~~~~~~v--~~~~~  153 (274)
                                .-..-+.+.++|   -++|+||+.. .+|.++..--.....+..++++....  .+..|..+-  .+...
T Consensus       120 ----------lY~yc~e~~IpyKk~GKLIVAt~~~-EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sP  188 (453)
T KOG2665|consen  120 ----------LYEYCDEKKIPYKKTGKLIVATESE-EIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSP  188 (453)
T ss_pred             ----------HHHHhhhcCCChhhcceEEEEeChh-hcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCC
Confidence                      000012234444   4689999876 23332211112222233333321111  000111100  01111


Q ss_pred             CCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-----eeEECCCCcEEeecEEEEcccCCCCchhhcccc
Q 023975          154 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI  228 (274)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~  228 (274)
                      +..++.  ...+...+.+.++..|.++.++-++..+....+.     +.|.-..++++++..+|-|+|... .......+
T Consensus       189 htGIvD--~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sg  265 (453)
T KOG2665|consen  189 HTGIVD--WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSG  265 (453)
T ss_pred             Ccceee--hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhC
Confidence            111111  1235566777799999999999999998765542     233333467999999999999764 33333344


Q ss_pred             c
Q 023975          229 L  229 (274)
Q Consensus       229 ~  229 (274)
                      +
T Consensus       266 c  266 (453)
T KOG2665|consen  266 C  266 (453)
T ss_pred             C
Confidence            4

>TIGR00551 nadB L-aspartate oxidase

Probab=98.76  E-value=1.6e-07  Score=81.29  Aligned_cols=57  Identities=16%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCC-C--cEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST-G--DTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~-g--~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++ .||+++.++.++++..+++.+ .+...+ +  ..+.++.||+|||-..
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            4567778888877 699999999999997655533 343332 3  3689999999999643

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.75  E-value=4.5e-07  Score=79.75  Aligned_cols=64  Identities=19%  Similarity=0.094  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC-CCCc--EEeec-EEEEccc-CCCCchhhcc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT-STGD--TINAD-CHFLCTG-KPVGSDWLKD  226 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~-~~g~--~~~~d-~vv~a~G-~~~~~~~~~~  226 (274)
                      ..+...+.+.+++.|+++++++.++++..+++.+ .+.. .+++  .+.++ .||+|+| +..|.+++..
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            4466677788888999999999999998765543 2333 2443  57885 6999777 5665554443

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.75  E-value=3.7e-07  Score=81.06  Aligned_cols=55  Identities=9%  Similarity=0.001  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeecc-CCCce-eEE---CCCCc--EEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSD-TYL---TSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~---~~~g~--~~~~d~vv~a~G~  217 (274)
                      ..+...+.+.+++.|++++.++.++++.. +++.+ .+.   ..+|+  .+.|+.||+|||-
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  227 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG  227 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence            45677788888889999999999999875 34433 333   34564  6789999999983

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=1.3e-07  Score=84.07  Aligned_cols=51  Identities=20%  Similarity=0.185  Sum_probs=38.3

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEEC---CCCc--EEeecEEEEcccC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGK  217 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~  217 (274)
                      +.+.+.+++.||++++++.++++..+++. ..+..   .+|+  .+.|+.||+|||-
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            55666777889999999999999765553 33433   2453  6899999999995

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.72  E-value=2.2e-07  Score=80.74  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=33.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~   49 (274)
                      .+||+|||+|.|||+||..+++|.+|+|+||.+..++
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g   39 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS   39 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence            4799999999999999999988999999999987553

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.71  E-value=6.7e-08  Score=80.06  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhC-CcEEEcCceeeeeccCCCc-eeEECC-----CCcEEeecEEEEcccCCCCchhhcccccccccCCC
Q 023975          164 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH  236 (274)
Q Consensus       164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~  236 (274)
                      .+.+.+.+.+++. |+++.++++|++|+..+++ +.|...     +.+++.++.|++..|-.. ..++...+++-... -
T Consensus       182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~g-y  259 (488)
T PF06039_consen  182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKG-Y  259 (488)
T ss_pred             HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcc-c
Confidence            4777888888776 9999999999999988765 666542     235899999999999764 67777666522111 1


Q ss_pred             CcEEeCCC-cccc-------CCCCeEEeccccCCCCCC
Q 023975          237 GMLMVDEN-LRVK-------GQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       237 g~~~v~~~-~~~~-------~~~~i~~~Gd~~~~~~~~  266 (274)
                      |.+.|-.. +.+.       ....||-.-.+-.+|...
T Consensus       260 ggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSv  297 (488)
T PF06039_consen  260 GGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSV  297 (488)
T ss_pred             CCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccC
Confidence            22333322 2221       145677776655555544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=3e-07  Score=81.39  Aligned_cols=56  Identities=11%  Similarity=0.003  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GS-DTYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.||++++++.++++..++ +. ..+.   ..+|+  .+.|+.||+|||-.
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  211 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY  211 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            4567778888888999999999999987654 32 3333   34564  68899999999943

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.71  E-value=1.2e-07  Score=77.00  Aligned_cols=57  Identities=12%  Similarity=-0.010  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCC--ceeEECCC---------------CcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTST---------------GDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~---------------g~~~~~d~vv~a~G~~~~  220 (274)
                      .+..++-+.+++.|++|+.+..+.++.-+++  .+.+.++|               |-++.+..-|+|-|....
T Consensus       184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~  257 (621)
T KOG2415|consen  184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS  257 (621)
T ss_pred             HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence            3788999999999999999988877764433  23344332               347889999999997654

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.70  E-value=5.8e-07  Score=79.72  Aligned_cols=54  Identities=9%  Similarity=-0.093  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~  217 (274)
                      .+...+.+.+++.+ ++++.++.+.++..+++.+ .+   ...+++  .+.++.||+|||-
T Consensus       133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence            45566767777765 9999999999987554432 23   234554  6899999999994

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=4.6e-07  Score=80.15  Aligned_cols=56  Identities=14%  Similarity=0.038  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEEC---CCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLT---STGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+.+.|++++.++.+.++..+ ++. ..+..   .+|+  .+.++.||+|||-.
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  210 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA  210 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence            346677777778889999999999998754 332 33432   3454  67899999999953

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.68  E-value=3.7e-07  Score=66.50  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             CCcEEE-cCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          176 KKVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       176 ~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .|+++. ...+|+++...++...+.+.+|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            465554 456899999888888899999999999999999995

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.67  E-value=6.5e-07  Score=79.03  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=34.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ...||+|||+|.+||+||+.++ .|.+|+|+||....|+.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            3589999999999999999987 59999999999887754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.66  E-value=4.1e-07  Score=80.85  Aligned_cols=56  Identities=13%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEEC---CCCc--EEeecEEEEcccC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLT---STGD--TINADCHFLCTGK  217 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~---~~g~--~~~~d~vv~a~G~  217 (274)
                      ...+...+.+.+.+.||+++.++.+.++..+ ++. ..+..   .+|+  .+.++.||+|||-
T Consensus       186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            3456777888788889999999999997654 333 33332   3554  6799999999994

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.64  E-value=3.4e-07  Score=80.82  Aligned_cols=55  Identities=13%  Similarity=-0.005  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEE---CCCCc--EEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYL---TSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~---~~~g~--~~~~d~vv~a~G~  217 (274)
                      ..+...+.+.+.+.|+++++++.++++..+ ++. ..+.   ..+|+  .+.|+.||+|||-
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            456777777777889999999999998764 443 3333   33554  5789999999994

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.64  E-value=1.3e-06  Score=76.80  Aligned_cols=41  Identities=20%  Similarity=0.356  Sum_probs=35.7

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      +..+||+|||+| +|++||..++ .|.+|+|+||.+.+|+...
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            347899999999 8999999887 5999999999988886544

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.64  E-value=3.9e-08  Score=84.27  Aligned_cols=41  Identities=39%  Similarity=0.640  Sum_probs=36.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      .+.++|+|||||+|||+||+.|+ .|++|+|+|..+.+|+.-
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI   54 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI   54 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence            34579999999999999999998 599999999999999553

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.63  E-value=2e-06  Score=76.05  Aligned_cols=64  Identities=16%  Similarity=0.031  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECC-CCc--EEee-cEEEEcccC-CCCchhhcc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS-TGD--TINA-DCHFLCTGK-PVGSDWLKD  226 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~-~g~--~~~~-d~vv~a~G~-~~~~~~~~~  226 (274)
                      ..+...+.+.+++.|+++++++.++++..+++. ..|... +++  .+.+ +.||+|+|- ..|.+++..
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            346677888889999999999999998765443 334433 343  5676 689999994 444455443

>PRK08275 putative oxidoreductase; Provisional

Probab=98.62  E-value=7.6e-07  Score=78.35  Aligned_cols=57  Identities=19%  Similarity=0.143  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCce-eEE---CCCCc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYL---TSTGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++.++.++++..+ ++.+ .+.   ..+|+  .+.++.||+|||-..
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            356778888888899999999999999765 4433 332   34564  578999999999643

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.62  E-value=6e-07  Score=78.61  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g~   49 (274)
                      ..+||+|||+|.|||+||+.++++.+|+|+||....++
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g   44 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEG   44 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCC
Confidence            45799999999999999999986689999999886553

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.62  E-value=8.4e-07  Score=78.22  Aligned_cols=55  Identities=20%  Similarity=0.004  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975          163 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       163 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~  217 (274)
                      ..+...+.+.+.+ .+|+++.++.++++..+++.+ .+   ...+|+  .+.|+.||+|||-
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            4566677776655 489999999999988765543 22   234663  6889999999994

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=7.5e-07  Score=78.77  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..||+|||+|.|||+||..++ .|.+|+|+||....+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~   39 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR   39 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            369999999999999999997 599999999988755

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.61  E-value=1.9e-06  Score=76.22  Aligned_cols=56  Identities=13%  Similarity=-0.066  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--CCCc-EEee-cEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STGD-TINA-DCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g~-~~~~-d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++++++..+++.+ .|..  .++. ++.+ +.||+|+|-..
T Consensus       218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        218 ALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            356677888899999999999999987655533 3332  3443 5788 99999999544

>PLN02815 L-aspartate oxidase

Probab=98.60  E-value=6.1e-07  Score=79.07  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCcee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEI   49 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~   49 (274)
                      .+||+|||+|.|||+||+.+++ | +|+|+||....++
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg   65 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES   65 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence            4799999999999999999975 8 9999999887664

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.60  E-value=7.7e-07  Score=78.61  Aligned_cols=54  Identities=15%  Similarity=0.012  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eE---ECCCCc--EEeecEEEEcccC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~  217 (274)
                      .+...+.+.+.+ .+++++.++.++++..+++.+ .+   ...+|+  .+.|+.||+|||-
T Consensus       134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  194 (582)
T PRK09231        134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  194 (582)
T ss_pred             HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence            455666666655 489999999999988665543 22   345663  7899999999994

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.58  E-value=4.1e-07  Score=75.92  Aligned_cols=35  Identities=29%  Similarity=0.518  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCcee
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI   49 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~   49 (274)
                      ||+|||||+||+++|+.|+ .  |++|+|+|+.+..++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            7999999999999999996 3  999999999886553

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.58  E-value=6.3e-07  Score=80.03  Aligned_cols=52  Identities=15%  Similarity=-0.009  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE---CCCCc--EEeecEEEEccc
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTG  216 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G  216 (274)
                      +...+.+.+.+.||+++.++.+.++..+++.+ .+.   ..+|+  .+.|+.||+|||
T Consensus       160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        160 MLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            45566677788999999999999998665532 332   24564  568999999999

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.57  E-value=9.6e-07  Score=76.90  Aligned_cols=56  Identities=18%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCce-eEEC-CCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLT-STGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~-~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++. ||+++.++.++++..+++.+ .+.. .+++  .+.++.||+|||-.
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            35677777777764 89999999999986555433 3333 2332  58999999999953

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.57  E-value=9.2e-07  Score=73.24  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=33.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~   51 (274)
                      ..+|+|||||+|||+||.+|- . ..+++|+|..+.+|+.-
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence            468999999999999998885 4 67899999999998553

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.56  E-value=6.1e-08  Score=82.84  Aligned_cols=55  Identities=24%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.|.+.+++.|++++.++ |+++..++++  ..|++.+|+++.||.+|=|+|+..
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            467778888899999999886 6666554443  468888999999999999999754

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07208 hypothetical protein; Provisional

Probab=98.54  E-value=9.2e-08  Score=82.87  Aligned_cols=56  Identities=14%  Similarity=0.029  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-e-EEC--CCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-YLT--STGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-v~~--~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.|++|+++++|++|..++++. . +..  .+|+  ++.||.||+++...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            4577888888999999999999999998876643 2 222  3453  68999999998753

>PRK12839 hypothetical protein; Provisional

Probab=98.54  E-value=4.7e-06  Score=73.49  Aligned_cols=40  Identities=23%  Similarity=0.212  Sum_probs=35.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      .++||+|||+|.+|+++|+.++ +|.+|+|+||.+.+|+..
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~   47 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGAT   47 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            4689999999999999999997 599999999998877543

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.54  E-value=1.4e-06  Score=77.11  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      |+|||+|.|||+||..++ .|.+|+|+||...+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            689999999999999997 49999999998744

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.53  E-value=5.5e-07  Score=78.27  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhC-CcEEEcCceeeeeccC-C-CceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISK-KVDVKLGERVNLDSVS-E-GSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~-~-~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++. |+.+..+ .++++..+ + ....|.+.+|..+.|+.||+|||...
T Consensus        97 ~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        97 LYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            3556677777776 7888765 56666443 3 34578888898999999999999774

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.51  E-value=2e-06  Score=73.52  Aligned_cols=64  Identities=19%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEECC-CCcEEeecEEEEccc-CCCCchhhcc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTS-TGDTINADCHFLCTG-KPVGSDWLKD  226 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~~~~d~vv~a~G-~~~~~~~~~~  226 (274)
                      ..+.+.+.+.+++.|++++++++++++..+  ++.+ .+... ++..+.++.||+|+| +..|.+++..
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            457788888899999999999999999765  3333 34433 345899999999999 5555555543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=1.7e-07  Score=78.59  Aligned_cols=39  Identities=33%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      ++|+|+|||+|||+||+.|+ +|++|+|+|+++.+|+...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~   40 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA   40 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceee
Confidence            48999999999999999998 6999999999999996543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.47  E-value=3.4e-06  Score=80.21  Aligned_cols=39  Identities=31%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ...||+|||+|.||++||..++ .|.+|+|+||.+..|+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~  447 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN  447 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            3589999999999999999987 59999999999887754

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.46  E-value=9.9e-08  Score=74.99  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA   56 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~   56 (274)
                      ..|+|||+|.|||+++..+- +|-.|+++|+...+|+.......
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsS   53 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASS   53 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceeccc
Confidence            37999999999999998885 66669999999999876554433

>PLN02268 probable polyamine oxidase

Probab=98.45  E-value=1.9e-07  Score=79.93  Aligned_cols=49  Identities=20%  Similarity=0.179  Sum_probs=40.2

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+. .+++++++++|++|...++.+.|++.+|+++.||.||+|+..
T Consensus       202 ~l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~  250 (435)
T PLN02268        202 PVINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL  250 (435)
T ss_pred             HHHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence            3444443 367899999999999888888888888988999999999864

>PLN02576 protoporphyrinogen oxidase

Probab=98.42  E-value=2.9e-07  Score=80.16  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~   51 (274)
                      .++||+|||||++||++|++|+ . |++|+|+|+++.+|+..
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~   52 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI   52 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence            4579999999999999999997 5 89999999999998653

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.42  E-value=3.6e-06  Score=66.98  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g   48 (274)
                      +.||+|||||-.|++.|++|+     .|.+|+|+|+.+.+.
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt  126 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT  126 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence            579999999999999999996     379999999988654

>PLN02568 polyamine oxidase

Probab=98.42  E-value=3.4e-07  Score=79.81  Aligned_cols=51  Identities=16%  Similarity=0.126  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +.+.+.+.+.  +-.|+++++|+.|..+++.+.|.+.+|+++.||.||+++..
T Consensus       244 Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl  294 (539)
T PLN02568        244 VIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL  294 (539)
T ss_pred             HHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence            3444444432  34689999999999888888899999989999999999863

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.39  E-value=7.3e-07  Score=73.26  Aligned_cols=67  Identities=7%  Similarity=-0.082  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCCCc-hhhccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGS-DWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~-~~~~~~~~  229 (274)
                      ..++..+.+.+++.|.+|.++..|.+|..+++ .+.|++.||+++.+..||..++.+-.. .+++.+-+
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~L  332 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEAL  332 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccC
Confidence            45788889999999999999999999988775 467999999999998888877754333 55555444

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.39  E-value=3.5e-07  Score=75.85  Aligned_cols=38  Identities=16%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ++||+|||||++|+++|..|+ .|.+|+|+|+.+.+|+.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~   39 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGN   39 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence            369999999999999999997 49999999999888863

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.37  E-value=1.1e-05  Score=71.46  Aligned_cols=55  Identities=5%  Similarity=-0.063  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCC---Cc-eeEE---CCCCc--EEeecEEEEcccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSE---GS-DTYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      .....+...+++.+++++.++.++++..++   +. ..+.   ..+|+  .+.|+.||+|||-.
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~  190 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA  190 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence            344455566677778999999999998653   33 2333   23554  57899999999954

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.33  E-value=6.9e-06  Score=66.65  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc---c--------CCcC-----ChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      .+++|..|++.|..+.  ..+.+++++.+.+.   +        .+.+     ...+.+.+.+.+++.|++++. .+|..
T Consensus         5 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   81 (300)
T TIGR01292         5 IIGAGPAGLTAAIYAA--RANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIK   81 (300)
T ss_pred             EECCCHHHHHHHHHHH--HCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEE
Confidence            3567888999999987  45788999887541   0        1222     135667778888889999998 88999


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      ++.+++.+.+.+.+++++.+|.+|+|+|..|..+.+
T Consensus        82 v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i  117 (300)
T TIGR01292        82 VDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGI  117 (300)
T ss_pred             EEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC
Confidence            987777777888888899999999999998764433

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.33  E-value=1.1e-05  Score=67.53  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             ChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCC-ce-eEEC--CCC--cEEeecEEEEccc
Q 023975          162 GPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEG-SD-TYLT--STG--DTINADCHFLCTG  216 (274)
Q Consensus       162 ~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~-~~-~v~~--~~g--~~~~~d~vv~a~G  216 (274)
                      ...+...+.+.+++ .+|+++.++.+.++..+++ .+ ++..  .++  ..+.++.||+|||
T Consensus       132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG  193 (518)
T COG0029         132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATG  193 (518)
T ss_pred             cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence            44566777777765 6999999999999888777 44 4433  222  4789999999999

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.32  E-value=1.3e-06  Score=76.10  Aligned_cols=40  Identities=30%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ..++||+|||||.|||.||..++ +|.+|+|+||....++.
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~   44 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH   44 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence            34689999999999999999998 59999999998876633

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.29  E-value=1.5e-06  Score=73.78  Aligned_cols=99  Identities=19%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeE-EE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAI-NI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~   87 (274)
                      ...+++|||||+.|+-.|..+++ |.+|+|+|+.+.+-..   .        +.+......+.+  ..+.+.....+ ..
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~---~--------D~ei~~~~~~~l~~~gv~i~~~~~v~~~  240 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG---E--------DPEISKELTKQLEKGGVKILLNTKVTAV  240 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc---C--------CHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence            35789999999999999988875 9999999999876521   1        111111111111  12333322222 22


Q ss_pred             e--cC--eEEeCCCe--EEecCEEEEccCCCCCCChhHHH
Q 023975           88 T--EN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTRTE  121 (274)
Q Consensus        88 ~--~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~~~~  121 (274)
                      .  ..  .+.++++.  .+.+|.+++|+|..|+..++..+
T Consensus       241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe  280 (454)
T COG1249         241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLE  280 (454)
T ss_pred             EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChh
Confidence            1  11  35555655  68899999999999998864433

>PTZ00367 squalene epoxidase; Provisional

Probab=98.29  E-value=7.5e-07  Score=77.95  Aligned_cols=34  Identities=26%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..+||+|||||++|+++|+.|++ |++|+|+||..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            45899999999999999999984 99999999975

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.25  E-value=1e-06  Score=75.77  Aligned_cols=56  Identities=14%  Similarity=-0.030  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...++..+++.|..|++++.|++|....+ ...|++.-| .+++..||.|+|++.
T Consensus       187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  187 AGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence            36788899999999999999999999986544 457888888 599999999999876

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=5.3e-07  Score=75.96  Aligned_cols=33  Identities=33%  Similarity=0.373  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      .+||+|||||+||+.||...++ |++++++--+-
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            4899999999999999999986 99999997654

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.24  E-value=1.3e-06  Score=72.87  Aligned_cols=35  Identities=37%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +.||+|||||++|+.+|+.|+ +|++|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            469999999999999999997 59999999976554

>PLN02985 squalene monooxygenase

Probab=98.24  E-value=1.3e-06  Score=75.88  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=31.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..++||+|||||++|+++|..|++ |++|+|+||...
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            346899999999999999999985 999999999753

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.20  E-value=1.7e-06  Score=68.21  Aligned_cols=38  Identities=13%  Similarity=0.320  Sum_probs=34.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~   50 (274)
                      ++|++|||||.+|+.+|..|++ |.+|+|+||.+++|+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN   39 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN   39 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence            4799999999999999998875 9999999999999865

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.16  E-value=2.1e-06  Score=75.95  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      .+..+|+|||||++||++|..|++ |++|+|+||.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            345899999999999999999985 99999999975

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.13  E-value=3.1e-06  Score=75.49  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~   46 (274)
                      ..+||+||||||+||++|..|++  |.+|+|||+.+.
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            36899999999999999999974  899999999864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.11  E-value=3.1e-06  Score=73.81  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~   49 (274)
                      ..+||+|||+| +||+||++++ .|++|+|+||.+..|+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            35899999999 9999999997 5999999999887553

>PLN02529 lysine-specific histone demethylase 1

Probab=98.09  E-value=4e-06  Score=75.17  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=35.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ..++|+|||||++||+||..|+ +|++|+|+|+.+.+|+.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR  198 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence            4589999999999999999997 59999999999998865

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.06  E-value=4.7e-06  Score=68.08  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +.+|+|||||++|+++|..|+ +|++|+|+|+.+.+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            468999999999999999997 59999999997764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.06  E-value=4.9e-06  Score=75.06  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      ...+|+|||||++||++|+.|+ +|++|+|+|+++.+|+..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcc
Confidence            4579999999999999999997 599999999999988653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.05  E-value=3e-05  Score=59.14  Aligned_cols=91  Identities=23%  Similarity=0.266  Sum_probs=60.7

Q ss_pred             ccCCchhhhHHHHhhhhCCCCe-EEEEeCCCccC--------------Cc-C----------------------------
Q 023975          126 YQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRLL--------------EF-I----------------------------  161 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~~--------------~~-~----------------------------  161 (274)
                      +++|.+|+-.|..|.+  .+.. +.++++.+.+.              +. .                            
T Consensus         3 IGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    3 IGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             E--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             ECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            4668888888888874  3666 88888765430              00 0                            


Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ...+.+.+.+.+++.+++++.+++|++++.+++.+.|.+.+++++.||.||+|||..
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~  137 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY  137 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence            012334556677788999999999999999988899999999889999999999963

...

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.04  E-value=2.5e-05  Score=60.90  Aligned_cols=48  Identities=25%  Similarity=0.420  Sum_probs=38.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C------CcEEEEcCCCCceeeccceeeecC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S------ADVTLIDPKEYFEITWASLRAMVE   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g------~~v~vie~~~~~g~~~~~~~~~~~   59 (274)
                      ..++|+|+|||+.|.++|++|.+ +      +.+++||+....++..+....++.
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa   63 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA   63 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH
Confidence            34899999999999999999962 3      789999999887766665555443

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.03  E-value=1.3e-05  Score=68.73  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEE-EeeEEEecC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN   90 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (274)
                      ..+++|||||+.|+-+|..|+ .|.+|+++++.+.+....       .+...........  ..++++.. .....++..
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~-------d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~  218 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM-------DADMNQPILDELD--KREIPYRLNEEIDAINGN  218 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-------CHHHHHHHHHHHH--hcCCEEEECCeEEEEeCC
Confidence            368999999999999999997 499999999987654211       1100000000000  01344432 223334444


Q ss_pred             eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           91 EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        91 ~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .+.++++..+.+|.+++|+|..|..+.
T Consensus       219 ~v~~~~g~~~~~D~vl~a~G~~pn~~~  245 (438)
T PRK13512        219 EVTFKSGKVEHYDMIIEGVGTHPNSKF  245 (438)
T ss_pred             EEEECCCCEEEeCEEEECcCCCcChHH
Confidence            566677778999999999999987654

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.01  E-value=1.2e-06  Score=73.53  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM   57 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~   57 (274)
                      ..||+|||||.+|..||.-.+ +|.++.++|+++...++......+
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKL  112 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKL  112 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhh
Confidence            489999999999999998887 899999999999877666544443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.01  E-value=9.3e-06  Score=51.91  Aligned_cols=34  Identities=44%  Similarity=0.695  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      +|+|||||+.|+-+|..|+ .|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            5899999999999999997 599999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.00  E-value=7.2e-06  Score=72.20  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=34.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ..+||+|||+|.+|+++|+.++ .|.+|+||||....|+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~   44 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS   44 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence            3589999999999999999997 49999999999877654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.00  E-value=1.5e-05  Score=68.34  Aligned_cols=96  Identities=20%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+|+|||||++|+.+|..|+ .|.+|+++++.+.+.....       +...........  ..++++... .+..+.  
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~~~~~~l~--~~GI~i~~~~~V~~i~~~  227 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREE-------PSVAALAKQYME--EDGITFLLNAHTTEVKND  227 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCC-------HHHHHHHHHHHH--HcCCEEEcCCEEEEEEec
Confidence            468999999999999999987 5999999999876531110       000000000000  013333321 222222  


Q ss_pred             cC-eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN-EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~-~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .. .+...++.++.+|.+++|+|..|....
T Consensus       228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~  257 (438)
T PRK07251        228 GDQVLVVTEDETYRFDALLYATGRKPNTEP  257 (438)
T ss_pred             CCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence            11 222335678999999999999987654

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.00  E-value=5.9e-06  Score=66.99  Aligned_cols=64  Identities=14%  Similarity=0.071  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhCCcEEEcCceeeeecc--CCCc-eeE--ECCCCc----EEeecEEEEcccCCCCchhhccccc
Q 023975          166 GDKTRDWLISKKVDVKLGERVNLDSV--SEGS-DTY--LTSTGD----TINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       166 ~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~-~~v--~~~~g~----~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ...+...++..|++|++++.|++|..  +++. ..|  ...++.    .+.++.||+|.|....+.+|...++
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            34455666556999999999999944  3332 233  333443    5678999999997665666666555

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.99  E-value=7.1e-06  Score=68.92  Aligned_cols=35  Identities=37%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      .+|+|||||++|+.+|+.|+ +|++|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            48999999999999999997 499999999877643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.99  E-value=2e-05  Score=66.15  Aligned_cols=95  Identities=22%  Similarity=0.355  Sum_probs=58.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (274)
                      .++++|||||+.|+.+|..|. .|.+|+++++.+.+....      ..+...........+  .++++... ....+.. 
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~  212 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL------MPPEVSSRLQHRLTE--MGVHLLLKSQLQGLEKT  212 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh------CCHHHHHHHHHHHHh--CCCEEEECCeEEEEEcc
Confidence            468999999999999999997 599999999987653110      000000000000000  13333321 2222221 


Q ss_pred             -C--eEEeCCCeEEecCEEEEccCCCCCC
Q 023975           90 -N--EVLTAEGRRVVYDYLVIATGHKDPV  115 (274)
Q Consensus        90 -~--~v~~~~~~~~~~~~li~a~G~~~~~  115 (274)
                       .  .+.+.++.++.+|.+++|+|..|..
T Consensus       213 ~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        213 DSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             CCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence             1  4566788899999999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.98  E-value=1.7e-05  Score=68.09  Aligned_cols=95  Identities=18%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEE-eeEEEe-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (274)
                      ..+++|||||+.|+-.|..|+ .|.+|+++++.+.+..... .+...+...+.          ..++++... ....+. 
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~----------~~gI~i~~~~~v~~i~~  235 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE----------KEGINVHKLSKPVKVEK  235 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHH----------HcCCEEEcCCEEEEEEE
Confidence            368999999999999999997 5999999999876431110 00000000000          012333211 111111 


Q ss_pred             --c--CeEEeCCC-eEEecCEEEEccCCCCCCCh
Q 023975           89 --E--NEVLTAEG-RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 --~--~~v~~~~~-~~~~~~~li~a~G~~~~~~~  117 (274)
                        .  ..+.++++ ..+.+|.+++++|..|....
T Consensus       236 ~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       236 TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             eCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence              1  13445566 57899999999999988654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.96  E-value=8.2e-06  Score=70.83  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      +||+|||+||+|+++|+.|+ +|++|++||++...++.|.
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~   40 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI   40 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence            69999999999999999997 5999999999998886654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.94  E-value=1.1e-05  Score=66.06  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~   51 (274)
                      +.++|+|+|||++|||+|++|++   ...++|+|+.+.+|+..
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi   52 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI   52 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence            45799999999999999999973   45577799999998543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.94  E-value=2.1e-05  Score=68.12  Aligned_cols=96  Identities=23%  Similarity=0.390  Sum_probs=56.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (274)
                      ..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+....       ....... .....+ ..+++++... +..+.  
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-------~~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~  250 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-------DAELSKE-VARLLK-KLGVRVVTGAKVLGLTLK  250 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-------CHHHHHH-HHHHHH-hcCCEEEeCcEEEEEEEe
Confidence            369999999999999999997 499999999987643110       0000000 000000 0133433221 22222  


Q ss_pred             -cC---eEEeCCC--eEEecCEEEEccCCCCCCCh
Q 023975           89 -EN---EVLTAEG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 -~~---~v~~~~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                       ..   .+...++  .++.+|.+++|+|..|..+.
T Consensus       251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~  285 (472)
T PRK05976        251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG  285 (472)
T ss_pred             cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence             11   1223345  46899999999999987754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.94  E-value=1.9e-05  Score=68.26  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=57.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||||++|+.+|..|+ .|.+|+++|+.+.+...   +    .............+  .++++... .+..+.  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~----~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~  240 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG---E----DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN  240 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC---C----CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence            368999999999999999997 49999999998765311   0    00000000000000  13333322 122221  


Q ss_pred             cC--eEEeCCC--eEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~~~--~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+.+.++  .++.+|.+++|+|..|...
T Consensus       241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             CCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            22  2334455  5789999999999998776

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06116 glutathione reductase; Validated

Probab=97.93  E-value=1.9e-05  Score=67.92  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=58.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+...+.       +...........  ..+++++.. .+..+.  
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~-------~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  237 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFD-------PDIRETLVEEME--KKGIRLHTNAVPKAVEKN  237 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccC-------HHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence            468999999999999999997 4999999998875431110       000000000000  013333221 122221  


Q ss_pred             -cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 -~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                       ..  .+.+.++.++.+|.+++|+|..|....
T Consensus       238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~  269 (450)
T PRK06116        238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG  269 (450)
T ss_pred             CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence             11  355567788999999999999987764

>PRK07846 mycothione reductase; Reviewed

Probab=97.93  E-value=3.1e-05  Score=66.60  Aligned_cols=95  Identities=16%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    .+... ..+....  ..++++... ....+.  
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~  235 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH---L----DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD  235 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence            468999999999999999997 59999999998765311   0    11100 0000000  012333211 122222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.++.++.+|.+++|+|..|..+.
T Consensus       236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  266 (451)
T PRK07846        236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL  266 (451)
T ss_pred             CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence            11  355567778999999999999988765

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.90  E-value=1.4e-05  Score=63.33  Aligned_cols=102  Identities=17%  Similarity=0.116  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCc--EEeecEEEEcccCCCCchhh------cc--cccccc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGD--TINADCHFLCTGKPVGSDWL------KD--TILKDS  232 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~--~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~  232 (274)
                      .+.+.+.+.+++.|+.+..+.+|.+..-.+++++ +.+.+..  .+.+|..|+|+|.--..-+.      .+  ..+++.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~  338 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL  338 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence            4677888999999999999999999887777664 4555554  56899999999953321111      11  111111


Q ss_pred             cCCC-----------------CcEEeCCCcccc----CCCCeEEeccccCCCCC
Q 023975          233 LDTH-----------------GMLMVDENLRVK----GQKNIFAIGDITDIRVS  265 (274)
Q Consensus       233 ~~~~-----------------g~~~v~~~~~~~----~~~~i~~~Gd~~~~~~~  265 (274)
                      -.++                 -++.+|.+++..    ...|+|+||.+.+-.++
T Consensus       339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdp  392 (421)
T COG3075         339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDP  392 (421)
T ss_pred             cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcH
Confidence            1111                 136677776652    25789999999876654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.89  E-value=1.2e-05  Score=73.43  Aligned_cols=34  Identities=32%  Similarity=0.609  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~   47 (274)
                      ++|+||||||+||++|..|+ +  |++|+|+||.+..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            37999999999999999997 3  8999999998863

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.89  E-value=3.8e-05  Score=65.55  Aligned_cols=92  Identities=18%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGR   78 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---------------~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (274)
                      .+++|||||++|+..|..|+               .+.+|+++++.+.+...   +    ..... ....... ...+++
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---~----~~~~~-~~~~~~L-~~~gV~  244 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---F----DQALR-KYGQRRL-RRLGVD  244 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc---C----CHHHH-HHHHHHH-HHCCCE
Confidence            48999999999999998775               26889999998755311   1    00000 0000000 012455


Q ss_pred             EE-EEeeEEEecCeEEeCCCeEEecCEEEEccCCCCC
Q 023975           79 IV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDP  114 (274)
Q Consensus        79 ~~-~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~  114 (274)
                      ++ ......+....+.+++|+++++|.+++++|..|.
T Consensus       245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence            54 3334455566778888989999999999998764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=2.6e-05  Score=67.43  Aligned_cols=96  Identities=22%  Similarity=0.316  Sum_probs=57.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+...........  ..++++... .+..+.  
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~~l~~~l~--~~gV~i~~~~~V~~i~~~  242 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISKLAERALK--KRGIKIKTGAKAKKVEQT  242 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHHHHHHHHH--HcCCEEEeCCEEEEEEEe
Confidence            368999999999999999987 599999999987653111       0000000000000  013343322 122222  


Q ss_pred             cC--eEEeCCC---eEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEG---RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~---~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.++   .++.+|.+++|+|..|....
T Consensus       243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence            11  2334444   67899999999999987654

>PRK02106 choline dehydrogenase; Validated

Probab=97.85  E-value=2.1e-05  Score=69.52  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCC
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEY   46 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~~   46 (274)
                      +...+|++|||+|.+|+.+|..|+  +|.+|+|||+++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            445689999999999999999997  4999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.85  E-value=3.6e-05  Score=66.50  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=58.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      .++++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +    .+...........  ..+++++.. .+..+.  
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---~----d~~~~~~l~~~l~--~~gI~v~~~~~v~~i~~~  245 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF---L----DDEISDALSYHLR--DSGVTIRHNEEVEKVEGG  245 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc---C----CHHHHHHHHHHHH--HcCCEEEECCEEEEEEEe
Confidence            478999999999999999987 59999999998765311   0    1110000000000  013333321 122222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.++.++.+|.+++|+|..|....
T Consensus       246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  276 (461)
T PRK05249        246 DDGVIVHLKSGKKIKADCLLYANGRTGNTDG  276 (461)
T ss_pred             CCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence            12  344566778999999999999987653

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.82  E-value=0.00013  Score=61.60  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=33.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~~   51 (274)
                      +++.-|||+|+|+|++|.+|-     +|-+|+|+|+.+..|+..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl   45 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL   45 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence            367889999999999998883     488999999999887543

>TIGR03452 mycothione_red mycothione reductase

Probab=97.82  E-value=6.4e-05  Score=64.66  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEE-EeeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +    .+.... .+....  ..++.+.. ..+..+.  
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~  238 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH---L----DEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD  238 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc---c----CHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence            468999999999999999997 59999999998765311   1    111000 000000  01233321 1122222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.+++++.+|.+++|+|..|....
T Consensus       239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence            11  344556778999999999999987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.82  E-value=2.3e-05  Score=63.51  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=30.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (274)
                      +...||+|||||.+|.+.|+.|++ |.+|+||||.
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            345899999999999999999986 9999999986

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.82  E-value=3.6e-05  Score=65.80  Aligned_cols=97  Identities=23%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEecC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITEN   90 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   90 (274)
                      ..+|+|||||++|+.+|..|+ .|.+|+++++.+.+...  .+    ....... .....+ ..+++++.. ....+...
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--~~----~~~~~~~-~~~~l~-~~gV~v~~~~~v~~i~~~  208 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--LF----DEEMNQI-VEEELK-KHEINLRLNEEVDSIEGE  208 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--cc----CHHHHHH-HHHHHH-HcCCEEEeCCEEEEEecC
Confidence            368999999999999999997 59999999998765210  00    0000000 000000 013444321 22233322


Q ss_pred             --eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           91 --EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        91 --~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                        .+.+.++.++.+|.+++|+|..|..+.
T Consensus       209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  237 (427)
T TIGR03385       209 ERVKVFTSGGVYQADMVILATGIKPNSEL  237 (427)
T ss_pred             CCEEEEcCCCEEEeCEEEECCCccCCHHH
Confidence              235567778999999999999877543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN03000 amine oxidase

Probab=97.81  E-value=2.2e-05  Score=71.13  Aligned_cols=41  Identities=24%  Similarity=0.386  Sum_probs=36.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      ...+|+|||||++||++|+.|+ .|++|+|+|+.+.+|+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcc
Confidence            3589999999999999999997 4999999999999986543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.79  E-value=3.8e-05  Score=65.24  Aligned_cols=92  Identities=20%  Similarity=0.313  Sum_probs=60.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc--ceeeecCCccccceeeeccccccccEEE-EEeeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--SLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ +|++|+++|+.+.++....  .+...+...+..          .++++. ......++
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~----------~gi~~~~~~~~~~i~  205 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK----------YGVELLLGTKVVGVE  205 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH----------CCcEEEeCCceEEEE
Confidence            379999999999999999997 5999999999998874432  111111111100          123332 12223333


Q ss_pred             cC----e---EEeCCCeEEecCEEEEccCCCCC
Q 023975           89 EN----E---VLTAEGRRVVYDYLVIATGHKDP  114 (274)
Q Consensus        89 ~~----~---v~~~~~~~~~~~~li~a~G~~~~  114 (274)
                      .+    .   +...++..+++|.+++++|..|.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            22    1   46677888999999999999986

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.79  E-value=0.00026  Score=62.09  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=74.4

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCC--cc--------CC----cCChhHHHHHHHHHHhCCcEEEcCceee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS--RL--------LE----FIGPKAGDKTRDWLISKKVDVKLGERVN  187 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~--~~--------~~----~~~~~~~~~~~~~~~~~gv~i~~~~~v~  187 (274)
                      .+..+++|+.|+..|..+.  ..|.++.++....  ..        ++    .....+.+.+.+.+++.|++++.++++.
T Consensus       213 dvvIIGgGpaGl~aA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        213 DVLVVGGGPAGAAAAIYAA--RKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            3445677999999999998  5688888775421  00        00    1234567778888888999999999999


Q ss_pred             eeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          188 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       188 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      .+...++...+.+.+|+++.+|.||+|+|..+..
T Consensus       291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAAGLIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            9987766777888888899999999999987643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.78  E-value=5e-05  Score=65.30  Aligned_cols=95  Identities=22%  Similarity=0.312  Sum_probs=57.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....       .+..... .....+ ..++++... .+..+.  
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~-l~~~l~-~~gV~i~~~~~v~~i~~~  236 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGF-------DDDMRAL-LARNME-GRGIRIHPQTSLTSITKT  236 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCccc-------CHHHHHH-HHHHHH-HCCCEEEeCCEEEEEEEc
Confidence            468999999999999999887 599999999887643111       0000000 000000 013343322 122222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+.+.++..+.+|.+++|+|..|...
T Consensus       237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       237 DDGLKVTLSHGEEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             CCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence            11  34555777899999999999988764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.78  E-value=5.3e-05  Score=65.62  Aligned_cols=95  Identities=19%  Similarity=0.272  Sum_probs=56.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEEe-eEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (274)
                      ..+++|||||+.|+.+|..++    .|.+|+|+|+.+.+..... .+...+...+.          ..++++.... ...
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~----------~~GI~i~~~~~v~~  256 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLR----------ANGINIMTNENPAK  256 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHH----------HcCCEEEcCCEEEE
Confidence            368999999999999996553    3899999999876531110 00000000000          0123332211 112


Q ss_pred             Ee---c--CeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           87 IT---E--NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        87 ~~---~--~~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      +.   .  ..+.+.++.++++|.+++|+|..|....
T Consensus       257 i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       257 VTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             EEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence            21   1  1345556778999999999999987654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.77  E-value=0.00027  Score=61.89  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCC--ccC-----------C-cCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL-----------E-FIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~--~~~-----------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      +..+++|+.|+..|..+.  ..+.+++++....  .+.           + ...+.+.+.+.+.+++.|++++.+++|.+
T Consensus       215 VvIIGgGpAGl~AA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~  292 (515)
T TIGR03140       215 VLVVGGGPAGAAAAIYAA--RKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKK  292 (515)
T ss_pred             EEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEE
Confidence            344566899999999988  5788888875311  110           0 12345667777888889999999999999


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +..+++...+.+.+|+.+.+|.+|+|+|..+..
T Consensus       293 I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       293 IETEDGLIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEecCCeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            987666677888888899999999999987643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02976 amine oxidase

Probab=97.76  E-value=3e-05  Score=73.23  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      ..++|+|||||++|+++|+.|+ .|++|+|+|+.+.+|+.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri  732 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV  732 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence            4589999999999999999997 599999999999888654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.76  E-value=5.6e-05  Score=65.22  Aligned_cols=96  Identities=17%  Similarity=0.290  Sum_probs=56.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (274)
                      ..+++|||||++|+.+|..|+ .|.+|+++++.+.+....       .+...........+  .++++.... ...++  
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~~l~~~L~~--~GI~i~~~~~V~~i~~~  240 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAHILREKLEN--DGVKIFTGAALKGLNSY  240 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHHHHHHHHHH--CCCEEEECCEEEEEEEc
Confidence            368999999999999999887 499999999987653111       00000000000000  134443221 22222  


Q ss_pred             cCeEEe-CCC--eEEecCEEEEccCCCCCCCh
Q 023975           89 ENEVLT-AEG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~~v~~-~~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                      ...+.. .++  .++.+|.+++|+|..|....
T Consensus       241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence            122222 233  36899999999999987654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=2.3e-05  Score=65.17  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=29.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (274)
                      ...|||+|||||.||..||.+.++ |.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            456899999999999999988886 9999998765

>PLN02507 glutathione reductase

Probab=97.74  E-value=6.5e-05  Score=65.39  Aligned_cols=95  Identities=27%  Similarity=0.330  Sum_probs=57.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec-cceeeecCCccccceeeeccccccccEEEEE-eeEEEe-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   88 (274)
                      ..+++|||+|+.|+-.|..|+ .|.+|+|+++.+.+...+ ..+...+...+.          ..++++... .+..+. 
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~----------~~GI~i~~~~~V~~i~~  272 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLE----------GRGINLHPRTNLTQLTK  272 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHH----------hCCCEEEeCCEEEEEEE
Confidence            368999999999999998887 499999999876532110 000000000000          012333222 111221 


Q ss_pred             -cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 -~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                       ..  .+.+.++.++.+|.+++++|..|....
T Consensus       273 ~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        273 TEGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             eCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence             11  345567778999999999999987754

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.73  E-value=6.9e-05  Score=64.78  Aligned_cols=94  Identities=19%  Similarity=0.282  Sum_probs=57.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc-eeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      .+++|||+|..|+.+|..|+ .|.+|+++++.+.+...... ....+...+.          ..++++... ....+.  
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~----------~~gV~i~~~~~v~~v~~~  247 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFA----------RRGMTVLKRSRAESVERT  247 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHH----------HCCcEEEcCCEEEEEEEe
Confidence            68999999999999999987 59999999987765321100 0000000000          013333322 112221  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.+++++.+|.+++++|..|....
T Consensus       248 ~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~  278 (466)
T PRK07845        248 GDGVVVTLTDGRTVEGSHALMAVGSVPNTAG  278 (466)
T ss_pred             CCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence            11  345567788999999999999987654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.73  E-value=3.7e-05  Score=71.56  Aligned_cols=35  Identities=34%  Similarity=0.553  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+||+|||||.|||+||..++ .|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            4589999999999999999997 5999999999764

>PRK06370 mercuric reductase; Validated

Probab=97.73  E-value=9.2e-05  Score=64.00  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE-   89 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-   89 (274)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+.....       +.... ......+ ..++++... .+..+.. 
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~-------~~~~~-~l~~~l~-~~GV~i~~~~~V~~i~~~  241 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRED-------EDVAA-AVREILE-REGIDVRLNAECIRVERD  241 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccC-------HHHHH-HHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence            479999999999999999997 5999999999876542110       00000 0000000 013343322 2222321 


Q ss_pred             -C--eEEe---CCCeEEecCEEEEccCCCCCCC
Q 023975           90 -N--EVLT---AEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        90 -~--~v~~---~~~~~~~~~~li~a~G~~~~~~  116 (274)
                       .  .+..   .++.++.+|.+++|+|..|...
T Consensus       242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence             1  2222   2345789999999999998765

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.71  E-value=0.0019  Score=53.83  Aligned_cols=66  Identities=20%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             eCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC-cEEeecEEEEcccCCC
Q 023975          152 HKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV  219 (274)
Q Consensus       152 ~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~  219 (274)
                      .++.+++|  .-...+.+.+...+++.||+++++++|++|+  ++...+.+.++ ..+.||.||+|||-.+
T Consensus        73 e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        73 GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            34455666  3345788899999999999999999999992  33466666443 4699999999999644

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.71  E-value=6.6e-05  Score=62.52  Aligned_cols=90  Identities=20%  Similarity=0.313  Sum_probs=60.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh----c--C--------CcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--ccc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ----F--S--------ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNG   77 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~----~--g--------~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   77 (274)
                      .+|+|||||+.|...|-.|+    +  .        .+|+|+|+.+.+-....           .+......+.+  .++
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~-----------~~l~~~a~~~L~~~GV  224 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFP-----------PKLSKYAERALEKLGV  224 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCC-----------HHHHHHHHHHHHHCCC
Confidence            47999999999999997775    1  1        38999999887642111           11111111112  255


Q ss_pred             EEEE-EeeEEEecCeEEeCCCe-EEecCEEEEccCCCCC
Q 023975           78 RIVA-SPAINITENEVLTAEGR-RVVYDYLVIATGHKDP  114 (274)
Q Consensus        78 ~~~~-~~~~~~~~~~v~~~~~~-~~~~~~li~a~G~~~~  114 (274)
                      ++.. ..+..++++.+.++++. +++++.+|+++|.++.
T Consensus       225 ~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~  263 (405)
T COG1252         225 EVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS  263 (405)
T ss_pred             EEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence            5543 34557788888888887 4999999999998844

>TIGR02053 MerA mercuric reductase

Probab=97.70  E-value=7.9e-05  Score=64.44  Aligned_cols=96  Identities=21%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...+       .+..... ...... ..+++++... +..+.  
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~-l~~~l~-~~gV~i~~~~~V~~i~~~  236 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISAA-VEEALA-EEGIEVVTSAQVKAVSVR  236 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHHH-HHHHHH-HcCCEEEcCcEEEEEEEc
Confidence            368999999999999999997 599999999987653111       0000000 000000 0133333221 22222  


Q ss_pred             cC--eEEeC---CCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTA---EGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~---~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+.   ++.++.+|.+++|+|..|....
T Consensus       237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~  270 (463)
T TIGR02053       237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTDG  270 (463)
T ss_pred             CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence            11  22222   2357999999999999987653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.67  E-value=0.00041  Score=58.75  Aligned_cols=96  Identities=13%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC---CcCChhHH-----H----HHHHHHHhCCcEEEcCceeeeec
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---EFIGPKAG-----D----KTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~-----~----~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      +-.+++|..|+.+|..|.+..+..+++++.+.+.+.   +.....+.     +    .-.+.+.+.|++++.++.|..+.
T Consensus         6 vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id   85 (396)
T PRK09754          6 IIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLG   85 (396)
T ss_pred             EEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEE
Confidence            445677888999999998655556899998765421   11111110     0    01234567899999999998886


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.  ..+.+++|+++.+|.+|+|||..|.
T Consensus        86 ~~~--~~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         86 RDT--RELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             CCC--CEEEECCCCEEEcCEEEEccCCCCC
Confidence            543  4566778889999999999998874

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=0.0001  Score=63.89  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+....       .+...........  ..++++... .+..+.  
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~--~~gi~i~~~~~v~~i~~~  253 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFT--KQGLDIHLGVKIGEIKTG  253 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHH--HcCcEEEeCcEEEEEEEc
Confidence            369999999999999999887 499999999987653110       0000000000000  013333322 222222  


Q ss_pred             cC--eEEeCC--C--eEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAE--G--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~--~--~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+...+  +  ..+.+|.+++++|..|..+.
T Consensus       254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~  288 (475)
T PRK06327        254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG  288 (475)
T ss_pred             CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence            11  233222  2  46899999999999988764

>PTZ00058 glutathione reductase; Provisional

Probab=97.65  E-value=0.0001  Score=64.72  Aligned_cols=96  Identities=14%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEEe-eEEEec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE   89 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   89 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+..... .+...+...+.        +  .++++.... ...+..
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~--------~--~GV~i~~~~~V~~I~~  306 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMK--------K--NNINIITHANVEEIEK  306 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHH--------H--CCCEEEeCCEEEEEEe
Confidence            478999999999999999987 4999999999875431110 00000000000        0  123332111 111211


Q ss_pred             ----C-eEEe-CCCeEEecCEEEEccCCCCCCChh
Q 023975           90 ----N-EVLT-AEGRRVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        90 ----~-~v~~-~~~~~~~~~~li~a~G~~~~~~~~  118 (274)
                          . .+.. .++.++.+|.+++|+|..|....+
T Consensus       307 ~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L  341 (561)
T PTZ00058        307 VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDL  341 (561)
T ss_pred             cCCCcEEEEECCCCEEEECCEEEECcCCCCCcccc
Confidence                1 1222 334579999999999998876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.65  E-value=0.00013  Score=63.14  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  205 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL  205 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            468999999999999999987 499999999987654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.64  E-value=0.00012  Score=63.24  Aligned_cols=96  Identities=20%  Similarity=0.243  Sum_probs=56.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++|+.+.+.....       +...........  ..+++++.. .+..+.  
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d-------~~~~~~l~~~l~--~~gV~i~~~~~v~~i~~~  242 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNED-------AEVSKEIAKQYK--KLGVKILTGTKVESIDDN  242 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccC-------HHHHHHHHHHHH--HCCCEEEECCEEEEEEEe
Confidence            368999999999999999997 5999999998765431110       000000000000  013343322 122222  


Q ss_pred             cC--eEEe--CCC--eEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLT--AEG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~--~~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+  .++  .++.+|.+++|+|..|....
T Consensus       243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG  277 (466)
T ss_pred             CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence            11  1222  245  46899999999999987653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.63  E-value=0.00011  Score=63.61  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=31.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      .+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            68999999999999999987 599999999987653

>PRK14694 putative mercuric reductase; Provisional

Probab=97.63  E-value=0.00019  Score=62.21  Aligned_cols=94  Identities=17%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++...+..    .    .+...........  ..++++... ....+.  
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~----~----~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~  247 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ----E----DPAVGEAIEAAFR--REGIEVLKQTQASEVDYN  247 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC----C----CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence            368999999999999999987 5999999997543321    0    0100000000000  013444332 222222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+++ .++.+|.+++|+|..|....
T Consensus       248 ~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        248 GREFILETNA-GTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             CCEEEEEECC-CEEEeCEEEEccCCCCCcCC
Confidence            22  233333 46999999999999987654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.62  E-value=0.00042  Score=59.66  Aligned_cols=98  Identities=19%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc------CCcCC----h---hHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEFIG----P---KAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~------~~~~~----~---~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      .+++|..|+.+|..+.+..+..+++++.+++.+      ++...    .   .+.....+.+++.|+++..++.|..+..
T Consensus         5 IIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~   84 (444)
T PRK09564          5 IIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDA   84 (444)
T ss_pred             EECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEEC
Confidence            466788899999988754445689999988753      11110    1   1122234567788999999999999987


Q ss_pred             CCCceeEEC-CCCcEEe--ecEEEEcccCCCCch
Q 023975          192 SEGSDTYLT-STGDTIN--ADCHFLCTGKPVGSD  222 (274)
Q Consensus       192 ~~~~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~  222 (274)
                      +++.+.+.. .+++.+.  +|.+|+|||..|..+
T Consensus        85 ~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         85 KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            766655543 2355666  999999999987644

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.59  E-value=0.00014  Score=63.32  Aligned_cols=94  Identities=20%  Similarity=0.222  Sum_probs=55.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEe---
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT---   88 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---   88 (274)
                      .+++|||||+.|+.+|..|+ .|.+|+++++...+......+...+...+        .  ..+++++... ...+.   
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l--------~--~~GV~i~~~~~v~~v~~~~  252 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYM--------K--EQGTLFLEGVVPINIEKMD  252 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHH--------H--HcCCEEEcCCeEEEEEEcC
Confidence            58999999999999999987 59999999874322100000000000000        0  0123332221 11111   


Q ss_pred             cC-eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN-EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~-~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .. .+.+.++.++.+|.+++++|..|....
T Consensus       253 ~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        253 DKIKVLFSDGTTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             CeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence            11 345556778899999999999987654

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.56  E-value=9.5e-05  Score=64.89  Aligned_cols=62  Identities=15%  Similarity=0.085  Sum_probs=43.9

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCcee---EECCCC---c-EEeecEEEEcccCCCCchhhccccc
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTG---D-TINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g---~-~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      .+...++..++.+.+++.++.+..++++.+   +...++   + ...++.||++.|...++.++...+.
T Consensus       208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi  276 (542)
T COG2303         208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI  276 (542)
T ss_pred             cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence            344456777899999999999998877543   333333   2 3578999999998876666655443

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.54  E-value=0.0002  Score=61.94  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++|+.+.+
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i  209 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI  209 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            478999999999999999887 59999999987765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.51  E-value=0.00052  Score=63.14  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=69.0

Q ss_pred             ccCCchhhhHHHHhhhhC-CCCeEEEEeCCCccC-C--cCCh---------hHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          126 YQAGPTGVELAGEIAVDF-PEKKVTLVHKGSRLL-E--FIGP---------KAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~-~~~~v~~~~~~~~~~-~--~~~~---------~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      +++|..|+..|..+.... .+.+++++.+.+.+. .  ....         .+.....+.+++.|++++.++.|+.+..+
T Consensus         4 IG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~   83 (785)
T TIGR02374         4 VGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQIDTD   83 (785)
T ss_pred             ECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECC
Confidence            567888999988876433 456899999887642 1  1111         01111245677889999999999998754


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                        ...|.+.+|+++.+|.+|+|||..|..+.++
T Consensus        84 --~k~V~~~~g~~~~yD~LVlATGs~p~~p~ip  114 (785)
T TIGR02374        84 --QKQVITDAGRTLSYDKLILATGSYPFILPIP  114 (785)
T ss_pred             --CCEEEECCCcEeeCCEEEECCCCCcCCCCCC
Confidence              3467778888999999999999987654333

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.49  E-value=0.00058  Score=57.16  Aligned_cols=97  Identities=13%  Similarity=0.028  Sum_probs=65.8

Q ss_pred             HccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCC-cCC----------hhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          125 QYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLE-FIG----------PKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      .+++|..|+..|..+..+ .+..+++++.+++...- ...          ..+...+.+.+++.|++++.+ +|+.+..+
T Consensus         4 IiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~   82 (364)
T TIGR03169         4 LIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPD   82 (364)
T ss_pred             EECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecc
Confidence            356677888888887532 34679999988765311 111          112223445567789999875 78888655


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      ++  .|.+++|+++.+|.+|+|||..+..+.+
T Consensus        83 ~~--~V~~~~g~~~~yD~LviAtG~~~~~~~i  112 (364)
T TIGR03169        83 RR--KVLLANRPPLSYDVLSLDVGSTTPLSGV  112 (364)
T ss_pred             cC--EEEECCCCcccccEEEEccCCCCCCCCC
Confidence            43  6777888889999999999988765433

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.47  E-value=0.00034  Score=58.50  Aligned_cols=97  Identities=22%  Similarity=0.305  Sum_probs=65.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEEEEeeE-EEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAI-NIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~   88 (274)
                      ...|+++|+|..|+-+|..|. ++.+|+++++.+.+-.      .+..    ........+++.  .++++..+.+ .+.
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~lf~----~~i~~~~~~y~e~kgVk~~~~t~~s~l~  282 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RLFG----PSIGQFYEDYYENKGVKFYLGTVVSSLE  282 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hhhh----HHHHHHHHHHHHhcCeEEEEecceeecc
Confidence            568999999999999999997 6999999999876431      0111    111122223332  3455443332 222


Q ss_pred             c----C--eEEeCCCeEEecCEEEEccCCCCCCChhH
Q 023975           89 E----N--EVLTAEGRRVVYDYLVIATGHKDPVPKTR  119 (274)
Q Consensus        89 ~----~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~  119 (274)
                      .    +  .|.+.+++++.+|.+++.+|..|..+...
T Consensus       283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             cCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence            1    1  67788999999999999999998876644

>PLN02785 Protein HOTHEAD

Probab=97.43  E-value=0.00018  Score=63.71  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      .||++|||||.+|+.+|..|..+.+|+|||++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence            5999999999999999999987899999999864

>PLN02546 glutathione reductase

Probab=97.43  E-value=0.00027  Score=62.16  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ..+|+|||||+.|+-.|..|+ .|.+|+++++.+.+
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i  287 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV  287 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence            469999999999999999987 49999999987754

>PRK13748 putative mercuric reductase; Provisional

Probab=97.42  E-value=0.00043  Score=61.44  Aligned_cols=94  Identities=20%  Similarity=0.328  Sum_probs=54.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+-+|..|+ .|.+|+|+++...+..    .    .+...........  ..++++... ....+.  
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~l~~~l~--~~gI~i~~~~~v~~i~~~  339 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEAVTAAFR--AEGIEVLEHTQASQVAHV  339 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHHHHHHHH--HCCCEEEcCCEEEEEEec
Confidence            368999999999999999987 4999999998543211    0    0100000000000  013333221 112221  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.++++ .+.+|.+++|+|..|....
T Consensus       340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence            11  2333344 6899999999999987653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.42  E-value=0.00059  Score=58.75  Aligned_cols=89  Identities=22%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEE-ec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI-TE   89 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   89 (274)
                      ..++|+|||+|.+|+-.|..|.. +.+|+++.+......    ......+   ..          ++. .......+ ..
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~----~~~~~~~---~~----------~v~-~~~~I~~~~~~  264 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT----YEKLPVP---QN----------NLW-MHSEIDTAHED  264 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc----cccCcCC---CC----------ceE-ECCcccceecC
Confidence            35789999999999999999985 789999998653210    0000000   00          000 00001111 12


Q ss_pred             CeEEeCCCeEEecCEEEEccCCCCCCChh
Q 023975           90 NEVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        90 ~~v~~~~~~~~~~~~li~a~G~~~~~~~~  118 (274)
                      ..+.+.+|..+.+|.+|+|||..+..|-+
T Consensus       265 g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL  293 (461)
T PLN02172        265 GSIVFKNGKVVYADTIVHCTGYKYHFPFL  293 (461)
T ss_pred             CeEEECCCCCccCCEEEECCcCCcccccc
Confidence            35778889889999999999998766553

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.38  E-value=0.0011  Score=61.20  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=69.2

Q ss_pred             HHHHccCCchhhhHHHHhhhhC--CCCeEEEEeCCCccC------C-cCCh----hHHHHHHHHHHhCCcEEEcCceeee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDF--PEKKVTLVHKGSRLL------E-FIGP----KAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~--~~~~v~~~~~~~~~~------~-~~~~----~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      ++..+++|..|+..+..+.+..  .+.+++++.+.+.+.      + .+..    .+.....+.+++.|++++.++.|..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~~   84 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAIT   84 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEEE
Confidence            3445677888888888886432  356899998887642      0 0101    1111123456778999999999988


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      +..+  ...|.+.+|+++.+|.+|+|||..|..+.+
T Consensus        85 Id~~--~~~V~~~~G~~i~yD~LVIATGs~p~~p~i  118 (847)
T PRK14989         85 INRQ--EKVIHSSAGRTVFYDKLIMATGSYPWIPPI  118 (847)
T ss_pred             EeCC--CcEEEECCCcEEECCEEEECCCCCcCCCCC
Confidence            8643  345677888899999999999998765433

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.37  E-value=0.00042  Score=59.54  Aligned_cols=95  Identities=20%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.....       +..... +....+ ..++++... ....+.  
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~-------~~~~~~-l~~~l~-~~gV~v~~~~~v~~i~~~  228 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED-------RDIADN-IATILR-DQGVDIILNAHVERISHH  228 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC-------HHHHHH-HHHHHH-hCCCEEEeCCEEEEEEEc
Confidence            368999999999999999997 5999999999765431110       000000 000000 013333321 122222  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+..+++ ++.+|.+++|+|..|....
T Consensus       229 ~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~  258 (441)
T PRK08010        229 ENQVQVHSEHA-QLAVDALLIASGRQPATAS  258 (441)
T ss_pred             CCEEEEEEcCC-eEEeCEEEEeecCCcCCCC
Confidence            11  2333344 5889999999999987653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.36  E-value=0.00046  Score=59.95  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..+++|||||+.|+-+|..|+ .|.+|+++++.
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            358999999999999999997 59999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01810 betA choline dehydrogenase

Probab=97.34  E-value=0.00021  Score=62.87  Aligned_cols=61  Identities=11%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             HHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCC-Cc---EEeecEEEEcccCCCCchhhccccc
Q 023975          169 TRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTST-GD---TINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       169 ~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~-g~---~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      +....++.|++|++++.|.+|..+++. ..|++.+ ++   .+.++.||+|.|..-.+.+|...|+
T Consensus       200 l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI  265 (532)
T TIGR01810       200 LHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI  265 (532)
T ss_pred             hhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence            334444678999999999999876553 3454432 22   3589999999997655666655444

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.30  E-value=6e-05  Score=56.14  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g   48 (274)
                      ..||+|||+|.+||++||.+.   +..+|.+||.+-.+|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG  114 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG  114 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence            369999999999999999996   389999999987765

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.30  E-value=0.0004  Score=55.60  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+||+|||+|.+||.+|.+|+ +|.+|+++|++..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            589999999999999999998 6999999998764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.27  E-value=0.00016  Score=58.72  Aligned_cols=101  Identities=15%  Similarity=0.210  Sum_probs=60.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEe-eEEEec-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE-   89 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-   89 (274)
                      .++++|||||..||..+-...+ |.+||++|-.+.++..   +...+...+..-...      +++.|...+ +..... 
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---mD~Eisk~~qr~L~k------QgikF~l~tkv~~a~~~  281 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---MDGEISKAFQRVLQK------QGIKFKLGTKVTSATRN  281 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---cCHHHHHHHHHHHHh------cCceeEeccEEEEeecc
Confidence            4789999999999999977765 9999999998888743   211111111000000      122332111 111111 


Q ss_pred             -C---eEEeC-----CCeEEecCEEEEccCCCCCCChhHHHH
Q 023975           90 -N---EVLTA-----EGRRVVYDYLVIATGHKDPVPKTRTER  122 (274)
Q Consensus        90 -~---~v~~~-----~~~~~~~~~li~a~G~~~~~~~~~~~~  122 (274)
                       .   .+..+     ...++++|.+++++|.+|...++..+.
T Consensus       282 ~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~  323 (506)
T KOG1335|consen  282 GDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEK  323 (506)
T ss_pred             CCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhh
Confidence             1   22221     224788999999999999988765544

>PRK14727 putative mercuric reductase; Provisional

Probab=97.26  E-value=0.001  Score=57.81  Aligned_cols=94  Identities=18%  Similarity=0.271  Sum_probs=54.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+..|..|+ .|.+|+++++...+..    .    .+...........  ..+++++.. .+..+.  
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~  257 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLGETLTACFE--KEGIEVLNNTQASLVEHD  257 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHHHHHHHHHH--hCCCEEEcCcEEEEEEEe
Confidence            368999999999999999987 5999999997532211    0    0000000000000  013333321 111221  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+..+++ ++.+|.+++|+|..|....
T Consensus       258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        258 DNGFVLTTGHG-ELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             CCEEEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence            12  2334444 6889999999999987653

>PRK10262 thioredoxin reductase; Provisional

Probab=97.25  E-value=0.00075  Score=55.42  Aligned_cols=35  Identities=37%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      ..+|+|||+|..|+.+|..|++ +.+|+++++.+.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            4699999999999999999974 8999999997754

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.24  E-value=0.00065  Score=60.84  Aligned_cols=36  Identities=11%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+|+|||||+.|+..|..|+ .|.+|+++|+.+.+.
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll  348 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL  348 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence            368999999999999998887 599999999987654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.04  E-value=0.00036  Score=57.57  Aligned_cols=90  Identities=27%  Similarity=0.338  Sum_probs=53.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VN   76 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---------------~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   76 (274)
                      ..++||||||.|+..|.+|+               +-.+|+++|..+..-..+.           .......++.+  .+
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFd-----------krl~~yae~~f~~~~  287 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFD-----------KRLVEYAENQFVRDG  287 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHH-----------HHHHHHHHHHhhhcc
Confidence            57999999999999998886               1358999999875431110           00000111111  13


Q ss_pred             cEEEEE-eeEEEecCeEEeC--CC--eEEecCEEEEccCCCCC
Q 023975           77 GRIVAS-PAINITENEVLTA--EG--RRVVYDYLVIATGHKDP  114 (274)
Q Consensus        77 ~~~~~~-~~~~~~~~~v~~~--~~--~~~~~~~li~a~G~~~~  114 (274)
                      +++... .+..++.+.+...  +|  ..++|--++.+||..+.
T Consensus       288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence            444333 2334444433333  33  57899999999998744

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.00  E-value=0.0082  Score=53.22  Aligned_cols=94  Identities=15%  Similarity=0.067  Sum_probs=65.4

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc-----------CCc----CChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL-----------LEF----IGPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      .+++|..|+..|..+.  ..+.+++++.+...-           .+.    ....+.+.+.+.+++.|+++. +++|..+
T Consensus         9 IIGgGpAGL~AA~~la--r~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i   85 (555)
T TIGR03143         9 IIGGGPAGLSAGIYAG--RAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDV   85 (555)
T ss_pred             EECCCHHHHHHHHHHH--HCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEE
Confidence            4566778888888887  457888888865310           011    112456667777788899985 6778888


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      ..+++...+.+.++ .+.+|.+|+|||..|...
T Consensus        86 ~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        86 DFDGDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EecCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            76555456666665 689999999999987643

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.98  E-value=0.0014  Score=55.23  Aligned_cols=56  Identities=13%  Similarity=0.140  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++ |++++.+++|.+++.+++.+.+++++|+.+.||.||+|+|...
T Consensus       135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~  190 (381)
T TIGR03197       135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA  190 (381)
T ss_pred             HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence            4577888888888 9999999999999877777888888888899999999999764

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.98  E-value=0.0008  Score=56.97  Aligned_cols=58  Identities=10%  Similarity=-0.093  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .++.+.+-+...-.|....+++.|.++..++++ ..-..++|+++.|+.||....+.|.
T Consensus       232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~  290 (438)
T PF00996_consen  232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE  290 (438)
T ss_dssp             THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred             ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence            368888888888899999999999999875433 2222358889999999988887763

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.91  E-value=0.0012  Score=57.60  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCCc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEYF   47 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~~   47 (274)
                      ...||.+|||||-||...|..|.+  .++|+|+|++...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            346999999999999999999985  6999999998765

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.87  E-value=0.002  Score=60.21  Aligned_cols=91  Identities=15%  Similarity=-0.039  Sum_probs=67.9

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|+.|+..|..|.  ..|.+|+++.+.+.+..         ..+..+.+...+.+++.|+++++++.+.   
T Consensus       306 gkkVaVIGsGPAGLsaA~~La--r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---  380 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLA--VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---  380 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHH--HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---
Confidence            466777888999999999998  67899999998765322         1234556666777888999999987652   


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCC-CC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKP-VG  220 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~-~~  220 (274)
                           ..+.+++.....+|+||+|||.. |.
T Consensus       381 -----~dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        381 -----KTATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -----cEEeHHHhccccCCEEEEeCCCCCCC
Confidence                 23555555556799999999984 53

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.72  E-value=0.0018  Score=53.31  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~   44 (274)
                      .+||+|+||||+|++.|..|+     ...+|+++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            689999999999999999886     36799999987

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.71  E-value=0.0045  Score=51.07  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=47.6

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ...+...+.+.+++.|++++.+++|++++.+++.+ .|.+.+| ++.||.||+|+|...
T Consensus       136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~  193 (337)
T TIGR02352       136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA  193 (337)
T ss_pred             hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence            35678888899999999999999999998776654 4677777 799999999999654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0028  Score=55.13  Aligned_cols=33  Identities=42%  Similarity=0.563  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|||+|.+|+++|..|+ +|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999997 599999999765

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.67  E-value=0.0016  Score=49.39  Aligned_cols=136  Identities=29%  Similarity=0.341  Sum_probs=93.8

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---cCC--------h---hHH--H--HHHHHHHhCCcEEEcCcee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIG--------P---KAG--D--KTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---~~~--------~---~~~--~--~~~~~~~~~gv~i~~~~~v  186 (274)
                      .+++|..|+.+|..+.  ..+.++.++.+.+....   ...        .   ...  .  .+.+.+...++++..+.++
T Consensus         4 IIGgG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   81 (201)
T PF07992_consen    4 IIGGGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKV   81 (201)
T ss_dssp             EESSSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTE
T ss_pred             EEecHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeecccc
Confidence            3567889999999998  67899999976553210   000        0   001  0  3334456789999988999


Q ss_pred             eeeccCCCce-----eE---ECCCCcEEeecEEEEcccCCCCchhhcc--------------------------------
Q 023975          187 NLDSVSEGSD-----TY---LTSTGDTINADCHFLCTGKPVGSDWLKD--------------------------------  226 (274)
Q Consensus       187 ~~i~~~~~~~-----~v---~~~~g~~~~~d~vv~a~G~~~~~~~~~~--------------------------------  226 (274)
                      .++....+.+     .+   ...++.++.+|.+|+|+|..|..+.++.                                
T Consensus        82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~  161 (201)
T PF07992_consen   82 VSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTE  161 (201)
T ss_dssp             EEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTT
T ss_pred             ccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccccc
Confidence            9997666531     22   3556678999999999997654322211                                


Q ss_pred             ---cccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          227 ---TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       227 ---~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                         ...++.++++|++.||+++++ +.|+||++|||++.+
T Consensus       162 ~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  162 FLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccC
Confidence               112335678899999999999 799999999999875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.64  E-value=0.016  Score=48.38  Aligned_cols=52  Identities=27%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +...+.+.+++ .++++. ..+|+++..+++. ..|.+.+|+.+.+|.||+|||.
T Consensus        97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            45556677776 688886 4679999766654 5788999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.59  E-value=0.003  Score=46.04  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+|||||..|.++|..|+ +|++|+++.+.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            5899999999999999997 699999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.027  Score=45.78  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+.+.+.+.+..+..|+++.. ..|..++..++.+.+.+++++ ++|+.||+|||..+...
T Consensus        60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            456777788888888999988 677777765557788889887 99999999999876543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.58  E-value=0.01  Score=51.54  Aligned_cols=34  Identities=38%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .++|+|||+|..|+-+|..+. .|. +|++++....
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~  316 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM  316 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence            478999999999999997665 565 7888876554

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.57  E-value=0.0028  Score=49.10  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=30.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ++++|||+|..|.+.|..|. .|++|+++|+.+..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~   35 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER   35 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence            47999999999999999997 59999999997653

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.48  E-value=0.0047  Score=53.42  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..+.  ..+.+++++.+.+.+.       +  .....+.....+.+++.|++++.++.+..  
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~--~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--  215 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLA--RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--  215 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHH--hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence            356777788999999999988  5688999998876542       1  12345666677778889999999887621  


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                            .+.+.+. .+.+|.||+|||..
T Consensus       216 ------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 ------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             ------ccCHHHH-HhhCCEEEEccCCC
Confidence                  1222222 27799999999975

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.0037  Score=54.11  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +|+|||.|++|+++|+.|. +|++|+++|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999987 59999999987654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.37  E-value=0.024  Score=49.83  Aligned_cols=35  Identities=37%  Similarity=0.518  Sum_probs=27.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..++|+|||+|.+|.-+|..|++ ..+|.+.-|+..
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999985 667888777654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.36  E-value=0.017  Score=48.12  Aligned_cols=96  Identities=17%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc---------CChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      +++..+++|+.|++.|..+.  ..+.+++++.+.+.+...         .+........+.+.+.|+++..++.+..+..
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLA--CLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHH--HCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            45667778889999999988  568899999987665321         1122233344556667999999988865532


Q ss_pred             ----CCCceeEEC--CCCcEEeecEEEEcccCC
Q 023975          192 ----SEGSDTYLT--STGDTINADCHFLCTGKP  218 (274)
Q Consensus       192 ----~~~~~~v~~--~~g~~~~~d~vv~a~G~~  218 (274)
                          ..+......  .++..+.+|.||+|||..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~  129 (352)
T PRK12770         97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW  129 (352)
T ss_pred             cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence                111111111  112247899999999983

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.35  E-value=0.0034  Score=50.32  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ...|.|||||.||..+||.++ +|..|.++|-.+.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            357999999999999999997 5999999996654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.33  E-value=0.0052  Score=41.21  Aligned_cols=34  Identities=44%  Similarity=0.625  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +.++|+|||||..|..-+..|. .|.+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4579999999999999998886 499999999874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.28  E-value=0.037  Score=49.38  Aligned_cols=56  Identities=20%  Similarity=0.222  Sum_probs=46.2

Q ss_pred             HHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccc
Q 023975          170 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT  227 (274)
Q Consensus       170 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~  227 (274)
                      .+..+++||+++.+.+++.+.  .+...|.++.|.++.+|.+|+|||..|....+++.
T Consensus        66 ~dwy~~~~i~L~~~~~v~~id--r~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~  121 (793)
T COG1251          66 NDWYEENGITLYTGEKVIQID--RANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGS  121 (793)
T ss_pred             hhhHHHcCcEEEcCCeeEEec--cCcceEEccCCcEeecceeEEecCccccccCCCCC
Confidence            466788999999999999875  44567889999999999999999998876555443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.25  E-value=0.015  Score=54.43  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..|+  ..+.+++++.+.+.+..         ...........+.+++.|+++++++.+ .+ 
T Consensus       539 gKkVaIIGgGPAGLsAA~~La--r~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-  614 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLA--RAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-  614 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence            456778888999999999998  56889999998765321         122334444556777889999999876 22 


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                              .+++.+...+|.||+|||..+
T Consensus       615 --------~le~L~~~gYDaVILATGA~~  635 (1019)
T PRK09853        615 --------TVEQLKNEGYDYVVVAIGADK  635 (1019)
T ss_pred             --------EhhhheeccCCEEEECcCCCC
Confidence                    222334566999999999865

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.25  E-value=0.0059  Score=45.55  Aligned_cols=32  Identities=34%  Similarity=0.438  Sum_probs=26.5

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||+|..|...|..++ .|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            5899999999999998886 5999999999764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0069  Score=49.01  Aligned_cols=37  Identities=41%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      .-..+||+|||||-+|+.+|.-|+. =..|+++|=.+.
T Consensus       351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            3456899999999999999999984 446899985544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.15  E-value=0.0048  Score=46.22  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..||..|..|+ .|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            47999999999999999998 5999999998765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.14  E-value=0.01  Score=45.22  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|+|||||.+|..-+..|. .|++|+|+++...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            479999999999999998886 5999999997643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.13  E-value=0.0086  Score=49.00  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..++|+|||+|..|.+.|..|++ |++|+++.|++
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34689999999999999999985 99999999865

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.0072  Score=49.84  Aligned_cols=44  Identities=34%  Similarity=0.567  Sum_probs=38.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecccee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR   55 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~   55 (274)
                      ..+|++|||.|..=...|.+..+ |.+|+=+|++++.|+.|..+.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS   51 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS   51 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence            35899999999988777777765 999999999999999998664

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.0092  Score=51.52  Aligned_cols=33  Identities=48%  Similarity=0.728  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++++|+|+|..|+++|..|. .|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999997 599999999875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.05  E-value=0.0088  Score=48.22  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ..+|.|||+|.-|...|..+. .|++|+++|+.+..
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            358999999999999998876 59999999988653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.97  E-value=0.02  Score=49.42  Aligned_cols=90  Identities=19%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ..++..+++|..|+..|..+.  ..+.+++++.+.+.+.       +  ..+..+.....+.+++.|++++.++.+.   
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~--~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---  207 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELA--KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---  207 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHH--HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC---
Confidence            356777888999999999998  5688999999876441       1  1234455666677888999999987541   


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccC-CCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGK-PVG  220 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~  220 (274)
                           ..+.+.+. ...+|.||+|||. .|.
T Consensus       208 -----~~v~~~~~-~~~yd~viiAtGa~~p~  232 (449)
T TIGR01316       208 -----KTATLEEL-FSQYDAVFIGTGAGLPK  232 (449)
T ss_pred             -----CcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence                 11223322 2468999999997 454

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.92  E-value=0.015  Score=50.40  Aligned_cols=91  Identities=10%  Similarity=0.050  Sum_probs=63.0

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc----C--C----hhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----I--G----PKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~----~--~----~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      .+++..+++|+.|+..|..|.....+.+|+++.+.+.+...    .  +    ..+...+.+.++..+++++.|..+.. 
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~-  104 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR-  104 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc-
Confidence            45688899999999999999743478999999998865321    1  1    12334455566778899988776521 


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             .+.+++-. ..+|.||+|+|..+
T Consensus       105 -------dvtl~~L~-~~yDaVIlAtGa~~  126 (491)
T PLN02852        105 -------DVSLSELR-DLYHVVVLAYGAES  126 (491)
T ss_pred             -------cccHHHHh-hhCCEEEEecCCCC
Confidence                   13333332 46999999999875

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.89  E-value=0.23  Score=42.79  Aligned_cols=133  Identities=20%  Similarity=0.272  Sum_probs=73.3

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCe-EEEEeCCCcc-------------------------CCc-----C--ChhHHHHH
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKK-VTLVHKGSRL-------------------------LEF-----I--GPKAGDKT  169 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~-v~~~~~~~~~-------------------------~~~-----~--~~~~~~~~  169 (274)
                      +..+++|++|+-++..|.+  .+.. +.++.+.+.+                         .+.     +  ...+.+.+
T Consensus        11 v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~   88 (443)
T COG2072          11 VAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI   88 (443)
T ss_pred             EEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence            4456667778888887774  3333 6666665422                         000     0  01256677


Q ss_pred             HHHHHhCCc--EEEcCceeeeec--cCCCceeEECCCCcE--EeecEEEEcccCCCCchhhcc-cccccccCCCCcEEeC
Q 023975          170 RDWLISKKV--DVKLGERVNLDS--VSEGSDTYLTSTGDT--INADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVD  242 (274)
Q Consensus       170 ~~~~~~~gv--~i~~~~~v~~i~--~~~~~~~v~~~~g~~--~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~~~v~  242 (274)
                      ...+++.+.  .+..++.|..+.  .+.+...|.++++..  +.+|.||+|||... .+.++. .|.   -+-.|.+.-.
T Consensus        89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~-~P~iP~~~G~---~~f~g~~~HS  164 (443)
T COG2072          89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLS-EPYIPDFAGL---DEFKGRILHS  164 (443)
T ss_pred             HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCC-CCCCCCCCCc---cCCCceEEch
Confidence            777777654  344455554444  444567888888765  55999999999732 222222 222   1123443332


Q ss_pred             CCccc---cCCCCeEEeccccC
Q 023975          243 ENLRV---KGQKNIFAIGDITD  261 (274)
Q Consensus       243 ~~~~~---~~~~~i~~~Gd~~~  261 (274)
                      .++..   -..++|-+||--++
T Consensus       165 ~~~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         165 ADWPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             hcCCCccccCCCeEEEECCCcc
Confidence            22221   14578888887554

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.88  E-value=0.011  Score=54.37  Aligned_cols=90  Identities=18%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      ++..+++|..|+..|..+.  ..+.+++++.+.+.+.       |  ..+..+.+...+.+++.|++++.++.+..    
T Consensus       433 ~V~IIGaGpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~----  506 (752)
T PRK12778        433 KVAVIGSGPAGLSFAGDLA--KRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK----  506 (752)
T ss_pred             EEEEECcCHHHHHHHHHHH--HCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC----
Confidence            3444566999999999998  5688999998765421       1  11334555556677889999999876521    


Q ss_pred             CCceeEECCCCcEEeecEEEEcccC-CCCc
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGK-PVGS  221 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~-~~~~  221 (274)
                          .+.+++.....+|.||+|||. .|..
T Consensus       507 ----~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 ----TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             ----cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                123333345679999999997 4543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.86  E-value=0.016  Score=42.10  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=28.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ...+|+|||||..|..-|..|. .|++|+|+++.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            3589999999999999998875 69999999643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.85  E-value=0.012  Score=42.50  Aligned_cols=30  Identities=40%  Similarity=0.628  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      |+|+|+|..|...|+.|+ .|++|+++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            789999999999999997 599999999976

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.85  E-value=0.012  Score=50.05  Aligned_cols=53  Identities=19%  Similarity=0.080  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +...+...+...|.+|+++++|++|+.+++++.+.+.+|+++.||.||+|++.
T Consensus       211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPP  263 (450)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-H
T ss_pred             hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCch
Confidence            34444555555677999999999999999999999999999999999999884

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=95.82  E-value=0.032  Score=48.38  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------Cc--CCh-hHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------EF--IGP-KAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~~--~~~-~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      .+.+..+++|+.|+..|..+.  ..+.+++++.+.+.+.       +.  ... .+.....+.+++.|+++++++.+.. 
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-  216 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLA--KMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-  216 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHH--hCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence            456777888999999999998  5688999998765431       11  112 2555556778889999999986621 


Q ss_pred             ccCCCceeEECCCC-cEEeecEEEEcccC-CCC
Q 023975          190 SVSEGSDTYLTSTG-DTINADCHFLCTGK-PVG  220 (274)
Q Consensus       190 ~~~~~~~~v~~~~g-~~~~~d~vv~a~G~-~~~  220 (274)
                             .+.+++. +.+.+|.||+|||. .|.
T Consensus       217 -------~v~~~~~~~~~~~d~viiAtGa~~~~  242 (464)
T PRK12831        217 -------TVTIDELLEEEGFDAVFIGSGAGLPK  242 (464)
T ss_pred             -------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence                   1222222 24579999999997 454

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.79  E-value=0.0076  Score=51.36  Aligned_cols=30  Identities=23%  Similarity=0.206  Sum_probs=26.0

Q ss_pred             hHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           23 VAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        23 ~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      +|||+||++|+ +|++|+|+|+++.+|+...
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~   31 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR   31 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence            58999999998 5999999999999996543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.76  E-value=0.0056  Score=49.48  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc-eeeecCCccccceeeeccccccccEEEEEe----eE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVASP----AI   85 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   85 (274)
                      ..++++|||||..++..|--++ .|.++.++=|.+.+--.+.. ++..+..++..+          ++.+....    .+
T Consensus       188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~----------ginvh~~s~~~~v~  257 (478)
T KOG0405|consen  188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGR----------GINVHKNSSVTKVI  257 (478)
T ss_pred             cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhc----------ceeecccccceeee
Confidence            4589999999999988887776 59999998887765311111 111111111111          11111110    01


Q ss_pred             EEe-c-CeEEeCCCeEEecCEEEEccCCCCCCChhHHHHH
Q 023975           86 NIT-E-NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL  123 (274)
Q Consensus        86 ~~~-~-~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~  123 (274)
                      .-+ . ..+....+.....|.+++|+|..|...++..+++
T Consensus       258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~v  297 (478)
T KOG0405|consen  258 KTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENV  297 (478)
T ss_pred             ecCCCceEEEEeccccccccEEEEEecCCCCcccccchhc
Confidence            111 1 1344455655568999999999998877554444

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.75  E-value=0.018  Score=43.80  Aligned_cols=33  Identities=39%  Similarity=0.711  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..++|+|||||-.|...|..|. .|++|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3579999999999999998886 59999999864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.71  E-value=0.012  Score=48.50  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ++|.|||+|..||+.|..|+. ||+|+.+|..+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            479999999999999999985 99999999765

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.54  E-value=0.016  Score=47.39  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.+.|..|. +|++|+++|+.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            47999999999999999987 5999999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.51  E-value=0.02  Score=46.70  Aligned_cols=32  Identities=31%  Similarity=0.284  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ++|+|||+|..|...|..|++ |++|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            589999999999999999975 99999999963

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.51  E-value=0.02  Score=42.25  Aligned_cols=33  Identities=30%  Similarity=0.445  Sum_probs=28.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|+|+|.+|..||..|. .|++|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            469999999999999999997 499999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.45  E-value=0.021  Score=47.38  Aligned_cols=32  Identities=38%  Similarity=0.577  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|...|..|+ .|++|+++++.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            57999999999999999997 599999999853

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.41  E-value=0.034  Score=39.34  Aligned_cols=34  Identities=41%  Similarity=0.628  Sum_probs=29.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~   45 (274)
                      ...+++|||+|-+|-+++++|. .|.+ ++|+.|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            4589999999999999999997 5876 99999864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.32  E-value=0.037  Score=47.15  Aligned_cols=52  Identities=33%  Similarity=0.452  Sum_probs=41.5

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCceeEE-CCCCcEEeecEEEEcccCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a~G~~  218 (274)
                      +.+.+.+++.|++|+++++|++|+.+++++.++ ..+|+++.||.||+++...
T Consensus       201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence            447777888899999999999999887765443 3467789999999998743

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK04148 hypothetical protein; Provisional

Probab=95.30  E-value=0.017  Score=40.46  Aligned_cols=33  Identities=42%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++++||.| .|.+.|..|+ .|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999 9998898887 5999999998765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.28  E-value=0.047  Score=51.88  Aligned_cols=85  Identities=15%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD  196 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~  196 (274)
                      +++|+.|+..|..|.  ..+.+++++.+.+.+.       +  .....+.+...+.+++.|+++.+++.+.      .. 
T Consensus       436 IG~GPAGLsaA~~La--~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg------~~-  506 (1006)
T PRK12775        436 CGSGPAGLAAAADLV--KYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG------KT-  506 (1006)
T ss_pred             ECCCHHHHHHHHHHH--HcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC------Cc-
Confidence            344899999999998  5688999998875432       1  1234566677778889999999986541      11 


Q ss_pred             eEECCCC-cEEeecEEEEcccCC-CC
Q 023975          197 TYLTSTG-DTINADCHFLCTGKP-VG  220 (274)
Q Consensus       197 ~v~~~~g-~~~~~d~vv~a~G~~-~~  220 (274)
                       +...+- +...+|.||+|||.. |.
T Consensus       507 -~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        507 -FTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -cCHHHHhhccCCCEEEEecCCCCCC
Confidence             111111 124589999999984 44

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.21  Score=38.10  Aligned_cols=131  Identities=18%  Similarity=0.140  Sum_probs=77.8

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc--------------------------------------CChhHHH
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF--------------------------------------IGPKAGD  167 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~--------------------------------------~~~~~~~  167 (274)
                      .++|++++..|..|+  ..+.++.++.++-.+..+                                      ....+..
T Consensus        36 VGaGPsGLtAAyyLA--k~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~s  113 (262)
T COG1635          36 VGAGPSGLTAAYYLA--KAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFAS  113 (262)
T ss_pred             ECcCcchHHHHHHHH--hCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHHHH
Confidence            344888999999998  457888888775433110                                      0122334


Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCC-ce-eEECC------CC-----cEEeecEEEEcccCCCCc-hhhcccc--ccc
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS------TG-----DTINADCHFLCTGKPVGS-DWLKDTI--LKD  231 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~------~g-----~~~~~d~vv~a~G~~~~~-~~~~~~~--~~~  231 (274)
                      .+....-+.|.++.....|+++...++ ++ .+..+      .+     -.++++.||-|||..... .++...+  +..
T Consensus       114 kl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~  193 (262)
T COG1635         114 KLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGI  193 (262)
T ss_pred             HHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcccccc
Confidence            444555567899999999999987766 33 23221      12     378999999999976542 3333222  111


Q ss_pred             ccCCC--------CcEEeCCCccccCCCCeEEecccc
Q 023975          232 SLDTH--------GMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       232 ~~~~~--------g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      .+...        -.+.|....+  -+|++|++|=.+
T Consensus       194 ~~~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~  228 (262)
T COG1635         194 EVPGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAV  228 (262)
T ss_pred             ccCCCcchhhhHHHHHHHhcccc--ccCCeEeehhhH
Confidence            11111        1133333344  389999999765

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.23  E-value=0.066  Score=46.74  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      +++..+++|..|+..|..|.  ..+.+++++.+.+.+.       +  ..+..+.....+.+++.|++++.++.+.. . 
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~--~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLN--RAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            46677788899999999998  5678999998876542       1  12334555556778889999999988741 1 


Q ss_pred             CCCceeEECCCCcEEeecEEEEcccCC
Q 023975          192 SEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       192 ~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                            +. .+.....+|.||+|||..
T Consensus       220 ------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 ------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             ------cC-HHHHHhhCCEEEEccCCC
Confidence                  00 011235799999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.027  Score=45.59  Aligned_cols=33  Identities=36%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            68999999999999999887 5999999998754

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.18  E-value=0.024  Score=44.91  Aligned_cols=44  Identities=20%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+.++|+++.. .+|.+++.-.           .-++|.||.|+|-..
T Consensus       152 ~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~-----------~~~~DVivNCtGL~a  195 (342)
T KOG3923|consen  152 KYLPYLKKRLTENGVEFVQ-RRVESLEEVA-----------RPEYDVIVNCTGLGA  195 (342)
T ss_pred             hhhHHHHHHHHhcCcEEEE-eeeccHHHhc-----------cCCCcEEEECCcccc
Confidence            4667899999999999975 4566554211           156899999999764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.18  E-value=0.025  Score=45.66  Aligned_cols=33  Identities=39%  Similarity=0.470  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.+.|..|+ .|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            57999999999999999887 5999999998753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.17  E-value=0.11  Score=44.55  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc------------------------------------CC-c---
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL------------------------------------LE-F---  160 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~------------------------------------~~-~---  160 (274)
                      .++..+++|.+|+-.|..+.  ..|.+++++.+.+.+                                    .+ .   
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~--~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELL--REGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CceEEECcchHHHHHHHHHH--HCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            45666788889998888888  457777777766543                                    00 0   


Q ss_pred             --CCh-hHHHHHHHHHHhCCc--EEEcCceeeeeccCC-CceeEECCCC----cEEeecEEEEcccCC
Q 023975          161 --IGP-KAGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP  218 (274)
Q Consensus       161 --~~~-~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~  218 (274)
                        ... .+.+.+...++..++  .+..++++..+.... +.+.|.+.+.    ++..+|.||+|+|..
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~  152 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY  152 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence              011 345556666666665  677888888888777 5777776443    367899999999965

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.16  E-value=0.021  Score=49.53  Aligned_cols=34  Identities=32%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            469999999999999998887 4999999998753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.12  E-value=0.04  Score=40.51  Aligned_cols=33  Identities=36%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             CCCcEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCC
Q 023975           12 KNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        12 ~~~~v~IIGaG~-aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..++|+|||+|- +|..+|.+|. +|.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            458999999995 7999998886 58899999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.11  E-value=0.026  Score=45.62  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            47999999999999999987 5999999998754

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=95.11  E-value=0.065  Score=47.19  Aligned_cols=66  Identities=12%  Similarity=-0.103  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCC--cEEeecEEEEcccCCCCchhhccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ..+...+.+.++++|+++..+++|++++.+++.+ .+++   .+|  .++.|+.||+|+|... ..+....+.
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~~~g~  199 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRIAEYAGL  199 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHHHHhcCC
Confidence            4567778888899999999999999998766643 3443   234  3799999999999875 444443343

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.08  E-value=0.029  Score=45.69  Aligned_cols=31  Identities=29%  Similarity=0.609  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+|||+|..|...|..|+ .|++|+++++.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            6999999999999999997 499999999843

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.08  E-value=0.031  Score=47.27  Aligned_cols=33  Identities=33%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ...|+|+|+|+.|+.+|..++ .|.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            579999999999999999997 599999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.05  E-value=0.034  Score=46.62  Aligned_cols=33  Identities=39%  Similarity=0.575  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|||+|.+|+.+|..|+ .|.+|+++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            467999999999999999997 499999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.05  E-value=0.074  Score=46.17  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..+.  ..+.+++++.+.+.+.       +  ..+..+.+...+.+++.|++++.++.+..- 
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~--~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  217 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILA--RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-  217 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-
Confidence            456777888999999999988  5688999998876532       1  123445556667788899999999877321 


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                             +..++ ....+|.||+|||..+.
T Consensus       218 -------~~~~~-~~~~~D~vilAtGa~~~  239 (467)
T TIGR01318       218 -------ISLDD-LLEDYDAVFLGVGTYRS  239 (467)
T ss_pred             -------cCHHH-HHhcCCEEEEEeCCCCC
Confidence                   11111 12469999999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=0.067  Score=40.75  Aligned_cols=65  Identities=22%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccc
Q 023975          161 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT  227 (274)
Q Consensus       161 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~  227 (274)
                      ..+.+.+.+++..++.|.++++. .|.++........+.++.+ .+.||.||+|||....--.++..
T Consensus        68 ~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkRl~~pg~  132 (322)
T KOG0404|consen   68 TGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKRLHLPGE  132 (322)
T ss_pred             ccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceeeeecCCC
Confidence            35678899999999999999875 4777777777777776554 69999999999987644444443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.031  Score=45.73  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|.-|...|..+. .|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            57999999999999998876 6999999998764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.97  E-value=0.033  Score=45.41  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHhhc-CCcEEEEcC
Q 023975           15 RVVVIGGGVAGSLVAKSLQF-SADVTLIDP   43 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~-g~~v~vie~   43 (274)
                      +|+|||+|..|...|..|++ |++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            69999999999999999974 999999998

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.87  E-value=0.048  Score=44.41  Aligned_cols=33  Identities=36%  Similarity=0.488  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ++|.|||+|..|..+|+.|+ +|+ +|+++|..+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            58999999999999999886 465 8999998554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.87  E-value=0.041  Score=44.93  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=28.0

Q ss_pred             cEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      +|.|||+|..|.++|+.|. +|  .++.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            6999999999999999986 46  58999998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.84  E-value=0.27  Score=46.89  Aligned_cols=99  Identities=17%  Similarity=0.008  Sum_probs=63.3

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC-----------ChhHHHHHHHHHHhC-CcEEEcCceeeee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVNLD  189 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i  189 (274)
                      .+..+++|..|+..|..+.  ..+.++.++.+.+.+....           ...+...+.+.+++. +++++.++.|..+
T Consensus       165 dVvIIGaGPAGLaAA~~aa--r~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       165 DVLVVGAGPAGLAAALAAA--RAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             CEEEECCCHHHHHHHHHHH--hCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            3556777999999999888  5788999998875542210           012334455556555 5999999998887


Q ss_pred             ccCCCceeEE-----C----CC---C--cEEeecEEEEcccCCCCch
Q 023975          190 SVSEGSDTYL-----T----ST---G--DTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       190 ~~~~~~~~v~-----~----~~---g--~~~~~d~vv~a~G~~~~~~  222 (274)
                      ...+....+.     +    ..   .  .++.+|.||+|||..+...
T Consensus       243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~  289 (985)
T TIGR01372       243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL  289 (985)
T ss_pred             ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence            5322111110     0    11   1  1689999999999877543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.83  E-value=0.06  Score=44.19  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~   47 (274)
                      ...+|+|||+|..|.++|+.++ +|+ +++|+|..+..
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            3469999999999999999886 574 89999987653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.055  Score=46.74  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (274)
                      .++|+|+|.|.+|.++|..|++|++|++.|...
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence            468999999999999999998899999999653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.74  E-value=0.046  Score=44.69  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            368999999999999998887 5999999998653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.73  E-value=0.037  Score=44.78  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            57999999999999998886 5999999998764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.71  E-value=0.05  Score=46.98  Aligned_cols=33  Identities=42%  Similarity=0.538  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|+|+|.+|+++|..|+ .|++|++.|+..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999997 599999999764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=94.67  E-value=0.071  Score=43.64  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=29.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      ....+|+|||+|..|.++|+.|. ++.  ++.|+|.+..
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            34579999999999999999886 455  7999998654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.67  E-value=0.12  Score=45.05  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  201 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  201 (274)
                      ++..++.|.+|+++|..|.  ..|.+|+++.+.+.       .....+.+.+++.|+++..+..+.              
T Consensus        18 ~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~--------------   74 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALL--ELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT--------------   74 (480)
T ss_pred             EEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc--------------
Confidence            4455667889999988887  56888998876542       233455667888999998876442              


Q ss_pred             CCcEEeecEEEEcccCCCCchhhc
Q 023975          202 TGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                        ....+|.||.++|..|+.+++.
T Consensus        75 --~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 --LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             --ccCCCCEEEECCCcCCCCHHHH
Confidence              1245899999999999887653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=94.63  E-value=0.083  Score=45.62  Aligned_cols=90  Identities=12%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc----CC---h---hHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----IG---P---KAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~----~~---~---~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      ..++..+++|++|+..|..+.. ..+.+++++.+.+.+...    ..   +   .+...+.+.+...++++..|..+-. 
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~-~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLK-HERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-hcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            4568888999999999997653 348899999998876331    11   1   2333444445567888876554421 


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             .+..++= ...+|+||+|+|..+
T Consensus       117 -------Dvt~eeL-~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        117 -------DLKMEEL-RNHYNCVIFCCGASE  138 (506)
T ss_pred             -------ccCHHHH-HhcCCEEEEEcCCCC
Confidence                   0111111 237899999999875

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.56  E-value=0.079  Score=43.43  Aligned_cols=43  Identities=30%  Similarity=0.464  Sum_probs=37.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR   55 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~   55 (274)
                      .+||+|.|.|+.-...+..|+ .|.+|+.||+++..|.....++
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt   49 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT   49 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence            599999999999888888887 5999999999999987766554

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.55  E-value=0.04  Score=49.92  Aligned_cols=89  Identities=13%  Similarity=0.089  Sum_probs=61.7

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..+.  ..+.+++++.+.+.+.       +  .....+.+...+.+++.|+++..++.+. ..
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La--~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d  269 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLL--RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD  269 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc
Confidence            456777888999999999998  5688999999876541       1  1233455566677888999999887542 10


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             +.+.+. ...+|.||+|||..+
T Consensus       270 -------v~~~~~-~~~~DaVilAtGa~~  290 (652)
T PRK12814        270 -------ITLEEL-QKEFDAVLLAVGAQK  290 (652)
T ss_pred             -------cCHHHH-HhhcCEEEEEcCCCC
Confidence                   111111 235999999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.55  E-value=0.045  Score=44.07  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|..|.+.|..++ .|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            57999999999999998887 5999999997754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.55  E-value=0.036  Score=39.19  Aligned_cols=31  Identities=26%  Similarity=0.495  Sum_probs=25.9

Q ss_pred             EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ++|+|+|+.+.+.+..++. |++|+++|..+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            5899999999999988875 999999998754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.46  E-value=0.065  Score=44.20  Aligned_cols=33  Identities=27%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|.-|...|..|. .|++|+++++.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            58999999999999999987 5999999999643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.44  E-value=0.038  Score=44.13  Aligned_cols=32  Identities=47%  Similarity=0.706  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      .-+|+|||||.+|..+|+-+. .|.+|+++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            358999999999999998776 59999999987

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=94.42  E-value=0.36  Score=40.56  Aligned_cols=39  Identities=23%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          177 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       177 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +..+..+++|.++.  .+.  +++.+|+++.||.||.|.|..+
T Consensus       100 ~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789       100 PEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             cccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence            33366788888883  333  4447888999999999999765

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02268 probable polyamine oxidase

Probab=94.41  E-value=0.11  Score=44.75  Aligned_cols=38  Identities=37%  Similarity=0.561  Sum_probs=34.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      .+|+|||||++||+||+.|+ .|++|+|+|+++.+|+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri   39 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV   39 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence            37999999999999999998 499999999999999654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.40  E-value=0.06  Score=44.98  Aligned_cols=33  Identities=36%  Similarity=0.574  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~   45 (274)
                      +++|+|||+|-.|..+|..|++ + .+|++.+|+.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            3689999999999999999874 5 8999999984

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.40  E-value=0.061  Score=43.66  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            57999999999999998886 5999999998754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.37  E-value=0.11  Score=49.15  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ..++..+++|+.|+..|..|+  ..+.+|+++.+.+.+..         ..+........+.+.+.||+++++....   
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LA--r~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d---  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLA--RAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD---  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc---
Confidence            356778888999999999998  56889999988764321         1123344444566777899998874211   


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             +...+.+...+|.||+|||..+
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~  633 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWK  633 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCC
Confidence                   1222333566999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=94.36  E-value=0.087  Score=43.97  Aligned_cols=47  Identities=21%  Similarity=0.229  Sum_probs=38.8

Q ss_pred             HHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          173 LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       173 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      ....||.+..+..|..+..++  ..|.++||.+|.+|.+.+|||..|..
T Consensus       267 ~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~  313 (659)
T KOG1346|consen  267 AVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKK  313 (659)
T ss_pred             cccCceEEEeccceEEeeccc--CeEEecCCcEeehhheeeecCcCccc
Confidence            445689999999998886443  45788999999999999999998864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.35  E-value=0.079  Score=45.74  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|+|+|.|.+|+++|..|+ +|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999999999999999997 6999999997654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.35  E-value=0.052  Score=45.80  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      +|.|||.|..|+..|..++.|++|+++|+++.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence            69999999999999977777999999998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.29  E-value=0.077  Score=40.30  Aligned_cols=32  Identities=31%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~   44 (274)
                      ..+|+|||+|-.|..+|..|.+ |. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4799999999999999999985 88 69999975

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.27  E-value=0.063  Score=46.88  Aligned_cols=32  Identities=38%  Similarity=0.543  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..+|+|+|.|.+|++++..|+ +|++|++.|..
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999998886 59999999965

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.25  E-value=0.057  Score=44.42  Aligned_cols=32  Identities=31%  Similarity=0.415  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|...|..|+ .|++|+++++++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            47999999999999999987 599999999864

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.23  E-value=0.066  Score=46.38  Aligned_cols=33  Identities=42%  Similarity=0.522  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|+|.|.+|+++|..|+ .|++|++.|+.+
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            468999999999999999997 599999999765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.14  E-value=0.078  Score=42.99  Aligned_cols=33  Identities=33%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+++|||.|.+|..+|..|+ .|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999997 499999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=94.14  E-value=0.073  Score=44.92  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ....|+|+|.|+.|..+|..|+ .|.+|+++|..+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            3579999999999999999998 599999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.12  E-value=0.084  Score=37.28  Aligned_cols=33  Identities=48%  Similarity=0.672  Sum_probs=28.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      +.+|+|||+|-.|..+|..|.+ |. +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4689999999999999999985 77 799999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.09  E-value=0.094  Score=39.87  Aligned_cols=33  Identities=33%  Similarity=0.344  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|+|.|-.|..+|..|. .|++|+++|++.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999999999999997 599999998763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.07  E-value=0.06  Score=45.91  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..|+..|..|+ +|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            68999999999999999997 5999999998654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.96  E-value=0.065  Score=44.17  Aligned_cols=31  Identities=23%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|.|||+|..|.+.|..|+ .|++|+++++.+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            6999999999999999997 499999999864

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.96  E-value=0.076  Score=38.51  Aligned_cols=34  Identities=41%  Similarity=0.574  Sum_probs=26.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.++|+|-|..|-.+|..|+ .|.+|+|.|..+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3579999999999999999998 599999999865

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.94  E-value=0.097  Score=42.76  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ++|+|||+|..|.+.|..+. .|. ++.++|..+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            68999999999999998886 454 9999998654

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.88  E-value=0.1  Score=43.80  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             cccCCCCCCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975            5 RQQQSEGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus         5 ~~~~~~~~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +...++...++|+|.|| |..|..++..|. +|++|+.+++..
T Consensus        13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            33445556789999998 999999999996 699999999753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.84  E-value=0.073  Score=36.36  Aligned_cols=31  Identities=39%  Similarity=0.506  Sum_probs=26.6

Q ss_pred             EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        16 v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      |+|+|.|..|...+..|.+ +.+|+++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            6899999999999999985 569999999764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.82  E-value=0.069  Score=46.37  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+++|+|+|+.|+.++..++ .|.+|+++|.+..
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            369999999999999999887 5999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.81  E-value=0.072  Score=40.54  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+.|.|||||.-|...|...+ .|++|.++|+++.
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            4579999999999999997765 6999999999875

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.78  E-value=0.1  Score=42.62  Aligned_cols=33  Identities=42%  Similarity=0.513  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCc
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYF   47 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~~   47 (274)
                      +|+|||+|.+|.++|+.|. +|  .+++++|+.+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            7999999999999999986 46  589999987643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.77  E-value=0.07  Score=45.51  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            6999999999999999997 5999999998754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.77  E-value=0.089  Score=42.44  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++++|||.|..|.++|..|+ .|.+|++++|+..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999999999999997 5999999998753

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.69  E-value=0.094  Score=38.41  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=27.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +++|.+||-|..|...|.+|. .|++|.++|+.+
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            368999999999999999997 599999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.64  E-value=0.13  Score=36.66  Aligned_cols=33  Identities=36%  Similarity=0.511  Sum_probs=28.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~--g~~v~vie~~~~   46 (274)
                      .+|.|||+ |..|.+.|+.|. .  ..++.|+|..+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            47999999 999999999986 2  567999998754

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.58  E-value=0.11  Score=44.17  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+.|+|+|.|..|..+|..|+ .|.+|+++|..+.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            3578999999999999999997 5999999997653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.55  E-value=0.1  Score=45.34  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|+|.|-+|.++|..|. +|++|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            468999999999999999997 599999999654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.52  E-value=0.12  Score=40.16  Aligned_cols=34  Identities=29%  Similarity=0.554  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~---~v~vie~~~   45 (274)
                      ...+++|+|+|-+|..+|..|. .|.   ++.+++|..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            3479999999999999999997 476   499999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.44  E-value=0.12  Score=44.95  Aligned_cols=34  Identities=38%  Similarity=0.576  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+++|+|+|.|-+|+++|..|. +|++|++.|+..
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            4568999999999999999887 599999999753

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.35  E-value=0.13  Score=42.51  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|+..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            4789999999999999999985 87 899999864

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.31  E-value=0.11  Score=44.46  Aligned_cols=35  Identities=34%  Similarity=0.404  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      +++|+|+|-|-+|+++|..|.+ |++|++.|..+..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            5799999999999999999974 9999999976654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.29  E-value=0.15  Score=41.72  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.+.|..|. .|++|+++++...
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57999999999999999997 5999999998753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.27  E-value=0.12  Score=45.14  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|.-|...|..|. .|++|+++|+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            47999999999999998886 5999999998754

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.25  E-value=0.14  Score=41.20  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      .++++|||+|-+|-++|+.|. .|. +++|++|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            468999999999999999997 576 799999874

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.016  Score=46.81  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      -+.+|||||..+|.||-.|+ .|++|+|.=|+-.+
T Consensus       199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L  233 (503)
T KOG4716|consen  199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL  233 (503)
T ss_pred             CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec
Confidence            47899999999999999998 59999998876433

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.21  E-value=0.12  Score=44.74  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~   45 (274)
                      ++|+|||.|..|+..|..|+ +  |++|+.+|.++
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            57999999999999999997 3  58899999765

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.18  E-value=0.13  Score=45.02  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      -.+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            368999999999999998886 5999999998765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.16  E-value=0.16  Score=40.44  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (274)
                      ...+|+|||+|-.|..+|..|++ | -+++|+|....
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            35799999999999999999985 7 58999997643

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=93.12  E-value=0.16  Score=39.89  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..+++|+|+|+.+...|..++. |++|+|+|..+.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            3699999999999999998875 999999997765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN02494 adenosylhomocysteinase

Probab=93.08  E-value=0.15  Score=43.77  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|+|.|+.|..+|..++ .|.+|+++|+.+
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999997 599999999865

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.08  E-value=0.17  Score=41.50  Aligned_cols=35  Identities=37%  Similarity=0.442  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      +..+|+|||+|..|.++|+.|. .| .++.|+|..+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            3469999999999999998886 46 68999998654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.01  E-value=0.18  Score=38.39  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      ...+|+|||+|-.|..+|..|.+ |. +++++|...
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            35799999999999999999974 76 899999753

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.00  E-value=0.2  Score=41.01  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=28.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~   46 (274)
                      +.+|+|||+|..|.++|+.|. .  ..++.|+|.++.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            469999999999999999886 3  457999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.00  E-value=0.26  Score=44.67  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=61.4

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..|.  ..|.+++++.+.+.+..         ..+..+.+...+.+++.|+++++++.+..- 
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~--~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  386 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILA--RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-  386 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHH--HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-
Confidence            345556667999999999998  56889999998875321         133445555667788899999999876310 


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             +.+.+ ....+|.||+|+|..+
T Consensus       387 -------~~~~~-l~~~~DaV~latGa~~  407 (639)
T PRK12809        387 -------ITFSD-LTSEYDAVFIGVGTYG  407 (639)
T ss_pred             -------CCHHH-HHhcCCEEEEeCCCCC
Confidence                   11111 1346899999999754

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.95  E-value=0.2  Score=38.59  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|||||..++.=+..|. .|.+|+|+-+.-
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            468999999999988777775 599999998753

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.84  E-value=0.16  Score=44.02  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~-~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++|+|||.|-+|++ +|..|+ +|++|++.|....
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            3468999999999999 588887 5999999997653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.77  E-value=0.12  Score=42.12  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ++|+|+|+|..|...|+.|++ |.+|+++-|.+.
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            379999999999999999974 889999988765

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.75  E-value=0.13  Score=44.95  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            57999999999999998886 5999999998764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.72  E-value=0.17  Score=39.15  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             cEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIG-aG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|.||| +|..|.+.|..|. .|++|+++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            699997 7999999998886 589999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=92.72  E-value=0.44  Score=41.47  Aligned_cols=52  Identities=25%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             HHHHHHHHHh-CCcEEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEcccCC
Q 023975          166 GDKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       166 ~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ...+++.++. .++.+..++ |.++..+++  ...|++.+|..+.|+.||++||..
T Consensus       103 ~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445         103 RRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             HHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence            3445555554 477777654 556655444  467999999999999999999953

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.64  E-value=0.13  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||.|..|.+.|..|. +|++|+++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6999999999999999997 5999999998643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.63  E-value=0.34  Score=44.12  Aligned_cols=89  Identities=18%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++..+++|..|+..|..|.  ..+.+++++.+.+.+.       +  .....+.....+.+++.|+++..++.+..- 
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~--~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-  403 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLA--RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD-  403 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-
Confidence            345666777999999999998  5788999998876532       1  123344555566778889999999876310 


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                             +...+ ....+|.||+|+|...
T Consensus       404 -------i~~~~-~~~~~DavilAtGa~~  424 (654)
T PRK12769        404 -------ISLES-LLEDYDAVFVGVGTYR  424 (654)
T ss_pred             -------CCHHH-HHhcCCEEEEeCCCCC
Confidence                   11111 1236999999999753

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.58  E-value=0.18  Score=44.21  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|+|.|.+|+++|..|+ +|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999998887 599999999754

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=92.51  E-value=0.18  Score=44.96  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+++|+|+|..|-..|..|+ +|++++++|+++.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            468999999999999999997 5999999998764

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.47  E-value=0.19  Score=41.11  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=27.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~   45 (274)
                      .+|.|||+|..|.+.|..|. .|  .+|+++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            58999999999999999887 46  4899999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=92.47  E-value=0.24  Score=37.42  Aligned_cols=34  Identities=38%  Similarity=0.467  Sum_probs=28.7

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ...+++|+|| |..|..+|..|. .|++|+++.|+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3478999997 999999998886 589999998863

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.47  E-value=0.1  Score=43.20  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=36.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR   55 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~   55 (274)
                      .|||+|+|.|..=...+..|+ .|.+|+.+||+++.|+....+.
T Consensus         4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt   47 (440)
T KOG1439|consen    4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT   47 (440)
T ss_pred             ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence            399999999998776667777 5999999999999997776655

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.43  E-value=0.21  Score=41.36  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      ..+|+|||+|-.|..+|..|.+ |. +++++|...
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4799999999999999999974 77 899999853

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.40  E-value=0.16  Score=43.93  Aligned_cols=31  Identities=35%  Similarity=0.681  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+|+|+|..|...|..|. +|++|+++|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            7999999999999999997 599999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	5e-29
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	3e-25
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	5e-24
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	6e-20
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-18
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	6e-17
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-16
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-15
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	4e-15
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	3e-14
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	3e-14
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-14
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-13
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	3e-13
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	4e-13
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-12
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-12
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-12
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	4e-12
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	8e-12
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	2e-11
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	3e-08
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-07
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	4e-06
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-05
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	3e-05
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	5e-05
4fk1_A	304	Putative thioredoxin reductase; structural genomic	6e-05
4dna_A	463	Probable glutathione reductase; structural genomic	6e-05
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	9e-05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	1e-04
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-04
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	2e-04
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-04
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	4e-04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	9e-04

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score =  102 bits (257), Expect = 3e-25
 Identities = 54/323 (16%), Positives = 91/323 (28%), Gaps = 68/323 (21%)

Query: 13  NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYF----EITW--ASLRAMVEPSF 62
           +  VV++G G  G   A  ++       +VTLI   +YF       W     +   + +F
Sbjct: 4   SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAF 63

Query: 63  GKRSVINHTD-YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK--------- 112
             R  +     + +         I+     +  A+G  V YDYL+IATG K         
Sbjct: 64  PIRHYVERKGIHFIAQSAEQ---IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGS 120

Query: 113 -------------DPVPKTRTERLNQYQAG-------PTGVELAG---EIA--------- 140
                        D   +   E     +           G    G   E A         
Sbjct: 121 DPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK 180

Query: 141 --VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS--KKVDVKLGERVNLDSVSEGSD 196
             +       T +     +    G +    ++  L    K+  ++      +  V +   
Sbjct: 181 RGMRDKIPSFTFITSEPYIGHL-GIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKM 239

Query: 197 TYLTSTGDTINADCH-----FLCTGKPV-GSDWLKDTILKDSLDTHGMLMVDENLRVKGQ 250
                               F        G   +     +   +  G ++VDE+ R K  
Sbjct: 240 YVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGV--EGLCNPGGFVLVDEHQRSKKY 297

Query: 251 KNIFAIGDITDIRVSASMIFPQV 273
            NIFA G    I    +   P  
Sbjct: 298 ANIFAAGIAIAIPPVETTPVPTG 320

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 99.0 bits (247), Expect = 5e-24
 Identities = 49/337 (14%), Positives = 91/337 (27%), Gaps = 91/337 (27%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEIT---------WASLRAMVEP 60
            +V+V+GG       A +L+      ADV +I+   +                +  +   
Sbjct: 2   TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVD 61

Query: 61  SFGKRSVINHTD-YLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHK--- 112
                  +         G +     I+   + V             YDY+++  G     
Sbjct: 62  ---LSEALPEKGIQFQEGTVE---KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLAT 115

Query: 113 ----------------DPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEK---------- 146
                           +   K R E+L  +Q G   +          P+           
Sbjct: 116 ELVKGWDKYGYSVCEPEFATKLR-EKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNA 174

Query: 147 ----------------------------KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV 178
                                        VT+   G  L +   P +            +
Sbjct: 175 DSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDL-SPNSRKAVASIYNQLGI 233

Query: 179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGM 238
            +       +  + E     +   G+TI AD   L      G+  LK++   D +D  G 
Sbjct: 234 KLVHN--FKIKEIRE--HEIVDEKGNTIPADITILLPPY-TGNPALKNSTP-DLVDDGGF 287

Query: 239 LMVDENLRVKGQKNIFAIGDITDIRVS--ASMIFPQV 273
           +  D N+      N++A+GD   + V     +     
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTG 324

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 87.5 bits (217), Expect = 6e-20
 Identities = 59/303 (19%), Positives = 93/303 (30%), Gaps = 63/303 (20%)

Query: 14  KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEI----TW--ASLRAMVEPSFGK 64
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +             R +     G 
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 65  RSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG-------------- 110
             +  H   +V+        I+  +  V TA G    YD  V+A G              
Sbjct: 63  DGLRAHGIQVVHDSATG---IDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEGYSEE 119

Query: 111 ----------HKDPVPKTRTERLNQYQAGPTGV---------------ELAGEIAVDF-- 143
                       +     R ++L     G T V               E A ++A     
Sbjct: 120 AAAKLPHAWKAGEQTAILR-KQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKA 178

Query: 144 --PEKKVTLVHKGSRLLEFIGPKAGDKT--RDWLISKKVDVKLGERVNLDSVSEGSDTYL 199
             P  KV ++       +      G +        +  ++   G    +  V  G     
Sbjct: 179 HKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVE 238

Query: 200 TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGD 258
           T+ GD   AD   L           +   L +     G   VD +       K I  IGD
Sbjct: 239 TAFGDEFKADVINLIP-PQRAGKIAQIAGLTND---AGWCPVDIKTFESSIHKGIHVIGD 294

Query: 259 ITD 261
            + 
Sbjct: 295 ASI 297

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 65/305 (21%)

Query: 5   RQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------E 48
              +    ++++VV+GG   G+ VA   + L    ++ +++  EY               
Sbjct: 28  DDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGV 87

Query: 49  IT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVY 102
           IT    L         KR  +   D  V   +V    IN  E  +      T E     Y
Sbjct: 88  ITERQKLLVQTVERMSKRFNL---DIRVLSEVVK---INKEEKTITIKNVTTNETYNEAY 141

Query: 103 DYLVIATGHKDPVP--------------KTR--TERLNQYQ------------AGPTGVE 134
           D L+++ G K  VP              +    T+R+  Y              G  GVE
Sbjct: 142 DVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVE 201

Query: 135 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 194
           +  E  +     +VTLV   ++++  I  +      + + +  V++   + V  D++ E 
Sbjct: 202 MV-E-NLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGV--DALEEN 257

Query: 195 SDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI 253
                  +G  I  D   L  G +P  S   K   L   L   G + V+E  +     +I
Sbjct: 258 GAVVRLKSGSVIQTDMLILAIGVQP-ESSLAKGAGLA--LGVRGTIKVNEKFQT-SDPHI 313

Query: 254 FAIGD 258
           +AIGD
Sbjct: 314 YAIGD 318

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 79.1 bits (196), Expect = 6e-17
 Identities = 52/292 (17%), Positives = 101/292 (34%), Gaps = 63/292 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
            ++VV+G    G+  A   + L   +D+ + +                   +       A
Sbjct: 2   PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALA 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
                F  R  I          ++A   IN     V      T E     YD L+++ G 
Sbjct: 62  YTPEKFYDRKQI---TVKTYHEVIA---INDERQTVSVLNRKTNEQFEESYDKLILSPGA 115

Query: 112 KDPVP----------KTR--TERLNQYQ------------AGPTGVELAGEIAVDFPEKK 147
                          +    T+ ++Q+             AG   +E+  E  +      
Sbjct: 116 SANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVL-E-NLYERGLH 173

Query: 148 VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 207
            TL+H+  ++ + +         D L  +++  +L E +  +++  G++    S G   +
Sbjct: 174 PTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEI--NAI-NGNEITFKS-GKVEH 229

Query: 208 ADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
            D      G  P  S +++ + +K  LD  G + V++        NI+AIGD
Sbjct: 230 YDMIIEGVGTHPN-SKFIESSNIK--LDRKGFIPVNDKFET-NVPNIYAIGD 277

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 47/298 (15%), Positives = 99/298 (33%), Gaps = 69/298 (23%)

Query: 6   QQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLI--DPK---------EYF--EITW 51
                 K+ +++++G G AG   AK+      D+T+I  +           E      + 
Sbjct: 2   HHHHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI 61

Query: 52  ASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH 111
             +  + +  + ++   N+   + +    +   I+     V    G ++ Y+ L+IA+G 
Sbjct: 62  DDI-LIKKNDWYEK---NNIKVITSEFATS---IDPNNKLVTLKSGEKIKYEKLIIASGS 114

Query: 112 KDPVPKT---------RT----ERLNQYQ----------AGPTGVELAGEIAVDFPEKKV 148
                K           +     ++               G  G+ELA  I         
Sbjct: 115 IANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDS--GTPA 172

Query: 149 TLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 207
           ++       LE  +    G   +D L    + +                      GD I 
Sbjct: 173 SIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF-------------EEMGDLIR 219

Query: 208 ADCHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
           + C     G KP          +KD+ + +   ++V++++     K+I+A GD+ +  
Sbjct: 220 SSCVITAVGVKP------NLDFIKDTEIASKRGILVNDHMET-SIKDIYACGDVAEFY 270

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 55/305 (18%), Positives = 102/305 (33%), Gaps = 63/305 (20%)

Query: 4   RRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF------------- 47
               +    +   V+IGG  AG   A        +A+V  ++  E +             
Sbjct: 27  DDDDKDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISG 86

Query: 48  EIT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVV 101
            I     L A    +F  +  I   D  V   +     ++  +  V      T +     
Sbjct: 87  AIASTEKLIARNVKTFRDKYGI---DAKVRHEVTK---VDTEKKIVYAEHTKTKDVFEFS 140

Query: 102 YDYLVIATGHKDPVP-------------KTR--TERLNQYQ------------AGPTGVE 134
           YD L+IATG +  +P             KT    ER+ +               G  G+E
Sbjct: 141 YDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLE 200

Query: 135 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 194
           +A E       KKV ++ +   +         +          +++   E V        
Sbjct: 201 MA-E-TFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVK-AFKGNE 257

Query: 195 SDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNI 253
               + +   T  AD   +  G KP  +D+L+ T ++   +  G + V+  ++    +++
Sbjct: 258 RVEAVETDKGTYKADLVLVSVGVKP-NTDFLEGTNIR--TNHKGAIEVNAYMQT-NVQDV 313

Query: 254 FAIGD 258
           +A GD
Sbjct: 314 YAAGD 318

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 71/302 (23%), Positives = 100/302 (33%), Gaps = 68/302 (22%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLID------------P-------KEYFEITW 51
           K VVVIG    G   A   K L   A VT+ID            P            +  
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQA 63

Query: 52  ASLRAMVEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYL 105
                + +P  F     +   + LV  R  A   I+   + V      T E R + YD L
Sbjct: 64  TPYNVVRDPEFFRINKDV---EALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKL 117

Query: 106 VIATGHKDPVP-------------KTR--TERLNQYQ------------AGPTGVELAGE 138
           V+A G K   P                   E +                 G  G+E+A  
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMA-V 176

Query: 139 IAVDFPEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 197
              D      T+V    +++  F         R  L    V V  GE+V       G   
Sbjct: 177 SLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA 236

Query: 198 YLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 256
            + +   T++AD   L  G  P  +   +D  L+  LD  G ++VD  +R     +IFA 
Sbjct: 237 RVITDKRTLDADLVILAAGVSPN-TQLARDAGLE--LDPRGAIIVDTRMRT-SDPDIFAG 292

Query: 257 GD 258
           GD
Sbjct: 293 GD 294

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 65/297 (21%), Positives = 107/297 (36%), Gaps = 69/297 (23%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  V++ G G AG  VA SL   ++   + LI+     P       K Y +        M
Sbjct: 1   NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60

Query: 58  VEP-SFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HKD 113
             P  F +   I     L++ R+V+   I+    ++L A G  + Y +LV+ATG      
Sbjct: 61  FRPEKFFQDQAIE----LISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRML 113

Query: 114 PVPKT--------RT--------ERLNQYQ------AGPTGVELA------GEIAVDFPE 145
            VP          RT        +R+   +      AG  G+E A      G        
Sbjct: 114 DVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG-------- 165

Query: 146 KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLTSTG 203
            +V +V    R++   + P+      D      + +  G R   + +  +     + S G
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDG 225

Query: 204 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260
           +T+  D   +  G     +          L T   ++VD+ L      +I AIGD  
Sbjct: 226 NTLPCDLVVVGVGVIPNVEIAAAA----GLPTAAGIIVDQQLLT-SDPHISAIGDCA 277

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 55/297 (18%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITW 51
            + + +   VV++G G  G+  A +L    F   V +I      P       KEY     
Sbjct: 3   SEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK 62

Query: 52  ASLRAMVEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIAT 109
              R  + P+  +  ++V    +  +   +V+   ++   + V   +G  + Y  L+ AT
Sbjct: 63  TFERICIRPAQFWEDKAV----EMKLGAEVVS---LDPAAHTVKLGDGSAIEYGKLIWAT 115

Query: 110 G---HKDPVPKT--------RT----ERL-NQYQAGPTGVELAG------EIAVDFPEK- 146
           G    +              RT    +RL  +  AG     + G      E A    +  
Sbjct: 116 GGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFG 175

Query: 147 -KVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN-LDSVSEGSDTYLTSTG 203
             VTL+    R+L    G    +  +    +  VD++ G  ++ ++             G
Sbjct: 176 VNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDG 235

Query: 204 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260
             I AD   +  G       L              + VDE  R     +++AIGD  
Sbjct: 236 SVIPADIVIVGIGIVPCVGALISA----GASGGNGVDVDEFCRT-SLTDVYAIGDCA 287

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 62/293 (21%), Positives = 99/293 (33%), Gaps = 66/293 (22%)

Query: 15  RVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAMVE 59
            V +IG GV G   A++L    F   ++LI      P       K   + +      + E
Sbjct: 4   HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAE 63

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH---KDPVP 116
             +   + I   D L    + A   +++    +   +G  +  D +VIATG       +P
Sbjct: 64  ADWYGEARI---DMLTGPEVTA---LDVQTRTISLDDGTTLSADAIVIATGSRARTMALP 117

Query: 117 KT--------RT--------ERLNQYQ------AGPTGVELA------GEIAVDFPEKKV 148
            +        RT        +             G  G E+A      G          V
Sbjct: 118 GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLG--------LSV 169

Query: 149 TLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 207
           T++  G  LL   +G + G   R  L    V V+LG  V   S     +  + S G +  
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229

Query: 208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260
           AD   +C G        +       L     ++VD        K +FA+GD+ 
Sbjct: 230 ADSALICVGAEPADQLARQA----GLACDRGVIVDHCGAT-LAKGVFAVGDVA 277

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 54/314 (17%), Positives = 108/314 (34%), Gaps = 81/314 (25%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRA 56
           K++++IGG   G+  A   + L  +A++ + +  EY              EI   ++L  
Sbjct: 2   KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVL 61

Query: 57  MVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGH 111
               SF  R  +   +  V   +VA   I+     V           +  YD L+++ G 
Sbjct: 62  QTPESFKARFNV---EVRVKHEVVA---IDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA 115

Query: 112 KDPVP-------------KTR--TERLNQYQ------------AGPTGVELAGEIAVDFP 144
              VP             +     +R+ Q               G  G+E+  E ++   
Sbjct: 116 APIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMM-E-SLHHL 173

Query: 145 EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV------------------ 186
             K TL+    +++  +  +        +  + VD++LG  +                  
Sbjct: 174 GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGE 233

Query: 187 -NLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDEN 244
                  +G  +   S G+ +  D   +  G +P  +   +D  L   +   G + V+  
Sbjct: 234 DTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP-ETQLARDAGLA--IGELGGIKVNAM 290

Query: 245 LRVKGQKNIFAIGD 258
           ++      I+A+GD
Sbjct: 291 MQT-SDPAIYAVGD 303

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 60/303 (19%), Positives = 101/303 (33%), Gaps = 75/303 (24%)

Query: 13  NKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWASLRAM 57
           N  VV++G G+AG  VA  L    +  ++ L+      P       K Y      +    
Sbjct: 4   NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 63

Query: 58  VEPS--FGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
           +     +  +++      L   ++ A   IN    +V+ ++GR + YD LV+ATG     
Sbjct: 64  LRTPDAYAAQNI----QLLGGTQVTA---INRDRQQVILSDGRALDYDRLVLATGGRPRP 116

Query: 113 DPVPKT-----------RT--------ERLNQYQ------AGPTGVELA------GEIAV 141
            PV              RT         +L           G  G+E+A           
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKAN---- 172

Query: 142 DFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-- 198
                 VTL+   +R+LE    P              VD++ G +V    +S        
Sbjct: 173 ----MHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTA 228

Query: 199 -LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 257
            L   G  + AD      G     +          L     ++++E+++      I A+G
Sbjct: 229 VLCEDGTRLPADLVIAGIGLIPNCELASAA----GLQVDNGIVINEHMQT-SDPLIMAVG 283

Query: 258 DIT 260
           D  
Sbjct: 284 DCA 286

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 53/319 (16%), Positives = 93/319 (29%), Gaps = 68/319 (21%)

Query: 7   QQSEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYF---- 47
           Q     +   ++IGGG A    A+S+      A V ++      P       KE +    
Sbjct: 5   QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDD 64

Query: 48  EITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP--------------AINITENEVL 93
                +LR        +        + V+ + +                  +++ +N V 
Sbjct: 65  PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 124

Query: 94  TAEGRRVVYDYLVIATG---------------HKDPVPKTRT----ERLNQYQ------- 127
             +G ++ Y+  +IATG                K      R       L +         
Sbjct: 125 LNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSIT 184

Query: 128 ---AGPTGVELAGEIAVDFPE--KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVK 181
               G  G ELA  +         +V  +      +   +     + T + +  + V V 
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244

Query: 182 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 241
               V    VS G        G  +  D      G     +  K   L+   D  G   V
Sbjct: 245 PNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR-V 303

Query: 242 DENLRVKGQKNIFAIGDIT 260
           +  L+ +   NI+  GD  
Sbjct: 304 NAELQAR--SNIWVAGDAA 320

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 67.5 bits (166), Expect = 4e-13
 Identities = 56/294 (19%), Positives = 102/294 (34%), Gaps = 64/294 (21%)

Query: 13  NKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLR 55
           + ++V+IG   AG   A   +     A+++LID +                 I      R
Sbjct: 2   SLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEAR 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL---TAEGRRVVYDYLVIATG-- 110
            + E    ++ +      L+N  +VA   +++    +      E +   YD L++ATG  
Sbjct: 62  YITEEELRRQKI----QLLLNREVVA---MDVENQLIAWTRKEEQQWYSYDKLILATGAS 114

Query: 111 ---------HKDPVPKTRT--------ERLNQYQ------AGPTGVELAGEIAVDFPEKK 147
                      + + K +           L   Q      AGP G+E   +  +   +K 
Sbjct: 115 QFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAI-D-FLVKMKKT 172

Query: 148 VTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDT 205
           V +      LL ++   +   + +  L  + V     E V    + E ++  +  T    
Sbjct: 173 VHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETV--LGIEETANGIVLETSEQE 230

Query: 206 INADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
           I+ D         P    +L   I     +    + VD  L+     N+FAIGD
Sbjct: 231 ISCDSGIFALNLHPQ-LAYLDKKI---QRNLDQTIAVDAYLQT-SVPNVFAIGD 279

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 56/295 (18%), Positives = 101/295 (34%), Gaps = 65/295 (22%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EITWASLRAMV 58
           +V+V+G   AG+       +    ADVT  +  +               EI     R + 
Sbjct: 2   KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLF 61

Query: 59  EPS---FGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATG 110
             S             +  +  ++     ++     +      T E +   YD L++ TG
Sbjct: 62  YSSPEELSNLGA----NVQMRHQVTN---VDPETKTIKVKDLITNEEKTEAYDKLIMTTG 114

Query: 111 -----------HKDPVPKTRT--------ERLNQYQ------AGPTGVELAGEIAVDFPE 145
                          V   +         E   + +      +G  G ELA E A     
Sbjct: 115 SKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELA-E-AYSNQN 172

Query: 146 KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 204
             V L+    R+L ++   +  D       +  V++ LG +V      +      T  G 
Sbjct: 173 YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGK 232

Query: 205 TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
            I +D   LC G +P  ++ LK  +   ++  +G ++ DE +     ++IFA GD
Sbjct: 233 EIKSDIAILCIGFRPN-TELLKGKV---AMLDNGAIITDEYMHS-SNRDIFAAGD 282

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 55/299 (18%), Positives = 90/299 (30%), Gaps = 73/299 (24%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL---QFSADVTLID-----P-------KEYFEITWAS 53
            E     VVV+G G+A       L    +   +T++      P       K++       
Sbjct: 3   QEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFM------ 56

Query: 54  LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGH-- 111
                E            ++L+        + +   + V  ++GR + Y  LV+ATG   
Sbjct: 57  AHGDAEKIRLDCKRAPEVEWLLGVTAQ---SFDPQAHTVALSDGRTLPYGTLVLATGAAP 113

Query: 112 -KDPVPKT--------RT--------ERLNQYQ------AGPTGVELA------GEIAVD 142
              P  +         RT          L           G  G+ELA      G     
Sbjct: 114 RALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG----- 168

Query: 143 FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS 201
                V+LV    RL+         D    +  ++ VD++    V            L  
Sbjct: 169 ---VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV----TGSVDGVVLLD 221

Query: 202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260
            G  I AD   +  G        +       L     + VD   R     +++A+GD+T
Sbjct: 222 DGTRIAADMVVVGIGVLANDALARAA----GLACDDGIFVDAYGRT-TCPDVYALGDVT 275

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 60/301 (19%), Positives = 109/301 (36%), Gaps = 78/301 (25%)

Query: 15  RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF-------------EIT-WASLRAM 57
           +V+V+G    G        +L   A++   +  ++              ++    S+R M
Sbjct: 2   KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61

Query: 58  VEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-----TAEGRRVVYDYLVIATGHK 112
                  R V    +   N  I A   I   E++V      + E R   YD L+I+ G  
Sbjct: 62  TGEKMESRGV----NVFSNTEITA---IQPKEHQVTVKDLVSGEERVENYDKLIISPGAV 114

Query: 113 DPVP-------------KTR--TERLNQYQ------------AGPTGVELAGEIAVDFPE 145
                            + R    +L Q              +G  G+E A        E
Sbjct: 115 PFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAA--------E 166

Query: 146 ------KKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 198
                 KKVT++    R L  ++  +  D   + + +  + +  GE V      +G    
Sbjct: 167 AFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVE-RYEGDGRVQK 225

Query: 199 LTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 257
           + +  +  +AD   +  G +P  + WLK T+    L  +G++  DE +R   + ++FA+G
Sbjct: 226 VVTDKNAYDADLVVVAVGVRPN-TAWLKGTL---ELHPNGLIKTDEYMRT-SEPDVFAVG 280

Query: 258 D 258
           D
Sbjct: 281 D 281

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 64/293 (21%), Positives = 109/293 (37%), Gaps = 64/293 (21%)

Query: 14  KRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWAS---------------LR 55
           K+VV+IGGG AG   A   K L+   DV + +  E+  ++ A                L 
Sbjct: 4   KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW--VSHAPCGIPYVVEGLSTPDKLM 61

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL-TAEGRRVVYDYLVIATG---- 110
                 F K+  I   D  +N  ++    ++     V      +   +DYLV A G    
Sbjct: 62  YYPPEVFIKKRGI---DLHLNAEVIE---VDTGYVRVRENGGEKSYEWDYLVFANGASPQ 115

Query: 111 -------HKDPVPKTRT--------ERLNQYQ--------AGPTGVELAGEIAVDFPEKK 147
                  +   V             E + +Y+         G  G+E+A E A     K 
Sbjct: 116 VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA-E-AFAAQGKN 173

Query: 148 VTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI 206
           VT++ +G R+L      +  D   + L  K V+++L E        E     + +     
Sbjct: 174 VTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITM-KIEGEERVEKVVTDAGEY 231

Query: 207 NADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
            A+   L TG KP   +  K   ++  +   G +  +E ++    +N++A GD
Sbjct: 232 KAELVILATGIKP-NIELAKQLGVR--IGETGAIWTNEKMQT-SVENVYAAGD 280

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 63.7 bits (156), Expect = 8e-12
 Identities = 63/289 (21%), Positives = 108/289 (37%), Gaps = 63/289 (21%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE------------YF--EITWASLRAMVE 59
            +VV++G G  G  +AK L  + +VT+ID KE            Y    I    L     
Sbjct: 9   SKVVIVGNGPGGFELAKQLSQTYEVTVID-KEPVPYYSKPMLSHYIAGFIPRNRL-FPYS 66

Query: 60  PSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT- 118
             + ++      +  +         I+     V+T +G  V YD LV+ATG +   P+  
Sbjct: 67  LDWYRK---RGIEIRLAEEAKL---IDRGRKVVITEKGE-VPYDTLVLATGARAREPQIK 119

Query: 119 --------RT----ERLNQYQ----------AGPTGVELAGEIAVDFPEKKVTLVHKGSR 156
                   RT    +R+ +             G  G+ELAG +A       V L+H+G+ 
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGAM 177

Query: 157 LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 216
            L     +  +  +D L    V   L        + E ++  + +    I         G
Sbjct: 178 FLGL-DEELSNMIKDMLEETGVKFFLN-----SELLEANEEGVLTNSGFIEGKVKICAIG 231

Query: 217 -KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
             P         + + S + T   +++D+N R    K+++AIGD  +  
Sbjct: 232 IVP------NVDLARRSGIHTGRGILIDDNFRT-SAKDVYAIGDCAEYS 273

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 53/296 (17%), Positives = 98/296 (33%), Gaps = 60/296 (20%)

Query: 12  KNKRVVVIGGGVAGSLVAKSL---QFSADVTLI--DPK---------EYF--EITWASLR 55
           +   +V+IG G+AG  +A+          + +I  D             F        L 
Sbjct: 3   ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA 62

Query: 56  AMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG---HK 112
                +  ++    +   L + R+     I+   ++ +      V Y  LV+A G    +
Sbjct: 63  MAEPGAMAEQ---LNARILTHTRVT---GID-PGHQRIWIGEEEVRYRDLVLAWGAEPIR 115

Query: 113 DPVPKT--------RT----ERLNQY-QAGPTGVELAG-----EIAVDFPE--KKVTLVH 152
            PV                  R  Q        + L       E A D      ++ +V 
Sbjct: 116 VPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVA 175

Query: 153 KGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LTSTGDTINAD 209
              +++   + P A    +  L    V   LG    L S+ +  +      S G+ I  D
Sbjct: 176 PCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLG--PVLASLKKAGEGLEAHLSDGEVIPCD 233

Query: 210 CHFLCTG-KPVGSDWLKDTILKDS-LDTHGMLMVDENLRVKGQKNIFAIGDITDIR 263
                 G +P      +  +   + L  +  ++VD +LR     NI+A+GD  ++ 
Sbjct: 234 LVVSAVGLRP------RTELAFAAGLAVNRGIVVDRSLRT-SHANIYALGDCAEVD 282

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 22/127 (17%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQFSADVTL------------IDPKEYFEITWASLRAMVE 59
              RV +IGGG +G+ +   +   A+ T             +D +  FE      +A  E
Sbjct: 162 AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221

Query: 60  ------PSFGKRSVINHTDYL---VNGRIVASPAI-NITENEVLTAEGRRVVYDYLVIAT 109
                 P  G   ++     L     G + A P     +   +  A+G    +D ++  T
Sbjct: 222 GREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCT 281

Query: 110 GHKDPVP 116
           G +  + 
Sbjct: 282 GFRPALS 288

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 43/212 (20%)

Query: 77  GRIVASPAINITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRTERLNQY 126
            R     ++ +  NE      R V++D  ++ATG           K+    T TE L   
Sbjct: 117 ARFKDDQSLTVRLNE---GGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASD 173

Query: 127 Q---------AGPTGVELA------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRD 171
                     +    +ELA      G         KVT++   + L     P  G+    
Sbjct: 174 TIPERLAVIGSSVVALELAQAFARLG--------SKVTVLA-RNTLFFREDPAIGEAVTA 224

Query: 172 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTI-L 229
              ++ ++V    +          +  LT+T   + AD   + TG  P       D   +
Sbjct: 225 AFRAEGIEVLEHTQA-SQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALDAAGV 283

Query: 230 KDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 261
              ++  G +++D+ +R     NI+A GD TD
Sbjct: 284 T--VNAQGAIVIDQGMRTS-NPNIYAAGDCTD 312

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 132 GVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-L 188
            +E AG I  A      +V L ++G  +L     +   +  + L +  ++V+  E    +
Sbjct: 199 SIEFAG-IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKV 257

Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENLR 246
              ++G+   +  +G   + D   L  G  P      L+   ++  +  +G + VD   +
Sbjct: 258 TKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVE--VAKNGAIKVDAYSK 315

Query: 247 VKGQKNIFAIGDITD 261
                NI+AIGD+TD
Sbjct: 316 T-NVDNIYAIGDVTD 329

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 132 GVELAGEI--AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN-L 188
            VE AG I  A   P  KVTL ++ + +L        ++    L +  +++   E    +
Sbjct: 203 SVEFAG-IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKV 261

Query: 189 DSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRV 247
              ++GS      +G T++ D   +  G  P  ++ L+   +   L   G + VDE  R 
Sbjct: 262 SLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR-TNDLQLGNVGVKLTPKGGVQVDEFSRT 320

Query: 248 KGQKNIFAIGDITD 261
               NI+AIGDITD
Sbjct: 321 -NVPNIYAIGDITD 333

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Length = 274

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 12  KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           K+KR+++IGGG V  + + K +     +TL+ P  +  I     + +             
Sbjct: 12  KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71

Query: 71  TDYLVNGRIVASPAINIT----ENEVLTAEGRRVVYDYLVIATGHKD 113
                N     +          ++E L  E     +  ++       
Sbjct: 72  RFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHP 118

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 38/280 (13%), Positives = 92/280 (32%), Gaps = 62/280 (22%)

Query: 12  KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVIN 69
             K++ +       + V ++     + D   I P+E+ EI    +       +       
Sbjct: 28  ARKQIALFDNNTNRNRVTQNSHGFITRDG--IKPEEFKEIGLNEVMK-----YP------ 74

Query: 70  HTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD---PVP-------KT- 118
            + +     +V     +    E++T +  + + + +++ATG ++    +P       K+ 
Sbjct: 75  -SVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSL 133

Query: 119 -----------RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD 167
                      + + L              ++  ++    + +   G+ L          
Sbjct: 134 FSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNW-STDLVIATNGNEL--------SQ 184

Query: 168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS----TGDTINADCHFLCTGKPVGSDW 223
              D L +K + V       L    +G   YL      +G  I     F+       + +
Sbjct: 185 TIMDELSNKNIPVITESIRTL----QGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQF 240

Query: 224 LKDTILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITD 261
           ++    +  L ++G  ++D+  R   K    I+  G+ T 
Sbjct: 241 IEQLGCE--LQSNGTFVIDDFGRTSEKN---IYLAGETTT 275

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 132 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 187
            VE A     + V       TL+++G  +L              +  K + +   + +  
Sbjct: 182 AVEFANIFHGLGVK-----TTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQS 236

Query: 188 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 245
           + + ++G     T     I AD   L  G  P  +   L+   ++   +  G ++VD   
Sbjct: 237 VSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVR--TNELGAIIVDAFS 294

Query: 246 RVKGQKNIFAIGDITD 261
           R      I+A+GD+TD
Sbjct: 295 RT-STPGIYALGDVTD 309

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 14/136 (10%)

Query: 132 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 187
           GVEL G    +          L       L    P   +   + + ++   +        
Sbjct: 179 GVELGGVINGLGAK-----THLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKA 233

Query: 188 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 245
           +   ++GS T     G +   DC     G +P   +  L+   +K   +  G ++VD+  
Sbjct: 234 VVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVK--TNEKGYIVVDKYQ 291

Query: 246 RVKGQKNIFAIGDITD 261
                + I+A+GD T 
Sbjct: 292 NT-NIEGIYAVGDNTG 306

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 132 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 188
           GVE A     + V       TL+H+G  +L            D +++K + +     V  
Sbjct: 203 GVEFANIFHGLGVK-----TTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV-- 255

Query: 189 DSVSEGSDTYL--TSTGDTINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENL 245
             V    + Y    + G TI AD   L TG  P  +  L        ++  G ++VDE +
Sbjct: 256 SQVQSTENCYNVVLTNGQTICADRVMLATGRVPN-TTGLGLERAGVKVNEFGAVVVDEKM 314

Query: 246 RVKGQKNIFAIGDITD 261
                 +I+A+GD+T 
Sbjct: 315 TT-NVSHIWAVGDVTG 329

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 14/136 (10%)

Query: 132 GVELAG---EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN- 187
           G+ELAG       +     VT+V    RLL    P       + + ++ ++  L   V  
Sbjct: 178 GIELAGLLRSFGSE-----VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAA 232

Query: 188 LDSVSEGSDTYLTSTGDTINADCHFLCTG-KPVGSDW-LKDTILKDSLDTHGMLMVDENL 245
           L+  ++G+             D      G  P   D  L+   ++  + ++GM+  D   
Sbjct: 233 LERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE--VQSNGMVPTDAYQ 290

Query: 246 RVKGQKNIFAIGDITD 261
                  ++A+GDIT 
Sbjct: 291 NT-NVPGVYALGDITG 305

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 9/121 (7%)

Query: 147 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV-NLDSVSEGSDTYLTSTGD- 204
           +  ++ +   L      +      D +  + +++  G  V  ++  + G    + +    
Sbjct: 239 RTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN 298

Query: 205 ---TINADCHFLCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 260
               I  D  FL  G +P  ++  K   L   L   G ++V+E L+     N++A+GD+ 
Sbjct: 299 GEMRIETDFVFLGLGEQPRSAELAKILGLD--LGPKGEVLVNEYLQTS-VPNVYAVGDLI 355

Query: 261 D 261
            
Sbjct: 356 G 356

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 3  SRRQQQSEGKNKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEI 49
            R     GK  +++++GGG AG + A    K+LQ +AD+TL+   +   +
Sbjct: 15 VPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL 65

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 39/287 (13%), Positives = 78/287 (27%), Gaps = 65/287 (22%)

Query: 11  GKNKRVVVIGGGVAG---SLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
             + RV+V+G G +G   +       +  DV L +     ++     +    P  G  + 
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGY--DVVLAEAGR--DLGGRVTQESALP--GLSAW 442

Query: 68  INHTDYLVNGRIVASPAINITENEVLTAEG-RRVVYDYLVIATG---------HKDPVPK 117
               +Y     +   P + I     +T +      +++++ ATG                
Sbjct: 443 GRVKEYREA-VLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTAL 501

Query: 118 TRTERLNQYQA-----------------GPTGVELAGEIAVDFPEK--KVTLVHKGSRLL 158
              E +                            L G +A    +K  +V++V  G    
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG---- 557

Query: 159 EFIGPKAGDKTRDWLISKKV---DVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHF 212
             +     +      I +++    V       + +V  G  T   +       +  D   
Sbjct: 558 AQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVV 617

Query: 213 LCTG-KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD 258
           + T   P          L   L                  ++  IGD
Sbjct: 618 MVTARLP-------REELYLDLVARR--------DAGEIASVRGIGD 649

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSV 67
           ++ + K VV+IG G+ G               ++D +         L   VE   G    
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-LDKLPEAVERHTGS--- 56

Query: 68  INHTDYLVNG--RIVASPAINITENEVLTAEGRRV 100
               D  +     IVASP I +    +  A    +
Sbjct: 57  --LNDEWLMAADLIVASPGIALAHPSLSAAADAGI 89

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 41/151 (27%)

Query: 129 GPTGVE----LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 184
           G +G      ++         K VT++    +          +     +  + +   +  
Sbjct: 164 GNSGAIAAISMSE-YV-----KNVTIIEYMPKY------MCENAYVQEIKKRNIPYIM-- 209

Query: 185 RVNLDSVSE---GSDTYLTS-------TGD--TINADCHFLCTGKPVGSDWLKDTILKDS 232
               ++      G    +T        TG+   I  D  F+  G    + +LKD+ +K  
Sbjct: 210 ----NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVK-- 263

Query: 233 LDTHGMLMVDENLR--VKGQKNIFAIGDITD 261
           LD  G ++VD   R  V G   ++A GD+T 
Sbjct: 264 LDERGYIVVDSRQRTSVPG---VYAAGDVTS 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.98
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.98
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.98
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.98
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.98
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.98
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.98
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.97
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.97
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.97
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.97
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.97
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.97
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.97
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.97
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.97
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.97
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.97
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.97
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.97
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.97
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.97
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.97
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.96
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.96
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.96
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.96
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.96
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.95
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.95
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.94
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.94
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.92
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.92
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.92
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.92
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.92
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.91
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.91
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.91
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.9
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.89
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.88
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.85
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.85
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.84
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.81
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.75
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.62
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.51
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.5
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.49
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.43
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.41
3dme_A	369	Conserved exported protein; structural genomics, P	99.4
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.36
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.35
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.34
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.34
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.34
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.33
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.32
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.32
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.31
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.29
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.29
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.28
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.28
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.28
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.27
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.25
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.24
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.24
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.22
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.22
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.22
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.22
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.21
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.21
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.2
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.17
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.17
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.17
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.17
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.15
3atr_A	453	Conserved archaeal protein; saturating double bond	99.14
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.13
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.12
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.11
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.11
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.1
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.1
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.08
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.08
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.07
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.07
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.05
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.05
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.03
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.02
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.99
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.96
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.95
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.93
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.92
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.91
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.9
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.9
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.9
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.89
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.87
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.86
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.84
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.84
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.82
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.79
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.78
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.77
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.75
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.73
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.73
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.72
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.62
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.58
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.57
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.56
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.56
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.53
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.52
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.51
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.5
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.48
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.47
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.44
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.37
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.36
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.35
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.33
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.3
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.28
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.24
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.18
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.17
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.17
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.14
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.13
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.12
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.09
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.06
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.06
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.05
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.02
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.99
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.98
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.98
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.97
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.95
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.95
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.95
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.94
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.93
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.93
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.92
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.92
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.92
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.91
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.89
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.89
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.88
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.83
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.82
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.81
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.8
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.79
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.77
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.76
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.76
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.75
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.75
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.73
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.72
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.72
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.72
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.71
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.7
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.69
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.67
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.67
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.66
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.65
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.64
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.61
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.59
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.59
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.58
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.57
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.57
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.55
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.55
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.55
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.55
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.55
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.54
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.51
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.51
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.51
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.5
4dna_A	463	Probable glutathione reductase; structural genomic	97.49
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.49
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.48
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.47
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.47
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.47
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.46
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.46
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.44
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.44
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.42
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.41
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.4
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.38
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.38
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.37
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.35
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.35
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.31
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.31
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.27
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.26
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.26
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.25
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.22
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.21
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.19
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.12
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.07
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.07
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.06
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.06
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.93
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.91
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.83
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.81
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.78
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.74
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.58
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	96.4
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.4
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	96.39
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.33
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.29
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.22
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.21
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.15
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.15
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	96.14
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.14
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.06
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.98
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.97
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.89
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.88
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.82
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.82
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.8
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.79
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	95.75
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.68
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.67
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.63
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.62
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.57
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.5
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.49
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.46
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.46
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.43
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.3
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.28
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.23
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.23
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.22
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.2
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	95.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.15
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.13
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.12
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.08
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.05
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.02
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.01
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.01
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.94
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.92
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.91
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.87
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.84
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.83
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.8
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.77
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.72
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.66
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.65
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.6
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.57
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.56
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.55
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	94.53
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.52
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.51
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.51
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.46
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.44
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.44
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.4
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.39
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.37
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.36
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.35
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.34
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.3
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.26
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.24
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.22
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.22
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.13
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.12
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.08
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.07
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.03
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.01
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.98
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.98
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.97
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.96
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.93
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.87
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.84
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.78
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.74
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.74
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.73
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.73
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.73
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.71
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.69
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.68
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.63
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.61
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.58
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.58
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	93.54
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.52
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.44
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.41
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.4
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	93.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.37
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.36
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.33
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.33
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	93.32
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.3
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.29
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.29
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.28
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.27
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.26
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	93.26
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.15
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	93.12
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.92
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	92.92
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.87
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.83
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.8
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.78
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.69
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	92.64
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.63
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.62
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.62
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.6
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	92.59
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.53
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.52
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	92.45
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.42
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.39
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.38
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.37
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	92.36
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	92.36
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.25
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	92.2
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.19
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	92.18
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.17
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	92.16
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	92.15
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.14
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	92.11
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.09
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	92.06
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	92.01
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.01
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.99
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	91.98
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.97
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.96
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	91.91
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	91.79
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	91.78
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.77
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	91.73
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	91.71
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.63
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	91.63
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.62
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.61
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	91.55
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	91.54
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.47
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	91.47
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	91.46
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.44
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.4
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	91.34
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.33

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.9e-35  Score=250.12  Aligned_cols=251  Identities=20%  Similarity=0.199  Sum_probs=188.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee------------------ec-------CCccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA------------------MV-------EPSFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~------------------~~-------~~~~~~~   65 (274)
                      .++||+|||||++|+++|+.|++ |++|+|+|| +.+|+.|.....                  ..       ...+...
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWA   82 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHH
Confidence            45899999999999999999985 999999999 556654321000                  00       0000000


Q ss_pred             eee--------e----ccccc--cccEEEEEeeEEEecCeEEe-CCCeEEecCEEEEccCCCCC-CChhH-------HHH
Q 023975           66 SVI--------N----HTDYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDP-VPKTR-------TER  122 (274)
Q Consensus        66 ~~~--------~----~~~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~li~a~G~~~~-~~~~~-------~~~  122 (274)
                      ...        .    ...++  .+++++......++.+.+.+ .++..+.||++++|||..|. .|..+       ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  162 (463)
T 4dna_A           83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNE  162 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccccHHH
Confidence            000        0    00011  24666666666666667777 57788999999999998877 65432       122


Q ss_pred             HHH----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          123 LNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       123 ~~~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      +..          +++|.+++|++..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|+++++++.|.+++.+
T Consensus       163 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~  240 (463)
T 4dna_A          163 AFDLPALPESILIAGGGYIAVEFANIFH--GLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD  240 (463)
T ss_dssp             HTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEC
T ss_pred             HhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEc
Confidence            222          334889999999998  56889999999999888889999999999999999999999999999876


Q ss_pred             CCc-eeEE-CCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          193 EGS-DTYL-TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       193 ~~~-~~v~-~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      ++. +.+. +++|+ +++|.||+|+|+.|+..++.....++.++++|++.||++++| +.|+||++|||++.+...+
T Consensus       241 ~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~~~  315 (463)
T 4dna_A          241 ADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRVQLTP  315 (463)
T ss_dssp             TTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSGGGSSCCCHH
T ss_pred             CCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCC-CCCCEEEEEecCCCCCChH
Confidence            554 6788 88997 999999999999999887433334446788999999999998 8999999999998665543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=3.5e-34  Score=240.53  Aligned_cols=246  Identities=23%  Similarity=0.321  Sum_probs=187.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCc--EEEEcCCCCceeeccceee-ecCCccccceeeecccccc--ccEEEEE-eeE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYLV--NGRIVAS-PAI   85 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~--v~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~   85 (274)
                      +++|+|||||++|+++|..|+ +|++  |+|+|+++.+++....+.. .+.............+++.  ++++... .+.
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~   81 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVT   81 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEE
T ss_pred             CCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEE
Confidence            369999999999999999997 4776  9999999887654333322 1111111111122223322  5676665 555


Q ss_pred             EEec--CeEEeCCCeEEecCEEEEccCCCCCCChhH---------------HHHHH----------HccCCchhhhHHHH
Q 023975           86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLN----------QYQAGPTGVELAGE  138 (274)
Q Consensus        86 ~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------~~~~~----------~~~~g~~~~e~a~~  138 (274)
                      .++.  +.+.+.++.++.||++++|||+.|..|+++               ...+.          .+++|.+++|+|..
T Consensus        82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~  161 (410)
T 3ef6_A           82 ALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT  161 (410)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred             EEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence            5654  478888898999999999999885544211               11121          13448999999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          139 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +.  ..+.+++++.+.+.+++ ..++.+.+.+.+.+++.||++++++.|++++.++....+++.+|++++||.||+|+|.
T Consensus       162 l~--~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~  239 (410)
T 3ef6_A          162 AR--KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGA  239 (410)
T ss_dssp             HH--HTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred             HH--hCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence            98  56899999999988776 4677888999999999999999999999998766556789999999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .|+.+++...++.  .+  +++.||++++| +.|+||++|||+..+..
T Consensus       240 ~p~~~l~~~~gl~--~~--~gi~vd~~~~t-~~~~IyA~GD~a~~~~~  282 (410)
T 3ef6_A          240 EPADQLARQAGLA--CD--RGVIVDHCGAT-LAKGVFAVGDVASWPLR  282 (410)
T ss_dssp             EECCHHHHHTTCC--BS--SSEECCTTSBC-SSTTEEECGGGEEEEBT
T ss_pred             eecHHHHHhCCCc--cC--CeEEEccCeeE-CCCCEEEEEcceeccCC
Confidence            9999988877763  33  45999999998 89999999999987764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=3.8e-35  Score=249.15  Aligned_cols=248  Identities=20%  Similarity=0.255  Sum_probs=185.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecccee--------------eecC---Cccccc---eeeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR--------------AMVE---PSFGKR---SVINH   70 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~--------------~~~~---~~~~~~---~~~~~   70 (274)
                      .++||+|||||++|+++|+.|++ |++|+|+|++ .+|+.|....              ....   ..+...   ....+
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~   81 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW   81 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence            35899999999999999999974 9999999998 4555432110              0000   000000   00000


Q ss_pred             ------------------ccc--ccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhH-------HHHH
Q 023975           71 ------------------TDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------TERL  123 (274)
Q Consensus        71 ------------------~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~-------~~~~  123 (274)
                                        ...  ..+++++......++.+.+.+ ++.++.||++++|||+.|..|+++       ...+
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~g~~~~~~~~~~  160 (450)
T 1ges_A           82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGGRPSHPDIPGVEYGIDSDGF  160 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE-TTEEEEEEEEEECCCEEECCCCSTTGGGSBCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE-CCEEEEeCEEEECCCCCCCCCCCCCccceecHHHh
Confidence                              000  125677776666667677777 677899999999999886655322       1222


Q ss_pred             HH----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          124 NQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       124 ~~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                      ..          +++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|++++++++|.+++.++
T Consensus       161 ~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~  238 (450)
T 1ges_A          161 FALPALPERVAVVGAGYIGVELGGVIN--GLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT  238 (450)
T ss_dssp             HHCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECT
T ss_pred             hhhhhcCCeEEEECCCHHHHHHHHHHH--hcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC
Confidence            22          334899999999998  568999999999988888889999999999999999999999999998655


Q ss_pred             C-ceeEECCCCcEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          194 G-SDTYLTSTGDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       194 ~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      + ...+.+.+|+++++|.||+|+|..|+.+++  ...++  .++++|++.||++++| +.|+|||+|||++.+...
T Consensus       239 ~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~~  311 (450)
T 1ges_A          239 DGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGV--KTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAVELT  311 (450)
T ss_dssp             TSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECSGGGTSCCCH
T ss_pred             CcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCc--eECCCCCEeECCCCcc-CCCCEEEEeccCCCCccH
Confidence            4 367888899899999999999999998754  44444  6678899999999998 899999999999765443

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=2.2e-35  Score=253.14  Aligned_cols=253  Identities=21%  Similarity=0.222  Sum_probs=186.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--cCCcEEEEc--------CCCCceeeccceee------------------ecCC---
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLID--------PKEYFEITWASLRA------------------MVEP---   60 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie--------~~~~~g~~~~~~~~------------------~~~~---   60 (274)
                      +++||+|||||++|+++|+.|+  .|++|+|||        +...+|+.|.....                  ....   
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            3589999999999999999996  499999999        35566654422100                  0000   


Q ss_pred             ------ccccceeee------------ccccc--c-ccEEEEEeeEEEecCeEEeC---C-----CeEEecCEEEEccCC
Q 023975           61 ------SFGKRSVIN------------HTDYL--V-NGRIVASPAINITENEVLTA---E-----GRRVVYDYLVIATGH  111 (274)
Q Consensus        61 ------~~~~~~~~~------------~~~~~--~-~~~~~~~~~~~~~~~~v~~~---~-----~~~~~~~~li~a~G~  111 (274)
                            .........            +...+  . +++++...+..++.+.+.++   +     +..+.||++|+|||+
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs  165 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGS  165 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCC
Confidence                  000000000            00001  2 56777777666777767665   4     678999999999999


Q ss_pred             CCCCChhHH-------HHHH----------HccCCchhhhHHHHhhhhCC-CCeEEEEeCCCccCCcCChhHHHHHHHHH
Q 023975          112 KDPVPKTRT-------ERLN----------QYQAGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWL  173 (274)
Q Consensus       112 ~~~~~~~~~-------~~~~----------~~~~g~~~~e~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  173 (274)
                      .|..|+++.       ..+.          .+++|.+++|+|..+....+ +.+|+++.+.+.+++.+++.+.+.+.+.+
T Consensus       166 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l  245 (495)
T 2wpf_A          166 WPQMPAIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQL  245 (495)
T ss_dssp             EECCCCCTTGGGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHH
T ss_pred             CcCCCCCCCccccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence            866554221       2221          23448999999999985333 88999999999999888999999999999


Q ss_pred             HhCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCC
Q 023975          174 ISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN  252 (274)
Q Consensus       174 ~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  252 (274)
                      ++.||++++++.|.+++.+++ ...+.+.+|+++++|.||+|+|..|+.+++....+++.++++|+|.||++++| +.|+
T Consensus       246 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t-~~~~  324 (495)
T 2wpf_A          246 TANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRT-NVPN  324 (495)
T ss_dssp             HHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBC-SSTT
T ss_pred             HhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCcc-CCCC
Confidence            999999999999999986654 46788889989999999999999999885432333346777899999999998 8999


Q ss_pred             eEEeccccCCCCC
Q 023975          253 IFAIGDITDIRVS  265 (274)
Q Consensus       253 i~~~Gd~~~~~~~  265 (274)
                      |||+|||++.+..
T Consensus       325 IyA~GD~~~~~~l  337 (495)
T 2wpf_A          325 IYAIGDITDRLML  337 (495)
T ss_dssp             EEECGGGGCSCCC
T ss_pred             EEEEeccCCCccC
Confidence            9999999986543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=1.9e-35  Score=253.25  Aligned_cols=251  Identities=22%  Similarity=0.249  Sum_probs=189.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee---------------------e-cC---Cccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---------------------M-VE---PSFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~---------------------~-~~---~~~~~~   65 (274)
                      .++||+|||||++|+++|+.|+ .|++|+|+|| +.+|+.+.....                     + +.   ..+...
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~  103 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE  103 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence            3589999999999999999998 5999999999 556654321100                     0 00   000000


Q ss_pred             eee--------e----cccc--ccccEEEEEeeEEEecCeEEeC-CCeEEecCEEEEccCCCCC-CChhHHH--------
Q 023975           66 SVI--------N----HTDY--LVNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDP-VPKTRTE--------  121 (274)
Q Consensus        66 ~~~--------~----~~~~--~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~li~a~G~~~~-~~~~~~~--------  121 (274)
                      ...        .    ....  ..+++++......++...+.+. ++..+.||++++|||..|. .|..+..        
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~~~~~  183 (484)
T 3o0h_A          104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCLTSNE  183 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSBCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccccHHH
Confidence            000        0    0001  1256677777777777777776 7778999999999998876 5542211        


Q ss_pred             ---------HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          122 ---------RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       122 ---------~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                               .+..+++|.+++|++..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|++++.+++|++++.+
T Consensus       184 ~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~  261 (484)
T 3o0h_A          184 IFDLEKLPKSIVIVGGGYIGVEFANIFH--GLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST  261 (484)
T ss_dssp             GGGCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEEC
T ss_pred             HHhHHhcCCcEEEECcCHHHHHHHHHHH--HcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEee
Confidence                     1122344889999999988  56889999999999888889999999999999999999999999999988


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      ++.+.+.+.+|+++++|.||+|+|..|+..++.....++.++++|++.||++++| +.|+||++|||++.+...
T Consensus       262 ~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  334 (484)
T 3o0h_A          262 ENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHIQLT  334 (484)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGTSCCCH
T ss_pred             CCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCC-CCCCEEEEEecCCCCcCH
Confidence            7778889999999999999999999999887433333446788899999999998 899999999999866544

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=3.4e-34  Score=244.05  Aligned_cols=250  Identities=22%  Similarity=0.281  Sum_probs=186.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee-----------------------eecCC--ccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-----------------------AMVEP--SFGKR   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~-----------------------~~~~~--~~~~~   65 (274)
                      .++||+|||||++|+++|+.|+ .|++|+|||++ .+|+.|....                       .+...  .....
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   81 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP   81 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence            3589999999999999999997 59999999998 5555442110                       00000  00000


Q ss_pred             eeee------------cccc--ccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhH-------HHHHH
Q 023975           66 SVIN------------HTDY--LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------TERLN  124 (274)
Q Consensus        66 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~-------~~~~~  124 (274)
                      ....            +...  ..+++++......++.+.+.+ ++.++.||++|+|||+.|..|+++       ...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~-~g~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~  160 (463)
T 2r9z_A           82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV-EGQRLSADHIVIATGGRPIVPRLPGAELGITSDGFF  160 (463)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE-TTEEEEEEEEEECCCEEECCCSCTTGGGSBCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE-CCEEEEcCEEEECCCCCCCCCCCCCccceecHHHHh
Confidence            0000            0000  124677766666666677777 677899999999999886655322       12222


Q ss_pred             H----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975          125 Q----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  194 (274)
Q Consensus       125 ~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  194 (274)
                      .          +++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|++++++++|++++.+++
T Consensus       161 ~~~~~~~~vvVvGgG~~g~e~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~  238 (463)
T 2r9z_A          161 ALQQQPKRVAIIGAGYIGIELAGLLR--SFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQ  238 (463)
T ss_dssp             HCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETT
T ss_pred             hhhccCCEEEEECCCHHHHHHHHHHH--hcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC
Confidence            2          344899999999998  5689999999999888888888999999999999999999999999987655


Q ss_pred             ceeEECCCCc-EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          195 SDTYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       195 ~~~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      ...+.+++|+ ++++|.||+|+|..|+.+++.....++.++++|+|.||++++| +.|+||++|||++.+...
T Consensus       239 ~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  310 (463)
T 2r9z_A          239 GTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNT-NVPGVYALGDITGRDQLT  310 (463)
T ss_dssp             EEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBC-SSTTEEECGGGGTSCCCH
T ss_pred             eEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCcc-CCCCEEEEeecCCCcccH
Confidence            6778888998 8999999999999999875422223336678899999999998 899999999999765443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=1.1e-33  Score=240.42  Aligned_cols=244  Identities=20%  Similarity=0.205  Sum_probs=178.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCccc--cceeeecccccc--ccEEE-EEeeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYLV--NGRIV-ASPAI   85 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~-~~~~~   85 (274)
                      +||+|||||++|+++|+.|+ .  |++|+|||+++.+++.+..+.........  ........+++.  ++++. ...+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            69999999999999999997 3  89999999999887555443333222211  111111111111  33442 23334


Q ss_pred             EEec--CeEEe---CCCeEEecCEEEEccCCCCCCChhHH---------------H----------HHHHccCCchhhhH
Q 023975           86 NITE--NEVLT---AEGRRVVYDYLVIATGHKDPVPKTRT---------------E----------RLNQYQAGPTGVEL  135 (274)
Q Consensus        86 ~~~~--~~v~~---~~~~~~~~~~li~a~G~~~~~~~~~~---------------~----------~~~~~~~g~~~~e~  135 (274)
                      .++.  +.+..   .++..+.||++++|||+.|..|+.+.               .          ++..+++|.+++|+
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~  162 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEA  162 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHH
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence            4443  34433   25568999999999999876553211               0          11223458999999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEc
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  214 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  214 (274)
                      |..+.  ..+.+++++.+.+.+++. +++.+.+.+.+.+++.||++++++.|++++..++.+.+.++++ +++||.||+|
T Consensus       163 A~~l~--~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          163 IDFLV--KMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             HHHHH--HTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEEC
T ss_pred             HHHHH--hCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEEC
Confidence            99998  568999999999998875 7899999999999999999999999999986666667777777 8999999999


Q ss_pred             ccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          215 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       215 ~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +|+.|+.+++...   +.++++|++.||++++| +.|+|||+|||++.+.
T Consensus       240 ~G~~p~~~~l~~~---~~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~  285 (452)
T 3oc4_A          240 LNLHPQLAYLDKK---IQRNLDQTIAVDAYLQT-SVPNVFAIGDCISVMN  285 (452)
T ss_dssp             SCCBCCCSSCCTT---SCBCTTSCBCCCTTCBC-SSTTEEECGGGBCEEE
T ss_pred             cCCCCChHHHHhh---hccCCCCCEEECcCccC-CCCCEEEEEeeEEecc
Confidence            9999999887543   36778999999999999 8999999999998753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=3.3e-34  Score=245.79  Aligned_cols=250  Identities=18%  Similarity=0.192  Sum_probs=187.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccce------------------eeecCCccc-cceeeecc-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASL------------------RAMVEPSFG-KRSVINHT-   71 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~------------------~~~~~~~~~-~~~~~~~~-   71 (274)
                      ++||+||||||+|+++|..|++ |++|+|+|++. +|+.+...                  .......+. ......+. 
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   86 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA   86 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence            5899999999999999999985 99999999975 55443110                  000000000 00000000 


Q ss_pred             --------------------ccccccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH---------HH
Q 023975           72 --------------------DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------ER  122 (274)
Q Consensus        72 --------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~---------~~  122 (274)
                                          ......+++.......+.+.+.++++.++.||++|+|||+.|..|+...         ..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~~~v~t~~~  166 (492)
T 3ic9_A           87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDN  166 (492)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTGGGEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccCCcEEcHHH
Confidence                                0011233455555556667888888889999999999999998887321         11


Q ss_pred             HH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          123 LN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       123 ~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      +.          .+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++. |++++++.+++++.+
T Consensus       167 ~~~~~~~~k~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~  243 (492)
T 3ic9_A          167 LFELNDLPKSVAVFGPGVIGLELGQALS--RLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEK  243 (492)
T ss_dssp             HTTCSSCCSEEEEESSCHHHHHHHHHHH--HTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEEC
T ss_pred             HhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEc
Confidence            21          1334899999999998  5689999999999999888999999999999988 999999999999887


Q ss_pred             CCceeEECC--CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeC-CCccccCCCCeEEeccccCCCCCCC
Q 023975          193 EGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       193 ~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      ++.+.+.+.  +|  +++++|.||+|+|..|+.+++.....++.++++|++.|| ++++| +.|+|||+|||++.+...+
T Consensus       244 ~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t-~~~~IyA~GD~~~~~~~~~  322 (492)
T 3ic9_A          244 EDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQT-SVDHIFVAGDANNTLTLLH  322 (492)
T ss_dssp             SSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBC-SSTTEEECGGGGTSSCSHH
T ss_pred             CCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccC-CCCCEEEEEecCCCCccHH
Confidence            777777664  67  689999999999999999885434444578889999999 89999 8999999999998776543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=8.2e-35  Score=249.41  Aligned_cols=250  Identities=18%  Similarity=0.189  Sum_probs=185.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh--cCCcEEEEc--------CCCCceeeccceee-----------------------ecC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLID--------PKEYFEITWASLRA-----------------------MVE   59 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie--------~~~~~g~~~~~~~~-----------------------~~~   59 (274)
                      ++||+|||||++|+++|+.|+  .|++|+|||        +...+|+.+.....                       ...
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            589999999999999999995  499999999        35556654322100                       000


Q ss_pred             --C--ccccceeee------------cccc--cc-ccEEEEEeeEEEecCeEEeC-----CC---eEEecCEEEEccCCC
Q 023975           60 --P--SFGKRSVIN------------HTDY--LV-NGRIVASPAINITENEVLTA-----EG---RRVVYDYLVIATGHK  112 (274)
Q Consensus        60 --~--~~~~~~~~~------------~~~~--~~-~~~~~~~~~~~~~~~~v~~~-----~~---~~~~~~~li~a~G~~  112 (274)
                        .  .+.......            ....  .. +++++...+..++.+.+...     ++   ..+.||++|+|||+.
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~  162 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSW  162 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCC
Confidence              0  000000000            0001  12 56777777767777766653     56   689999999999998


Q ss_pred             CCCChhH-------HHHH----------HHccCCchhhhHHHHhhhhCC-CCeEEEEeCCCccCCcCChhHHHHHHHHHH
Q 023975          113 DPVPKTR-------TERL----------NQYQAGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTRDWLI  174 (274)
Q Consensus       113 ~~~~~~~-------~~~~----------~~~~~g~~~~e~a~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (274)
                      |..|+++       ...+          ..+++|.+++|+|..+....+ +.+++++.+.+.+++.+++.+.+.+.+.++
T Consensus       163 p~~p~i~g~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~  242 (490)
T 1fec_A          163 PQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLR  242 (490)
T ss_dssp             ECCCCSBTGGGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCccceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHH
Confidence            6655422       1122          123458999999999984322 889999999999998889999999999999


Q ss_pred             hCCcEEEcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCC
Q 023975          175 SKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQK  251 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~  251 (274)
                      +.||++++++.|++++.+++ .+.+.+++|+++++|.||+|+|..|+.+++  ...++  .++++|+|.||++++| +.|
T Consensus       243 ~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl--~~~~~G~I~Vd~~~~t-~~~  319 (490)
T 1fec_A          243 ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV--EVAKNGAIKVDAYSKT-NVD  319 (490)
T ss_dssp             HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTC--CBCTTSCBCCCTTCBC-SST
T ss_pred             hCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCc--cCCCCCCEEECCCCcc-CCC
Confidence            99999999999999987654 467888889899999999999999998754  44444  6778899999999998 899


Q ss_pred             CeEEeccccCCCCC
Q 023975          252 NIFAIGDITDIRVS  265 (274)
Q Consensus       252 ~i~~~Gd~~~~~~~  265 (274)
                      +|||+|||++.+..
T Consensus       320 ~IyA~GD~~~~~~l  333 (490)
T 1fec_A          320 NIYAIGDVTDRVML  333 (490)
T ss_dssp             TEEECGGGGCSCCC
T ss_pred             CEEEEeccCCCccC
Confidence            99999999976543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=1e-34  Score=248.02  Aligned_cols=249  Identities=16%  Similarity=0.179  Sum_probs=183.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----------------------cC----Ccccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----------------------VE----PSFGK   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----------------------~~----~~~~~   64 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|+|+++.+|+.|......                       +.    .....
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS   81 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            489999999999999999997 499999999998877654311000                       00    00000


Q ss_pred             ceeee------------ccccc--cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhH-------
Q 023975           65 RSVIN------------HTDYL--VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR-------  119 (274)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~-------  119 (274)
                      .....            ...++  .+++++......++.+  .+.+.+|  ..+.||++|+|||+.|..|+..       
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v  161 (468)
T 2qae_A           82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV  161 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence            00000            01111  2466666666556655  4455567  7899999999999886554311       


Q ss_pred             --HHHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHH-HhCCcEEEcCcee
Q 023975          120 --TERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERV  186 (274)
Q Consensus       120 --~~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v  186 (274)
                        ...+.          .+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+ ++.||+++++++|
T Consensus       162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v  239 (468)
T 2qae_A          162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWA--RLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKV  239 (468)
T ss_dssp             ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEE
T ss_pred             echHHHhhcccCCceEEEECCCHHHHHHHHHHH--HhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEE
Confidence              12222          2345899999999998  5689999999999999888999999999999 9999999999999


Q ss_pred             eeeccCCCceeEECC--CC--cEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          187 NLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      .+++.+++.+.+.+.  +|  +++++|.||+|+|..|+.+++  ...++  .++++|+|.||++++| +.|+|||+|||+
T Consensus       240 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  316 (468)
T 2qae_A          240 VGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINV--AKNERGFVKIGDHFET-SIPDVYAIGDVV  316 (468)
T ss_dssp             EEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGGB
T ss_pred             EEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCC--ccCCCCCEeECCCccc-CCCCEEEeeccC
Confidence            999876666666655  66  689999999999999998874  44444  5677899999999998 899999999999


Q ss_pred             C-CCCCC
Q 023975          261 D-IRVSA  266 (274)
Q Consensus       261 ~-~~~~~  266 (274)
                      + .+...
T Consensus       317 ~~~~~~~  323 (468)
T 2qae_A          317 DKGPMLA  323 (468)
T ss_dssp             SSSCSCH
T ss_pred             CCCCccH
Confidence            8 55443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=7.4e-33  Score=237.16  Aligned_cols=251  Identities=25%  Similarity=0.308  Sum_probs=180.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccc-cceeeecc----ccccccEEEEEeeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHT----DYLVNGRIVASPAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~   86 (274)
                      ..+|+|||||++|+++|..|++ +++|+|||+++++-+.+- +......... .....+..    ....+++++...+..
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~Pl-L~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~v~~  120 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPL-LPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATS  120 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGG-GGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccc-hhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEEEEE
Confidence            4689999999999999999974 999999999987544321 1111111111 11111111    112356777777777


Q ss_pred             Eec--CeEEe--------------------CCCeEEecCEEEEccCCCCCC---ChhHH---------------HH----
Q 023975           87 ITE--NEVLT--------------------AEGRRVVYDYLVIATGHKDPV---PKTRT---------------ER----  122 (274)
Q Consensus        87 ~~~--~~v~~--------------------~~~~~~~~~~li~a~G~~~~~---~~~~~---------------~~----  122 (274)
                      ++.  +.|.+                    .++.++.||+||+|||+.+..   |+...               ..    
T Consensus       121 ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~  200 (502)
T 4g6h_A          121 INPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAAN  200 (502)
T ss_dssp             EEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHH
T ss_pred             EEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHH
Confidence            663  34443                    346789999999999998554   44210               00    


Q ss_pred             -------------------HHHccCCchhhhHHHHhhhhC------------CCCeEEEEeCCCccCCcCChhHHHHHHH
Q 023975          123 -------------------LNQYQAGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRD  171 (274)
Q Consensus       123 -------------------~~~~~~g~~~~e~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  171 (274)
                                         +..+++|.+|+|+|.++.+..            ...++++++..+.+++.+++.+.+.+.+
T Consensus       201 ~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~  280 (502)
T 4g6h_A          201 LEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQS  280 (502)
T ss_dssp             HHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHH
T ss_pred             HHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHH
Confidence                               112445899999998876421            1358999999999999999999999999


Q ss_pred             HHHhCCcEEEcCceeeeeccCCCceeEECCCCc----EEeecEEEEcccCCCCch---hhcccccccccCCCCcEEeCCC
Q 023975          172 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTGKPVGSD---WLKDTILKDSLDTHGMLMVDEN  244 (274)
Q Consensus       172 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~----~~~~d~vv~a~G~~~~~~---~~~~~~~~~~~~~~g~~~v~~~  244 (274)
                      .+++.||++++++.|++++.+.........+|+    +++||.||+|+|..|++.   +...  ++...+.+|+|.||++
T Consensus       281 ~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~--~~~~~~~~g~I~Vd~~  358 (502)
T 4g6h_A          281 HLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKK--IPEQNSSKRGLAVNDF  358 (502)
T ss_dssp             HHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHH--SGGGTTCCSSEEBCTT
T ss_pred             HHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHh--ccccccCCCceeECCc
Confidence            999999999999999999755444455667764    699999999999998632   2222  2335677899999999


Q ss_pred             ccccCCCCeEEeccccCCCCCC
Q 023975          245 LRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       245 ~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|++++|+|||+|||+..|.++
T Consensus       359 lq~~~~~~IfAiGD~a~~~~p~  380 (502)
T 4g6h_A          359 LQVKGSNNIFAIGDNAFAGLPP  380 (502)
T ss_dssp             SBBTTCSSEEECGGGEESSSCC
T ss_pred             cccCCCCCEEEEEcccCCCCCC
Confidence            9998899999999999877655

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.6e-33  Score=237.20  Aligned_cols=247  Identities=19%  Similarity=0.192  Sum_probs=187.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCc--EEEEcCCCCceeecccee-eecCCcc-ccceeeeccccc--cccEEEEE-e
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD--VTLIDPKEYFEITWASLR-AMVEPSF-GKRSVINHTDYL--VNGRIVAS-P   83 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~--v~vie~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~-~   83 (274)
                      +++||+|||||++|+++|+.|+ +|++  |+|+|+++.+++....+. ..+.... .........+++  .++++... .
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   87 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAE   87 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCE
Confidence            4589999999999999999997 4776  999999988765433332 1221111 111111122222  24566554 4


Q ss_pred             eEEEec--CeEEeCCCeEEecCEEEEccCCCCCCChhH---------------HHHHH-----------HccCCchhhhH
Q 023975           84 AINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERLN-----------QYQAGPTGVEL  135 (274)
Q Consensus        84 ~~~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------~~~~~-----------~~~~g~~~~e~  135 (274)
                      +..++.  +.+.+.++..+.||++++|||+.|..|+.+               ...+.           .+++|.+++|+
T Consensus        88 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~  167 (415)
T 3lxd_A           88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEA  167 (415)
T ss_dssp             EEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHH
T ss_pred             EEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHH
Confidence            555554  378888898999999999999886654311               11111           23458899999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEE
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFL  213 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~  213 (274)
                      |..+.  ..+.+++++.+.+.+++ ..++.+.+.+.+.+++.||++++++.|++++.+++.+ .+.+++|++++||.||+
T Consensus       168 A~~l~--~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~  245 (415)
T 3lxd_A          168 AAVLT--KFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIV  245 (415)
T ss_dssp             HHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEE
T ss_pred             HHHHH--hcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEE
Confidence            99998  56899999999998877 4678899999999999999999999999998766554 68889999999999999


Q ss_pred             cccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          214 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       214 a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |+|..|+.+++...++.  .+ + ++.||++++| +.|+||++|||+..+..
T Consensus       246 a~G~~p~~~l~~~~gl~--~~-~-gi~vd~~~~t-~~~~iyA~GD~a~~~~~  292 (415)
T 3lxd_A          246 GIGIVPCVGALISAGAS--GG-N-GVDVDEFCRT-SLTDVYAIGDCAAHAND  292 (415)
T ss_dssp             CSCCEESCHHHHHTTCC--CS-S-SEECCTTCBC-SSTTEEECGGGEEEECG
T ss_pred             CCCCccChHHHHhCCCC--cC-C-CEEECCCCCc-CCCCEEEEEeeeeecCc
Confidence            99999999988877763  33 4 4999999999 89999999999988764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=4.4e-34  Score=241.42  Aligned_cols=243  Identities=17%  Similarity=0.276  Sum_probs=181.2

Q ss_pred             cEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceeeecCCcccc-c--eeeecccccc--ccEEEE-EeeE
Q 023975           15 RVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFGK-R--SVINHTDYLV--NGRIVA-SPAI   85 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~~~~~~-~~~~   85 (274)
                      +|+|||||+||++||..|++ |  .+|+|||+++...+....+...+...... .  ......+++.  ++++.. ..+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            69999999999999999973 4  68999999887655433332222211111 0  0111111221  444433 2344


Q ss_pred             EEec--CeEEe-----CCCeEEecCEEEEccCCCCCCChhHH------------HH------------HHHccCCchhhh
Q 023975           86 NITE--NEVLT-----AEGRRVVYDYLVIATGHKDPVPKTRT------------ER------------LNQYQAGPTGVE  134 (274)
Q Consensus        86 ~~~~--~~v~~-----~~~~~~~~~~li~a~G~~~~~~~~~~------------~~------------~~~~~~g~~~~e  134 (274)
                      .++.  +.+..     .++.++.||++|+|||+.|..|+.+.            ..            +..+++|.+++|
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E  161 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLE  161 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHH
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhh
Confidence            5543  33332     12346889999999999877665321            11            122445999999


Q ss_pred             HHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEc
Q 023975          135 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLC  214 (274)
Q Consensus       135 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a  214 (274)
                      +|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||+++.++.|++++.    ..+.+++|+++++|.|++|
T Consensus       162 ~A~~l~--~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~----~~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          162 VLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAING----NEITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             HHHHHH--HHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEET----TEEEETTSCEEECSEEEEC
T ss_pred             hHHHHH--hcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecC----CeeeecCCeEEeeeeEEEE
Confidence            999998  5689999999999999999999999999999999999999999998863    2477889999999999999


Q ss_pred             ccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          215 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       215 ~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|..|+.++++..++  .++++|+|.||++++| +.|+|||+|||++.|...
T Consensus       236 ~G~~Pn~~~~~~~gl--~~~~~G~I~vd~~~~T-s~p~IyA~GDva~~~~~~  284 (437)
T 4eqs_A          236 VGTHPNSKFIESSNI--KLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYRH  284 (437)
T ss_dssp             CCEEESCGGGTTSSC--CCCTTSCEECCTTCBC-SSTTEEECGGGEEEEBSS
T ss_pred             eceecCcHHHHhhhh--hhccCCcEecCCCccC-CCCCEEEEEEccCccccc
Confidence            999999998887776  5788999999999999 899999999999877653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-34  Score=242.39  Aligned_cols=248  Identities=19%  Similarity=0.222  Sum_probs=183.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee--------------eecC--Cc--ccc-------ce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------------AMVE--PS--FGK-------RS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~--------------~~~~--~~--~~~-------~~   66 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|||++ .+|+.|....              ....  ..  +..       ..
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   89 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHL   89 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGGC
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccccccC
Confidence            589999999999999999997 59999999998 4555442110              0000  00  000       00


Q ss_pred             eeec------------------cccc--cccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCC-hhH--
Q 023975           67 VINH------------------TDYL--VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVP-KTR--  119 (274)
Q Consensus        67 ~~~~------------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~-~~~--  119 (274)
                      ...+                  ...+  .+++++...+..++..  .+.+.++.  .+.||++|+|||+.|..| +++  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~i~g~  169 (479)
T 2hqm_A           90 TFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF  169 (479)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTTSTTG
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCCCCCc
Confidence            0000                  0011  2466666665555554  34445665  799999999999986665 322  


Q ss_pred             -----HHHHHH----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCc
Q 023975          120 -----TERLNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  184 (274)
Q Consensus       120 -----~~~~~~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~  184 (274)
                           ...+..          +++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||++++++
T Consensus       170 ~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~  247 (479)
T 2hqm_A          170 ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFH--GLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLS  247 (479)
T ss_dssp             GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSC
T ss_pred             ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCC
Confidence                 122222          345899999999998  568999999999998888899999999999999999999999


Q ss_pred             eeeeeccCCCc--eeEECCCC-cEEeecEEEEcccCCCCchh-hcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          185 RVNLDSVSEGS--DTYLTSTG-DTINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       185 ~v~~i~~~~~~--~~v~~~~g-~~~~~d~vv~a~G~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      +|++++.+++.  ..+.+++| +++++|.||+|+|..|+..+ +...++  .++++|++.||++++| +.|+|||+|||+
T Consensus       248 ~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  324 (479)
T 2hqm_A          248 KIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI--KLNSHDQIIADEYQNT-NVPNIYSLGDVV  324 (479)
T ss_dssp             CEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC--CBCTTSCBCCCTTCBC-SSTTEEECGGGT
T ss_pred             EEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc--eECCCCCEeECCCCcc-CCCCEEEEEecC
Confidence            99999865444  67888888 78999999999999998855 455555  6778899999999998 899999999998


Q ss_pred             CCCCCC
Q 023975          261 DIRVSA  266 (274)
Q Consensus       261 ~~~~~~  266 (274)
                      +.+...
T Consensus       325 ~~~~~~  330 (479)
T 2hqm_A          325 GKVELT  330 (479)
T ss_dssp             TSSCCH
T ss_pred             CCcccH
Confidence            765543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.5e-34  Score=248.63  Aligned_cols=249  Identities=20%  Similarity=0.200  Sum_probs=185.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCceeecccee------------------eecCCc---------
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLR------------------AMVEPS---------   61 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~---g~~v~vie~~~~~g~~~~~~~------------------~~~~~~---------   61 (274)
                      ++||+|||||++|+++|+.|+ .   |++|+|||+++ +|+.+....                  ......         
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   80 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK   80 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence            489999999999999999996 5   99999999988 655432110                  000000         


Q ss_pred             cccceeee------------ccccc--cccEEEEEeeEEEec------C--eEEeCCCe--EEecCEEEEccCCCCCCCh
Q 023975           62 FGKRSVIN------------HTDYL--VNGRIVASPAINITE------N--EVLTAEGR--RVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        62 ~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~------~--~v~~~~~~--~~~~~~li~a~G~~~~~~~  117 (274)
                      ........            ..+++  .+++++...+..++.      +  .+..+++.  .+.||++++|||+.|..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p~  160 (499)
T 1xdi_A           81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP  160 (499)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence            00000000            01111  246666666555554      3  34455665  7999999999999876654


Q ss_pred             hHH-------------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCc
Q 023975          118 TRT-------------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  178 (274)
Q Consensus       118 ~~~-------------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  178 (274)
                      ...                   +++..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||
T Consensus       161 i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV  238 (499)
T 1xdi_A          161 SAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYT--ELGVPVTVVASQDHVLPYEDADAALVLEESFAERGV  238 (499)
T ss_dssp             GGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHH--HTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence            221                   11222345889999999988  568899999999999888899999999999999999


Q ss_pred             EEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchh--hcccccccccCCCCcEEeCCCccccCCCCeEEe
Q 023975          179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI  256 (274)
Q Consensus       179 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~  256 (274)
                      +++++++|++++.+++.+.+.+.+|+++++|.||+|+|..|+.++  ++..++  .++++|+|.||++++| +.|+|||+
T Consensus       239 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~  315 (499)
T 1xdi_A          239 RLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGI--QLGRGNYLTVDRVSRT-LATGIYAA  315 (499)
T ss_dssp             EEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTC--CCBTTTBCCCCSSSBC-SSTTEEEC
T ss_pred             EEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCc--eECCCCCEEECCCccc-CCCCEEEE
Confidence            999999999998776667788888889999999999999999888  444444  6677899999999999 89999999


Q ss_pred             ccccCCCCCCC
Q 023975          257 GDITDIRVSAS  267 (274)
Q Consensus       257 Gd~~~~~~~~~  267 (274)
                      |||++.+...+
T Consensus       316 GD~~~~~~l~~  326 (499)
T 1xdi_A          316 GDCTGLLPLAS  326 (499)
T ss_dssp             SGGGTSCSCHH
T ss_pred             eccCCCcccHH
Confidence            99998765443

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=6.1e-34  Score=243.12  Aligned_cols=249  Identities=22%  Similarity=0.270  Sum_probs=182.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee---------------------ee--cC---Ccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR---------------------AM--VE---PSFGK   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~---------------------~~--~~---~~~~~   64 (274)
                      .++||+|||||++|+++|+.|+ .|++|+|||++ .+|+.|....                     ..  +.   .....
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR   81 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence            3589999999999999999997 49999999998 5555432110                     00  00   00000


Q ss_pred             ceee-------------eccccc---cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChhH-----
Q 023975           65 RSVI-------------NHTDYL---VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTR-----  119 (274)
Q Consensus        65 ~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~~-----  119 (274)
                      ..+.             .+.+++   .+++++...+..++..  .+.+.+|  ..+.||++|+|||+.|..|+++     
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~  161 (467)
T 1zk7_A           82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKES  161 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTTTS
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCCcC
Confidence            0000             011111   1567777666666655  4555677  6899999999999876554321     


Q ss_pred             ----HHHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975          120 ----TERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       120 ----~~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                          ...+.          .+++|.+++|+|..+.  ..+.+++++.+.+.+++ .++.+.+.+.+.+++.|++++++++
T Consensus       162 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~  238 (467)
T 1zk7_A          162 PYWTSTEALASDTIPERLAVIGSSVVALELAQAFA--RLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQ  238 (467)
T ss_dssp             CCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCC
T ss_pred             ceecHHHHhcccccCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCE
Confidence                12222          2345899999999998  56889999999999888 8889999999999999999999999


Q ss_pred             eeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          186 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       186 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |++++.+++...+.++ ++++++|.||+|+|..|+.+++.....++.++++|++.||++++| +.|+||++|||++.|..
T Consensus       239 v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t-~~~~iya~GD~~~~~~~  316 (467)
T 1zk7_A          239 ASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTDQPQF  316 (467)
T ss_dssp             EEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECSTTBSSCCC
T ss_pred             EEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCccc-CCCCEEEEeccCCCccc
Confidence            9999876655566665 458999999999999999876432233345677899999999998 89999999999987754


Q ss_pred             C
Q 023975          266 A  266 (274)
Q Consensus       266 ~  266 (274)
                      .
T Consensus       317 ~  317 (467)
T 1zk7_A          317 V  317 (467)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=9.1e-34  Score=244.79  Aligned_cols=251  Identities=19%  Similarity=0.245  Sum_probs=188.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee-----------------------cCCcccc--
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM-----------------------VEPSFGK--   64 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~-----------------------~~~~~~~--   64 (274)
                      ..++||+|||||++|+++|++|++ |++|+|||+++.+|+.+......                       .......  
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVV  120 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhh
Confidence            345899999999999999999974 99999999998777554211000                       0000000  


Q ss_pred             --ceeee-----cc---ccc-------cccEEE-EEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCChhH-------
Q 023975           65 --RSVIN-----HT---DYL-------VNGRIV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------  119 (274)
Q Consensus        65 --~~~~~-----~~---~~~-------~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~-------  119 (274)
                        .....     ..   .++       .+++++ ...+..++.+.+.+. +..+.||++|+|||+.|..|+++       
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~-g~~~~~d~lViATGs~p~~p~i~G~~~~~v  199 (523)
T 1mo9_A          121 GIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA-GKVFKAKNLILAVGAGPGTLDVPGVNAKGV  199 (523)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET-TEEEEBSCEEECCCEECCCCCSTTTTSBTE
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC-CEEEEeCEEEECCCCCCCCCCCCCcccCcE
Confidence              00000     01   111       245555 555555666667665 77899999999999886655421       


Q ss_pred             --HHHHH-H-----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975          120 --TERLN-Q-----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       120 --~~~~~-~-----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                        ...+. .           +++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||+++++++
T Consensus       200 ~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~  277 (523)
T 1mo9_A          200 FDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSN  277 (523)
T ss_dssp             EEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCE
T ss_pred             eeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCE
Confidence              12222 1           234889999999998  5688999999999988888899999999999999999999999


Q ss_pred             eeeeccCCCc----eeEECCCCc-EEeecEEEEcccCCCCch-hhcccccccccCCCCcEEeCCCccccCCCCeEEeccc
Q 023975          186 VNLDSVSEGS----DTYLTSTGD-TINADCHFLCTGKPVGSD-WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  259 (274)
Q Consensus       186 v~~i~~~~~~----~~v~~~~g~-~~~~d~vv~a~G~~~~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~  259 (274)
                      |++++.+++.    +.+.+++|+ +++||.||+|+|..|+.+ ++...++  .++++|+|.||++++| +.|+|||+|||
T Consensus       278 V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~  354 (523)
T 1mo9_A          278 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGL--DLGPKGEVLVNEYLQT-SVPNVYAVGDL  354 (523)
T ss_dssp             EEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTC--CBCTTSCBCCCTTSBC-SSTTEEECGGG
T ss_pred             EEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCC--ccCCCCCEEECCCCcc-CCCCEEEEeec
Confidence            9999875554    667888887 899999999999999988 6776665  5677899999999999 89999999999


Q ss_pred             cCCCCCCC
Q 023975          260 TDIRVSAS  267 (274)
Q Consensus       260 ~~~~~~~~  267 (274)
                      ++.+...+
T Consensus       355 ~~~~~~~~  362 (523)
T 1mo9_A          355 IGGPMEMF  362 (523)
T ss_dssp             GCSSCSHH
T ss_pred             CCCcccHH
Confidence            98765443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=7.2e-35  Score=250.23  Aligned_cols=253  Identities=20%  Similarity=0.244  Sum_probs=184.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-------------------cCCccc-cceeeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-------------------VEPSFG-KRSVINH   70 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-------------------~~~~~~-~~~~~~~   70 (274)
                      +++||+|||||++|+++|+.|+ .|++|+||||.+.+|+.|......                   ...... ......+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  103 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL  103 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence            3589999999999999999997 599999999988888654321100                   000000 0000000


Q ss_pred             c------------------cc--ccccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCC-CChhH------
Q 023975           71 T------------------DY--LVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDP-VPKTR------  119 (274)
Q Consensus        71 ~------------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~-~~~~~------  119 (274)
                      .                  ..  ..+++++......++..  .+...+|  ..+.||++|+|||+.|. +|+..      
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~~~~~~  183 (491)
T 3urh_A          104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEK  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCcccccCCe
Confidence            0                  00  12456666666666555  4445555  57999999999998743 33321      


Q ss_pred             ----HHH----------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975          120 ----TER----------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       120 ----~~~----------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                          ...          +..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||+++.+++
T Consensus       184 ~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~  261 (491)
T 3urh_A          184 TIVSSTGALALEKVPASMIVVGGGVIGLELGSVWA--RLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAK  261 (491)
T ss_dssp             SEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             eEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCe
Confidence                111          122455899999999998  4588999999999999988999999999999999999999999


Q ss_pred             eeeeccCCCceeEECCC---C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          186 VNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       186 v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      +.+++.+++...+.+.+   |  +++++|.||+|+|+.|+.+++.....++.++++|++.||++++| +.|+|||+|||+
T Consensus       262 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~  340 (491)
T 3urh_A          262 VTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQT-SIAGVYAIGDVV  340 (491)
T ss_dssp             EEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBC-SSTTEEECGGGS
T ss_pred             EEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCC-CCCCEEEEEecC
Confidence            99998777766666542   4  58999999999999999887533333446788999999999999 899999999999


Q ss_pred             CCCCCCC
Q 023975          261 DIRVSAS  267 (274)
Q Consensus       261 ~~~~~~~  267 (274)
                      +.|...+
T Consensus       341 ~~~~~~~  347 (491)
T 3urh_A          341 RGPMLAH  347 (491)
T ss_dssp             SSCCCHH
T ss_pred             CCccchh
Confidence            7765443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=5.7e-33  Score=232.91  Aligned_cols=245  Identities=21%  Similarity=0.283  Sum_probs=184.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCceeecccee-eecCCcc-ccceeeeccccc--cccEEEEEeeEE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLR-AMVEPSF-GKRSVINHTDYL--VNGRIVASPAIN   86 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~   86 (274)
                      +||+|||||++|+++|+.|+ .|+  +|+|||+++...+....+. .++.... .........+++  .++++....+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~   81 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVS   81 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEE
Confidence            68999999999999999997 477  8999999987654432222 1221111 111111122222  245555555555


Q ss_pred             Eec--CeEEeCCCeEEecCEEEEccCCCCCCChh---H------------HHHH----------HHccCCchhhhHHHHh
Q 023975           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKT---R------------TERL----------NQYQAGPTGVELAGEI  139 (274)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~---~------------~~~~----------~~~~~g~~~~e~a~~l  139 (274)
                      ++.  +.+.+.++..+.||++++|||..|..|+.   +            ...+          ..+++|.+++|+|..+
T Consensus        82 id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l  161 (404)
T 3fg2_P           82 IDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATA  161 (404)
T ss_dssp             EETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            553  47888888899999999999987554331   1            1111          1134488999999999


Q ss_pred             hhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccC
Q 023975          140 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .  ..+.+++++.+.+.+++ ..++.+.+.+.+.+++.||++++++.|++++.+++.+ .+.+++|++++||.||+|+|+
T Consensus       162 ~--~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          162 R--AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             H--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             H--hCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence            8  56889999999988876 4678899999999999999999999999998765544 588899999999999999999


Q ss_pred             CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          218 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .|+.+++...++.  .+ +| +.||++++| +.|+||++|||+..+.+
T Consensus       240 ~p~~~l~~~~gl~--~~-~G-i~vd~~~~t-~~~~iya~GD~a~~~~~  282 (404)
T 3fg2_P          240 IPNVEIAAAAGLP--TA-AG-IIVDQQLLT-SDPHISAIGDCALFESV  282 (404)
T ss_dssp             EECCHHHHHTTCC--BS-SS-EEECTTSBC-SSTTEEECGGGEEEEET
T ss_pred             ccCHHHHHhCCCC--CC-CC-EEECCCccc-CCCCEEEeecceeecCc
Confidence            9999988877763  33 44 999999998 89999999999987764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=2.6e-34  Score=246.03  Aligned_cols=253  Identities=19%  Similarity=0.212  Sum_probs=185.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC------ceeeccceee-------------------ecCCccc-c
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY------FEITWASLRA-------------------MVEPSFG-K   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~------~g~~~~~~~~-------------------~~~~~~~-~   64 (274)
                      +++||+|||||++|+++|+.|++ |++|+|+||++.      +|+.|.....                   +....+. .
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            45899999999999999999985 999999999873      3433211100                   0000000 0


Q ss_pred             ceeeecc------------------cc--ccccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChh--
Q 023975           65 RSVINHT------------------DY--LVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKT--  118 (274)
Q Consensus        65 ~~~~~~~------------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~--  118 (274)
                      .....+.                  .+  ..+++++......++.+  .+...++  ..+.||++|+|||+.|..|+.  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~  161 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP  161 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence            0000000                  00  12466666666666555  4555566  578999999999988654321  


Q ss_pred             -------HHHH----------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975          119 -------RTER----------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  181 (274)
Q Consensus       119 -------~~~~----------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  181 (274)
                             ....          +..+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||+++
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~  239 (476)
T 3lad_A          162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWA--RLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKIL  239 (476)
T ss_dssp             CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEE
T ss_pred             CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence                   1111          222445899999999998  568999999999999998899999999999999999999


Q ss_pred             cCceeeeeccCCCceeEECCCC---cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEecc
Q 023975          182 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  258 (274)
Q Consensus       182 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd  258 (274)
                      +++.|++++.+++...+.+.++   +++++|.||+|+|+.|+.+++.....++.++++|++.||++++| +.|+||++||
T Consensus       240 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD  318 (476)
T 3lad_A          240 LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCAT-SVPGVYAIGD  318 (476)
T ss_dssp             ETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBC-SSTTEEECGG
T ss_pred             ECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCccc-CCCCEEEEEc
Confidence            9999999988777777776654   67999999999999999886533444457788999999999998 8999999999


Q ss_pred             ccCCCCCCC
Q 023975          259 ITDIRVSAS  267 (274)
Q Consensus       259 ~~~~~~~~~  267 (274)
                      |++.|...+
T Consensus       319 ~~~~~~~~~  327 (476)
T 3lad_A          319 VVRGAMLAH  327 (476)
T ss_dssp             GSSSCCCHH
T ss_pred             cCCCcccHH
Confidence            997766543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1e-33  Score=243.32  Aligned_cols=242  Identities=20%  Similarity=0.252  Sum_probs=171.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee--------------eec------C----Ccccccee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR--------------AMV------E----PSFGKRSV   67 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~--------------~~~------~----~~~~~~~~   67 (274)
                      ++||+|||||++|+++|..|+ .|++|+|+|+++ +|+.|....              ...      .    ........
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   80 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL   80 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence            489999999999999999997 599999999985 554432100              000      0    00000000


Q ss_pred             ee------------ccccc--cccEEEEEeeEEEecCeEEeCC-------------CeEEecCEEEEccCCCCCCChhH-
Q 023975           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAE-------------GRRVVYDYLVIATGHKDPVPKTR-  119 (274)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~~~li~a~G~~~~~~~~~-  119 (274)
                      ..            ....+  .+++++......++.+.+...+             +..+.||++|+|||+.|..|+++ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i~G  160 (500)
T 1onf_A           81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG  160 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCCCC
Confidence            00            00111  2456665554444444444433             56789999999999987665432 


Q ss_pred             ------HHHHH---------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCc
Q 023975          120 ------TERLN---------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE  184 (274)
Q Consensus       120 ------~~~~~---------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~  184 (274)
                            ...+.         .+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||++++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~  238 (500)
T 1onf_A          161 IENTISSDEFFNIKESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFA  238 (500)
T ss_dssp             GGGCEEHHHHTTCCCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSC
T ss_pred             CCcccCHHHHhccCCCCeEEEECChHHHHHHHHHHH--HcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECC
Confidence                  12221         2355899999999998  678999999999999988899999999999999999999999


Q ss_pred             eeeeeccCCC-ceeEECCCCcE-EeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          185 RVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       185 ~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                      .|++++.+++ ...+.+++|++ +++|.||+|+|..|+.+.+  ...++  .+ ++|++.||++++| +.|+|||+|||+
T Consensus       239 ~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~--~~-~~G~i~vd~~~~t-~~~~iya~GD~~  314 (500)
T 1onf_A          239 DVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNV--ET-NNNYIVVDENQRT-SVNNIYAVGDCC  314 (500)
T ss_dssp             CEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTC--CB-SSSCEEECTTCBC-SSSSEEECSTTE
T ss_pred             EEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCc--cc-cCCEEEECCCccc-CCCCEEEEeccc
Confidence            9999986543 46788888987 9999999999999998644  44555  55 6899999999998 899999999999


Q ss_pred             C
Q 023975          261 D  261 (274)
Q Consensus       261 ~  261 (274)
                      .
T Consensus       315 ~  315 (500)
T 1onf_A          315 M  315 (500)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=2.8e-33  Score=239.33  Aligned_cols=248  Identities=25%  Similarity=0.318  Sum_probs=174.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCccc-cc-e------eeeccccc---cccE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG-KR-S------VINHTDYL---VNGR   78 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~-~------~~~~~~~~---~~~~   78 (274)
                      ++||+|||||++|+++|+.|+ +  |++|+|||+++.+++....+...+..... .. .      .....+++   .+++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            369999999999999999996 4  89999999999876443322222221111 01 0      11111111   2344


Q ss_pred             EE-EEeeEEEec--CeEEeCC---Ce--EEecCEEEEccCCCCCCCh---hH------------HHHHH-----------
Q 023975           79 IV-ASPAINITE--NEVLTAE---GR--RVVYDYLVIATGHKDPVPK---TR------------TERLN-----------  124 (274)
Q Consensus        79 ~~-~~~~~~~~~--~~v~~~~---~~--~~~~~~li~a~G~~~~~~~---~~------------~~~~~-----------  124 (274)
                      +. ...+..++.  +.+.+.+   +.  .+.||++++|||..|..|+   ..            ...+.           
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~v  162 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKA  162 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEE
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEE
Confidence            42 234444443  3444433   54  7899999999998755433   11            11222           


Q ss_pred             -HccCCchhhhHHHHhhhhCC-CCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC
Q 023975          125 -QYQAGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  201 (274)
Q Consensus       125 -~~~~g~~~~e~a~~l~~~~~-~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  201 (274)
                       .+++|.+++|+|..+.  .. +.+++++.+.+.+++ ..++.+.+.+.+.+++.||+++++++|++++.+++.+.+.+.
T Consensus       163 vViGgG~~g~e~A~~l~--~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~  240 (472)
T 3iwa_A          163 VIVGGGFIGLEMAVSLA--DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVIT  240 (472)
T ss_dssp             EEECCSHHHHHHHHHHH--HHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEE
T ss_pred             EEECCCHHHHHHHHHHH--HhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEe
Confidence             1344889999999988  45 889999999999888 888999999999999999999999999999876777778888


Q ss_pred             CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          202 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +|+++++|.||+|+|+.|+.+++...++  .++++|++.||++++| +.|+||++|||+..+..
T Consensus       241 ~g~~i~aD~Vv~a~G~~p~~~l~~~~gl--~~~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~  301 (472)
T 3iwa_A          241 DKRTLDADLVILAAGVSPNTQLARDAGL--ELDPRGAIIVDTRMRT-SDPDIFAGGDCVTIPNL  301 (472)
T ss_dssp             SSCEEECSEEEECSCEEECCHHHHHHTC--CBCTTCCEECCTTCBC-SSTTEEECGGGEEEEBT
T ss_pred             CCCEEEcCEEEECCCCCcCHHHHHhCCc--cCCCCCCEEECCCccc-CCCCEEEeccceecccc
Confidence            9999999999999999999888766555  6778899999999999 89999999999965543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=6.7e-34  Score=243.30  Aligned_cols=250  Identities=19%  Similarity=0.189  Sum_probs=184.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee--------------------cCCc-------ccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM--------------------VEPS-------FGK   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~--------------------~~~~-------~~~   64 (274)
                      ++||+|||||++|+++|..|++ |++|+|||+++.+|+.|......                    ....       ...
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   85 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL   85 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence            4899999999999999999974 99999999998777654221000                    0000       000


Q ss_pred             ceeee------------ccccc--cccEEEEEeeEEEecC--eEEeCC-C-eEEecCEEEEccCCCCCCChhH-------
Q 023975           65 RSVIN------------HTDYL--VNGRIVASPAINITEN--EVLTAE-G-RRVVYDYLVIATGHKDPVPKTR-------  119 (274)
Q Consensus        65 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~-~-~~~~~~~li~a~G~~~~~~~~~-------  119 (274)
                      .....            ..+++  .+++++......++.+  .+.+.+ + .++.||++|+|||+.|..|+..       
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~v  165 (474)
T 1zmd_A           86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI  165 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCcE
Confidence            00000            01111  2456666665555555  344555 4 5799999999999886554321       


Q ss_pred             --HHH----------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          120 --TER----------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       120 --~~~----------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                        ...          +..+++|.+++|+|..+.  ..+.+|+++.+.+.+++ .+++.+.+.+.+.+++.||+++++++|
T Consensus       166 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v  243 (474)
T 1zmd_A          166 VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQ--RLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKV  243 (474)
T ss_dssp             ECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EcHHHHhhccccCceEEEECCCHHHHHHHHHHH--HcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceE
Confidence              111          122344899999999998  56899999999999888 889999999999999999999999999


Q ss_pred             eeeccCCCc-eeEE-----CCCCcEEeecEEEEcccCCCCchh--hcccccccccCCCCcEEeCCCccccCCCCeEEecc
Q 023975          187 NLDSVSEGS-DTYL-----TSTGDTINADCHFLCTGKPVGSDW--LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGD  258 (274)
Q Consensus       187 ~~i~~~~~~-~~v~-----~~~g~~~~~d~vv~a~G~~~~~~~--~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd  258 (274)
                      ++++.+++. +.+.     ..+++++++|.||+|+|..|+.++  +...++  .++++|+|.||++++| +.|+|||+||
T Consensus       244 ~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~IyA~GD  320 (474)
T 1zmd_A          244 TGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGI--ELDPRGRIPVNTRFQT-KIPNIYAIGD  320 (474)
T ss_dssp             EEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTC--CCCTTSCCCCCTTCBC-SSTTEEECGG
T ss_pred             EEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCC--ccCCCCCEEECcCCcc-CCCCEEEeee
Confidence            999876655 6665     356678999999999999999887  444444  5677899999999998 8999999999


Q ss_pred             ccCCCCCCC
Q 023975          259 ITDIRVSAS  267 (274)
Q Consensus       259 ~~~~~~~~~  267 (274)
                      |++.+...+
T Consensus       321 ~~~~~~~~~  329 (474)
T 1zmd_A          321 VVAGPMLAH  329 (474)
T ss_dssp             GSSSCCCHH
T ss_pred             cCCCCccHH
Confidence            998765443

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=7.6e-34  Score=243.26  Aligned_cols=250  Identities=14%  Similarity=0.165  Sum_probs=183.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee------------------ec--C-----Cccccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------MV--E-----PSFGKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~------------------~~--~-----~~~~~~~   66 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|+|+.+.+|+.+.....                  ..  .     .......
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~   85 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM   85 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence            589999999999999999997 59999999998777644311100                  00  0     0000000


Q ss_pred             eee------------ccccc--cccEEEEEeeEEEecCeEEe--CCC------------eEEecCEEEEccCCCCCCCh-
Q 023975           67 VIN------------HTDYL--VNGRIVASPAINITENEVLT--AEG------------RRVVYDYLVIATGHKDPVPK-  117 (274)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~--~~~------------~~~~~~~li~a~G~~~~~~~-  117 (274)
                      ...            ...++  .+++++.......+.+.+..  .++            .+++||++|+|||+.|..|+ 
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~~~~  165 (482)
T 1ojt_A           86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPF  165 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCCCCC
Confidence            000            00111  24666666655555553333  344            57899999999999866543 


Q ss_pred             hH-------HHHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEE
Q 023975          118 TR-------TERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  180 (274)
Q Consensus       118 ~~-------~~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  180 (274)
                      ..       .....          .+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||++
T Consensus       166 i~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i  243 (482)
T 1ojt_A          166 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNI  243 (482)
T ss_dssp             CCCCTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEE
T ss_pred             CCccCcEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCCEE
Confidence            11       12221          1344899999999998  45889999999999999889999999999999999999


Q ss_pred             EcCceeeeeccCCCceeEECCC----CcEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeE
Q 023975          181 KLGERVNLDSVSEGSDTYLTST----GDTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIF  254 (274)
Q Consensus       181 ~~~~~v~~i~~~~~~~~v~~~~----g~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~  254 (274)
                      ++++.|.+++.+++...+++.+    |+++++|.||+|+|..|+.+++  ...++  .++++|+|.||++++| +.|+||
T Consensus       244 ~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~Iy  320 (482)
T 1ojt_A          244 MVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGV--AVTDRGFIEVDKQMRT-NVPHIY  320 (482)
T ss_dssp             ECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTC--CCCTTSCCCCCTTSBC-SSTTEE
T ss_pred             EECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCc--eeCCCCCEeeCCCccc-CCCCEE
Confidence            9999999998766666777766    7789999999999999999875  44444  6677899999999998 899999


Q ss_pred             EeccccCCCCCCC
Q 023975          255 AIGDITDIRVSAS  267 (274)
Q Consensus       255 ~~Gd~~~~~~~~~  267 (274)
                      |+|||++.+...+
T Consensus       321 A~GD~~~~~~l~~  333 (482)
T 1ojt_A          321 AIGDIVGQPMLAH  333 (482)
T ss_dssp             ECGGGTCSSCCHH
T ss_pred             EEEcccCCCccHH
Confidence            9999998765443

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2.2e-33  Score=239.20  Aligned_cols=248  Identities=18%  Similarity=0.212  Sum_probs=184.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee-----e-----------------cC--Ccccccee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-----M-----------------VE--PSFGKRSV   67 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~-----~-----------------~~--~~~~~~~~   67 (274)
                      ++||+|||||++|+++|..|+ .|++|+|+|+++ +|+.|.....     +                 +.  ........
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   84 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL   84 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence            489999999999999999997 499999999987 5544311000     0                 00  00000000


Q ss_pred             ee------------ccccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCCh-hH-------HHHH--
Q 023975           68 IN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TR-------TERL--  123 (274)
Q Consensus        68 ~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~-~~-------~~~~--  123 (274)
                      ..            ...++  .+++++......++.+.+.+. +.++.||++|+|||+.|..|+ ++       ...+  
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~~~v~~~~~~~~  163 (464)
T 2eq6_A           85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG-GERYGAKSLILATGSEPLELKGFPFGEDVWDSTRALK  163 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TEEEEEEEEEECCCEEECCBTTBCCSSSEECHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCCCcEEcHHHHHh
Confidence            00            01111  256777666666666677776 678999999999999876553 21       1111  


Q ss_pred             ---------HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC
Q 023975          124 ---------NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG  194 (274)
Q Consensus       124 ---------~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~  194 (274)
                               ..+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||+++.+++|++++.+++
T Consensus       164 l~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~  241 (464)
T 2eq6_A          164 VEEGLPKRLLVIGGGAVGLELGQVYR--RLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKD  241 (464)
T ss_dssp             GGGCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhhcCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCC
Confidence                     12344899999999998  5689999999999988888899999999999999999999999999987666


Q ss_pred             ceeEECC-C--Cc--EEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          195 SDTYLTS-T--GD--TINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       195 ~~~v~~~-~--g~--~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      .+.+.+. +  |+  ++++|.||+|+|..|+.+++  ...++  .++++|++.||++++| +.|+|||+|||++.+...+
T Consensus       242 ~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~l~~  318 (464)
T 2eq6_A          242 GLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGV--KVDERGFIRVNARMET-SVPGVYAIGDAARPPLLAH  318 (464)
T ss_dssp             EEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTC--CBCTTSCBCCCTTCBC-SSTTEEECGGGTCSSCCHH
T ss_pred             EEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCc--eecCCCCEEECCCccc-CCCCEEEEeccCCCcccHH
Confidence            6667765 6  76  89999999999999998864  33444  5677899999999998 8999999999998765443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.6e-34  Score=244.87  Aligned_cols=253  Identities=20%  Similarity=0.200  Sum_probs=184.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeec---------------------C-----Ccccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV---------------------E-----PSFGK   64 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~---------------------~-----~~~~~   64 (274)
                      .++||+|||||++|+++|..|++ |++|+|+|+.+.+|+.|.......                     .     .....
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL   84 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            45899999999999999999975 999999999987776542210000                     0     00000


Q ss_pred             ceeeec------------cccc--cccEEEEEeeEEEecCe--EEeCCC--eEEecCEEEEccCCCCCCChhH-------
Q 023975           65 RSVINH------------TDYL--VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTR-------  119 (274)
Q Consensus        65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~~li~a~G~~~~~~~~~-------  119 (274)
                      .....+            ..++  .+++++......++.+.  +.+.+|  ..+.||++|+|||..|..|+..       
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~v  164 (470)
T 1dxl_A           85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI  164 (470)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCcccE
Confidence            000000            0111  14566665555555553  334456  6899999999999986655421       


Q ss_pred             --HHHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceee
Q 023975          120 --TERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVN  187 (274)
Q Consensus       120 --~~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~  187 (274)
                        ...+.          .+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.||++++++.|.
T Consensus       165 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~  242 (470)
T 1dxl_A          165 VSSTGALALSEIPKKLVVIGAGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVV  242 (470)
T ss_dssp             ECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred             EeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEE
Confidence              11221          2345899999999998  458899999999998888889999999999999999999999999


Q ss_pred             eeccCCCceeEECC---CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          188 LDSVSEGSDTYLTS---TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       188 ~i~~~~~~~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      +++.+++.+.+.+.   +|  +++++|.||+|+|..|+.+++....+++.++++|++.||++++| +.|+|||+|||++.
T Consensus       243 ~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~  321 (470)
T 1dxl_A          243 GVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFST-NVSGVYAIGDVIPG  321 (470)
T ss_dssp             EEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBC-SSTTEEECSTTSSS
T ss_pred             EEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCcc-CCCCEEEEeccCCC
Confidence            99877666666654   44  68999999999999999888432233346677899999999998 89999999999987


Q ss_pred             CCCCC
Q 023975          263 RVSAS  267 (274)
Q Consensus       263 ~~~~~  267 (274)
                      +...+
T Consensus       322 ~~~~~  326 (470)
T 1dxl_A          322 PMLAH  326 (470)
T ss_dssp             CCCHH
T ss_pred             CccHH
Confidence            65443

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=1.4e-33  Score=241.63  Aligned_cols=251  Identities=20%  Similarity=0.259  Sum_probs=182.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee--------------ec----CCcc-------ccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------MV----EPSF-------GKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~--------------~~----~~~~-------~~~~   66 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|+|++ .+|+.|.....              ..    ...+       ....
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   98 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRV   98 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence            589999999999999999998 49999999987 45544321100              00    0000       0000


Q ss_pred             eeec------------ccc--ccccEEEEEeeEEEecC--eEEeCCCeEEecCEEEEccCCCCCCC---hhH-------H
Q 023975           67 VINH------------TDY--LVNGRIVASPAINITEN--EVLTAEGRRVVYDYLVIATGHKDPVP---KTR-------T  120 (274)
Q Consensus        67 ~~~~------------~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~li~a~G~~~~~~---~~~-------~  120 (274)
                      ...+            ...  ..+++++.......+..  .+. .++.++.||++|+|||+.|..|   +++       .
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~~~~~~  177 (478)
T 3dk9_A           99 IKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGASLGITS  177 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGGGSBCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCceeEch
Confidence            0000            000  12456666665555433  444 4677899999999999886655   322       2


Q ss_pred             HHHHH----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ERLNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ~~~~~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ..+..          +++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||+++.++.+++++
T Consensus       178 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~  255 (478)
T 3dk9_A          178 DGFFQLEELPGRSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVK  255 (478)
T ss_dssp             HHHTTCCSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred             HHhhchhhcCccEEEECCCHHHHHHHHHHH--HcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence            22222          345899999999998  568999999999998898999999999999999999999999999998


Q ss_pred             cCCCc--eeEECCC-------CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC
Q 023975          191 VSEGS--DTYLTST-------GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       191 ~~~~~--~~v~~~~-------g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~  261 (274)
                      .+++.  +.+.+.+       |+++++|.||+|+|+.|+.+.+....+++.++++|++.||++++| +.|+|||+|||++
T Consensus       256 ~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~  334 (478)
T 3dk9_A          256 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCG  334 (478)
T ss_dssp             ECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC-SSTTEEECGGGGC
T ss_pred             EcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc-CCCCEEEEEecCC
Confidence            66554  5566654       257999999999999999885433334446788999999999998 8999999999997


Q ss_pred             CCCCCCC
Q 023975          262 IRVSASM  268 (274)
Q Consensus       262 ~~~~~~~  268 (274)
                      .|...+.
T Consensus       335 ~~~~~~~  341 (478)
T 3dk9_A          335 KALLTPV  341 (478)
T ss_dssp             SSCCHHH
T ss_pred             CCccHhH
Confidence            7665443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=9.9e-33  Score=234.70  Aligned_cols=244  Identities=21%  Similarity=0.324  Sum_probs=178.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCcc---cc-ceeeeccccc--cccEEEEE-e
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSF---GK-RSVINHTDYL--VNGRIVAS-P   83 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~~~~~--~~~~~~~~-~   83 (274)
                      +||+|||||++|+++|..|+ .  |++|+|+|+++.+++....+........   .. .......+++  .++++... .
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   80 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ   80 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCE
Confidence            58999999999999999997 3  9999999999876543332211111111   01 1111111111  14555333 3


Q ss_pred             eEEEe--cCeEEeCC-----CeEEecCEEEEccCCCCCCChhH---------------HHHH----------HHccCCch
Q 023975           84 AINIT--ENEVLTAE-----GRRVVYDYLVIATGHKDPVPKTR---------------TERL----------NQYQAGPT  131 (274)
Q Consensus        84 ~~~~~--~~~v~~~~-----~~~~~~~~li~a~G~~~~~~~~~---------------~~~~----------~~~~~g~~  131 (274)
                      +..++  .+.+.+.+     +..+.||++++|||+.|..|+++               ...+          ..+++|.+
T Consensus        81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~  160 (452)
T 2cdu_A           81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI  160 (452)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHH
T ss_pred             EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHH
Confidence            44444  44555532     46799999999999876544321               1111          11345899


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeec
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINAD  209 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d  209 (274)
                      ++|+|..+.  ..+.+++++.+.+.+++ .+++.+.+.+.+.+++.||+++++++|++++.+++.+. +.+ +|+++++|
T Consensus       161 g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D  237 (452)
T 2cdu_A          161 GAELAEAYS--NQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSD  237 (452)
T ss_dssp             HHHHHHHHH--TTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEES
T ss_pred             HHHHHHHHH--hcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECC
Confidence            999999998  66899999999999888 68889999999999999999999999999986444443 455 77899999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .||+|+|..|+.+++... +  .++++|++.||++++| +.|+|||+|||++.+.
T Consensus       238 ~vv~a~G~~p~~~ll~~~-l--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~~  288 (452)
T 2cdu_A          238 IAILCIGFRPNTELLKGK-V--AMLDNGAIITDEYMHS-SNRDIFAAGDSAAVHY  288 (452)
T ss_dssp             EEEECCCEEECCGGGTTT-S--CBCTTSCBCCCTTSBC-SSTTEEECSTTBCEEE
T ss_pred             EEEECcCCCCCHHHHHHh-h--hcCCCCCEEECCCcCc-CCCCEEEcceEEEecc
Confidence            999999999999887654 4  5678899999999999 8999999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=6.4e-33  Score=242.29  Aligned_cols=247  Identities=19%  Similarity=0.319  Sum_probs=183.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCccc--cceeeeccccc---cccEEE-EEee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL---VNGRIV-ASPA   84 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~~   84 (274)
                      +||+|||||++|+++|+.|+ .  +++|+|||+++.+++....+.........  ........+.+   .++++. ...+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            69999999999999999997 3  89999999999877544333322222111  11111111111   134442 3344


Q ss_pred             EEEec--CeEEeCC---C--eEEecCEEEEccCCCCCCCh---hH------------HHHH------------HHccCCc
Q 023975           85 INITE--NEVLTAE---G--RRVVYDYLVIATGHKDPVPK---TR------------TERL------------NQYQAGP  130 (274)
Q Consensus        85 ~~~~~--~~v~~~~---~--~~~~~~~li~a~G~~~~~~~---~~------------~~~~------------~~~~~g~  130 (274)
                      ..++.  +.+.+.+   +  .++.||++|+|||+.|..|+   .+            ...+            ..+++|.
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~  161 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF  161 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCH
Confidence            44543  3444432   4  37899999999998755433   21            1111            1234599


Q ss_pred             hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeecc-------------------
Q 023975          131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV-------------------  191 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-------------------  191 (274)
                      +++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||++++++.+.+++.                   
T Consensus       162 ~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~  239 (565)
T 3ntd_A          162 IGLEMMESLH--HLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH  239 (565)
T ss_dssp             HHHHHHHHHH--HTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCC
T ss_pred             HHHHHHHHHH--hcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccccccccc
Confidence            9999999998  5689999999999988888899999999999999999999999999976                   


Q ss_pred             CCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          192 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       192 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .++.+.+.+.+|++++||.||+|+|+.|+.+++...++  .++++|++.||++++| +.|+|||+|||+..+..
T Consensus       240 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  310 (565)
T 3ntd_A          240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL--AIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDF  310 (565)
T ss_dssp             TTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTC--CBCTTSSBCCCTTCBC-SSTTEEECGGGBCEEBT
T ss_pred             CCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCc--ccCCCCCEEECCCccc-CCCCEEEeeeeEeeccc
Confidence            34566777888999999999999999999888766555  6778899999999999 89999999999965543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.1e-34  Score=242.80  Aligned_cols=250  Identities=21%  Similarity=0.229  Sum_probs=181.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee------------------ec--C-----Cccccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA------------------MV--E-----PSFGKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~------------------~~--~-----~~~~~~~   66 (274)
                      ++||+|||||++|+++|..|+ .|++|+|+|+. .+|+.|.....                  ..  .     .......
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   81 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK   81 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence            479999999999999999997 49999999998 55544311000                  00  0     0000000


Q ss_pred             eeec------------cccc--cccEEEEEeeEEEecC--eEEeCCC-eEEecCEEEEccCCCCCCChhH--------HH
Q 023975           67 VINH------------TDYL--VNGRIVASPAINITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPKTR--------TE  121 (274)
Q Consensus        67 ~~~~------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~-~~~~~~~li~a~G~~~~~~~~~--------~~  121 (274)
                      ....            .+++  .+++++......++.+  .+.+.++ .++.||++|+|||+.|..|+..        ..
T Consensus        82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~v~~~~  161 (455)
T 1ebd_A           82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRILDST  161 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSSEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccceEecHH
Confidence            0000            0111  2466666665555555  4455566 6799999999999986654321        11


Q ss_pred             HHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          122 RLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       122 ~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      ...          .+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||++++++.|++++.
T Consensus       162 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  239 (455)
T 1ebd_A          162 GALNLGEVPKSLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEE  239 (455)
T ss_dssp             HHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEE
T ss_pred             HHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence            221          1344899999999998  5689999999999988888889999999999999999999999999987


Q ss_pred             CCCceeEECC---CCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          192 SEGSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       192 ~~~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +++.+.+.+.   +++++++|.||+|+|..|+.+++....+++.++++|++.||++++| +.|+|||+|||++.+...
T Consensus       240 ~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  316 (455)
T 1ebd_A          240 REDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPNIFAIGDIVPGPALA  316 (455)
T ss_dssp             ETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBC-SSTTEEECGGGSSSCCCH
T ss_pred             eCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCccc-CCCCEEEEeccCCCcccH
Confidence            6655666654   4568999999999999999887432233336677899999999998 899999999999876544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.6e-32  Score=233.20  Aligned_cols=246  Identities=22%  Similarity=0.318  Sum_probs=176.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCcccc-ceeeeccccc---cccEEEEE-ee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYL---VNGRIVAS-PA   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~-~~   84 (274)
                      ++||+|||||++|+++|+.|++   +++|+|||+++.+++.+..+.......... .......+.+   .++++... .+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            4799999999999999999973   889999999998765443333222211111 1111111211   24555544 44


Q ss_pred             EEEecC--eEEeCCC-eEEecCEEEEccCCCCCCCh---hH------------HH------------HHHHccCCchhhh
Q 023975           85 INITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPK---TR------------TE------------RLNQYQAGPTGVE  134 (274)
Q Consensus        85 ~~~~~~--~v~~~~~-~~~~~~~li~a~G~~~~~~~---~~------------~~------------~~~~~~~g~~~~e  134 (274)
                      ..++..  .+.++++ .++.||++++|||+.|..|+   .+            ..            ++..+++|.+++|
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E  162 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIE  162 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHH
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHH
Confidence            455433  5666666 48999999999998755443   11            11            1122345899999


Q ss_pred             HHHHhhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEE
Q 023975          135 LAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  213 (274)
Q Consensus       135 ~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  213 (274)
                      +|..+.  ..+.+++++.+.+.+++. +++.+.+.+.+.+++. ++++.++.+.+++.++ .+...+.+++++++|.||+
T Consensus       163 ~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~  238 (449)
T 3kd9_A          163 MAEAFA--AQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVIL  238 (449)
T ss_dssp             HHHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEE
T ss_pred             HHHHHH--hCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEE
Confidence            999998  568999999999998886 8899999999999989 9999999999998655 4433455778899999999


Q ss_pred             cccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          214 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       214 a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |+|..|+.+++...++  .++++|++.||++++| +.|+||++|||+..+..
T Consensus       239 a~G~~p~~~l~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~  287 (449)
T 3kd9_A          239 ATGIKPNIELAKQLGV--RIGETGAIWTNEKMQT-SVENVYAAGDVAETRHV  287 (449)
T ss_dssp             CSCEEECCHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBCEEBT
T ss_pred             eeCCccCHHHHHhCCc--cCCCCCCEEECCCCcc-CCCCEEEeeeeeeeccc
Confidence            9999999888876665  5678899999999999 89999999999975543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.1e-33  Score=227.84  Aligned_cols=239  Identities=18%  Similarity=0.212  Sum_probs=170.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-ccccee----eeccccccccEEEEEeeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKRSV----INHTDYLVNGRIVASPAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~   86 (274)
                      ++||+|||||++|+++|+.|+ +|++|+|+|+++..+..+.....+.... .....+    ......+.++.++...+..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   81 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTD   81 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEE
Confidence            489999999999999999997 5999999999875543322221111111 000000    0111112245665555555


Q ss_pred             EecC----eEEeCCCeEEecCEEEEccCCCCCCC---hhHH-------------------HHHHHccCCchhhhHHHHhh
Q 023975           87 ITEN----EVLTAEGRRVVYDYLVIATGHKDPVP---KTRT-------------------ERLNQYQAGPTGVELAGEIA  140 (274)
Q Consensus        87 ~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~---~~~~-------------------~~~~~~~~g~~~~e~a~~l~  140 (274)
                      ++..    .+.++++..+.||++|+|+|..|..|   +...                   +.+..+++|.+++|+|..+.
T Consensus        82 i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~  161 (297)
T 3fbs_A           82 AKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLP  161 (297)
T ss_dssp             EEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGG
T ss_pred             EEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhh
Confidence            5432    67778888899999999999985443   3211                   11112345899999999998


Q ss_pred             hhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          141 VDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .  .+ +++++.+.+.       .+...+.+.+++.||+++. +++.++..++   .+.+.+|+++++|.||+|+|+.|+
T Consensus       162 ~--~g-~v~~v~~~~~-------~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          162 D--WG-ETTFFTNGIV-------EPDADQHALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             G--TS-EEEEECTTTC-------CCCHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECC
T ss_pred             h--cC-cEEEEECCCC-------CCCHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccC
Confidence            4  36 9999987764       2445677888999999995 8899987543   788889999999999999999999


Q ss_pred             chhhcccccccccCCCC-cEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          221 SDWLKDTILKDSLDTHG-MLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      .+++...++.....++| ++.+|++++| +.|+||++|||++.|...
T Consensus       228 ~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~~~~~~~~  273 (297)
T 3fbs_A          228 VDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARPAGSV  273 (297)
T ss_dssp             CSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGGGCTTCCH
T ss_pred             chhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeecCCchHHH
Confidence            88887766643322467 8999999998 899999999999875543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-33  Score=241.27  Aligned_cols=246  Identities=20%  Similarity=0.210  Sum_probs=182.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec--------------------CCcccccee----
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV--------------------EPSFGKRSV----   67 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~--------------------~~~~~~~~~----   67 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|+||.+.+|+.|.......                    ...+.....    
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK   83 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence            489999999999999999997 5999999999888887654211100                    000000000    


Q ss_pred             ---------eecccc--ccccEEEEEeeEEEecC--eEEeCCCeE--EecCEEEEccCCCCCCChhH-------HHHHH-
Q 023975           68 ---------INHTDY--LVNGRIVASPAINITEN--EVLTAEGRR--VVYDYLVIATGHKDPVPKTR-------TERLN-  124 (274)
Q Consensus        68 ---------~~~~~~--~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~li~a~G~~~~~~~~~-------~~~~~-  124 (274)
                               .....+  ..+++++...+..++.+  .+.++++..  +.||++|+|||+.|..|+.+       ...+. 
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t~~~~~~  163 (466)
T 3l8k_A           84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG  163 (466)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBCHHHHHS
T ss_pred             HhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEeHHHHHH
Confidence                     000111  12566666666666655  556667777  99999999999876554321       12222 


Q ss_pred             -------------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC-ChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          125 -------------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-GPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       125 -------------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                                   .+++|.+++|+|..+.  ..+.+++++.+.+.+++.. ++.+.+.+.+.++   |+++.++.|++++
T Consensus       164 ~~~~l~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~  238 (466)
T 3l8k_A          164 YKTSFRKLPQDMVIIGAGYIGLEIASIFR--LMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVK  238 (466)
T ss_dssp             TTCSCCSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEE
T ss_pred             HHHHHhhCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEE
Confidence                         1234889999999998  5689999999999988877 8888888888776   9999999999998


Q ss_pred             cCC-CceeEECC--CCc--EEeecEEEEcccCCCCchh-hcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          191 VSE-GSDTYLTS--TGD--TINADCHFLCTGKPVGSDW-LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       191 ~~~-~~~~v~~~--~g~--~~~~d~vv~a~G~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .++ +.+.+.+.  +|+  ++++|.||+|+|+.|+.++ +...++  .++++| +.||++++| +.|+|||+|||++.|.
T Consensus       239 ~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl--~~~~~G-i~vd~~~~t-~~~~Iya~GD~~~~~~  314 (466)
T 3l8k_A          239 KIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGL--SISKTG-IVVDETMKT-NIPNVFATGDANGLAP  314 (466)
T ss_dssp             EEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTC--CBCSSS-BCCCTTCBC-SSTTEEECGGGTCSCC
T ss_pred             EcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCc--eeCCCC-EeECCCccC-CCCCEEEEEecCCCCc
Confidence            766 66777776  665  8999999999999999883 444444  677888 999999999 8999999999998765


Q ss_pred             CCC
Q 023975          265 SAS  267 (274)
Q Consensus       265 ~~~  267 (274)
                      ...
T Consensus       315 ~~~  317 (466)
T 3l8k_A          315 YYH  317 (466)
T ss_dssp             SHH
T ss_pred             cHh
Confidence            543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=1.1e-31  Score=225.23  Aligned_cols=242  Identities=22%  Similarity=0.278  Sum_probs=180.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CC--cEEEEcCCCCceeecccee-eecCCccccceeeeccccccccEEEEEe-eEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLR-AMVEPSFGKRSVINHTDYLVNGRIVASP-AIN   86 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   86 (274)
                      +++||+|||||++|+++|..|++ |+  +|+|+|+++.+++....+. .++.............. ..+++++... +..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~v~~   84 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR-APEVEWLLGVTAQS   84 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTT-SCSCEEEETCCEEE
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHH-HCCCEEEcCCEEEE
Confidence            45899999999999999999974 76  5999999987654322221 11111111111111000 1246666554 455


Q ss_pred             Eec--CeEEeCCCeEEecCEEEEccCCCCCCChh-H-----------HHH---HH----------HccCCchhhhHHHHh
Q 023975           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKT-R-----------TER---LN----------QYQAGPTGVELAGEI  139 (274)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~-~-----------~~~---~~----------~~~~g~~~~e~a~~l  139 (274)
                      ++.  +.+.++++..+.||++|+|||+.|..|+. +           ...   +.          .+++|.+++|+|..+
T Consensus        85 i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l  164 (408)
T 2gqw_A           85 FDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATA  164 (408)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHH
Confidence            553  47888888889999999999988665443 1           111   21          123488999999999


Q ss_pred             hhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          140 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      .  ..+.+++++.+.+.+++ ..++.+.+.+.+.+++.||+++++++|++++ + +  .+++.+|++++||.||+|+|..
T Consensus       165 ~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~  238 (408)
T 2gqw_A          165 R--TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVL  238 (408)
T ss_dssp             H--HTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEE
T ss_pred             H--hCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCC
Confidence            8  56889999999998887 4788899999999999999999999999998 3 3  6778889999999999999999


Q ss_pred             CCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          219 VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |+.+++...++.  .+ +| +.||++++| +.|+|||+|||+..+.+
T Consensus       239 p~~~l~~~~gl~--~~-~g-i~Vd~~~~t-~~~~IyA~GD~~~~~~~  280 (408)
T 2gqw_A          239 ANDALARAAGLA--CD-DG-IFVDAYGRT-TCPDVYALGDVTRQRNP  280 (408)
T ss_dssp             ECCHHHHHHTCC--BS-SS-EECCTTCBC-SSTTEEECGGGEEEEET
T ss_pred             ccHHHHHhCCCC--CC-CC-EEECCCCcc-CCCCEEEEEEEEEecCc
Confidence            998888776663  33 45 999999998 89999999999987653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=1.8e-32  Score=221.55  Aligned_cols=238  Identities=16%  Similarity=0.184  Sum_probs=161.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCc-cccc----eeeeccccccccEEEEEeeE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS-FGKR----SVINHTDYLVNGRIVASPAI   85 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~   85 (274)
                      ++|||+||||||||++||++|+ .|++|+|||+....|........+.... ....    ........+....+......
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVV   84 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEE
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEE
Confidence            3589999999999999999997 5999999999765442211111111110 0000    00001111223444444444


Q ss_pred             EEec-----CeEEeCCCeEEecCEEEEccCCCCCCChhHHHHH----------------------HHccCCc-hhhhHHH
Q 023975           86 NITE-----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL----------------------NQYQAGP-TGVELAG  137 (274)
Q Consensus        86 ~~~~-----~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~----------------------~~~~~g~-~~~e~a~  137 (274)
                      ....     ..+.+.++.++.||++|+|||+.|..|+++....                      ..+++|. .+++++.
T Consensus        85 ~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~  164 (304)
T 4fk1_A           85 MITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTK  164 (304)
T ss_dssp             EEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHH
T ss_pred             EeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHH
Confidence            3322     1677888999999999999999866555332111                      0112243 4567777


Q ss_pred             HhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEccc
Q 023975          138 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTG  216 (274)
Q Consensus       138 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G  216 (274)
                      .+.  ..+.+++++.+.+.+        .+.+.+.+++.|+.++.+. +..+..+++. ..+.+.+|+++++|.+|+++|
T Consensus       165 ~~~--~~~~~v~i~~~~~~~--------~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g  233 (304)
T 4fk1_A          165 LVY--NWSTDLVIATNGNEL--------SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPT  233 (304)
T ss_dssp             HHT--TTCSCEEEECSSCCC--------CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCE
T ss_pred             HHH--hCCceEEEEeccccc--------hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeec
Confidence            776  568889888776543        3466778889999998765 6666665544 458899999999999998888


Q ss_pred             CCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          217 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ..|+..++...++  .++++|+|.||++++| +.|+|||+|||++.+
T Consensus       234 ~~~~~~~~~~~g~--~~~~~G~I~vd~~~~T-s~p~IyA~GDv~~~~  277 (304)
T 4fk1_A          234 FFRPNQFIEQLGC--ELQSNGTFVIDDFGRT-SEKNIYLAGETTTQG  277 (304)
T ss_dssp             EECSSCHHHHTTC--CCCTTSSSCSSTTCBC-SSTTEEECSHHHHTS
T ss_pred             cccCChhhhhcCe--EECCCCCEEECcCCcc-CCCCEEEEeccCCCc
Confidence            7666677776665  6788999999999999 899999999999754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.3e-33  Score=240.33  Aligned_cols=251  Identities=20%  Similarity=0.226  Sum_probs=184.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---------------------c---CCcccccee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---------------------V---EPSFGKRSV   67 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---------------------~---~~~~~~~~~   67 (274)
                      ++||+|||||++|+++|..|+ .|++|+|+|+++.+|+.|......                     +   .........
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   80 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPAL   80 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHH
Confidence            379999999999999999997 499999999998777654211000                     0   000000000


Q ss_pred             eec------------cccc--cccEEEEEeeEEEecCeEEeC-CCeEEecCEEEEccCCCCCCChh---H------HHHH
Q 023975           68 INH------------TDYL--VNGRIVASPAINITENEVLTA-EGRRVVYDYLVIATGHKDPVPKT---R------TERL  123 (274)
Q Consensus        68 ~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~li~a~G~~~~~~~~---~------~~~~  123 (274)
                      ..+            ..++  .+++++......++.+.+... ++.++.||++|+|||+.|..|+.   .      ...+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~  160 (455)
T 2yqu_A           81 MAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEA  160 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCSSSEECHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCcCcEechHHh
Confidence            000            0111  245666655555555544443 56789999999999987655431   1      1122


Q ss_pred             H----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          124 N----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       124 ~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                      .          .+++|.+++|+|..+.  ..+.+++++.+.+.+++..++.+.+.+.+.+++.|++++++++|++++.++
T Consensus       161 ~~~~~~~~~vvIiGgG~~g~e~A~~l~--~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~  238 (455)
T 2yqu_A          161 LSFPEVPKRLIVVGGGVIGLELGVVWH--RLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEA  238 (455)
T ss_dssp             TCCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEET
T ss_pred             hccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC
Confidence            1          2445899999999998  568899999999998888888999999999999999999999999998776


Q ss_pred             CceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          194 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       194 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +.+.+.+++|+++++|.||+|+|..|+.+++.....++.++++|++.||+++++ +.|+||++|||++.+...
T Consensus       239 ~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~  310 (455)
T 2yqu_A          239 KGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDVVRGPMLA  310 (455)
T ss_dssp             TEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             CEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCccc-CCCCEEEEecCCCCccCH
Confidence            667777778889999999999999998877422223335667789999999998 899999999999876544

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=6.9e-32  Score=227.86  Aligned_cols=247  Identities=21%  Similarity=0.298  Sum_probs=181.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCCceeeccceee-ecCCccc-cceeeeccccc--cccEEEEE-e
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEYFEITWASLRA-MVEPSFG-KRSVINHTDYL--VNGRIVAS-P   83 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~   83 (274)
                      +.+||+|||||++|+++|..|+ .|+  +|+|+|+.+.+.+....+.. ++..... ........+++  .+++++.. .
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~   82 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   82 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCE
Confidence            3589999999999999999997 477  79999998765433221111 1111100 11111111222  24555443 2


Q ss_pred             eEEEec--CeEEeCCCeEEecCEEEEccCCCCCCChhH---HHH---------------HHH----------ccCCchhh
Q 023975           84 AINITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR---TER---------------LNQ----------YQAGPTGV  133 (274)
Q Consensus        84 ~~~~~~--~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---~~~---------------~~~----------~~~g~~~~  133 (274)
                      +..++.  +.+.++++..+.||++|+|||..|..|+.+   ..+               +..          +++|.+++
T Consensus        83 v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~  162 (431)
T 1q1r_A           83 VTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGL  162 (431)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHH
T ss_pred             EEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHH
Confidence            344543  478888888899999999999987665432   112               111          23488999


Q ss_pred             hHHHHhhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeecc--CCCce-eEECCCCcEEeec
Q 023975          134 ELAGEIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSV--SEGSD-TYLTSTGDTINAD  209 (274)
Q Consensus       134 e~a~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~~-~v~~~~g~~~~~d  209 (274)
                      |+|..+.  ..+.+++++.+.+.+++. .++.+.+.+.+.+++.||++++++.|++++.  +++.+ .+.+.+|+++++|
T Consensus       163 E~A~~l~--~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D  240 (431)
T 1q1r_A          163 EVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPAD  240 (431)
T ss_dssp             HHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECS
T ss_pred             HHHHHHH--hCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcC
Confidence            9999998  568899999999888774 7788889999999999999999999999986  44444 6788899999999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .||+|+|..|+.+++...++.  ++ + ++.||++++| +.|+||++|||+..+.+
T Consensus       241 ~Vv~a~G~~p~~~l~~~~gl~--~~-~-gi~Vd~~~~t-s~~~IyA~GD~~~~~~~  291 (431)
T 1q1r_A          241 LVIAGIGLIPNCELASAAGLQ--VD-N-GIVINEHMQT-SDPLIMAVGDCARFHSQ  291 (431)
T ss_dssp             EEEECCCEEECCHHHHHTTCC--BS-S-SEECCTTSBC-SSTTEEECGGGEEEEET
T ss_pred             EEEECCCCCcCcchhhccCCC--CC-C-CEEECCCccc-CCCCEEEEEeEEEEccc
Confidence            999999999998888877763  33 4 4999999999 89999999999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=2.6e-33  Score=239.04  Aligned_cols=249  Identities=18%  Similarity=0.182  Sum_probs=180.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecccee---------------ee---cC-Ccc------ccce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR---------------AM---VE-PSF------GKRS   66 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~---------------~~---~~-~~~------~~~~   66 (274)
                      ++||+|||||++|+++|..|++ |++|+|+|+. .+|+.+....               ..   .. ...      ....
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~   81 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI   81 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence            3799999999999999999974 9999999998 4543321100               00   00 000      0000


Q ss_pred             eee------------ccccc--cccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCChh---H-----H
Q 023975           67 VIN------------HTDYL--VNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKT---R-----T  120 (274)
Q Consensus        67 ~~~------------~~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~~---~-----~  120 (274)
                      ...            ..+++  .+++++......++.+  .+.+.+|  .++.||++|+|+|+.|..|+.   .     .
T Consensus        82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~~~~~  161 (464)
T 2a8x_A           82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTY  161 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTTEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCceEEec
Confidence            000            00111  2456655554444444  4555667  689999999999988654431   1     1


Q ss_pred             HHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ....          .+++|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||++++++.|++++
T Consensus       162 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          162 EEQILSRELPKSIIIAGAGAIGMEFGYVLK--NYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             HHHHTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             HHHhhccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence            1221          2345899999999998  568999999999999988899999999999999999999999999998


Q ss_pred             cCCCceeEECC-CC--cEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          191 VSEGSDTYLTS-TG--DTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       191 ~~~~~~~v~~~-~g--~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .+++.+.+.+. +|  +++++|.||+|+|..|+.+++  ...++  .++++|+|.||++++| +.|+|||+|||++.+..
T Consensus       240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl--~~~~~G~i~vd~~~~t-~~~~IyA~GD~~~~~~~  316 (464)
T 2a8x_A          240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGV--ALTDRKAIGVDDYMRT-NVGHIYAIGDVNGLLQL  316 (464)
T ss_dssp             ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTC--CBCTTSSBCCCTTSBC-SSTTEEECGGGGCSSCS
T ss_pred             EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCC--ccCCCCCEeECcCCcc-CCCCEEEeECcCCCccC
Confidence            76666666654 56  689999999999999998874  44444  5677899999999998 89999999999987654


Q ss_pred             CC
Q 023975          266 AS  267 (274)
Q Consensus       266 ~~  267 (274)
                      .+
T Consensus       317 ~~  318 (464)
T 2a8x_A          317 AH  318 (464)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=5.8e-33  Score=238.56  Aligned_cols=253  Identities=20%  Similarity=0.175  Sum_probs=188.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC--------Cceeecccee--------------eec---CCccc---
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE--------YFEITWASLR--------------AMV---EPSFG---   63 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~--------~~g~~~~~~~--------------~~~---~~~~~---   63 (274)
                      .||++||||||+|+++|..+++ |.+|+|||+..        .+|++.-...              ...   ...+-   
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~  121 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF  121 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence            4899999999999999999975 99999999754        2454311000              000   00000   


Q ss_pred             cceeeecc------------------ccc--cccEEEEEeeEEEecCeEEe------CCCeEEecCEEEEccCCCCCCCh
Q 023975           64 KRSVINHT------------------DYL--VNGRIVASPAINITENEVLT------AEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        64 ~~~~~~~~------------------~~~--~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      ......+.                  ..+  .+++++.......+.+.+..      .+.+.+.++++|+|||+.|.+|+
T Consensus       122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P~  201 (542)
T 4b1b_A          122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPD  201 (542)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCCS
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCCC
Confidence            00000000                  001  24677777777777775543      23467899999999999988774


Q ss_pred             h---------HHHH----------HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCc
Q 023975          118 T---------RTER----------LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  178 (274)
Q Consensus       118 ~---------~~~~----------~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  178 (274)
                      .         ....          +..+++|++|+|+|..+.  ..|.+|+++.+ +.+++.+++++...+.+.+++.|+
T Consensus       202 ~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~--~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~gi  278 (542)
T 4b1b_A          202 DVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLN--SLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQGV  278 (542)
T ss_dssp             SSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             cccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHH--hcCCeEEEecc-cccccccchhHHHHHHHHHHhhcc
Confidence            1         1122          223455999999999998  67999999987 467888999999999999999999


Q ss_pred             EEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcE-EeCCCccccCCCCeEEec
Q 023975          179 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML-MVDENLRVKGQKNIFAIG  257 (274)
Q Consensus       179 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~i~~~G  257 (274)
                      .++++..+..++..++.+.+.+.+++++.+|.|++|+|..||.+.+..+..++.++.++++ .+|++++| +.|+|||+|
T Consensus       279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~T-s~p~IyAiG  357 (542)
T 4b1b_A          279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCT-NIPSIFAVG  357 (542)
T ss_dssp             EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBC-SSTTEEECT
T ss_pred             eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccc-cCCCeEEec
Confidence            9999999999998888888999999999999999999999999988877766667766665 77888998 899999999


Q ss_pred             cccC-CCCCCCCC
Q 023975          258 DITD-IRVSASMI  269 (274)
Q Consensus       258 d~~~-~~~~~~~~  269 (274)
                      ||++ .|.+++.+
T Consensus       358 Dv~~~~p~La~~A  370 (542)
T 4b1b_A          358 DVAENVPELAPVA  370 (542)
T ss_dssp             TSBTTCCCCHHHH
T ss_pred             cccCCchhHHHHH
Confidence            9985 46665544

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.8e-32  Score=223.61  Aligned_cols=236  Identities=25%  Similarity=0.358  Sum_probs=174.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCcccccee-eecccccc--ccEEEEE-eeEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSV-INHTDYLV--NGRIVAS-PAINI   87 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~~~~~   87 (274)
                      ..|++|||||++|+++|..|++ | +|+|+|+++.+.+....+...+......... ....+++.  +++++.. .+..+
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~i   86 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   86 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEEE
Confidence            3699999999999999999985 8 9999999987653322222222111111111 11112222  4566554 34555


Q ss_pred             ecC--eEEeCCCeEEecCEEEEccCCCCCCChhH-------------HHHH----------HHccCCchhhhHHHHhhhh
Q 023975           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR-------------TERL----------NQYQAGPTGVELAGEIAVD  142 (274)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~-------------~~~~----------~~~~~g~~~~e~a~~l~~~  142 (274)
                      +..  .+. .++.++.||++|+|||+.|..|+.+             ...+          ..+++|.+++|+|..+.  
T Consensus        87 d~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~--  163 (367)
T 1xhc_A           87 DRGRKVVI-TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLA--  163 (367)
T ss_dssp             ETTTTEEE-ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHH--
T ss_pred             ECCCCEEE-ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHH--
Confidence            533  565 5677899999999999886554311             1111          12345999999999998  


Q ss_pred             CCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          143 FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      ..+.+++++.+.+.+++ +++.+.+.+.+.+++.||+++++++|++++.    ..+.+++|+ +++|.||+|+|..|+.+
T Consensus       164 ~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~----~~v~~~~g~-i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          164 EAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANE----EGVLTNSGF-IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             HTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECS----SEEEETTEE-EECSCEEEECCEEECCH
T ss_pred             hCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe----eEEEECCCE-EEcCEEEECcCCCcCHH
Confidence            56889999999998888 8888999999999999999999999999972    246777887 99999999999999988


Q ss_pred             hhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          223 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      +++..++  ..+ + ++.||++++| +.|+|||+|||+..+
T Consensus       238 ll~~~gl--~~~-~-gi~Vd~~~~t-~~~~IyA~GD~a~~~  273 (367)
T 1xhc_A          238 LARRSGI--HTG-R-GILIDDNFRT-SAKDVYAIGDCAEYS  273 (367)
T ss_dssp             HHHHTTC--CBS-S-SEECCTTSBC-SSTTEEECGGGEEBT
T ss_pred             HHHhCCC--CCC-C-CEEECCCccc-CCCCEEEeEeeeecC
Confidence            8777666  333 4 4999999998 899999999998653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.98  E-value=2.1e-32  Score=234.41  Aligned_cols=250  Identities=17%  Similarity=0.084  Sum_probs=177.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC---------Cceeeccceee---------------------e-cC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE---------YFEITWASLRA---------------------M-VE   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~---------~~g~~~~~~~~---------------------~-~~   59 (274)
                      .++||+|||||++|+++|+.|+ .|++|+||||.+         .+|+.|.....                     + ..
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            4689999999999999999997 599999999521         25554422100                     0 00


Q ss_pred             ----Cccccceeeecc------------cc--ccccEEEEEeeEEEecC--eEEeCCC-eEEecCEEEEccCCCCCCChh
Q 023975           60 ----PSFGKRSVINHT------------DY--LVNGRIVASPAINITEN--EVLTAEG-RRVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        60 ----~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~-~~~~~~~li~a~G~~~~~~~~  118 (274)
                          ..........+.            ..  ..+++++.......+.+  .+.+.++ ..+.||++|+|||+.|..|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~i  167 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI  167 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCSS
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCCC
Confidence                000000000000            00  12456666666556655  3444555 479999999999988765543


Q ss_pred             HHH--------HHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEE
Q 023975          119 RTE--------RLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  180 (274)
Q Consensus       119 ~~~--------~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  180 (274)
                      +..        .+.          .+++|.+++|+|..+.  ..+.+++++.+ ..+++.+++.+.+.+.+.+++.||++
T Consensus       168 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~Gv~i  244 (483)
T 3dgh_A          168 PGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLK--GLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPF  244 (483)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCcccccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHH--HcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCCCEE
Confidence            221        111          1334899999999998  56899999988 45677888999999999999999999


Q ss_pred             EcCceeeeeccCCC-ceeEECCCCc-----EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeE
Q 023975          181 KLGERVNLDSVSEG-SDTYLTSTGD-----TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIF  254 (274)
Q Consensus       181 ~~~~~v~~i~~~~~-~~~v~~~~g~-----~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~  254 (274)
                      ++++.+.+++.+++ .+.+.+.+++     ++++|.||+|+|..|+.+++.....++.+++ |++.||++++| +.|+||
T Consensus       245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t-~~~~Iy  322 (483)
T 3dgh_A          245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEAT-NVANIY  322 (483)
T ss_dssp             EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBC-SSTTEE
T ss_pred             EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCcc-CCCCEE
Confidence            99999999986544 4566665543     7999999999999999888743334446667 99999999998 899999


Q ss_pred             Eecccc-CCCCCC
Q 023975          255 AIGDIT-DIRVSA  266 (274)
Q Consensus       255 ~~Gd~~-~~~~~~  266 (274)
                      |+|||+ +.|...
T Consensus       323 A~GD~~~~~~~~~  335 (483)
T 3dgh_A          323 AVGDIIYGKPELT  335 (483)
T ss_dssp             ECSTTBTTSCCCH
T ss_pred             EEEcccCCCCccH
Confidence            999998 545443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.98  E-value=3e-32  Score=238.88  Aligned_cols=247  Identities=21%  Similarity=0.346  Sum_probs=182.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCccc--cceeeecc-ccc--cccEEE-EE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHT-DYL--VNGRIV-AS   82 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~-~~~--~~~~~~-~~   82 (274)
                      +++||+|||||++|+++|+.|+ .  |++|+|||+++.+++....+.........  ........ .+.  .++.+. ..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            4589999999999999999997 3  89999999999877544333222222111  11111111 111  134442 23


Q ss_pred             eeEEEec--CeEEe---CCCe--EEecCEEEEccCCCCCCC---hh-H------------HHH------------HHHcc
Q 023975           83 PAINITE--NEVLT---AEGR--RVVYDYLVIATGHKDPVP---KT-R------------TER------------LNQYQ  127 (274)
Q Consensus        83 ~~~~~~~--~~v~~---~~~~--~~~~~~li~a~G~~~~~~---~~-~------------~~~------------~~~~~  127 (274)
                      .+..++.  +.+.+   .++.  .+.||++|+|||+.|..|   +. +            ...            +..++
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViG  194 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIG  194 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEEC
Confidence            4444443  34444   2454  789999999999875443   32 1            111            11234


Q ss_pred             CCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEe
Q 023975          128 AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN  207 (274)
Q Consensus       128 ~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~  207 (274)
                      +|.+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||++++++.|++++.+++  .+.+.+|++++
T Consensus       195 gG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~  270 (588)
T 3ics_A          195 GGFIGVEMVENLR--ERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVIQ  270 (588)
T ss_dssp             CSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEEE
T ss_pred             CCHHHHHHHHHHH--hCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEEE
Confidence            5899999999998  5689999999999988888899999999999999999999999999976544  47778888999


Q ss_pred             ecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       208 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +|.||+|+|+.|+.+++...++  .++++|++.||++++| +.|+|||+|||+..+..
T Consensus       271 ~D~Vi~a~G~~p~~~~l~~~g~--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~~  325 (588)
T 3ics_A          271 TDMLILAIGVQPESSLAKGAGL--ALGVRGTIKVNEKFQT-SDPHIYAIGDAIEVKDF  325 (588)
T ss_dssp             CSEEEECSCEEECCHHHHHTTC--CBCGGGCBCCCTTSBC-SSTTEEECGGGBCEEBT
T ss_pred             cCEEEEccCCCCChHHHHhcCc--eEcCCCCEEECCcccc-CCCCEEEeeeeeecccc
Confidence            9999999999999988876665  5678899999999999 89999999999965543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.98  E-value=2.9e-33  Score=239.67  Aligned_cols=249  Identities=18%  Similarity=0.208  Sum_probs=180.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecccee---------------eec----CCccc--cceeeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLR---------------AMV----EPSFG--KRSVINH   70 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~---------------~~~----~~~~~--~~~~~~~   70 (274)
                      ++||+|||||++|+++|..|++ |++|+|+|+++.+|+.|....               .+.    .....  ......+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~   84 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV   84 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence            4899999999999999999974 999999999887775542210               000    00000  0000000


Q ss_pred             ------------------cccc--cccEEEEEeeEEEecC--eEEeCCC--eE------EecCEEEEccCCCCC-CChhH
Q 023975           71 ------------------TDYL--VNGRIVASPAINITEN--EVLTAEG--RR------VVYDYLVIATGHKDP-VPKTR  119 (274)
Q Consensus        71 ------------------~~~~--~~~~~~~~~~~~~~~~--~v~~~~~--~~------~~~~~li~a~G~~~~-~~~~~  119 (274)
                                        ..++  .+++++.......+.+  .+.+.+|  ..      +.||++|+|||+.|. +|+..
T Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~~  164 (478)
T 1v59_A           85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIE  164 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCCC
Confidence                              0011  2456655554444444  3444455  46      999999999998753 33211


Q ss_pred             --------HHHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEE
Q 023975          120 --------TERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK  181 (274)
Q Consensus       120 --------~~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~  181 (274)
                              .....          .+++|.+++|+|..+.  ..+.+|+++.+.+.+++.+++.+.+.+.+.+++.||+++
T Consensus       165 ~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~  242 (478)
T 1v59_A          165 IDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYS--RLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFK  242 (478)
T ss_dssp             CCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHH--HcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence                    11221          2455999999999998  568999999999999888889999999999999999999


Q ss_pred             cCceeeeecc--CCCceeEECC-----CCcEEeecEEEEcccCCCCch--hhcccccccccCCCCcEEeCCCccccCCCC
Q 023975          182 LGERVNLDSV--SEGSDTYLTS-----TGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDENLRVKGQKN  252 (274)
Q Consensus       182 ~~~~v~~i~~--~~~~~~v~~~-----~g~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  252 (274)
                      ++++|++++.  +++...+.+.     +++++++|.||+|+|..|+.+  ++...++  .++++|+|.||++++| +.|+
T Consensus       243 ~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~--~~~~~G~i~vd~~~~t-~~~~  319 (478)
T 1v59_A          243 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGL--EVDKRGRLVIDDQFNS-KFPH  319 (478)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTC--CBCTTSCBCCCTTSBC-SSTT
T ss_pred             eCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCc--eeCCCCCEeECcCCcc-CCCC
Confidence            9999999986  4555566654     356899999999999999987  5665555  5677899999999998 8999


Q ss_pred             eEEeccccCCCCCC
Q 023975          253 IFAIGDITDIRVSA  266 (274)
Q Consensus       253 i~~~Gd~~~~~~~~  266 (274)
                      |||+|||++.+...
T Consensus       320 IyA~GD~~~~~~~~  333 (478)
T 1v59_A          320 IKVVGDVTFGPMLA  333 (478)
T ss_dssp             EEECGGGSSSCCCH
T ss_pred             EEEeeccCCCcccH
Confidence            99999999876544

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.98  E-value=2.7e-32  Score=235.25  Aligned_cols=251  Identities=16%  Similarity=0.128  Sum_probs=175.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Cceeeccceeee----------------------cC-
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWASLRAM----------------------VE-   59 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~--------~~g~~~~~~~~~----------------------~~-   59 (274)
                      ..+||+||||||+|+++|..|+ .|++|+|||+.+        .+|+.+......                      .. 
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            3589999999999999999997 599999999964        455543221000                      00 


Q ss_pred             ---Cccccceeeecc------------cc--ccccEEEEEeeEEEecC--eEEeCCCe--EEecCEEEEccCCCCCCChh
Q 023975           60 ---PSFGKRSVINHT------------DY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        60 ---~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~li~a~G~~~~~~~~  118 (274)
                         ..........+.            ..  ..+++++......++.+  .+...+|.  ++.||++|+|||+.|..|++
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i  190 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGI  190 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCC
Confidence               000000000000            00  12466776666666666  34444453  79999999999998766543


Q ss_pred             HH--------HHHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEE
Q 023975          119 RT--------ERLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV  180 (274)
Q Consensus       119 ~~--------~~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  180 (274)
                      +.        ..+.          .+++|.+++|+|..+.  ..+.+|+++.+. .+++.+++.+.+.+.+.+++.||++
T Consensus       191 ~G~~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v  267 (519)
T 3qfa_A          191 PGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKF  267 (519)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCccCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEE
Confidence            32        1111          1334899999999998  568899999884 6778888999999999999999999


Q ss_pred             EcCceeeeeccCC----CceeE--ECCCC-c--EEeecEEEEcccCCCCchhhcccccccccC-CCCcEEeCCCccccCC
Q 023975          181 KLGERVNLDSVSE----GSDTY--LTSTG-D--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQ  250 (274)
Q Consensus       181 ~~~~~v~~i~~~~----~~~~v--~~~~g-~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~  250 (274)
                      ++++.+.+++...    +.+.+  ...+| +  ++++|.|++|+|..|+.+++.....++.++ .+|++.||++++| +.
T Consensus       268 ~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~T-s~  346 (519)
T 3qfa_A          268 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQT-NV  346 (519)
T ss_dssp             EESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSBC-SS
T ss_pred             EeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCcc-CC
Confidence            9998887776432    23333  33455 2  578999999999999988754333444676 5799999999998 89


Q ss_pred             CCeEEecccc-CCCCCC
Q 023975          251 KNIFAIGDIT-DIRVSA  266 (274)
Q Consensus       251 ~~i~~~Gd~~-~~~~~~  266 (274)
                      |+|||+|||+ +.+...
T Consensus       347 ~~IyA~GD~~~g~~~~~  363 (519)
T 3qfa_A          347 PYIYAIGDILEDKVELT  363 (519)
T ss_dssp             TTEEECGGGBSSSCCCH
T ss_pred             CCEEEEEeccCCCCccH
Confidence            9999999998 555443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.98  E-value=9.2e-33  Score=229.47  Aligned_cols=234  Identities=22%  Similarity=0.324  Sum_probs=178.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccc-cceeeecccccc--ccEEEEE-eeEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYLV--NGRIVAS-PAIN   86 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-~~~~   86 (274)
                      +..+|+|||||+||++||..|+ ++.+|+|||+++.+++....+...+..... .+......+++.  ++++... .+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            3479999999999999999996 489999999999877644444333322211 122222222222  5566543 4555


Q ss_pred             Ee--cCeEEeCCCeEEecCEEEEccCCCCCCChhH-------------HH----------HHHHccCCchhhhHHHHhhh
Q 023975           87 IT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR-------------TE----------RLNQYQAGPTGVELAGEIAV  141 (274)
Q Consensus        87 ~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~-------------~~----------~~~~~~~g~~~~e~a~~l~~  141 (274)
                      ++  .+.+.++++.++.||++|+|||+.|..|+.+             ..          ++..+++|.+|+|+|..+. 
T Consensus        88 id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~-  166 (385)
T 3klj_A           88 IDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII-  166 (385)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHH-
T ss_pred             EECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH-
Confidence            55  3488889999999999999999886544311             11          1222455999999999998 


Q ss_pred             hCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          142 DFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                       ..+.+++++.+.+.+++. +++.+.+.+.+.+++.||+++.++.+.++             |+++++|.||+|+|+.|+
T Consensus       167 -~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~  232 (385)
T 3klj_A          167 -DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPN  232 (385)
T ss_dssp             -HHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEEC
T ss_pred             -hCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccC
Confidence             458899999999998875 78889999999999999999999988776             567999999999999999


Q ss_pred             chhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          221 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .+++...++.  .+ + ++.||++++| +.|+|||+|||+..+..
T Consensus       233 ~~~~~~~gl~--~~-~-gi~vd~~~~t-~~~~IyA~GD~a~~~~~  272 (385)
T 3klj_A          233 LDFIKDTEIA--SK-R-GILVNDHMET-SIKDIYACGDVAEFYGK  272 (385)
T ss_dssp             CGGGTTSCCC--BS-S-SEEECTTCBC-SSTTEEECGGGEEETTB
T ss_pred             hhhhhhcCCC--cC-C-CEEECCCccc-CCCCEEEEEeeEecCCC
Confidence            9998877763  32 4 4999999999 89999999999986543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.98  E-value=2.4e-32  Score=234.31  Aligned_cols=250  Identities=17%  Similarity=0.118  Sum_probs=178.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcC--------CCCceeeccceeee--------------------c----
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP--------KEYFEITWASLRAM--------------------V----   58 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~--------~~~~g~~~~~~~~~--------------------~----   58 (274)
                      +++||+|||||++|+++|..|+ .|++|+|+||        ...+|+.|......                    .    
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            4589999999999999999997 5999999998        44566544221000                    0    


Q ss_pred             --CCccccceeeecc------------cc--ccccEEEEEeeEEEecC--eEEeCCC--eEEecCEEEEccCCCCCCCh-
Q 023975           59 --EPSFGKRSVINHT------------DY--LVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPK-  117 (274)
Q Consensus        59 --~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~li~a~G~~~~~~~-  117 (274)
                        ...........+.            ..  ..+++++......++.+  .+...++  .++.||++|+|||+.|..|+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence              0000000000000            00  12466666666666655  3444555  57899999999999866544 


Q ss_pred             hHH--------HHHHH----------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcE
Q 023975          118 TRT--------ERLNQ----------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD  179 (274)
Q Consensus       118 ~~~--------~~~~~----------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~  179 (274)
                      ++.        ..+..          +++|.+++|+|..+.  ..+.+|+++.+. .+++.+++.+.+.+.+.+++.||+
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLT--GIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCCCE
Confidence            321        12211          334899999999998  568999999886 467778899999999999999999


Q ss_pred             EEcCceeeeeccC-CCceeEECCC---Cc--EEeecEEEEcccCCCCchhhcccccccccC-CCCcEEeCCCccccCCCC
Q 023975          180 VKLGERVNLDSVS-EGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLKDTILKDSLD-THGMLMVDENLRVKGQKN  252 (274)
Q Consensus       180 i~~~~~v~~i~~~-~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~  252 (274)
                      +++++.+.+++.. ++.+.+.+.+   |+  ++++|.||+|+|+.|+.+++.....++.++ ++|++.||++++| +.|+
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t-~~~~  320 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEAT-SVPH  320 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBC-SSTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCcc-CCCC
Confidence            9999999999764 3445565543   54  579999999999999998864444445677 7899999999998 8999


Q ss_pred             eEEecccc-CCCCC
Q 023975          253 IFAIGDIT-DIRVS  265 (274)
Q Consensus       253 i~~~Gd~~-~~~~~  265 (274)
                      |||+|||+ +.|..
T Consensus       321 IyA~GD~~~~~~~~  334 (488)
T 3dgz_A          321 IYAIGDVAEGRPEL  334 (488)
T ss_dssp             EEECGGGBTTCCCC
T ss_pred             EEEeEEecCCCCcc
Confidence            99999997 44443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.97  E-value=1.9e-31  Score=222.26  Aligned_cols=243  Identities=20%  Similarity=0.258  Sum_probs=176.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceeeecCCccc-cceeeec-cccc--cccEEEEE-ee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH-TDYL--VNGRIVAS-PA   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~~~~~~~~-~~~~~~~-~~~~--~~~~~~~~-~~   84 (274)
                      ++||+|||||++|+++|..|++ |  .+|+++|++....+....+......... ....... ..+.  .+++++.. .+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v   83 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRV   83 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEE
Confidence            5899999999999999999974 6  6799999986322111112111111111 1111111 1111  24555532 33


Q ss_pred             EEEe--cCeEEeCCCeEEecCEEEEccCCCCCCChhH---------------HHHH----------HHccCCchhhhHHH
Q 023975           85 INIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------------TERL----------NQYQAGPTGVELAG  137 (274)
Q Consensus        85 ~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~---------------~~~~----------~~~~~g~~~~e~a~  137 (274)
                      ..++  .+.+.+++ ..+.||++++|||+.|..|+.+               ...+          ..+++|.+++|+|.
T Consensus        84 ~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~  162 (384)
T 2v3a_A           84 TGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFAN  162 (384)
T ss_dssp             CEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHH
T ss_pred             EEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHH
Confidence            4444  35676654 5799999999999886554311               1111          11345899999999


Q ss_pred             HhhhhCCCCeEEEEeCCCccCCc-CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc
Q 023975          138 EIAVDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG  216 (274)
Q Consensus       138 ~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G  216 (274)
                      .+.  ..+.+++++.+.+.+++. .++.+.+.+.+.+++.|++++++++|++++.+++.+.+.+++|+++++|.||+|+|
T Consensus       163 ~l~--~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G  240 (384)
T 2v3a_A          163 DLS--SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG  240 (384)
T ss_dssp             HHH--HTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred             HHH--hCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcC
Confidence            998  568999999999888775 47788899999999999999999999999876667788888999999999999999


Q ss_pred             CCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          217 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ..|+.++++..++  .++ +| +.||++++| +.|+|||+|||+..+
T Consensus       241 ~~p~~~l~~~~g~--~~~-~g-i~vd~~~~t-~~~~IyA~GD~~~~~  282 (384)
T 2v3a_A          241 LRPRTELAFAAGL--AVN-RG-IVVDRSLRT-SHANIYALGDCAEVD  282 (384)
T ss_dssp             EEECCHHHHHTTC--CBS-SS-EEECTTCBC-SSTTEEECGGGEEET
T ss_pred             CCcCHHHHHHCCC--CCC-CC-EEECCCCCC-CCCCEEEeeeeeeEC
Confidence            9999888777666  444 56 999999998 899999999999644

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.97  E-value=6.3e-32  Score=219.27  Aligned_cols=243  Identities=19%  Similarity=0.176  Sum_probs=158.2

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-Cccccc---ee-eeccccc--cccEEE
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFGKR---SV-INHTDYL--VNGRIV   80 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-~~~~~~---~~-~~~~~~~--~~~~~~   80 (274)
                      |+.++|||+||||||||++||..|+ .|++|+|||+.. +|+.......... +.+...   .+ .......  ....+.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~-~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI-PGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQ   80 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCCeeecccccCCcCCccccchHHHHHHHHHHHhhcccccc
Confidence            4456799999999999999999997 499999999865 4433211110000 000000   00 0000000  011221


Q ss_pred             EEeeE---EEecCeEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhH
Q 023975           81 ASPAI---NITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVEL  135 (274)
Q Consensus        81 ~~~~~---~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~  135 (274)
                      .....   ..........++.++.||++|+|||+.|..|+++.                      +++..+++|++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~  160 (312)
T 4gcm_A           81 YGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEE  160 (312)
T ss_dssp             ECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHH
T ss_pred             ceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHH
Confidence            11111   11122555667789999999999998765443211                      122234559999999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee----EEC--CCCcEEeec
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT----YLT--STGDTINAD  209 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~----v~~--~~g~~~~~d  209 (274)
                      |..+.  ..+.+|+++.+.+.+++.     .....+.+++.++.......+..+...+....    ...  .++..+++|
T Consensus       161 A~~l~--~~g~~Vtlv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  233 (312)
T 4gcm_A          161 GTFLT--KFADKVTIVHRRDELRAQ-----RILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEAD  233 (312)
T ss_dssp             HHHHT--TTCSEEEEECSSSSCCSC-----HHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHHH--hcCCEEEEEecccccCcc-----hhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeee
Confidence            99998  679999999998876542     22334556777888887777666554433221    122  234579999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      .|++++|..|+..++...++   .+++|+|.||++++| +.|+|||+|||++.+
T Consensus       234 ~v~~~~g~~~~~~~~~~~g~---~~~~G~I~vd~~~~T-s~pgIyA~GDv~~~~  283 (312)
T 4gcm_A          234 GVFIYIGMKPLTAPFKDLGI---TNDVGYIVTKDDMTT-SVPGIFAAGDVRDKG  283 (312)
T ss_dssp             EEEECSCEEESCGGGGGGTC---BCTTSCBCCCTTSBC-SSTTEEECSTTBSCS
T ss_pred             eEEeecCCCcCchhHHhcce---ecCCCeEeeCCCCcc-CCCCEEEEeecCCCc
Confidence            99999999999988877665   457899999999999 899999999999754

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=4.8e-32  Score=230.62  Aligned_cols=244  Identities=17%  Similarity=0.192  Sum_probs=178.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceee---------------e--------cCC-----ccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRA---------------M--------VEP-----SFG   63 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~---------------~--------~~~-----~~~   63 (274)
                      ++||+|||||++|+++|..|++ |++|+|+|+ +.+|+.|.....               .        ..-     ...
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   83 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLD   83 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCccC
Confidence            4899999999999999999974 999999999 566654321100               0        000     000


Q ss_pred             cceeeec------------cccc--cccEEEEEeeEEEecCeEEeCCCeEEecCEEEEccCCCCCCCh-hH-------HH
Q 023975           64 KRSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPK-TR-------TE  121 (274)
Q Consensus        64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~-~~-------~~  121 (274)
                      ...+..+            ..++  .+++++......++.+.+.+++ ..+.||++|+|||+.|..|+ .+       ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~~~~v~~~~  162 (458)
T 1lvl_A           84 IGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG-QRIQCEHLLLATGSSSVELPMLPLGGPVISST  162 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT-EEEECSEEEECCCEEECCBTTBCCBTTEECHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCccCcEecHH
Confidence            0000000            0111  2456666655556666777765 78999999999999876543 11       11


Q ss_pred             HH----------HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          122 RL----------NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       122 ~~----------~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      ..          ..+++|.+|+|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.||+++++++|++++.
T Consensus       163 ~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~  240 (458)
T 1lvl_A          163 EALAPKALPQHLVVVGGGYIGLELGIAYR--KLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN  240 (458)
T ss_dssp             HHTCCSSCCSEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET
T ss_pred             HHhhhhccCCeEEEECcCHHHHHHHHHHH--HCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe
Confidence            11          12344999999999998  4588999999999988888899999999999999999999999999986


Q ss_pred             CCCceeEECCCC--cEEeecEEEEcccCCCCchhh--cccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          192 SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWL--KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       192 ~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                       ++ +.+...+|  +++++|.||+|+|..|+.+++  ...++  .++++ ++.||++++| +.|+||++|||++.+...
T Consensus       241 -~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~--~~~~~-~i~vd~~~~t-~~~~Iya~GD~~~~~~~~  313 (458)
T 1lvl_A          241 -GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDL--KMNGA-AIAIDERCQT-SMHNVWAIGDVAGEPMLA  313 (458)
T ss_dssp             -TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCC--CEETT-EECCCTTCBC-SSTTEEECGGGGCSSCCH
T ss_pred             -CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCC--cccCC-EEeECCCCcC-CCCCEEEeeccCCCcccH
Confidence             33 55665556  689999999999999998864  44444  45556 8999999998 899999999999876543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.97  E-value=1.5e-30  Score=211.31  Aligned_cols=241  Identities=19%  Similarity=0.200  Sum_probs=158.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-cee--eecC--Cccccc----ee-eeccccc--cccE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLR--AMVE--PSFGKR----SV-INHTDYL--VNGR   78 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~--~~~~--~~~~~~----~~-~~~~~~~--~~~~   78 (274)
                      .+|||+||||||||++||..|+ +|++|+|+|+....+..+. .+.  ..+.  +.+...    .+ ....+..  ....
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~   82 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTT   82 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcE
Confidence            4599999999999999999997 5999999999765332211 000  0000  000000    00 0000000  1223


Q ss_pred             EEEEeeEEEec----CeEEeCCCeEEecCEEEEccCCCCCCChhHHH------------------------HHHHccCCc
Q 023975           79 IVASPAINITE----NEVLTAEGRRVVYDYLVIATGHKDPVPKTRTE------------------------RLNQYQAGP  130 (274)
Q Consensus        79 ~~~~~~~~~~~----~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~------------------------~~~~~~~g~  130 (274)
                      +....+.....    ..+.+.++.++.|+++|+|||+.|..|+++..                        ++..+++|.
T Consensus        83 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~  162 (314)
T 4a5l_A           83 IITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGD  162 (314)
T ss_dssp             EECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSH
T ss_pred             EEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCCh
Confidence            32222222221    15667788899999999999987654432211                        112234499


Q ss_pred             hhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce---eEE---CCCCc
Q 023975          131 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD---TYL---TSTGD  204 (274)
Q Consensus       131 ~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~---~v~---~~~g~  204 (274)
                      +++|+|..+.  ..+.+|+++.+.+....     ......+.....+++.+....+.+++......   .+.   ..+++
T Consensus       163 ig~e~A~~l~--~~G~~Vt~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  235 (314)
T 4a5l_A          163 AAMEEALHLT--KYGSKVIILHRRDAFRA-----SKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYK  235 (314)
T ss_dssp             HHHHHHHHHT--TTSSEEEEECSSSSCCS-----CHHHHHHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHH--HhCCeeeeecccccccc-----cchhhhhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccce
Confidence            9999999998  77999999988765432     12333445566788888888888877554422   222   34456


Q ss_pred             EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          205 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       205 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++++|.|++++|..|+.+++...   ..++++|.+ +|++++| +.|+|||+|||++.|.
T Consensus       236 ~i~~d~vi~a~G~~pn~~~l~~~---~~~~~~G~i-v~~~~~T-s~pgIyA~GDv~~~~~  290 (314)
T 4a5l_A          236 VVPVAGLFYAIGHSPNSKFLGGQ---VKTADDGYI-LTEGPKT-SVDGVFACGDVCDRVY  290 (314)
T ss_dssp             EEECSEEEECSCEEESCGGGTTS---SCBCTTSCB-CCBTTBC-SSTTEEECSTTTCSSC
T ss_pred             eeccccceEecccccChhHhccc---ceEcCCeeE-eCCCCcc-CCCCEEEEEeccCCcc
Confidence            89999999999999999988653   246677766 8889999 8999999999998764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.97  E-value=3.1e-31  Score=227.32  Aligned_cols=250  Identities=19%  Similarity=0.211  Sum_probs=180.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeec-CCc---------------------ccc-c
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMV-EPS---------------------FGK-R   65 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~-~~~---------------------~~~-~   65 (274)
                      .++||+|||||+||+++|..|+ .  +.+|+|||+++.+++....+...+ ...                     +.. .
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            3589999999999999999886 2  899999999987654322111100 000                     000 0


Q ss_pred             eeeecccc----ccccEEEEE-eeEEEe--cCeEEeCCCeEEecCEEEEccCCCCCCChhHH-------H----------
Q 023975           66 SVINHTDY----LVNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------E----------  121 (274)
Q Consensus        66 ~~~~~~~~----~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~-------~----------  121 (274)
                      .+.....+    ..+++++.. .+..++  .+.+.+++|.++.||+||+|||+.|..++...       .          
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d  169 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGD  169 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHH
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHH
Confidence            00000011    125566654 444454  45788888889999999999999877654321       0          


Q ss_pred             --HHH----------HccCCchhhhHHHHhhhhC--CCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          122 --RLN----------QYQAGPTGVELAGEIAVDF--PEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       122 --~~~----------~~~~g~~~~e~a~~l~~~~--~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                        .+.          .+++|.+++|+|..+....  .+.+++++.+.+.++. .+++.+.+.+.+.+++.||++++++.|
T Consensus       170 ~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V  249 (493)
T 1m6i_A          170 FRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV  249 (493)
T ss_dssp             HHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred             HHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEE
Confidence              011          1234899999999987421  3678999988766544 356678888999999999999999999


Q ss_pred             eeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCC-CCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      ++++.+++.+.+++.+|++++||.||+|+|..|+.+++...++  .+++ +|++.||+++++  .|+|||+|||+..+..
T Consensus       250 ~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl--~~~~~~ggi~Vd~~l~t--~~~IyA~GD~a~~~~~  325 (493)
T 1m6i_A          250 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGL--EIDSDFGGFRVNAELQA--RSNIWVAGDAACFYDI  325 (493)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTC--CBCTTTCSEECCTTCEE--ETTEEECGGGEEEEET
T ss_pred             EEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCC--ccccCCCcEEECCCccc--CCCeeEeeeeEeccCc
Confidence            9998666666788889999999999999999999988876666  4554 588999999998  5999999999986543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.97  E-value=4.1e-30  Score=217.02  Aligned_cols=249  Identities=23%  Similarity=0.217  Sum_probs=171.3

Q ss_pred             CcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEEEEeeEEEe
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT   88 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   88 (274)
                      ++|+|||||+||+++|..|++   +++|+|||+++++.+.+.............+...+..+++.  +++++.+++..++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            689999999999999999973   58999999999876543322111111112233344444443  5788888887777


Q ss_pred             c--CeEEeCCCeEEecCEEEEccCCCC--CCChhH---------------HHHHHHcc--------CCc-------hhhh
Q 023975           89 E--NEVLTAEGRRVVYDYLVIATGHKD--PVPKTR---------------TERLNQYQ--------AGP-------TGVE  134 (274)
Q Consensus        89 ~--~~v~~~~~~~~~~~~li~a~G~~~--~~~~~~---------------~~~~~~~~--------~g~-------~~~e  134 (274)
                      .  +.|.+++|++++||+||+|||+.+  .+|+..               .+.+..+.        ++.       .+.|
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e  162 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYE  162 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHH
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCCccCCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHH
Confidence            4  489999999999999999999873  344421               01121111        022       2234


Q ss_pred             HHHHhh----hhC--CCCeEEEEeCCCccCC---cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC--
Q 023975          135 LAGEIA----VDF--PEKKVTLVHKGSRLLE---FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--  203 (274)
Q Consensus       135 ~a~~l~----~~~--~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--  203 (274)
                      ++..+.    ...  ...+++++...+.+.+   ...+...+.+.+.++++||++++++.|++++.  +.+.+...+|  
T Consensus       163 ~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~~~~~~~~g~~  240 (430)
T 3hyw_A          163 FALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DKVIYEDLNGNT  240 (430)
T ss_dssp             HHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SEEEEECTTSCE
T ss_pred             HHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--CceEEEeeCCCc
Confidence            433322    111  1346788877665432   33455677788899999999999999999863  4555555554  


Q ss_pred             cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          204 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       204 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +++++|.+++++|..|+ +++...+..+..+.+|++.||+++|++++|||||+|||+..|..
T Consensus       241 ~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~  301 (430)
T 3hyw_A          241 HEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPI  301 (430)
T ss_dssp             EEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCS
T ss_pred             eEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCc
Confidence            48999999999999985 66666665445556778999999996699999999999998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.97  E-value=2e-31  Score=217.15  Aligned_cols=239  Identities=18%  Similarity=0.179  Sum_probs=168.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-Ccccc---ceeee-ccccc--cccEEEEEe
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFGK---RSVIN-HTDYL--VNGRIVASP   83 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-~~~~~---~~~~~-~~~~~--~~~~~~~~~   83 (274)
                      +++||+|||||++|+++|+.|+ +|++|+|+|++  +|+.|........ +.+..   ..+.. ..+..  .++++....
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   91 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDI   91 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESC
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            3589999999999999999997 59999999998  5554433111100 11100   00000 00111  134444445


Q ss_pred             eEEEecC----eEEeCCCeEEecCEEEEccCCCCCCChhHH--------------H--------HHHHccCCchhhhHHH
Q 023975           84 AINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------------E--------RLNQYQAGPTGVELAG  137 (274)
Q Consensus        84 ~~~~~~~----~v~~~~~~~~~~~~li~a~G~~~~~~~~~~--------------~--------~~~~~~~g~~~~e~a~  137 (274)
                      +..++..    .+.++++..+.||++|+|+|..|..|..+.              .        .+..+++|.+++|++.
T Consensus        92 v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~  171 (323)
T 3f8d_A           92 VEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAE  171 (323)
T ss_dssp             EEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHH
T ss_pred             EEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHH
Confidence            5555432    567777789999999999998855443211              0        1111334889999999


Q ss_pred             HhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHH-HhCCcEEEcCceeeeeccCCCceeEECCC---Cc--EEeecEE
Q 023975          138 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCH  211 (274)
Q Consensus       138 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~v  211 (274)
                      .+..  .+.+++++.+.+.+.+  .+    .+.+.+ ++.||+++.++.+.++..+++...+.+.+   |+  ++++|.|
T Consensus       172 ~l~~--~g~~v~~~~~~~~~~~--~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~v  243 (323)
T 3f8d_A          172 ILSS--YSTKVYLIHRRDTFKA--QP----IYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGV  243 (323)
T ss_dssp             HHHH--HSSEEEEECSSSSCCS--CH----HHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             HHHH--hCCeEEEEEeCCCCCc--CH----HHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEE
Confidence            9984  4789999999887655  22    333434 44599999999999998775544566554   75  7999999


Q ss_pred             EEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          212 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       212 v~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      |+|+|+.|+.+++...++  .++++|++.||++++| +.|+||++|||++.+
T Consensus       244 v~a~G~~p~~~~~~~~g~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  292 (323)
T 3f8d_A          244 FIEIGFDPPTDFAKSNGI--ETDTNGYIKVDEWMRT-SVPGVFAAGDCTSAW  292 (323)
T ss_dssp             EECCCEECCHHHHHHTTC--CBCTTSSBCCCTTCBC-SSTTEEECSTTBSTT
T ss_pred             EEEECCCCChhHHhhcCe--eecCCCcEecCCCcee-cCCCEEEcceecCCC
Confidence            999999999888877666  5678999999999998 899999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.97  E-value=1.2e-30  Score=223.22  Aligned_cols=246  Identities=18%  Similarity=0.268  Sum_probs=176.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCcc-ccce-eeeccccc---cccEEEE-Ee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSF-GKRS-VINHTDYL---VNGRIVA-SP   83 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~~~~~~~-~~   83 (274)
                      ++||+|||||++|+++|..|++   |.+|+|||+.+.+++....+........ .... .....+.+   .+++++. ..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~  115 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE  115 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence            4799999999999999999973   8999999999876543322221111111 0111 11111111   1455543 34


Q ss_pred             eEEEe--cCeEEeC---CCe--EEecCEEEEccCCCCCCCh---hH------------HHHHH------------HccCC
Q 023975           84 AINIT--ENEVLTA---EGR--RVVYDYLVIATGHKDPVPK---TR------------TERLN------------QYQAG  129 (274)
Q Consensus        84 ~~~~~--~~~v~~~---~~~--~~~~~~li~a~G~~~~~~~---~~------------~~~~~------------~~~~g  129 (274)
                      +..++  .+.+.+.   +|.  ++.||++|+|||+.|..|+   .+            ...+.            .+++|
T Consensus       116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            44444  3345443   355  7899999999998765443   11            11111            12448


Q ss_pred             chhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeec
Q 023975          130 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINAD  209 (274)
Q Consensus       130 ~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d  209 (274)
                      .+++|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|+++++++.|++++.+++...+.++ +.++++|
T Consensus       196 ~~g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~-~~~i~~D  272 (480)
T 3cgb_A          196 AIGLEMAETFV--ELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD-KGTYKAD  272 (480)
T ss_dssp             HHHHHHHHHHH--HTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET-TEEEECS
T ss_pred             HHHHHHHHHHH--hcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC-CCEEEcC
Confidence            89999999988  56889999999988888888899999999999999999999999999865332234554 4589999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .||+|+|..|+.+++...++  .++++|++.||++++| +.|+|||+|||+..+.
T Consensus       273 ~vi~a~G~~p~~~~l~~~g~--~~~~~G~I~Vd~~~~t-s~p~IyA~GD~~~~~~  324 (480)
T 3cgb_A          273 LVLVSVGVKPNTDFLEGTNI--RTNHKGAIEVNAYMQT-NVQDVYAAGDCATHYH  324 (480)
T ss_dssp             EEEECSCEEESCGGGTTSCC--CBCTTSCBCCCTTSBC-SSTTEEECGGGBCEEB
T ss_pred             EEEECcCCCcChHHHHhCCc--ccCCCCCEEECCCccC-CCCCEEEeeeEEEecC
Confidence            99999999999888877665  5677899999999999 7999999999997654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.97  E-value=2e-31  Score=223.60  Aligned_cols=250  Identities=21%  Similarity=0.220  Sum_probs=173.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc-cccEEEEEeeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (274)
                      .++|+|||||+||+++|..|++   +.+|+|||+++...+.+.....................+. .+++++...+..++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            3789999999999999999863   5799999999875433221111111111111112222222 26788888877777


Q ss_pred             c--CeEEeCCCeEEecCEEEEccCCCCCCC---hhH--------------------HHHHHHccC---------------
Q 023975           89 E--NEVLTAEGRRVVYDYLVIATGHKDPVP---KTR--------------------TERLNQYQA---------------  128 (274)
Q Consensus        89 ~--~~v~~~~~~~~~~~~li~a~G~~~~~~---~~~--------------------~~~~~~~~~---------------  128 (274)
                      .  +.+.+.++.++.||+|++|+|+.+..+   +..                    .+.+..+..               
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~  161 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC  161 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred             ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence            4  488899999999999999999874432   210                    112222211               


Q ss_pred             Cc----hhhhHHHHhhhhCCCCeEEEEeCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC
Q 023975          129 GP----TGVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  202 (274)
Q Consensus       129 g~----~~~e~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  202 (274)
                      +.    .+++++..+.......+++++...+.+..  .+++.+.+.+.+.+++.|++++.++.+..++.+.+...+.+++
T Consensus       162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~  241 (401)
T 3vrd_B          162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSF  241 (401)
T ss_dssp             TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETT
T ss_pred             ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCC
Confidence            11    23455555555556789999988776532  2333344444555678899999999999998888888899999


Q ss_pred             CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccC-CCCCC
Q 023975          203 GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITD-IRVSA  266 (274)
Q Consensus       203 g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~-~~~~~  266 (274)
                      |+++++|.+++++|..|+ .++...++   .+++|++.||++ ++++++|||||+|||++ .|.++
T Consensus       242 g~~i~~D~vi~~~g~~~~-~~~~~~gl---~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk  303 (401)
T 3vrd_B          242 GETFKAAVINLIPPQRAG-KIAQSASL---TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPK  303 (401)
T ss_dssp             SCEEECSEEEECCCEEEC-HHHHHTTC---CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCB
T ss_pred             CcEEEeeEEEEecCcCCc-hhHhhccc---cccCCCEEECCCcceecCCCCEEEecccccCCCCCc
Confidence            999999999999999885 67777666   578899999987 77668999999999986 34443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.97  E-value=2e-31  Score=218.45  Aligned_cols=245  Identities=15%  Similarity=0.173  Sum_probs=170.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee---ecC-Cccc---cceee-ecccccc--ccEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MVE-PSFG---KRSVI-NHTDYLV--NGRIV   80 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~---~~~-~~~~---~~~~~-~~~~~~~--~~~~~   80 (274)
                      +++||+|||||++|+++|+.|+ +|++|+|+|+.+.+|+.|.....   ... +.+.   ...+. ...+...  ++.+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS   83 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            4589999999999999999997 59999999999888766532100   000 0000   00000 0000111  23332


Q ss_pred             E-EeeEEEec--C--eEEeCCCeEEecCEEEEccCCC---CCCChhHH---------------------HHHHHccCCch
Q 023975           81 A-SPAINITE--N--EVLTAEGRRVVYDYLVIATGHK---DPVPKTRT---------------------ERLNQYQAGPT  131 (274)
Q Consensus        81 ~-~~~~~~~~--~--~v~~~~~~~~~~~~li~a~G~~---~~~~~~~~---------------------~~~~~~~~g~~  131 (274)
                      . ..+..++.  .  .+.++++..+.||++|+|+|..   |..|+++.                     +++..+++|.+
T Consensus        84 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~  163 (335)
T 2zbw_A           84 LGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGGDS  163 (335)
T ss_dssp             ESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSSHH
T ss_pred             eCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCCHH
Confidence            2 22333322  1  4666677789999999999983   43322110                     11112334889


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC---CC--cEE
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TG--DTI  206 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~~  206 (274)
                      ++|+|..+.  ..+.+++++.+.+.+.+  .+...+.+.+.+++.||+++.++.+.+++.+++...+.+.   +|  +++
T Consensus       164 g~e~a~~l~--~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i  239 (335)
T 2zbw_A          164 AVDWALNLL--DTARRITLIHRRPQFRA--HEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELAL  239 (335)
T ss_dssp             HHHHHHHTT--TTSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEE
T ss_pred             HHHHHHHHH--hhCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEE
Confidence            999999998  56889999999887654  3456778888888899999999999999875443345554   66  579


Q ss_pred             eecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       207 ~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++|.||+|+|+.|+.+++...++.  ++ +|++.||+++++ +.|+||++|||+..+.
T Consensus       240 ~~D~vi~a~G~~p~~~~l~~~~~~--~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~  293 (335)
T 2zbw_A          240 EVDAVLILAGYITKLGPLANWGLA--LE-KNKIKVDTTMAT-SIPGVYACGDIVTYPG  293 (335)
T ss_dssp             ECSEEEECCCEEEECGGGGGSCCC--EE-TTEEECCTTCBC-SSTTEEECSTTEECTT
T ss_pred             ecCEEEEeecCCCCchHhhhccee--cc-CCeeeeCCCCCC-CCCCEEEeccccccCc
Confidence            999999999999988888776653  44 789999999998 8999999999997653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.97  E-value=1.1e-31  Score=219.04  Aligned_cols=239  Identities=17%  Similarity=0.205  Sum_probs=164.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecC-Cccc----cceeee-ccccc--cccEEEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFG----KRSVIN-HTDYL--VNGRIVAS   82 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~-~~~~----~~~~~~-~~~~~--~~~~~~~~   82 (274)
                      .++||+|||||++|+++|..|+ .|++|+|+|+. .+|+.+........ +.+.    ...+.. ..+..  .++++...
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~   85 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMD   85 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence            3589999999999999999997 49999999998 45554432211100 0110    000000 00111  13455544


Q ss_pred             eeEEEec-------CeEEeCCCeEEecCEEEEccCCCCCCChhHH---------------H-------HHHHccCCchhh
Q 023975           83 PAINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT---------------E-------RLNQYQAGPTGV  133 (274)
Q Consensus        83 ~~~~~~~-------~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~---------------~-------~~~~~~~g~~~~  133 (274)
                      .+..++.       ..+.+.++..+.||++|+|+|..|..|+.+.               .       ++..+++|.+++
T Consensus        86 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~  165 (325)
T 2q7v_A           86 EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAV  165 (325)
T ss_dssp             CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHH
T ss_pred             eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHH
Confidence            4444432       1455667778999999999998754443111               0       111134589999


Q ss_pred             hHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHH-hCCcEEEcCceeeeeccCCCceeEECC---CCc--EEe
Q 023975          134 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TIN  207 (274)
Q Consensus       134 e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~  207 (274)
                      |+|..+.  ..+.+++++.+.+.+..  .    ..+.+.+. +.||+++++++++++..++....+.+.   +|+  +++
T Consensus       166 e~A~~l~--~~g~~Vtlv~~~~~~~~--~----~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~  237 (325)
T 2q7v_A          166 EEGMFLT--KFADEVTVIHRRDTLRA--N----KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELA  237 (325)
T ss_dssp             HHHHHHT--TTCSEEEEECSSSSCCS--C----HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHHH--hcCCEEEEEeCCCcCCc--c----hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEE
Confidence            9999998  56899999998876532  2    23444454 469999999999999865433345543   564  789


Q ss_pred             ecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       208 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      +|.||+|+|+.|+.+++... +  .++++|++.||+++++ +.|+||++|||++.+
T Consensus       238 ~D~vi~a~G~~p~~~~l~~~-~--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  289 (325)
T 2q7v_A          238 TDGVFIFIGHVPNTAFVKDT-V--SLRDDGYVDVRDEIYT-NIPMLFAAGDVSDYI  289 (325)
T ss_dssp             CSEEEECSCEEESCGGGTTT-S--CBCTTSCBCCBTTTBC-SSTTEEECSTTTCSS
T ss_pred             cCEEEEccCCCCChHHHhhh-c--ccCCCccEecCCCCcc-CCCCEEEeecccCcc
Confidence            99999999999998888764 3  5678899999999998 899999999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=8.5e-31  Score=222.50  Aligned_cols=244  Identities=22%  Similarity=0.335  Sum_probs=174.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCceeeccceeeecCCcc-c-cceeeeccccc--cccEEEE-EeeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWASLRAMVEPSF-G-KRSVINHTDYL--VNGRIVA-SPAI   85 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~-~~~~   85 (274)
                      +||+|||||++|+++|..|+ .  |++|+|+|+++.+++....+........ . ........+++  .++++.. ..+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            48999999999999999997 3  8999999999877643322211111111 0 11111111111  1455533 3333


Q ss_pred             EEe--cCeEEeC---CCe--EEecCEEEEccCCCCCCChhH------------HH---HHH------------HccCCch
Q 023975           86 NIT--ENEVLTA---EGR--RVVYDYLVIATGHKDPVPKTR------------TE---RLN------------QYQAGPT  131 (274)
Q Consensus        86 ~~~--~~~v~~~---~~~--~~~~~~li~a~G~~~~~~~~~------------~~---~~~------------~~~~g~~  131 (274)
                      .++  .+.+.+.   +|.  ++.||++|+|||+.|..|+.+            ..   .+.            .+++|.+
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~  160 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYI  160 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHH
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHH
Confidence            443  3455553   254  489999999999875544311            11   111            1344889


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecE
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC  210 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~  210 (274)
                      ++|+|..+.  ..+.+++++.+.+.+++ .+++.+.+.+.+.+++.|+++++++.|++++.++....+.+ +++++++|.
T Consensus       161 g~e~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~  237 (447)
T 1nhp_A          161 GIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADL  237 (447)
T ss_dssp             HHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSE
T ss_pred             HHHHHHHHH--HCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCE
Confidence            999999988  56889999999988887 57888999999999999999999999999986633324555 556899999


Q ss_pred             EEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          211 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       211 vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ||+|+|..|+.+++... +  .++.+|++.||++++| +.|+||++|||+..+.
T Consensus       238 vi~a~G~~p~~~~~~~~-~--~~~~~G~i~Vd~~~~t-~~~~Iya~GD~~~~~~  287 (447)
T 1nhp_A          238 VVVAVGVRPNTAWLKGT-L--ELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKY  287 (447)
T ss_dssp             EEECSCEEESCGGGTTT-S--CBCTTSCBCCCTTCBC-SSTTEEECGGGSCEEE
T ss_pred             EEECcCCCCChHHHHhh-h--hhcCCCcEEECccccC-CCCCEEEeeeEEEeec
Confidence            99999999998887654 4  5677899999999999 8999999999997543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.97  E-value=8.6e-30  Score=214.11  Aligned_cols=246  Identities=18%  Similarity=0.201  Sum_probs=174.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeEEE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI   87 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   87 (274)
                      +||+|||||++|+++|..|+    +|++|+|+|+++.+++.+.............+......+.+  .+++++...+..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            68999999999999999985    48999999999987654332221111111122222222222  2567776666666


Q ss_pred             ecC--eEEeCCCe----EEecCEEEEccCCCCCCC---hhHH-----------HHHH----H-------ccCC-------
Q 023975           88 TEN--EVLTAEGR----RVVYDYLVIATGHKDPVP---KTRT-----------ERLN----Q-------YQAG-------  129 (274)
Q Consensus        88 ~~~--~v~~~~~~----~~~~~~li~a~G~~~~~~---~~~~-----------~~~~----~-------~~~g-------  129 (274)
                      +..  .+.+.++.    ++.||++|+|+|..|..|   +...           ..+.    .       +++|       
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~  161 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN  161 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCS
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCC
Confidence            643  67776664    389999999999986543   3221           1111    1       1224       


Q ss_pred             ------------c------hhhhHHHHhhhh--CCC----CeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCce
Q 023975          130 ------------P------TGVELAGEIAVD--FPE----KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       130 ------------~------~~~e~a~~l~~~--~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                                  .      .++|++..+...  ..+    .+++++.+.+ +++..++.+.+.+.+.+++.||+++++++
T Consensus       162 ~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~  240 (409)
T 3h8l_A          162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFK  240 (409)
T ss_dssp             SCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred             ccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCc
Confidence                        1      356777554321  334    4899999888 66777788999999999999999999999


Q ss_pred             eeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          186 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       186 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      |++++.++    +++++|+++++|.||+++|+.|+ +++...+.++ .+++|++.||+.+++++.||||++|||++.+.+
T Consensus       241 v~~i~~~~----v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~  314 (409)
T 3h8l_A          241 IKEIREHE----IVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVP  314 (409)
T ss_dssp             EEEECSSE----EEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCS
T ss_pred             eEEECCCe----EEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCC
Confidence            99997542    77888999999999999999986 5666663333 467899999999999889999999999986544


Q ss_pred             C
Q 023975          266 A  266 (274)
Q Consensus       266 ~  266 (274)
                      +
T Consensus       315 ~  315 (409)
T 3h8l_A          315 K  315 (409)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.97  E-value=1.2e-30  Score=211.84  Aligned_cols=241  Identities=15%  Similarity=0.137  Sum_probs=163.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEE-EcCCCCceeeccceeeecC-Cccc----cceee-eccccc--cccEEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTL-IDPKEYFEITWASLRAMVE-PSFG----KRSVI-NHTDYL--VNGRIVA   81 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~v-ie~~~~~g~~~~~~~~~~~-~~~~----~~~~~-~~~~~~--~~~~~~~   81 (274)
                      .++||+|||||++|+++|+.|++ |++|+| +|| +.+|+.|........ +.+.    ...+. ...++.  .++++..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   81 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM   81 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE
Confidence            45899999999999999999984 999999 999 556655433221100 0100    00000 001111  1344444


Q ss_pred             EeeEEE-ec--CeEE--e-CCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhh
Q 023975           82 SPAINI-TE--NEVL--T-AEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGV  133 (274)
Q Consensus        82 ~~~~~~-~~--~~v~--~-~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~  133 (274)
                      ..+..+ +.  +.+.  . .++ .+.||++|+|+|..|..|..+.                      +.+..+++|.+++
T Consensus        82 ~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~  160 (315)
T 3r9u_A           82 VGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTAL  160 (315)
T ss_dssp             CCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHH
T ss_pred             EEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHH
Confidence            444444 33  2222  2 333 8999999999998755443211                      1112234488999


Q ss_pred             hHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc---eeEECCCCc--EEee
Q 023975          134 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINA  208 (274)
Q Consensus       134 e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~  208 (274)
                      |+|..+.  ..+.+++++.+.+.+..  .   ...+.+.+++.||++++++.+.++..+++.   +.+...+|+  ++++
T Consensus       161 e~a~~l~--~~g~~v~~~~~~~~~~~--~---~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~  233 (315)
T 3r9u_A          161 EEALYLA--NICSKIYLIHRRDEFRA--A---PSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNV  233 (315)
T ss_dssp             HHHHHHH--TTSSEEEEECSSSSCBS--C---HHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECC
T ss_pred             HHHHHHH--hhCCEEEEEEeCCCCCC--C---HHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeec
Confidence            9999998  56889999998877522  2   233445557889999999999999876543   233344775  7999


Q ss_pred             cEEEEcccCCCCchhhcc-cccc-cccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          209 DCHFLCTGKPVGSDWLKD-TILK-DSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       209 d~vv~a~G~~~~~~~~~~-~~~~-~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      |.||+|+|+.|+..++.. ..++ +.++++|++.||++++| +.|+||++|||++.
T Consensus       234 D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~~~~  288 (315)
T 3r9u_A          234 PGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDLRKD  288 (315)
T ss_dssp             SCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGGBTT
T ss_pred             CeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecccCC
Confidence            999999999999888876 2232 46778899999999999 89999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.97  E-value=1.7e-30  Score=213.08  Aligned_cols=240  Identities=15%  Similarity=0.147  Sum_probs=165.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC----CceeeccceeeecC-Ccccc----cee-eeccccc--ccc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE----YFEITWASLRAMVE-PSFGK----RSV-INHTDYL--VNG   77 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~----~~g~~~~~~~~~~~-~~~~~----~~~-~~~~~~~--~~~   77 (274)
                      .+++||+|||||++|+++|+.|+ +|++|+|+|+.+    .+|+.|........ +.+..    ..+ ....+..  .++
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   99 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGT   99 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999998 599999999954    55655443221110 01100    000 0000111  145


Q ss_pred             EEEEEeeEEEecC----eEEe---CCCeEEecCEEEEccCCCCCCChhHHHH------------------------HHHc
Q 023975           78 RIVASPAINITEN----EVLT---AEGRRVVYDYLVIATGHKDPVPKTRTER------------------------LNQY  126 (274)
Q Consensus        78 ~~~~~~~~~~~~~----~v~~---~~~~~~~~~~li~a~G~~~~~~~~~~~~------------------------~~~~  126 (274)
                      ++....+..++..    .+.+   .++..+.||++|+|+|..+..|.++...                        +..+
T Consensus       100 ~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  179 (338)
T 3itj_A          100 EIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI  179 (338)
T ss_dssp             EEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEE
Confidence            5554444455432    3333   3667899999999999875544322111                        1123


Q ss_pred             cCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhC-CcEEEcCceeeeeccCCCce-eEECCC--
Q 023975          127 QAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTST--  202 (274)
Q Consensus       127 ~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~~--  202 (274)
                      ++|.+++|+|..+.  ..+.+++++.+.+.+.+      ...+.+.+.+. ||++++++.+.+++.+++.+ .+++.+  
T Consensus       180 G~G~~g~e~a~~l~--~~g~~v~~v~~~~~~~~------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~  251 (338)
T 3itj_A          180 GGGDSACEEAQFLT--KYGSKVFMLVRKDHLRA------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTK  251 (338)
T ss_dssp             CSSHHHHHHHHHHT--TTSSEEEEECSSSSCCS------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETT
T ss_pred             CCCHHHHHHHHHHH--hcCCEEEEEEcCCccCC------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECC
Confidence            34889999999998  56889999999887643      34555666554 99999999999998776543 355544  


Q ss_pred             ---CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEe-CCCccccCCCCeEEeccccCC
Q 023975          203 ---GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       203 ---g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                         ++++++|.||+|+|+.|+..++.. ++  .++++|++.+ |..+++ +.|+||++|||++.
T Consensus       252 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l--~~~~~G~i~v~~~~~~t-~~~~vya~GD~~~~  311 (338)
T 3itj_A          252 KNEETDLPVSGLFYAIGHTPATKIVAG-QV--DTDEAGYIKTVPGSSLT-SVPGFFAAGDVQDS  311 (338)
T ss_dssp             TTEEEEEECSEEEECSCEEECCGGGBT-TB--CBCTTSCBCCCTTSSBC-SSTTEEECGGGGCS
T ss_pred             CCceEEEEeCEEEEEeCCCCChhHhhC-ce--EecCCCcEEEcCccccc-CCCCEEEeeccCCC
Confidence               357999999999999999888876 44  6778999985 778888 89999999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.97  E-value=1.9e-30  Score=211.24  Aligned_cols=241  Identities=15%  Similarity=0.156  Sum_probs=168.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeec-CCccc----cceeee-ccccc--cccEEEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMV-EPSFG----KRSVIN-HTDYL--VNGRIVASP   83 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~-~~~~~----~~~~~~-~~~~~--~~~~~~~~~   83 (274)
                      ++||+|||||++|+++|+.|++ |++|+|+|+. .+|+.+....... .+.+.    ...... .....  .++++....
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence            4799999999999999999975 9999999975 4444332211100 00110    000000 00111  134555444


Q ss_pred             eEEEec--CeEE-eCCCeEEecCEEEEccCCCCCCChhHHHH----------------------HHHccCCchhhhHHHH
Q 023975           84 AINITE--NEVL-TAEGRRVVYDYLVIATGHKDPVPKTRTER----------------------LNQYQAGPTGVELAGE  138 (274)
Q Consensus        84 ~~~~~~--~~v~-~~~~~~~~~~~li~a~G~~~~~~~~~~~~----------------------~~~~~~g~~~~e~a~~  138 (274)
                      +..++.  +.+. +.++..+.||++++|+|..|..|+++...                      +..+++|.+++|+|..
T Consensus        84 v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~  163 (320)
T 1trb_A           84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALY  163 (320)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHH
Confidence            444443  2222 55677899999999999887665543221                      1113448899999999


Q ss_pred             hhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC----C--cEEeecEE
Q 023975          139 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST----G--DTINADCH  211 (274)
Q Consensus       139 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~----g--~~~~~d~v  211 (274)
                      +.  ..+.+++++.+.+.+.  ..+.+.+.+.+.+++.||++++++++.+++.+++.+ .+++.+    |  +++++|.|
T Consensus       164 l~--~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~v  239 (320)
T 1trb_A          164 LS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGL  239 (320)
T ss_dssp             HT--TTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEE
T ss_pred             HH--hcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEE
Confidence            98  5688999999887653  255677788888899999999999999998766443 355433    4  57999999


Q ss_pred             EEcccCCCCchhhcccccccccCCCCcEEeCCCc-----cccCCCCeEEeccccCCC
Q 023975          212 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-----RVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       212 v~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-----~~~~~~~i~~~Gd~~~~~  263 (274)
                      |+|+|+.|+.+++. .++  .++ +|++.+|+.+     ++ +.|+||++|||++.+
T Consensus       240 v~a~G~~p~~~~~~-~~l--~~~-~G~i~vd~~~~~~~~~t-~~~~vya~GD~~~~~  291 (320)
T 1trb_A          240 FVAIGHSPNTAIFE-GQL--ELE-NGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHI  291 (320)
T ss_dssp             EECSCEEESCGGGT-TTS--CEE-TTEECCCCSSSSCTTBC-SSTTEEECGGGGCSS
T ss_pred             EEEeCCCCChHHhc-ccc--ccc-CceEEECCCcccccccC-CCCCEEEcccccCCc
Confidence            99999999988876 344  456 8999999986     66 899999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.97  E-value=1.5e-30  Score=211.82  Aligned_cols=239  Identities=19%  Similarity=0.207  Sum_probs=163.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec-CCcc---ccceeee-ccccc--cccEEEEEe
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSF---GKRSVIN-HTDYL--VNGRIVASP   83 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~-~~~~---~~~~~~~-~~~~~--~~~~~~~~~   83 (274)
                      +++||+|||||++|+++|+.|+ .|++|+|+|+. .+|+.+....... .+.+   ....... ..+..  .++++....
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   93 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVE   93 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEee
Confidence            3589999999999999999997 49999999995 4444332211100 0000   0000000 00001  133443333


Q ss_pred             eEEEe--cC--eEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhhHHH
Q 023975           84 AINIT--EN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVELAG  137 (274)
Q Consensus        84 ~~~~~--~~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e~a~  137 (274)
                      +..++  .+  .+.+ ++..+.||++|+|+|..|..|+++.                      +.+..+++|.+++|+|.
T Consensus        94 v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~  172 (319)
T 3cty_A           94 VRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAI  172 (319)
T ss_dssp             EEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHH
T ss_pred             EEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHH
Confidence            33333  23  3555 4567999999999998755443211                      01112345889999999


Q ss_pred             HhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECC---CCc--EEeecEE
Q 023975          138 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTS---TGD--TINADCH  211 (274)
Q Consensus       138 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~---~g~--~~~~d~v  211 (274)
                      .+.  ..+.+++++.+.+.+..      ...+.+.+++.||+++++++++++..+++. ..+.+.   +|+  ++++|.|
T Consensus       173 ~l~--~~g~~V~~i~~~~~~~~------~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~v  244 (319)
T 3cty_A          173 SMS--EYVKNVTIIEYMPKYMC------ENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGV  244 (319)
T ss_dssp             HHT--TTBSEEEEECSSSSCCS------CHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEE
T ss_pred             HHH--hhCCcEEEEEcCCccCC------CHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEE
Confidence            998  56889999998776532      234566677899999999999999876542 244443   564  6999999


Q ss_pred             EEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          212 FLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       212 v~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      |+|+|+.|+.+++...++  .++++|++.||+++++ +.|+||++|||++.+
T Consensus       245 i~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~  293 (319)
T 3cty_A          245 FIYVGLIPQTSFLKDSGV--KLDERGYIVVDSRQRT-SVPGVYAAGDVTSGN  293 (319)
T ss_dssp             EECCCEEECCGGGTTSCC--CBCTTSCBCCCTTCBC-SSTTEEECSTTBTTC
T ss_pred             EEeeCCccChHHHhhccc--cccCCccEeCCCCCcc-CCCCEEEeecccCcc
Confidence            999999999998876655  5678899999999998 899999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.97  E-value=3.9e-30  Score=212.78  Aligned_cols=245  Identities=20%  Similarity=0.209  Sum_probs=170.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee---ec-CCcccc---ceee-eccccc--cccEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MV-EPSFGK---RSVI-NHTDYL--VNGRIV   80 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~---~~-~~~~~~---~~~~-~~~~~~--~~~~~~   80 (274)
                      .++||+|||||++|+++|+.|+ +|++|+|||+.+.+|+.|.....   .. .+.+..   ..+. ...+..  .++.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   92 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVV   92 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence            3589999999999999999997 59999999999888766532110   00 000000   0000 000000  123332


Q ss_pred             E-EeeEEEe--cC---eEEeCCCeEEecCEEEEccCCC---CCCChhHH--H--------------------HHHHccCC
Q 023975           81 A-SPAINIT--EN---EVLTAEGRRVVYDYLVIATGHK---DPVPKTRT--E--------------------RLNQYQAG  129 (274)
Q Consensus        81 ~-~~~~~~~--~~---~v~~~~~~~~~~~~li~a~G~~---~~~~~~~~--~--------------------~~~~~~~g  129 (274)
                      . ..+..++  .+   .+.+.++..+.||++|+|+|..   |..++++.  .                    .+..+++|
T Consensus        93 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~G  172 (360)
T 3ab1_A           93 LNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGG  172 (360)
T ss_dssp             CSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECSS
T ss_pred             cCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECCC
Confidence            2 2233333  22   5677778789999999999983   44433222  1                    01112348


Q ss_pred             chhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC--CCC--c
Q 023975          130 PTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--STG--D  204 (274)
Q Consensus       130 ~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--~~g--~  204 (274)
                      .+++|+|..+.  ..+.+++++.+.+.+.+.  +.+.+.+.+.+++.||+++.++++.++..+++.+ .+.+  .+|  +
T Consensus       173 ~~g~e~A~~l~--~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~  248 (360)
T 3ab1_A          173 DSALDWTVGLI--KNAASVTLVHRGHEFQGH--GKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKW  248 (360)
T ss_dssp             HHHHHHHHHTT--TTSSEEEEECSSSSCSSC--SHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEE
T ss_pred             HHHHHHHHHHH--hcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeE
Confidence            89999999998  568899999998776542  3466777788888999999999999998765533 4444  367  5


Q ss_pred             EEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          205 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       205 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++++|.||+|+|+.|+.+++...++  .++ +|++.||++++| +.|+||++|||+..+.
T Consensus       249 ~i~~D~vi~a~G~~p~~~~l~~~~~--~~~-~g~i~vd~~~~t-~~~~vya~GD~~~~~~  304 (360)
T 3ab1_A          249 TVEADRLLILIGFKSNLGPLARWDL--ELY-ENALVVDSHMKT-SVDGLYAAGDIAYYPG  304 (360)
T ss_dssp             EEECSEEEECCCBCCSCGGGGGSSC--CEE-TTEEECCTTSBC-SSTTEEECSTTEECTT
T ss_pred             EEeCCEEEECCCCCCCHHHHHhhcc--ccc-cCeeeecCCCcC-CCCCEEEecCccCCCC
Confidence            7999999999999999888877665  344 789999999998 8999999999997653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.97  E-value=3.1e-30  Score=209.18  Aligned_cols=240  Identities=18%  Similarity=0.184  Sum_probs=163.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCceeeccceeeec-CCcc----ccceeee-ccccc--cccEEEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAMV-EPSF----GKRSVIN-HTDYL--VNGRIVAS   82 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~g~~~~~~~~~~-~~~~----~~~~~~~-~~~~~--~~~~~~~~   82 (274)
                      ++||+|||||++|+++|+.|+ .|+ +|+|+|+. .+|+.+....... .+.+    ....+.. ..+..  .++++...
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~   79 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMT   79 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEE
Confidence            379999999999999999997 599 99999996 4444332211100 0000    0000000 00101  13444433


Q ss_pred             eeEEEe--cC--eEEeCCCeEEecCEEEEccCCCCCCChhHHHH----------------------HHHccCCchhhhHH
Q 023975           83 PAINIT--EN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER----------------------LNQYQAGPTGVELA  136 (274)
Q Consensus        83 ~~~~~~--~~--~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~----------------------~~~~~~g~~~~e~a  136 (274)
                      .+..++  .+  .+.+.++..+.+|++|+|+|..|..|..+...                      +..+++|.+++|+|
T Consensus        80 ~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A  159 (311)
T 2q0l_A           80 AVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEA  159 (311)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHH
T ss_pred             EEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHH
Confidence            333333  33  46567778899999999999876554422111                      11134488999999


Q ss_pred             HHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHH-hCCcEEEcCceeeeeccCCCce-eEECC---CCc--EEeec
Q 023975          137 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TINAD  209 (274)
Q Consensus       137 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~~d  209 (274)
                      ..+.  ..+.+++++.+.+.+.  .+    ..+.+.+. +.||++++++.+.++..+++.+ .+.+.   +|+  ++++|
T Consensus       160 ~~l~--~~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D  231 (311)
T 2q0l_A          160 IYLA--NICKKVYLIHRRDGFR--CA----PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVP  231 (311)
T ss_dssp             HHHH--TTSSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECS
T ss_pred             HHHH--hcCCEEEEEeeCCccC--CC----HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecC
Confidence            9998  5688999999887652  22    23445554 4799999999999998664432 45544   565  78999


Q ss_pred             EEEEcccCCCCchhhcccc--cccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          210 CHFLCTGKPVGSDWLKDTI--LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      .||+|+|+.|+.+++...+  .++.++++|++.||++++| +.|+||++|||++.
T Consensus       232 ~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~  285 (311)
T 2q0l_A          232 GFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKT-NVQGLFAAGDIRIF  285 (311)
T ss_dssp             EEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECSTTBTT
T ss_pred             EEEEEecCccChhhhhcccccceeEeccCCCEEeCCcccc-CCCCeEEcccccCc
Confidence            9999999999988887654  1235678899999999998 89999999999986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.97  E-value=3.8e-30  Score=210.40  Aligned_cols=238  Identities=17%  Similarity=0.210  Sum_probs=166.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee----ecCCcccc---ceee-eccccc--cccEEE-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----MVEPSFGK---RSVI-NHTDYL--VNGRIV-   80 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~----~~~~~~~~---~~~~-~~~~~~--~~~~~~-   80 (274)
                      ++||+|||||++|+++|+.|+ +|++|+|+|+.+.+|+.|.....    ...+.+..   ..+. ...+..  .++++. 
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL   86 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence            479999999999999999997 59999999999998866632100    00000000   0000 000111  133443 


Q ss_pred             EEeeEEEe--cC---eEEeCCCeEEecCEEEEccCC---CCCCChh---HH------------------HHHHHccCCch
Q 023975           81 ASPAINIT--EN---EVLTAEGRRVVYDYLVIATGH---KDPVPKT---RT------------------ERLNQYQAGPT  131 (274)
Q Consensus        81 ~~~~~~~~--~~---~v~~~~~~~~~~~~li~a~G~---~~~~~~~---~~------------------~~~~~~~~g~~  131 (274)
                      ...+..++  .+   .+.++++. +.||++|+|+|.   .|..|..   ..                  +.+..+++|.+
T Consensus        87 ~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~v~vvG~g~~  165 (332)
T 3lzw_A           87 EQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDS  165 (332)
T ss_dssp             SCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEESSCSCGGGGBTCEEEEECSSHH
T ss_pred             cCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEEecCCHHHcCCCEEEEECCCHh
Confidence            23333333  22   56666664 999999999999   5544332   11                  11122334889


Q ss_pred             hhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC-----CcEE
Q 023975          132 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-----GDTI  206 (274)
Q Consensus       132 ~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-----g~~~  206 (274)
                      ++|++..+.  ..+.+++++.+.+.+.+.      ....+.+++.||+++.++.+.+++.+++...+.+.+     ++++
T Consensus       166 ~~e~a~~l~--~~~~~v~~~~~~~~~~~~------~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~  237 (332)
T 3lzw_A          166 AVDWALMLE--PIAKEVSIIHRRDKFRAH------EHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEIL  237 (332)
T ss_dssp             HHHHHHHHT--TTBSEEEEECSSSSCSSC------HHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEE
T ss_pred             HHHHHHHHH--hhCCeEEEEEecCcCCcc------HHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEE
Confidence            999999998  568899999998875431      223455788999999999999998776655666554     3579


Q ss_pred             eecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCC
Q 023975          207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       207 ~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ++|.||+|+|+.|+.+++...++.  . ++|++.||++++| +.|+||++|||+..+
T Consensus       238 ~~D~vv~a~G~~p~~~~~~~~~~~--~-~~g~i~vd~~~~t-~~~~vya~GD~~~~~  290 (332)
T 3lzw_A          238 EIDDLIVNYGFVSSLGPIKNWGLD--I-EKNSIVVKSTMET-NIEGFFAAGDICTYE  290 (332)
T ss_dssp             ECSEEEECCCEECCCGGGGGSSCC--E-ETTEEECCTTSBC-SSTTEEECGGGEECT
T ss_pred             ECCEEEEeeccCCCchHHhhcCcc--c-cCCeEEeCCCCce-ecCCEEEccceecCC
Confidence            999999999999999988877763  4 6899999999998 899999999999654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.96  E-value=9.8e-30  Score=223.25  Aligned_cols=247  Identities=17%  Similarity=0.195  Sum_probs=169.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-C-------Cceeeccceee-----------------------e-
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-E-------YFEITWASLRA-----------------------M-   57 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~-~-------~~g~~~~~~~~-----------------------~-   57 (274)
                      ..++||+||||||||+++|..|+ .|++|+|+|+. +       .+|+.+.....                       . 
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~  184 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWS  184 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCcc
Confidence            34689999999999999999997 59999999973 2       24432211000                       0 


Q ss_pred             cCC---ccccceeeec------------cc-c-ccccEEEEEeeEEEecCeE--EeCCC--eEEecCEEEEccCCCCCCC
Q 023975           58 VEP---SFGKRSVINH------------TD-Y-LVNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        58 ~~~---~~~~~~~~~~------------~~-~-~~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~li~a~G~~~~~~  116 (274)
                      ...   .........+            .. + ..+++++......++...+  ...+|  .++.||++|+|||+.|..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~p  264 (598)
T 2x8g_A          185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP  264 (598)
T ss_dssp             CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECCC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCCC
Confidence            000   0000000000            00 0 1245555555555555533  33455  4689999999999987665


Q ss_pred             hhHHH--------HHH----------HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCc
Q 023975          117 KTRTE--------RLN----------QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKV  178 (274)
Q Consensus       117 ~~~~~--------~~~----------~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv  178 (274)
                      +++..        .+.          .+++|.+|+|+|..+.  ..+.+|+++.+. .+++.+++.+.+.+.+.+++.||
T Consensus       265 ~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv  341 (598)
T 2x8g_A          265 EIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLA--SLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGV  341 (598)
T ss_dssp             SSTTHHHHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCCcccceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHH--HcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCC
Confidence            53321        111          2344899999999998  568899999987 66777888899999999999999


Q ss_pred             EEEcCceeeeeccC------C---CceeE--ECCCCcEEe--ecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCc
Q 023975          179 DVKLGERVNLDSVS------E---GSDTY--LTSTGDTIN--ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL  245 (274)
Q Consensus       179 ~i~~~~~v~~i~~~------~---~~~~v--~~~~g~~~~--~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  245 (274)
                      ++++++.+.+++..      +   +.+.+  .+.+|+++.  +|.||+|+|..|+.+++.....++.++++|+|.||+++
T Consensus       342 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~  421 (598)
T 2x8g_A          342 KFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDE  421 (598)
T ss_dssp             EEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTS
T ss_pred             EEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCC
Confidence            99999888777421      1   33333  346776555  99999999999998876433344467788999999999


Q ss_pred             cccCCCCeEEeccccC
Q 023975          246 RVKGQKNIFAIGDITD  261 (274)
Q Consensus       246 ~~~~~~~i~~~Gd~~~  261 (274)
                      +| +.|+|||+|||+.
T Consensus       422 ~t-s~~~VyA~GD~~~  436 (598)
T 2x8g_A          422 QT-TVSNVYAIGDINA  436 (598)
T ss_dssp             BC-SSTTEEECGGGBT
T ss_pred             cC-CCCCEEEEeeecC
Confidence            98 8999999999953

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.96  E-value=3.2e-29  Score=203.13  Aligned_cols=238  Identities=21%  Similarity=0.243  Sum_probs=163.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeee---cCCcc-ccceee-eccccc--cccEEEEE-e
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAM---VEPSF-GKRSVI-NHTDYL--VNGRIVAS-P   83 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~---~~~~~-~~~~~~-~~~~~~--~~~~~~~~-~   83 (274)
                      ++||+|||||++|+++|..|++ |++|+|+|+.  +|+.|......   ..... ....+. ...++.  .++++... .
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQS   78 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCE
Confidence            3799999999999999999985 9999999864  44443321111   00000 000000 001111  13455444 4


Q ss_pred             eEEEec-------CeEEeCCCeEEecCEEEEccCCCCCCChhHH----------------------HHHHHccCCchhhh
Q 023975           84 AINITE-------NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------------------ERLNQYQAGPTGVE  134 (274)
Q Consensus        84 ~~~~~~-------~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~----------------------~~~~~~~~g~~~~e  134 (274)
                      +..++.       ..+.++++..+.||++|+|+|..|..|+.+.                      +++..+++|.+++|
T Consensus        79 v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e  158 (310)
T 1fl2_A           79 ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVE  158 (310)
T ss_dssp             EEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHH
T ss_pred             EEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHH
Confidence            444432       1566777878999999999998754332111                      01112345899999


Q ss_pred             HHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECC---CCc--EEe
Q 023975          135 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TIN  207 (274)
Q Consensus       135 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~~  207 (274)
                      +|..|.  ..+.+++++.+.+.+.  .+    ..+.+.+++ .||++++++.++++..+++.+ .+++.   +|+  +++
T Consensus       159 ~A~~l~--~~g~~Vtlv~~~~~~~--~~----~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~  230 (310)
T 1fl2_A          159 AAIDLA--GIVEHVTLLEFAPEMK--AD----QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIE  230 (310)
T ss_dssp             HHHHHH--TTBSEEEEECSSSSCC--SC----HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEE
T ss_pred             HHHHHH--HhCCEEEEEEeCcccC--cc----HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEE
Confidence            999998  5688999999887652  22    345666776 699999999999998665543 45543   353  789


Q ss_pred             ecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          208 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       208 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +|.||+|+|+.|+.+++...   +.++++|++.||++++| +.|+||++|||++.+.
T Consensus       231 ~D~vi~a~G~~p~~~~l~~~---l~~~~~g~i~vd~~~~t-~~~~vya~GD~~~~~~  283 (310)
T 1fl2_A          231 LAGIFVQIGLLPNTNWLEGA---VERNRMGEIIIDAKCET-NVKGVFAAGDCTTVPY  283 (310)
T ss_dssp             CSEEEECSCEEESCGGGTTT---SCBCTTSCBCCCTTCBC-SSTTEEECSTTBSCSS
T ss_pred             cCEEEEeeCCccCchHHhcc---ccccCCCcEEcCCCCcc-CCCCEEEeecccCCcc
Confidence            99999999999998888652   35678899999999997 8999999999998763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.96  E-value=3.9e-29  Score=204.77  Aligned_cols=240  Identities=17%  Similarity=0.208  Sum_probs=162.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec-CCccc----cceeee-ccccc--cccEEEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFG----KRSVIN-HTDYL--VNGRIVA   81 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~-~~~~~----~~~~~~-~~~~~--~~~~~~~   81 (274)
                      .+++||+|||||++|+++|+.|+ .|++|+|+|+. .+|+.+....... .+.+.    ...... ..++.  .++++..
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~   90 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRM   90 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEEC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            34689999999999999999997 49999999976 4454432211100 00010    000000 00111  1345544


Q ss_pred             EeeEEEec-C--eE-EeCCCeEEecCEEEEccCCCCCCChhHHHH----------------------HHHccCCchhhhH
Q 023975           82 SPAINITE-N--EV-LTAEGRRVVYDYLVIATGHKDPVPKTRTER----------------------LNQYQAGPTGVEL  135 (274)
Q Consensus        82 ~~~~~~~~-~--~v-~~~~~~~~~~~~li~a~G~~~~~~~~~~~~----------------------~~~~~~g~~~~e~  135 (274)
                      ..+..++. +  .+ .++++..+.||++|+|+|..|..|+++...                      +..+++|.+++|+
T Consensus        91 ~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~  170 (335)
T 2a87_A           91 EDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEE  170 (335)
T ss_dssp             CCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHH
T ss_pred             eeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHH
Confidence            44444432 2  46 677788899999999999876555432211                      1113348899999


Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHH-HHHHhCCcEEEcCceeeeeccCCCceeEECC---CC--cEEeec
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR-DWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TG--DTINAD  209 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g--~~~~~d  209 (274)
                      |..+.  ..+.+++++.+.+.+..  .    +.+. +.+++.||++++++.+.+++.+++...+.+.   +|  +++++|
T Consensus       171 a~~l~--~~g~~V~l~~~~~~~~~--~----~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D  242 (335)
T 2a87_A          171 ATFLT--RFARSVTLVHRRDEFRA--S----KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVT  242 (335)
T ss_dssp             HHHHT--TTCSEEEEECSSSSCSS--C----TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCS
T ss_pred             HHHHH--HhCCeEEEEEcCCcCCc--c----HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecC
Confidence            99998  56889999998876532  1    2233 3456789999999999999876543344443   34  579999


Q ss_pred             EEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCC
Q 023975          210 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       210 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~  263 (274)
                      .||+|+|+.|+.+++. .++  .++++|++.||++ +++ +.|+||++|||++.+
T Consensus       243 ~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t-~~~~iya~GD~~~~~  293 (335)
T 2a87_A          243 GVFVAIGHEPRSGLVR-EAI--DVDPDGYVLVQGRTTST-SLPGVFAAGDLVDRT  293 (335)
T ss_dssp             CEEECSCEEECCTTTB-TTB--CBCTTSCBCCSTTSSBC-SSTTEEECGGGTCCS
T ss_pred             EEEEccCCccChhHhh-ccc--ccCCCccEEeCCCCCcc-CCCCEEEeeecCCcc
Confidence            9999999999988876 333  5677899999986 566 899999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.96  E-value=3.3e-29  Score=212.05  Aligned_cols=247  Identities=21%  Similarity=0.201  Sum_probs=167.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   86 (274)
                      ++||+|||||++|+++|..|+    +|++|+|||+++.+.+.+....................+++  .+++++...+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~   83 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ   83 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence            479999999999999999996    48999999999876543321110001111111222222222  256777666666


Q ss_pred             Eec--CeEEeCCCeEEecCEEEEccCCCCCC---ChhH-----------HH---H----HHH---------ccCCchh--
Q 023975           87 ITE--NEVLTAEGRRVVYDYLVIATGHKDPV---PKTR-----------TE---R----LNQ---------YQAGPTG--  132 (274)
Q Consensus        87 ~~~--~~v~~~~~~~~~~~~li~a~G~~~~~---~~~~-----------~~---~----~~~---------~~~g~~~--  132 (274)
                      ++.  +.+.++++.++.||++|+|+|..+..   |+..           ..   .    +..         +++|..+  
T Consensus        84 id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~  163 (437)
T 3sx6_A           84 IDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASC  163 (437)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCC
T ss_pred             EEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCc
Confidence            764  37888888889999999999998543   2211           11   1    111         1223332  


Q ss_pred             ----hhHHHHhhhh--CCCC----e-EEEEeCCCccCCc---CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeE
Q 023975          133 ----VELAGEIAVD--FPEK----K-VTLVHKGSRLLEF---IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY  198 (274)
Q Consensus       133 ----~e~a~~l~~~--~~~~----~-v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v  198 (274)
                          +|+|..+...  ..+.    + ++++.+.+.+.+.   ..+.....+.+.+++.||++++++.|++++.+  .+.+
T Consensus       164 ~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~--~v~~  241 (437)
T 3sx6_A          164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDN--KMYV  241 (437)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETT--EEEE
T ss_pred             CcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECC--eEEE
Confidence                7777544321  2233    3 9999998876321   11347788889999999999999999999743  3333


Q ss_pred             E--CCC-----CcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          199 L--TST-----GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       199 ~--~~~-----g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .  ..+     ++++++|.+++++|+.++..+....++   .+++|++.||++++++++|+||++|||+..+.
T Consensus       242 ~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl---~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~  311 (437)
T 3sx6_A          242 TQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL---CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPP  311 (437)
T ss_dssp             EEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT---BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCC
T ss_pred             EecccCCccccceEEEEeEEEEcCCCcCchhhhccccc---cCCCCcEEeChhccCCCCCCEEEEEEEeccCC
Confidence            2  233     457999999999998886554443454   57889999999999988999999999998764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.96  E-value=4.8e-29  Score=206.89  Aligned_cols=248  Identities=17%  Similarity=0.237  Sum_probs=166.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCceeeccceee---ecCCcccc-----------------------
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRA---MVEPSFGK-----------------------   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~g~~~~~~~~---~~~~~~~~-----------------------   64 (274)
                      ++||+|||||++|+++|+.|+ .|+ +|+|||+++ +|+.|.....   ...+.+..                       
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   82 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE   82 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence            479999999999999999997 498 999999988 6654422110   00000000                       


Q ss_pred             -----ceeeec-cccc--cccEEEEE-eeEEEecC----eEEeCCCeEEecCEEEEccCCC--CCCCh---h--------
Q 023975           65 -----RSVINH-TDYL--VNGRIVAS-PAINITEN----EVLTAEGRRVVYDYLVIATGHK--DPVPK---T--------  118 (274)
Q Consensus        65 -----~~~~~~-~~~~--~~~~~~~~-~~~~~~~~----~v~~~~~~~~~~~~li~a~G~~--~~~~~---~--------  118 (274)
                           ..+..+ ..+.  .++++... .+..++..    .+.+.++ .+.||++|+|+|..  |.+|+   .        
T Consensus        83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~p~ip~~~~~~~~~~~~~  161 (369)
T 3d1c_A           83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNFPKKPFKYGIHYSEIEDF  161 (369)
T ss_dssp             SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTSBCCCSSSCEEGGGCSCG
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCccCCCCCceechhhcCCh
Confidence                 000000 0011  13444433 23334322    4556555 68999999999986  44443   0        


Q ss_pred             ---HHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-------cCChhHHHHHHHHHHhCC-cEEEcCceee
Q 023975          119 ---RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------FIGPKAGDKTRDWLISKK-VDVKLGERVN  187 (274)
Q Consensus       119 ---~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g-v~i~~~~~v~  187 (274)
                         ..+.+..+++|.+++|+|..+.  ..+.+++++.+.+.+.+       ...+.+.+.+.+.+++.| |+++.++.|.
T Consensus       162 ~~~~~~~vvVvG~G~~g~e~a~~l~--~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~  239 (369)
T 3d1c_A          162 DNFNKGQYVVIGGNESGFDAAYQLA--KNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK  239 (369)
T ss_dssp             GGSCSSEEEEECCSHHHHHHHHHHH--HTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred             hhcCCCEEEEECCCcCHHHHHHHHH--hcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence               0112333455899999999998  45889999999877653       134556678888888897 9999999999


Q ss_pred             eeccCCCceeEECCCCcEEe-ecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          188 LDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       188 ~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +++.+++...+.+.+|+++. +|.||+|+|+.|+.+++...++  . +++|++.||+.++.++.|+||++|||+..+...
T Consensus       240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~--~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~  316 (369)
T 3d1c_A          240 DIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF--V-TTNQDIKLTTHDESTRYPNIFMIGATVENDNAK  316 (369)
T ss_dssp             EEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHS--C-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCC
T ss_pred             EEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhc--c-CCCCCEEechhhcccCCCCeEEeccccccCCee
Confidence            99755566678888887665 5999999999998866664443  3 678889999874444899999999999877654


Q ss_pred             C
Q 023975          267 S  267 (274)
Q Consensus       267 ~  267 (274)
                      .
T Consensus       317 ~  317 (369)
T 3d1c_A          317 L  317 (369)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.95  E-value=2e-28  Score=200.39  Aligned_cols=238  Identities=16%  Similarity=0.204  Sum_probs=160.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcC----CCCceeeccceeeec-CCcccc----ceee-eccccc--cccEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP----KEYFEITWASLRAMV-EPSFGK----RSVI-NHTDYL--VNGRI   79 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~----~~~~g~~~~~~~~~~-~~~~~~----~~~~-~~~~~~--~~~~~   79 (274)
                      ++||+|||||++|+++|+.|+ .|++|+|+|+    ....++.+....... .+.+..    ..+. ...+..  .++++
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~   87 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   87 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence            479999999999999999997 4999999999    444444332211100 001100    0000 000111  13455


Q ss_pred             EEEeeEEEec--C--eEEeCCCeEEecCEEEEccCCCCCCCh---hHH-------------HHH------------HHcc
Q 023975           80 VASPAINITE--N--EVLTAEGRRVVYDYLVIATGHKDPVPK---TRT-------------ERL------------NQYQ  127 (274)
Q Consensus        80 ~~~~~~~~~~--~--~v~~~~~~~~~~~~li~a~G~~~~~~~---~~~-------------~~~------------~~~~  127 (274)
                      ....+..++.  +  .+.+ ++..+.++++|+|+|..+..|+   ...             ...            ..++
T Consensus        88 ~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  166 (333)
T 1vdc_A           88 FTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIG  166 (333)
T ss_dssp             ECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEEC
T ss_pred             EEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEEC
Confidence            5444444442  2  4555 6778999999999998754332   111             011            1133


Q ss_pred             CCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHH-HHHHhCCcEEEcCceeeeeccCCC--ce-eEECC--
Q 023975          128 AGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR-DWLISKKVDVKLGERVNLDSVSEG--SD-TYLTS--  201 (274)
Q Consensus       128 ~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~~--  201 (274)
                      +|.+++|+|..+.  ..+.+++++.+.+.+..      .+.+. +.+++.||++++++.+.+++.+++  .+ .+.+.  
T Consensus       167 ~G~~g~e~A~~l~--~~g~~V~lv~~~~~~~~------~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~  238 (333)
T 1vdc_A          167 GGDSAMEEANFLT--KYGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV  238 (333)
T ss_dssp             CSHHHHHHHHHHT--TTSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET
T ss_pred             CChHHHHHHHHHH--hcCCeEEEEecCCcCCc------cHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEec
Confidence            4889999999998  56889999998876532      23333 445678999999999999987653  32 24443  


Q ss_pred             -CC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCC
Q 023975          202 -TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       202 -~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~  263 (274)
                       +|  +++++|.||+|+|+.|+.+++. .++  .++++|++.||++ ++| +.|+||++|||++.+
T Consensus       239 ~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l--~~~~~G~i~vd~~~~~t-~~~~vya~GD~~~~~  300 (333)
T 1vdc_A          239 VTGDVSDLKVSGLFFAIGHEPATKFLD-GGV--ELDSDGYVVTKPGTTQT-SVPGVFAAGDVQDKK  300 (333)
T ss_dssp             TTCCEEEEECSEEEECSCEEESCGGGT-TSS--CBCTTSCBCCCTTSCBC-SSTTEEECGGGGCSS
T ss_pred             CCCceEEEecCEEEEEeCCccchHHhh-ccc--cccCCCCEEechhhccc-CCCCEEEeeeccCCC
Confidence             45  5799999999999999988876 233  5677899999987 566 899999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.95  E-value=3.1e-28  Score=209.97  Aligned_cols=239  Identities=21%  Similarity=0.250  Sum_probs=165.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee---cCCcc-ccceee-eccccc--cccEEEEE-
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEPSF-GKRSVI-NHTDYL--VNGRIVAS-   82 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~---~~~~~-~~~~~~-~~~~~~--~~~~~~~~-   82 (274)
                      ..+||+||||||+|+++|.+|+ +|++|+|+|+.  +|+.+......   ..... ....+. ...+..  .++++... 
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~  288 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQ  288 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS--TTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSC
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC--CCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCC
Confidence            4689999999999999999997 59999999973  45444321111   00000 000000 000111  13455444 


Q ss_pred             eeEEEec-------CeEEeCCCeEEecCEEEEccCCCCCC---ChhH-------------------HHHHHHccCCchhh
Q 023975           83 PAINITE-------NEVLTAEGRRVVYDYLVIATGHKDPV---PKTR-------------------TERLNQYQAGPTGV  133 (274)
Q Consensus        83 ~~~~~~~-------~~v~~~~~~~~~~~~li~a~G~~~~~---~~~~-------------------~~~~~~~~~g~~~~  133 (274)
                      .+..++.       ..+.+++|..+.++++|+|+|..+..   |+..                   .+++..+++|.+++
T Consensus       289 ~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~  368 (521)
T 1hyu_A          289 SASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV  368 (521)
T ss_dssp             CEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHH
T ss_pred             EEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHH
Confidence            4444431       25677788889999999999986443   3321                   11222345589999


Q ss_pred             hHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECC---CCc--EE
Q 023975          134 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---TGD--TI  206 (274)
Q Consensus       134 e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~~  206 (274)
                      |+|..+.  ..+.+++++.+.+.+..  +    ..+.+.+++ .||++++++.++++..+++.+ .+.+.   +|+  ++
T Consensus       369 E~A~~L~--~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i  440 (521)
T 1hyu_A          369 EAAIDLA--GIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSV  440 (521)
T ss_dssp             HHHHHHH--HHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEE
T ss_pred             HHHHHHH--hhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEE
Confidence            9999998  45789999998877543  1    355667777 699999999999998765543 45543   353  68


Q ss_pred             eecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          207 NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       207 ~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++|.||+++|..|+.+++.. .  +.++++|++.||++++| +.|+|||+|||++.|.
T Consensus       441 ~~D~vi~a~G~~pn~~~l~~-~--l~~~~~G~I~Vd~~~~t-s~p~VfA~GD~~~~~~  494 (521)
T 1hyu_A          441 ALAGIFVQIGLLPNTHWLEG-A--LERNRMGEIIIDAKCET-SVKGVFAAGDCTTVPY  494 (521)
T ss_dssp             ECSEEEECCCEEESCGGGTT-T--SCBCTTSCBCCCTTCBC-SSTTEEECSTTBCCSS
T ss_pred             EcCEEEECcCCCCCchHHhh-h--hccCCCCcEEeCCCCCC-CCCCEEEeecccCCCc
Confidence            99999999999999988875 2  35678899999999998 8999999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=4.2e-28  Score=200.11  Aligned_cols=236  Identities=17%  Similarity=0.195  Sum_probs=149.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec----C------Ccccc----------ceeeec-
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV----E------PSFGK----------RSVINH-   70 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~----~------~~~~~----------~~~~~~-   70 (274)
                      ++||+|||||++|+++|+.|+ +|++|+|+|+.+.+|+.|.......    .      +.+..          ..+..+ 
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL   82 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence            379999999999999999997 5999999999998887765311000    0      00000          000000 


Q ss_pred             cccc--cccEEEE-EeeEEEe--cC--e-EEeCCCeEEecCEEEEccCC--CC---CCChhH------------------
Q 023975           71 TDYL--VNGRIVA-SPAINIT--EN--E-VLTAEGRRVVYDYLVIATGH--KD---PVPKTR------------------  119 (274)
Q Consensus        71 ~~~~--~~~~~~~-~~~~~~~--~~--~-v~~~~~~~~~~~~li~a~G~--~~---~~~~~~------------------  119 (274)
                      .++.  .++++.. ..+..++  .+  . +.++++ .+.||++|+|+|.  .|   .+|+..                  
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  161 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPF  161 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhc
Confidence            0000  1223322 2233332  33  3 667776 8999999999995  33   333321                  


Q ss_pred             -HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCC-CccCCcC--ChhHHHHHHHHHH---------------------
Q 023975          120 -TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKG-SRLLEFI--GPKAGDKTRDWLI---------------------  174 (274)
Q Consensus       120 -~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~-~~~~~~~--~~~~~~~~~~~~~---------------------  174 (274)
                       .+++..+++|.+++|+|..+.  ..+ +++++.+. +.+.+..  ...+...+.+.+.                     
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~--~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVS--TVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMV  238 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHT--TTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHH--hhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccC
Confidence             112223445999999999998  334 68998887 4444422  2223322222222                     


Q ss_pred             -------hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCC--c
Q 023975          175 -------SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN--L  245 (274)
Q Consensus       175 -------~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~--~  245 (274)
                             +.|+ +..+..+.++..    ..+.+.+|+++++|.||+|+|+.|+.+++...++  . +++|++.||++  +
T Consensus       239 ~~~~~~~~~g~-i~~~~~v~~~~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl--~-~~~G~i~vd~~~l~  310 (357)
T 4a9w_A          239 PPVLDARARGV-LAAVPPPARFSP----TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDL--V-TPQGQVEVDGSGLR  310 (357)
T ss_dssp             HHHHHHHHTTC-CCEECCCSEEET----TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTC--B-CTTSCBCBCTTSCB
T ss_pred             hhHHHHHhcCc-eEEecCcceEeC----CeeEECCCCEecCCEEEECCCcCCCCcccCcccc--c-CCCCCccccCCccc
Confidence                   2333 334444555542    2478889999999999999999999999987776  3 67899999999  7


Q ss_pred             cccCCCCeEEec--cccC
Q 023975          246 RVKGQKNIFAIG--DITD  261 (274)
Q Consensus       246 ~~~~~~~i~~~G--d~~~  261 (274)
                      ++ +.|+||++|  ||++
T Consensus       311 ~t-~~~~vya~Gd~d~~~  327 (357)
T 4a9w_A          311 AL-AVPSVWLLGYGDWNG  327 (357)
T ss_dssp             BS-SCTTEEECSSCGGGS
T ss_pred             CC-CCCCeEEeccccccc
Confidence            77 899999999  6665

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.94  E-value=3e-27  Score=201.73  Aligned_cols=246  Identities=15%  Similarity=0.201  Sum_probs=156.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C-----CcEEEEcCCCCceeeccceee--ecC------------Cc--ccc------
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S-----ADVTLIDPKEYFEITWASLRA--MVE------------PS--FGK------   64 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g-----~~v~vie~~~~~g~~~~~~~~--~~~------------~~--~~~------   64 (274)
                      .+||+|||||++|+++|..|++ |     .+|+|||+.+.+|+....+..  .+.            +.  +..      
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~  109 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHK  109 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhh
Confidence            4699999999999999999974 7     999999999988743322100  000            00  000      


Q ss_pred             ----------cee-ee---ccccc----c--ccEEEE-EeeEEEe-----cC----eEEeCCCe----EEecCEEEEccC
Q 023975           65 ----------RSV-IN---HTDYL----V--NGRIVA-SPAINIT-----EN----EVLTAEGR----RVVYDYLVIATG  110 (274)
Q Consensus        65 ----------~~~-~~---~~~~~----~--~~~~~~-~~~~~~~-----~~----~v~~~~~~----~~~~~~li~a~G  110 (274)
                                ... ..   +.+++    .  +..+.. ..+..++     .+    .+.+.++.    ++.||+||+|||
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG  189 (463)
T 3s5w_A          110 HDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG  189 (463)
T ss_dssp             TTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred             cCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence                      000 00   00000    0  122222 1222222     11    45555554    789999999999


Q ss_pred             CCCCCChh-H---H-----------HHHHH-------------ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCC
Q 023975          111 HKDPVPKT-R---T-----------ERLNQ-------------YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIG  162 (274)
Q Consensus       111 ~~~~~~~~-~---~-----------~~~~~-------------~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~  162 (274)
                      ..|.+|.. .   .           ..+..             +++|.+|+|+|..|...+++.+|+++.+.+.+.+..+
T Consensus       190 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~  269 (463)
T 3s5w_A          190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADD  269 (463)
T ss_dssp             CEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCC
T ss_pred             CCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccC
Confidence            98776651 1   0           11211             3448999999999997667899999999887655221


Q ss_pred             --------------------hhHHHHHHHHHHh--------------------------CCcEEEcCceeeeeccCCCce
Q 023975          163 --------------------PKAGDKTRDWLIS--------------------------KKVDVKLGERVNLDSVSEGSD  196 (274)
Q Consensus       163 --------------------~~~~~~~~~~~~~--------------------------~gv~i~~~~~v~~i~~~~~~~  196 (274)
                                          ......+.+.+..                          .|++++.++.|++++.+++.+
T Consensus       270 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~  349 (463)
T 3s5w_A          270 SPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGI  349 (463)
T ss_dssp             CHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEE
T ss_pred             CccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEE
Confidence                                1111111111111                          699999999999998877777


Q ss_pred             eEECC---CCc--EEeecEEEEcccCCCC--chhhcccccccccCCCCcEEeCCCccccC----CCCeEEeccccCCC
Q 023975          197 TYLTS---TGD--TINADCHFLCTGKPVG--SDWLKDTILKDSLDTHGMLMVDENLRVKG----QKNIFAIGDITDIR  263 (274)
Q Consensus       197 ~v~~~---~g~--~~~~d~vv~a~G~~~~--~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~i~~~Gd~~~~~  263 (274)
                      .+.+.   +|+  ++++|.||+|||+.|+  .+++......  .   |++.||+++++..    .++||++|||....
T Consensus       350 ~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~--~---g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~  422 (463)
T 3s5w_A          350 ELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEY--L---GDHEIGRDYRLQTDERCKVAIYAQGFSQASH  422 (463)
T ss_dssp             EEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGG--B---C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred             EEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHH--h---CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence            77665   665  4999999999999998  5666654331  2   7899999998743    45699999998543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.94  E-value=5.7e-29  Score=210.55  Aligned_cols=239  Identities=17%  Similarity=0.095  Sum_probs=153.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCC-ccccceeeecccccc--ccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYLV--NGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~   86 (274)
                      ...+||+||||||+||++|+.|++ |++|+|||+.+.+|+.+..   .+.. ...........+++.  ++++.....+.
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~---gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~  196 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY---GIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG  196 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH---TSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee---cCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence            346899999999999999999985 9999999999888754321   1110 000011111111111  33333222211


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCC-C---CCChhHH-------HH---------------------------HHHccC
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTRT-------ER---------------------------LNQYQA  128 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~-~---~~~~~~~-------~~---------------------------~~~~~~  128 (274)
                         ..+.++++ .+.||++++|+|+. +   .+|+...       +.                           +..+++
T Consensus       197 ---~~v~~~~~-~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGg  272 (456)
T 2vdc_G          197 ---RDASLPEL-RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGG  272 (456)
T ss_dssp             ---TTBCHHHH-HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECS
T ss_pred             ---cEEEhhHh-HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECC
Confidence               12222222 36799999999986 3   3333110       00                           111234


Q ss_pred             CchhhhHHHHhhhhCCCC-eEEEEeCCCcc-CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEE---C-
Q 023975          129 GPTGVELAGEIAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYL---T-  200 (274)
Q Consensus       129 g~~~~e~a~~l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~---~-  200 (274)
                      |.+++|+|..+.  ..++ +|+++.+.+.. ++....    . .+.+++.||++++++.+.++..++..  +.+.   + 
T Consensus       273 G~~a~d~A~~~~--r~Ga~~Vtiv~r~~~~~~p~~~~----e-~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~  345 (456)
T 2vdc_G          273 GDTAMDCVRTAI--RQGATSVKCLYRRDRKNMPGSQR----E-VAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLG  345 (456)
T ss_dssp             SHHHHHHHHHHH--HTTCSEEEEECSSCSTTCSSCHH----H-HHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEE
T ss_pred             ChhHHHHHHHHH--HcCCCEEEEEEeCCccCCCCCHH----H-HHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEec
Confidence            889999998877  3455 69999988764 333221    2 34577889999999998888643211  2221   1 


Q ss_pred             ---C---------CC--cEEeecEEEEcccCCCCch--hhcccccccccCCCCcEEeCCC-ccccCCCCeEEeccccCCC
Q 023975          201 ---S---------TG--DTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       201 ---~---------~g--~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~  263 (274)
                         .         +|  .++++|.||+|+|+.|+..  ++...++  .++++|++.||+. ++| +.|+|||+|||+..+
T Consensus       346 ~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl--~~~~~G~i~vd~~~~~T-s~~~VfA~GD~~~g~  422 (456)
T 2vdc_G          346 VADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPEL--KVTRWGTLLVDHRTKMT-NMDGVFAAGDIVRGA  422 (456)
T ss_dssp             EEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTS--CBCTTSSBCCCTTTCBC-SSTTEEECGGGGSSC
T ss_pred             ccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCe--eECCCCCEEECCCCCcC-CCCCEEEeccccCCc
Confidence               1         23  3789999999999999865  6666555  5778899999997 898 899999999999876


Q ss_pred             CCC
Q 023975          264 VSA  266 (274)
Q Consensus       264 ~~~  266 (274)
                      ...
T Consensus       423 ~~v  425 (456)
T 2vdc_G          423 SLV  425 (456)
T ss_dssp             CSH
T ss_pred             hHH
Confidence            543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.92  E-value=1.2e-26  Score=206.44  Aligned_cols=232  Identities=17%  Similarity=0.127  Sum_probs=154.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc---cccEEEEEeeEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN   86 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   86 (274)
                      ...+||+|||||++||++|+.|++ |++|+|+|+++.+|+.+.......................   .++++...    
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~----  464 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRE----  464 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESS----
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEEC----
Confidence            346899999999999999999984 9999999999988865432211111000000000011111   12222111    


Q ss_pred             EecCeEEeCCCeEEecCEEEEccCCCC-----------CCChhH------HHH-----------HHHcc--CCchhhhHH
Q 023975           87 ITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTR------TER-----------LNQYQ--AGPTGVELA  136 (274)
Q Consensus        87 ~~~~~v~~~~~~~~~~~~li~a~G~~~-----------~~~~~~------~~~-----------~~~~~--~g~~~~e~a  136 (274)
                         ..+..+++..+.||++++|||..+           .+|+..      ...           +..++  +|.+++|+|
T Consensus       465 ---~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A  541 (690)
T 3k30_A          465 ---SPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVA  541 (690)
T ss_dssp             ---CCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHH
T ss_pred             ---CeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHH
Confidence               123333445678999999999873           233321      111           22234  578999999


Q ss_pred             HHhhhhCCCCeEEEEeCCCccCCcCC-hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE-CCCCcEEeecEEEEc
Q 023975          137 GEIAVDFPEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL-TSTGDTINADCHFLC  214 (274)
Q Consensus       137 ~~l~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~-~~~g~~~~~d~vv~a  214 (274)
                      ..+.  ..+.+++++.+.+.+.+... +.....+.+.+++.||+++++++|++++.++..+... ..+++++++|.||+|
T Consensus       542 ~~L~--~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A  619 (690)
T 3k30_A          542 ELLA--QKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMV  619 (690)
T ss_dssp             HHHH--HTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEE
T ss_pred             HHHH--hCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEEC
Confidence            9998  56889999999888766433 4567888899999999999999999997543222222 235568999999999


Q ss_pred             ccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCC
Q 023975          215 TGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       215 ~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +|+.|+..++...+.      .+.       ++ +.++||++|||++.+..
T Consensus       620 ~G~~p~~~l~~~l~~------~~~-------~t-~~~~VyaiGD~~~~~~~  656 (690)
T 3k30_A          620 TARLPREELYLDLVA------RRD-------AG-EIASVRGIGDAWAPGTI  656 (690)
T ss_dssp             SCEEECCHHHHHHHH------HHH-------HT-SCSEEEECGGGTSCBCH
T ss_pred             CCCCCChHHHHHHhh------hhc-------cc-CCCCEEEEeCCCchhhH
Confidence            999999887765332      111       55 79999999999986543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.92  E-value=5e-25  Score=187.49  Aligned_cols=227  Identities=15%  Similarity=0.184  Sum_probs=146.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh----cCCc---EEEEcCCCCceeeccceeee-------------cC---C----c---cc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ----FSAD---VTLIDPKEYFEITWASLRAM-------------VE---P----S---FG   63 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~----~g~~---v~vie~~~~~g~~~~~~~~~-------------~~---~----~---~~   63 (274)
                      +||+|||||++|+++|..|+    .|++   |+|||+.+.+|+.|......             ..   .    .   +.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            69999999999999999985    5899   99999999888776532100             00   0    0   00


Q ss_pred             c-----------ceeeecc-------cccc--ccE--EE-EEeeEEEe--cC----eEEeCC---C--eEEecCEEEEcc
Q 023975           64 K-----------RSVINHT-------DYLV--NGR--IV-ASPAINIT--EN----EVLTAE---G--RRVVYDYLVIAT  109 (274)
Q Consensus        64 ~-----------~~~~~~~-------~~~~--~~~--~~-~~~~~~~~--~~----~v~~~~---~--~~~~~~~li~a~  109 (274)
                      .           ..+....       ++..  ++.  +. ...+..+.  ..    .|.+.+   +  .++.||+||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            0           0000000       0000  111  21 22333332  22    455443   3  578999999999


Q ss_pred             C--CCCCCChhH----------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhH
Q 023975          110 G--HKDPVPKTR----------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA  165 (274)
Q Consensus       110 G--~~~~~~~~~----------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~  165 (274)
                      |  +.|.+|.++                      .+++..+++|.+|+|+|..+.  ..+.+++++.+.+.+++...   
T Consensus       163 G~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~--~~g~~V~li~~~~~~~~~~~---  237 (464)
T 2xve_A          163 GHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCY--KYGAKKLISCYRTAPMGYKW---  237 (464)
T ss_dssp             CSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHH--HTTCSEEEEECSSCCCCCCC---
T ss_pred             CCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHH--HhCCeEEEEEECCCCCCCCC---
Confidence            9  565544321                      112223445999999999998  56889999998877654211   


Q ss_pred             HHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcE--EeCC
Q 023975          166 GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGML--MVDE  243 (274)
Q Consensus       166 ~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~--~v~~  243 (274)
                               ..||+++  ..|++++.  +  .|.+.+|+++++|.||+|||+.|+.+++.. .+++.++.++++  ....
T Consensus       238 ---------~~~V~~~--~~V~~i~~--~--~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~-~~gl~~~~~~~v~~~~~~  301 (464)
T 2xve_A          238 ---------PENWDER--PNLVRVDT--E--NAYFADGSSEKVDAIILCTGYIHHFPFLND-DLRLVTNNRLWPLNLYKG  301 (464)
T ss_dssp             ---------CTTEEEC--SCEEEECS--S--EEEETTSCEEECSEEEECCCBCCCCTTBCT-TTCCCCCSSSCCSSEETT
T ss_pred             ---------CCceEEc--CCeEEEeC--C--EEEECCCCEEeCCEEEECCCCCCCCCCcCc-ccccccCCCcccccccce
Confidence                     2477776  67888853  2  477889999999999999999999998875 222345555455  1122


Q ss_pred             CccccCCCCeEEeccccCC
Q 023975          244 NLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       244 ~~~~~~~~~i~~~Gd~~~~  262 (274)
                      .+++ +.|+||++|||+..
T Consensus       302 ~~~t-~~p~i~aiGd~~~~  319 (464)
T 2xve_A          302 VVWE-DNPKFFYIGMQDQW  319 (464)
T ss_dssp             TEES-SSTTEEECSCSCCS
T ss_pred             EecC-CCCCEEEEeCcccc
Confidence            3556 79999999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.92  E-value=4.7e-26  Score=209.82  Aligned_cols=239  Identities=18%  Similarity=0.201  Sum_probs=156.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCceeeccceeeecCCcccc--ceeeeccccc--cccEEEEEeeE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWASLRAMVEPSFGK--RSVINHTDYL--VNGRIVASPAI   85 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~   85 (274)
                      ..+||+||||||||+++|..|+ .|+ +|+|||+.+.+|+.+.   +.+ +.+..  .......+++  .++++.....+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~---~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v  261 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST---SEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSL  261 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH---HTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCB
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc---ccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEe
Confidence            3579999999999999999997 499 7999999988875421   111 11100  0000001111  14555444333


Q ss_pred             EEecCeEEeCCCeEEecCEEEEccCCC-CCCCh----hH-------HHH-HH-------------------------Hcc
Q 023975           86 NITENEVLTAEGRRVVYDYLVIATGHK-DPVPK----TR-------TER-LN-------------------------QYQ  127 (274)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~li~a~G~~-~~~~~----~~-------~~~-~~-------------------------~~~  127 (274)
                      .  .+.+.++++..+.||++++|||+. |..++    .+       ... +.                         .++
T Consensus       262 ~--~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIG  339 (1025)
T 1gte_A          262 S--ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLG  339 (1025)
T ss_dssp             S--TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEEC
T ss_pred             c--cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEEC
Confidence            2  123444444457899999999984 54321    11       010 11                         234


Q ss_pred             CCchhhhHHHHhhhhCCCC-eEEEEeCCCc-cCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECC---
Q 023975          128 AGPTGVELAGEIAVDFPEK-KVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTS---  201 (274)
Q Consensus       128 ~g~~~~e~a~~l~~~~~~~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---  201 (274)
                      +|.+|+|+|..+.  ..+. +|+++.+.+. .++..+..     .+.+++.||+++.++.+.++..+++.+ .+++.   
T Consensus       340 gG~~g~e~A~~~~--~~G~~~Vtvv~r~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~  412 (1025)
T 1gte_A          340 AGDTAFDCATSAL--RCGARRVFLVFRKGFVNIRAVPEE-----VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTE  412 (1025)
T ss_dssp             SSHHHHHHHHHHH--HTTCSEEEEECSSCGGGCCSCHHH-----HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHH--HcCCCEEEEEEecChhhCCCCHHH-----HHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeE
Confidence            5899999999887  4565 8999998873 33433222     246778899999999998887544432 23321   


Q ss_pred             ---CC---------cEEeecEEEEcccCCC-Cchhhcc-cccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCCC
Q 023975          202 ---TG---------DTINADCHFLCTGKPV-GSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       202 ---~g---------~~~~~d~vv~a~G~~~-~~~~~~~-~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                         +|         .++++|.||+|+|..| +..++.. .++  .++++|++.||+ +++| +.|+|||+|||++.+...
T Consensus       413 ~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl--~~~~~G~I~vd~~~~~T-s~~~VfA~GD~~~~~~~~  489 (1025)
T 1gte_A          413 QDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPI--KFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMANTT  489 (1025)
T ss_dssp             ECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTS--CBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCCCH
T ss_pred             EcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCc--eECCCCCEEECCCCCcc-CCCCEEEeCCCCCCchHH
Confidence               22         3689999999999976 4555554 244  567889999997 7998 899999999999866543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.92  E-value=5.3e-26  Score=192.67  Aligned_cols=239  Identities=15%  Similarity=0.113  Sum_probs=153.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc--------CCcEEEEcCCCCceeeccceeeecCCcc--ccceeeeccccc--cccEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF--------SADVTLIDPKEYFEITWASLRAMVEPSF--GKRSVINHTDYL--VNGRIV   80 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~--------g~~v~vie~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~   80 (274)
                      .+||+||||||+|+++|..|++        |++|+|||+.+.+++.+.   ....+..  .........+++  .++++.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~---~gv~p~~~~~~~~~~~~~~~~~~~~v~~~   79 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR---SGVAPDHPKIKSISKQFEKTAEDPRFRFF   79 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH---HTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc---cccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            4799999999999999999865        899999999987765432   1111111  001111111111  134444


Q ss_pred             EEeeEEEecCeEEeCCCeEEecCEEEEccCCC-C---CCChhH------HHHH----------------------HHccC
Q 023975           81 ASPAINITENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTR------TERL----------------------NQYQA  128 (274)
Q Consensus        81 ~~~~~~~~~~~v~~~~~~~~~~~~li~a~G~~-~---~~~~~~------~~~~----------------------~~~~~  128 (274)
                      ....  ++ +.+.++++ .+.||++|+|||+. +   .+|+.+      ...+                      ..+++
T Consensus        80 ~~v~--v~-~~v~~~~~-~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~  155 (456)
T 1lqt_A           80 GNVV--VG-EHVQPGEL-SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGN  155 (456)
T ss_dssp             ESCC--BT-TTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECC
T ss_pred             eeEE--EC-CEEEECCC-eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECC
Confidence            3321  22 23444444 57899999999996 3   344421      1111                      11334


Q ss_pred             CchhhhHHHHhhhh-------------------CCCCeEEEEeCCCccCCcCC-------------------hhH-----
Q 023975          129 GPTGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIG-------------------PKA-----  165 (274)
Q Consensus       129 g~~~~e~a~~l~~~-------------------~~~~~v~~~~~~~~~~~~~~-------------------~~~-----  165 (274)
                      |.+++|+|..|...                   ....+|+++.+...+...+.                   .++     
T Consensus       156 G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~  235 (456)
T 1lqt_A          156 GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITD  235 (456)
T ss_dssp             SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCH
T ss_pred             CHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchh
Confidence            88999999988731                   12358999998775433221                   111     


Q ss_pred             -------------HHHHHHHHHh------CCcEEEcCceeeeeccCCCceeEECC----------------CC--cEEee
Q 023975          166 -------------GDKTRDWLIS------KKVDVKLGERVNLDSVSEGSDTYLTS----------------TG--DTINA  208 (274)
Q Consensus       166 -------------~~~~~~~~~~------~gv~i~~~~~v~~i~~~~~~~~v~~~----------------~g--~~~~~  208 (274)
                                   .+.+.+.+++      .||++++++.+.++..++....+++.                +|  ++++|
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~  315 (456)
T 1lqt_A          236 EDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPA  315 (456)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEEC
T ss_pred             hhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEc
Confidence                         2344455555      79999999999999865432234433                34  46999


Q ss_pred             cEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          209 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       209 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      |.||+|+|+.|+. +   .++  +++++|++.+|+.++.++.|+||++|||+..|.
T Consensus       316 d~vi~a~G~~p~~-l---~gl--~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~  365 (456)
T 1lqt_A          316 QLVVRSVGYRGVP-T---PGL--PFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT  365 (456)
T ss_dssp             SEEEECSCEECCC-C---TTS--CCBTTTTBCCEETTEETTCSSEEECTHHHHCSC
T ss_pred             CEEEEccccccCC-C---CCC--cccCCCCeeECCCCcCCCCCCEEEEeccCCCCc
Confidence            9999999999976 2   233  567788999999999448999999999986554

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.92  E-value=2.3e-25  Score=190.97  Aligned_cols=233  Identities=18%  Similarity=0.151  Sum_probs=150.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeec-CCcccccee-eec-cccccccEEE-EEeeEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV-EPSFGKRSV-INH-TDYLVNGRIV-ASPAINI   87 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~~~   87 (274)
                      ++||+|||||++|+++|++|+ . ++|+|||+++.+|+.+....... ........+ ... ..+..++++. ...+..+
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLETSALGV  186 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTCCTTEEEETTEEECCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence            469999999999999999996 6 99999999998876654321110 000000000 000 0111233332 1222222


Q ss_pred             e--cCeE--Ee-CCCe--EEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhh---hCCCCeEEEEeCCCcc
Q 023975           88 T--ENEV--LT-AEGR--RVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAV---DFPEKKVTLVHKGSRL  157 (274)
Q Consensus        88 ~--~~~v--~~-~~~~--~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~---~~~~~~v~~~~~~~~~  157 (274)
                      +  .+.+  .. +++.  .+.||++++|||+.|..|+++...+.    +....+-+..+..   ..++.++.++..... 
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~~----gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~-  261 (493)
T 1y56_A          187 FDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMP----GVFRRDFALEVMNVWEVAPGRKVAVTGSKAD-  261 (493)
T ss_dssp             EECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTST----TEEEHHHHHHHHHTSCBCSCSEEEEESTTHH-
T ss_pred             EcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCCC----CEEEcHHHHHHHHhcccCCCCEEEEECCCHH-
Confidence            2  2211  11 3443  68999999999998665543322111    1111121222221   134566666543221 


Q ss_pred             CCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCC
Q 023975          158 LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG  237 (274)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g  237 (274)
                                .+.+.+++.|+++++++.|.+++.+++...+.+.+|+++++|.||+|+|..|+.+++...++.+.++++|
T Consensus       262 ----------gle~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g  331 (493)
T 1y56_A          262 ----------EVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGY  331 (493)
T ss_dssp             ----------HHHHHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTE
T ss_pred             ----------HHHHHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCc
Confidence                      2226778899999999999999876655567788888999999999999999999998888766566788


Q ss_pred             cEE-eCCCccccCCCCeEEeccccCCC
Q 023975          238 MLM-VDENLRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       238 ~~~-v~~~~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ++. +|++++  +.|+||++|||++.+
T Consensus       332 ~i~~vd~~~~--s~~~vya~GD~~~~~  356 (493)
T 1y56_A          332 YSPVLDEYHR--IKDGIYVAGSAVSIK  356 (493)
T ss_dssp             EEECCCTTSE--EETTEEECSTTTCCC
T ss_pred             eeeccccccC--cCCCEEEEeccCCcc
Confidence            887 899988  689999999999865

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.91  E-value=1.9e-26  Score=205.82  Aligned_cols=231  Identities=19%  Similarity=0.163  Sum_probs=150.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc-ccEEE---EEeeE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV-NGRIV---ASPAI   85 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~   85 (274)
                      ...+||+|||||++|+++|+.|+ +|++|+|||+.+.+|+.+........  ..  .+....+++. .++..   ....+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg--~~--~~~~~~~~~~~~i~~~~~~~~~~v  462 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPG--LG--EWSYHRDYRETQITKLLKKNKESQ  462 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTT--CG--GGHHHHHHHHHHHHHHHHHSTTCE
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCC--hH--HHHHHHHHHHHHHHHhhcccCCce
Confidence            34689999999999999999997 59999999999988765432211100  00  0000000100 00000   00011


Q ss_pred             EEe-cCeEEeCCCeEEecCEEEEccCCCC--------C---CChhH--------HH-----------HHHHcc--CCchh
Q 023975           86 NIT-ENEVLTAEGRRVVYDYLVIATGHKD--------P---VPKTR--------TE-----------RLNQYQ--AGPTG  132 (274)
Q Consensus        86 ~~~-~~~v~~~~~~~~~~~~li~a~G~~~--------~---~~~~~--------~~-----------~~~~~~--~g~~~  132 (274)
                      .+. ...+.++++..+.||++|+|||+.+        .   +|+..        ..           ++..++  +|.++
T Consensus       463 ~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g  542 (729)
T 1o94_A          463 LALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMA  542 (729)
T ss_dssp             EECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHH
T ss_pred             EEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchH
Confidence            221 1234444455688999999999872        2   33321        11           111133  57899


Q ss_pred             hhHHHHhhhhCCCCeEEEEeCCCccCCc--CChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE--CCCC-cE--
Q 023975          133 VELAGEIAVDFPEKKVTLVHKGSRLLEF--IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL--TSTG-DT--  205 (274)
Q Consensus       133 ~e~a~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~--~~~g-~~--  205 (274)
                      +|+|..+.  ..+.+|+++.+.+ +.+.  .+.. ...+.+.+++.||++++++.++++..+  .+.+.  +.++ ++  
T Consensus       543 ~e~A~~l~--~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~~  616 (729)
T 1o94_A          543 PSLAEKLA--TAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTY  616 (729)
T ss_dssp             HHHHHHHH--HTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEETT--EEEEEETTCSCSCCCC
T ss_pred             HHHHHHHH--HcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEECC--eEEEEEecCCceEEec
Confidence            99999998  5688999999988 5441  2222 466778889999999999999999743  33332  2333 22  


Q ss_pred             ----------------EeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          206 ----------------INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       206 ----------------~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                                      ++||.||+|+|..|+.+++.....          .+|++++| +.++||++|||++.
T Consensus       617 ~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~----------~vd~~~~t-~~~~VyAiGD~~~~  678 (729)
T 1o94_A          617 RGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA----------RESEWAEN-DIKGIYLIGDAEAP  678 (729)
T ss_dssp             CCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH----------TGGGTGGG-TCCEEEECGGGTSC
T ss_pred             ccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh----------hccccccc-CCCCeEEEeCccch
Confidence                            999999999999999887754221          15778888 89999999999974

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.91  E-value=3.9e-25  Score=202.45  Aligned_cols=233  Identities=17%  Similarity=0.158  Sum_probs=153.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee-eecCCccccceeeecc-cc--ccccEEEEE-eeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-AMVEPSFGKRSVINHT-DY--LVNGRIVAS-PAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~~~-~~~~   86 (274)
                      ++||+||||||||+++|..|+ .|++|+|||+++.+|+.+.... ..+............. .+  +.++++... .+..
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~  207 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG  207 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence            479999999999999999997 5999999999988886554210 1111000000000000 00  113333321 2222


Q ss_pred             EecC-------------eEEe------CCCeEEecCEEEEccCCCCCC---ChhH---------HHH-HH----------
Q 023975           87 ITEN-------------EVLT------AEGRRVVYDYLVIATGHKDPV---PKTR---------TER-LN----------  124 (274)
Q Consensus        87 ~~~~-------------~v~~------~~~~~~~~~~li~a~G~~~~~---~~~~---------~~~-~~----------  124 (274)
                      ++..             .+..      .++..+.||++|+|||+.|..   |+.+         ... +.          
T Consensus       208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~v  287 (965)
T 2gag_A          208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARI  287 (965)
T ss_dssp             EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSE
T ss_pred             eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeE
Confidence            2211             1111      112468999999999987543   3211         111 11          


Q ss_pred             -HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCc-eeEECC
Q 023975          125 -QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGS-DTYLTS  201 (274)
Q Consensus       125 -~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~  201 (274)
                       .+++|.+++|+|..+.  ..+.+++++.+.+.+.+       .  .+.+++.||++++++.+.+++.+ ++. ..+++.
T Consensus       288 vViGgG~~g~E~A~~L~--~~G~~Vtvv~~~~~~~~-------~--~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~  356 (965)
T 2gag_A          288 AVATTNDSAYELVRELA--ATGGVVAVIDARSSISA-------A--AAQAVADGVQVISGSVVVDTEADENGELSAIVVA  356 (965)
T ss_dssp             EEEESSTTHHHHHHHHG--GGTCCSEEEESCSSCCH-------H--HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEcCCHHHHHHHHHHH--HcCCcEEEEECCCccch-------h--HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEE
Confidence             1234899999999998  45778999999876542       1  56788899999999999999863 232 245444


Q ss_pred             C-------C--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCcc-----ccCCCCeEEeccccCCCCC
Q 023975          202 T-------G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLR-----VKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       202 ~-------g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~~~i~~~Gd~~~~~~~  265 (274)
                      +       |  ++++||.||+++|..|+.+++...        .+++.+|+.++     + +.|+||++|||++.+..
T Consensus       357 ~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~--------~g~i~vd~~~~~~v~~t-s~p~IyAaGD~a~~~~l  425 (965)
T 2gag_A          357 ELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR--------QGKLDWDTTIHAFVPAD-AVANQHLAGAMTGRLDT  425 (965)
T ss_dssp             EECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT--------TCCEEEETTTTEEEECS-CCTTEEECGGGGTCCSH
T ss_pred             eccccCCCCceEEEEcCEEEECCCcCcChHHHHhC--------CCcEEEcCcccccccCC-CCCCEEEEEecCCchhH
Confidence            3       4  589999999999999998876542        46788888776     5 89999999999987653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.91  E-value=2.3e-24  Score=183.01  Aligned_cols=229  Identities=17%  Similarity=0.229  Sum_probs=143.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CC--cEEEEcCCCCceeeccceeeec---------------------------CCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SA--DVTLIDPKEYFEITWASLRAMV---------------------------EPS   61 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~--~v~vie~~~~~g~~~~~~~~~~---------------------------~~~   61 (274)
                      +.+||+|||||++|+++|+.|++ |.  +|+|||+.+.+|+.|.......                           ...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~   84 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL   84 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence            45899999999999999999974 88  9999999988876654321000                           000


Q ss_pred             cc---cc------------------eeeec-------ccccc--ccEE-EEEeeEEEe--cC--eEEeCC---Ce---EE
Q 023975           62 FG---KR------------------SVINH-------TDYLV--NGRI-VASPAINIT--EN--EVLTAE---GR---RV  100 (274)
Q Consensus        62 ~~---~~------------------~~~~~-------~~~~~--~~~~-~~~~~~~~~--~~--~v~~~~---~~---~~  100 (274)
                      +.   ..                  .+...       .++..  ...+ ....+..+.  ..  .|.+.+   |.   ++
T Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~  164 (447)
T 2gv8_A           85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKD  164 (447)
T ss_dssp             CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEE
T ss_pred             hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEE
Confidence            00   00                  00000       00000  1112 122333332  22  454443   55   78


Q ss_pred             ecCEEEEccCC--CCCCChhHH-HH-------------------------HHHccCCchhhhHHHHhhhhCCCCe-EEEE
Q 023975          101 VYDYLVIATGH--KDPVPKTRT-ER-------------------------LNQYQAGPTGVELAGEIAVDFPEKK-VTLV  151 (274)
Q Consensus       101 ~~~~li~a~G~--~~~~~~~~~-~~-------------------------~~~~~~g~~~~e~a~~l~~~~~~~~-v~~~  151 (274)
                      .||+||+|+|.  .|.+|.++. ..                         +..+++|.+|+|+|..+.  ..+.+ |+++
T Consensus       165 ~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~--~~~~~~V~l~  242 (447)
T 2gv8_A          165 IFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT--PVAKHPIYQS  242 (447)
T ss_dssp             EESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHT--TTSCSSEEEE
T ss_pred             EeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHH--HHhCCcEEEE
Confidence            99999999998  555443221 11                         111233899999999998  56777 9999


Q ss_pred             eCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcE-EeecEEEEcccCCCCchh-----hc
Q 023975          152 HKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT-INADCHFLCTGKPVGSDW-----LK  225 (274)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~-----~~  225 (274)
                      .+.+.+               ++..||.+  +..|+++..++  ..|.+.+|++ +++|.||+|||+.|+.++     +.
T Consensus       243 ~r~~~~---------------l~~~~i~~--~~~v~~~~~~~--~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~  303 (447)
T 2gv8_A          243 LLGGGD---------------IQNESLQQ--VPEITKFDPTT--REIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLK  303 (447)
T ss_dssp             CTTCCS---------------CBCSSEEE--ECCEEEEETTT--TEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCC
T ss_pred             eCCCCc---------------CCCCCeEE--ecCeEEEecCC--CEEEECCCCEeccCCEEEECCCCCcCCCCCcccccc
Confidence            987654               34456664  56788885433  3677888976 799999999999999998     65


Q ss_pred             ccccccccCCCCcEEeCCCcc--ccCCCCeEEeccccCCC
Q 023975          226 DTILKDSLDTHGMLMVDENLR--VKGQKNIFAIGDITDIR  263 (274)
Q Consensus       226 ~~~~~~~~~~~g~~~v~~~~~--~~~~~~i~~~Gd~~~~~  263 (274)
                      ..+..  +..++.+.++.+.+  ..++|++|++||+...+
T Consensus       304 ~~~~~--i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~  341 (447)
T 2gv8_A          304 SPETK--LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVV  341 (447)
T ss_dssp             STTTC--CCSSSSSCCSEETTTEETTCTTEEESSCCBSSC
T ss_pred             cccCc--eecCCCcccccccccccCCCCcEEEEecccccc
Confidence            53222  22344444443332  13799999999998653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.90  E-value=8.9e-25  Score=185.35  Aligned_cols=240  Identities=15%  Similarity=0.118  Sum_probs=150.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C--CcEEEEcCCCCceeeccceeeecCCccc--cceeeecccccc--ccEEEEEee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S--ADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYLV--NGRIVASPA   84 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g--~~v~vie~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~   84 (274)
                      ..+||+||||||+|+++|..|++ |  ++|+|||+.+.+++.+.   ....+.+.  ........+++.  ++++.....
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~---~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~   81 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR---FGVAPDHPEVKNVINTFTQTARSDRCAFYGNVE   81 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH---HTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee---cccCCCCccHHHHHHHHHHHHHhCCcEEEeeeE
Confidence            35799999999999999999974 6  99999999988764431   11111110  011111111111  334332221


Q ss_pred             EEEecCeEEeCCCeEEecCEEEEccCCCC-C---CChhH------HHHH----------------------HHccCCchh
Q 023975           85 INITENEVLTAEGRRVVYDYLVIATGHKD-P---VPKTR------TERL----------------------NQYQAGPTG  132 (274)
Q Consensus        85 ~~~~~~~v~~~~~~~~~~~~li~a~G~~~-~---~~~~~------~~~~----------------------~~~~~g~~~  132 (274)
                      +  . +.+.+++ ..+.||++|+|||+.+ .   +|+.+      ...+                      ..+++|.+|
T Consensus        82 v--~-~~V~~~~-~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g  157 (460)
T 1cjc_A           82 V--G-RDVTVQE-LQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVA  157 (460)
T ss_dssp             B--T-TTBCHHH-HHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHH
T ss_pred             E--e-eEEEecc-ceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHH
Confidence            1  1 2233333 2468999999999873 3   44321      1111                      112348999


Q ss_pred             hhHHHHhhhh------------------CCCC-eEEEEeCCCcc--------------CCcCC-----hh----------
Q 023975          133 VELAGEIAVD------------------FPEK-KVTLVHKGSRL--------------LEFIG-----PK----------  164 (274)
Q Consensus       133 ~e~a~~l~~~------------------~~~~-~v~~~~~~~~~--------------~~~~~-----~~----------  164 (274)
                      +|+|..|...                  ..+. +|+++.+.+.+              ++..+     ..          
T Consensus       158 ~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~  237 (460)
T 1cjc_A          158 LDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKE  237 (460)
T ss_dssp             HHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTT
T ss_pred             HHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhh
Confidence            9999988730                  2344 79999987754              12100     00          


Q ss_pred             -------HHHHHHHHHHh--------------CCcEEEcCceeeeeccCC-C-ce-eEECC---------------CC--
Q 023975          165 -------AGDKTRDWLIS--------------KKVDVKLGERVNLDSVSE-G-SD-TYLTS---------------TG--  203 (274)
Q Consensus       165 -------~~~~~~~~~~~--------------~gv~i~~~~~v~~i~~~~-~-~~-~v~~~---------------~g--  203 (274)
                             +.+.+.+.+++              .||++++++.+.++..++ + .+ .+++.               +|  
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~  317 (460)
T 1cjc_A          238 AARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDV  317 (460)
T ss_dssp             SCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCce
Confidence                   23344445555              789999999999997653 2 22 23332               34  


Q ss_pred             cEEeecEEEEcccCCCCchhhccccccc-ccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          204 DTINADCHFLCTGKPVGSDWLKDTILKD-SLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       204 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ++++||.||+++|+.|+. +   .  ++ +++++|++.+|+.+++.+.|+||++|||+..|.
T Consensus       318 ~~i~~d~Vi~a~G~~p~~-l---~--gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~  373 (460)
T 1cjc_A          318 EDLPCGLVLSSIGYKSRP-I---D--PSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT  373 (460)
T ss_dssp             EEEECSEEEECCCEECCC-C---C--TTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT
T ss_pred             EEEEcCEEEECCCCCCCC-C---C--CCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC
Confidence            579999999999999976 2   2  33 466788999999999933799999999996543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.89  E-value=2.9e-22  Score=172.99  Aligned_cols=243  Identities=17%  Similarity=0.158  Sum_probs=149.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeecccee-----eecC-----Cccc--------c-ceeeecc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWASLR-----AMVE-----PSFG--------K-RSVINHT   71 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~~~~~-----~~~~-----~~~~--------~-~~~~~~~   71 (274)
                      ++||+|||||++|+++|+.|+ + |++|+|+|+++.+|+.|....     ....     ..+.        . ..+....
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~   87 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP   87 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence            479999999999999999998 5 999999999998886654211     0000     0000        0 0000000


Q ss_pred             ---cc----cc--cc--EEE-EEeeE--EEecC----eEEeCCCeEEecCEEEEccCC--CCCCChhH------------
Q 023975           72 ---DY----LV--NG--RIV-ASPAI--NITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTR------------  119 (274)
Q Consensus        72 ---~~----~~--~~--~~~-~~~~~--~~~~~----~v~~~~~~~~~~~~li~a~G~--~~~~~~~~------------  119 (274)
                         .+    ..  ++  .+. ...+.  ..+..    .|.+++|.++.||+||+|+|.  .|..|.++            
T Consensus        88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~  167 (540)
T 3gwf_A           88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHT  167 (540)
T ss_dssp             HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEe
Confidence               00    00  11  121 11222  22333    677888888999999999994  55544321            


Q ss_pred             ----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc-CCcCChhHHHHHHHHH---------------
Q 023975          120 ----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWL---------------  173 (274)
Q Consensus       120 ----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~---------------  173 (274)
                                .+++..+++|.+|+|++..+.  ..+.+++++.+.+.+ ++..++.+...+.+.+               
T Consensus       168 ~~~~~~~~~~~krV~VIG~G~sgve~a~~l~--~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  245 (540)
T 3gwf_A          168 AAWPEGKSLAGRRVGVIGTGSTGQQVITSLA--PEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSA  245 (540)
T ss_dssp             GGCCSSCCCTTSEEEEECCSHHHHHHHHHHT--TTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSS
T ss_pred             ecCCCccccccceEEEECCCchHHHHHHHHH--hhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhcc
Confidence                      122333455999999999998  568999999999873 3433322221111111               


Q ss_pred             --------------------------------------------------------------------------------
Q 023975          174 --------------------------------------------------------------------------------  173 (274)
Q Consensus       174 --------------------------------------------------------------------------------  173 (274)
                                                                                                      
T Consensus       246 ~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~  325 (540)
T 3gwf_A          246 VAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGL  325 (540)
T ss_dssp             SCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSC
T ss_pred             ccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence                                                                                            


Q ss_pred             ---------------HhCCcEEEc--CceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccccc----ccc
Q 023975          174 ---------------ISKKVDVKL--GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL----KDS  232 (274)
Q Consensus       174 ---------------~~~gv~i~~--~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~----~~~  232 (274)
                                     .+.+|+++.  +..|+++..+    .|++.+|+++++|.||+|||+.++..++....+    +..
T Consensus       326 g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~~  401 (540)
T 3gwf_A          326 FAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK----GVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLH  401 (540)
T ss_dssp             CCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS----EEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGCB
T ss_pred             CccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC----eEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCcC
Confidence                           144778875  6788888643    488899999999999999999987645543221    001


Q ss_pred             cCC--CCcEEeCCCccccCCCCeEEe-ccccC
Q 023975          233 LDT--HGMLMVDENLRVKGQKNIFAI-GDITD  261 (274)
Q Consensus       233 ~~~--~g~~~v~~~~~~~~~~~i~~~-Gd~~~  261 (274)
                      +++  .+.+.....+.+++.||+|.+ |..+.
T Consensus       402 l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~  433 (540)
T 3gwf_A          402 INDHWDGQPTSYLGVSTANFPNWFMVLGPNGP  433 (540)
T ss_dssp             HHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB
T ss_pred             HHHhhccChhhccccccCCCCceEEEecCCCC
Confidence            110  123444444566689999999 76544

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.88  E-value=3.8e-23  Score=183.49  Aligned_cols=220  Identities=15%  Similarity=0.196  Sum_probs=143.4

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeecccccc--ccEEEEEeeEEE
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI   87 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (274)
                      ...+||+|||||++|+++|..|++ |++|+|+|+++.+|+.+..................+.+.+.  ++++.....+. 
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-  449 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT-  449 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC-
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEec-
Confidence            346899999999999999999974 99999999999888665422111111000000001111111  33333322111 


Q ss_pred             ecCeEEeCCCeEE-ecCEEEEccCCCCCCChhH---------H-H----------HHHHccCCchhhhHHHHhhhhCCC-
Q 023975           88 TENEVLTAEGRRV-VYDYLVIATGHKDPVPKTR---------T-E----------RLNQYQAGPTGVELAGEIAVDFPE-  145 (274)
Q Consensus        88 ~~~~v~~~~~~~~-~~~~li~a~G~~~~~~~~~---------~-~----------~~~~~~~g~~~~e~a~~l~~~~~~-  145 (274)
                            .   ..+ .||++|+|||+.|..|+++         . +          ++..+++|.+|+|+|..+.+  .+ 
T Consensus       450 ------~---~~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~--~G~  518 (671)
T 1ps9_A          450 ------A---DQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQ--PGE  518 (671)
T ss_dssp             ------S---SSSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTC--CSS
T ss_pred             ------H---HHhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHh--cCC
Confidence                  1   124 8999999999886554321         1 1          11113348899999998873  22 


Q ss_pred             ------------------------------------CeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          146 ------------------------------------KKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       146 ------------------------------------~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                                                          .+++++.+.+..+. .+++.....+.+.+++.||++++++.+++
T Consensus       519 ~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~  598 (671)
T 1ps9_A          519 STSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQK  598 (671)
T ss_dssp             CGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEE
T ss_pred             CcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEE
Confidence                                                35667766554443 44556667778889999999999999999


Q ss_pred             eccCCCceeEECCCC--cEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCC
Q 023975          189 DSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       189 i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +..  +.+.+. .+|  +++++|.||+|+|+.|+.+++....                  . ..++||++|||+....
T Consensus       599 i~~--~~v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~------------------~-~g~~v~aiGD~~~~~~  654 (671)
T 1ps9_A          599 IDD--DGLHVV-INGETQVLAVDNVVICAGQEPNRALAQPLI------------------D-SGKTVHLIGGCDVAME  654 (671)
T ss_dssp             EET--TEEEEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH------------------T-TTCCEEECGGGTCCSS
T ss_pred             EeC--CeEEEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH------------------h-cCCCEEEECCcCccCc
Confidence            873  334444 567  5799999999999999887765311                  1 2468999999988654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.85  E-value=1.7e-21  Score=145.13  Aligned_cols=94  Identities=18%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD  242 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~  242 (274)
                      +.+.+.+.+.+++.|++++.+ +|++++.+++.+.+.+++| ++.+|.||+|+|..|+  ++...++  +++ +|.+.||
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~--~~~-~g~i~vd  128 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT--LPSLLGL--TRR-GAYIDTD  128 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH--HHHHHTC--CEE-TTEECCC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC--ccccCCC--Ccc-CceEEeC
Confidence            346677888889999999999 9999987777788888888 8999999999999874  3444454  456 8889999


Q ss_pred             CCccccCCCCeEEeccccCCCC
Q 023975          243 ENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       243 ~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      +.++| +.|+||++|||++.+.
T Consensus       129 ~~~~t-~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A          129 EGGRT-SYPRVYAAGVARGKVP  149 (180)
T ss_dssp             TTCBC-SSTTEEECGGGGTCCS
T ss_pred             CCCCc-CCCCEEEeecccCcch
Confidence            99999 8999999999998765

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.85  E-value=3.7e-21  Score=166.27  Aligned_cols=144  Identities=22%  Similarity=0.252  Sum_probs=89.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeee-----c---------CCc----cccc-eeeecc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-----V---------EPS----FGKR-SVINHT   71 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~-----~---------~~~----~~~~-~~~~~~   71 (274)
                      .++||+|||||++|+++|+.|+ .|++|+|||+++.+|+.|.....-     .         .+.    +... .+....
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~   87 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP   87 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence            3589999999999999999997 599999999999888776321100     0         000    0000 000000


Q ss_pred             ---ccc----c--cc--EE-EEEee--EEEecC----eEEeCCCeEEecCEEEEccC--CCCCCC---hhH---------
Q 023975           72 ---DYL----V--NG--RI-VASPA--INITEN----EVLTAEGRRVVYDYLVIATG--HKDPVP---KTR---------  119 (274)
Q Consensus        72 ---~~~----~--~~--~~-~~~~~--~~~~~~----~v~~~~~~~~~~~~li~a~G--~~~~~~---~~~---------  119 (274)
                         .++    .  ++  .+ ....+  +..+..    .|.+++|.++.||+||+|+|  +.|..|   +.+         
T Consensus        88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~  167 (545)
T 3uox_A           88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHS  167 (545)
T ss_dssp             HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEc
Confidence               000    0  00  11 11122  222322    67788898999999999999  555443   321         


Q ss_pred             -----------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc
Q 023975          120 -----------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL  157 (274)
Q Consensus       120 -----------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~  157 (274)
                                       .+++..+++|.+|+|++..|.  ..+.+++++.+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la--~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          168 SRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAA--ETAKELYVFQRTPNW  220 (545)
T ss_dssp             GGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHT--TTBSEEEEEESSCCC
T ss_pred             ccccccccccccccccCCCeEEEECCCccHHHHHHHHH--hhCCEEEEEEcCCCc
Confidence                             112233455999999999998  568899999998873

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.84  E-value=8.1e-21  Score=164.31  Aligned_cols=144  Identities=21%  Similarity=0.266  Sum_probs=90.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee--e---cCCccccce--------------eeec-
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--M---VEPSFGKRS--------------VINH-   70 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~--~---~~~~~~~~~--------------~~~~-   70 (274)
                      .++||+|||||++|+++|..|+ .|++|+|||+++.+|+.|....+  .   .........              +... 
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~   99 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP   99 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence            3579999999999999999997 59999999999988876642210  0   000000000              0000 


Q ss_pred             --ccc----cc--cc--EEE-EEee--EEEecC----eEEeCCCeEEecCEEEEccC--CCCCCC---hhH---------
Q 023975           71 --TDY----LV--NG--RIV-ASPA--INITEN----EVLTAEGRRVVYDYLVIATG--HKDPVP---KTR---------  119 (274)
Q Consensus        71 --~~~----~~--~~--~~~-~~~~--~~~~~~----~v~~~~~~~~~~~~li~a~G--~~~~~~---~~~---------  119 (274)
                        ..+    ..  ++  .+. ...+  +..+..    .|.+++|.++.||+||+|+|  +.|..|   +.+         
T Consensus       100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~  179 (549)
T 4ap3_A          100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHT  179 (549)
T ss_dssp             HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEe
Confidence              000    00  11  111 1122  222333    67788888899999999999  455444   322         


Q ss_pred             -----------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc
Q 023975          120 -----------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL  157 (274)
Q Consensus       120 -----------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~  157 (274)
                                 .+++..+++|.+|+|++..|..  .+.+++++.+.+.+
T Consensus       180 ~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~--~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          180 ARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAE--QAEQLFVFQRSANY  226 (549)
T ss_dssp             GGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSCCC
T ss_pred             ccccccccccCCCEEEEECCCchHHHHHHHHHh--hCCEEEEEECCCCc
Confidence                       1122234459999999999984  47899999998864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.81  E-value=2.1e-19  Score=155.79  Aligned_cols=144  Identities=21%  Similarity=0.370  Sum_probs=87.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceee-----ecCC-----cccc---------ceeeec-
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA-----MVEP-----SFGK---------RSVINH-   70 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~-----~~~~-----~~~~---------~~~~~~-   70 (274)
                      ..+||+|||||++|+++|+.|+ .|++|+|+|+.+.+|+.|.....     ....     .+..         ..+... 
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            3589999999999999999997 49999999999988876632110     0000     0000         000000 


Q ss_pred             --cccc-------c-ccEEE-EEeeEEE--ecC----eEEeCCCeEEecCEEEEccCC--CCCCChhHH-----------
Q 023975           71 --TDYL-------V-NGRIV-ASPAINI--TEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-----------  120 (274)
Q Consensus        71 --~~~~-------~-~~~~~-~~~~~~~--~~~----~v~~~~~~~~~~~~li~a~G~--~~~~~~~~~-----------  120 (274)
                        .+++       . ...+. ...+..+  +..    .+.+++|.++.+|+||+|+|.  .|..|.++.           
T Consensus        95 ~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs  174 (542)
T 1w4x_A           95 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHT  174 (542)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEG
T ss_pred             HHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEC
Confidence              0000       0 11121 1122222  221    567778888999999999995  454443210           


Q ss_pred             ------------HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc
Q 023975          121 ------------ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL  157 (274)
Q Consensus       121 ------------~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~  157 (274)
                                  +++..+++|.+++|++..+..  .+.+++++.+.+.+
T Consensus       175 ~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~--~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          175 GNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRTPHF  221 (542)
T ss_dssp             GGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSCCC
T ss_pred             CCCCCchhccCCCEEEEECCCccHHHHHHHHhh--cCceEEEEEcCCcc
Confidence                        111223448899999999984  47899999987765

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.75  E-value=2.8e-17  Score=141.02  Aligned_cols=163  Identities=14%  Similarity=0.147  Sum_probs=101.6

Q ss_pred             eEEecCEEEEccCCCCCCChhH-------------------------HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEe
Q 023975           98 RRVVYDYLVIATGHKDPVPKTR-------------------------TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVH  152 (274)
Q Consensus        98 ~~~~~~~li~a~G~~~~~~~~~-------------------------~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~  152 (274)
                      .++.++.+|+|+|..|.+|+..                         .+++..+++|.||+|++..|.....+++++++.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            4678999999999988877621                         112445666999999999998666788999999


Q ss_pred             CCCccCCcC---------ChhHHHHH-------------------------------HHH-----HH-----hCCcEEEc
Q 023975          153 KGSRLLEFI---------GPKAGDKT-------------------------------RDW-----LI-----SKKVDVKL  182 (274)
Q Consensus       153 ~~~~~~~~~---------~~~~~~~~-------------------------------~~~-----~~-----~~gv~i~~  182 (274)
                      |.+.+.+..         .+...+.+                               .+.     +.     .....+..
T Consensus       279 R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~  358 (501)
T 4b63_A          279 RDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILP  358 (501)
T ss_dssp             SSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEEC
T ss_pred             CCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecC
Confidence            987664421         11111111                               111     11     01234556


Q ss_pred             CceeeeeccCCC--ce------------eEECCCCcEEeecEEEEcccCCCCch-hhcccccccccCCCCcEEeCCCccc
Q 023975          183 GERVNLDSVSEG--SD------------TYLTSTGDTINADCHFLCTGKPVGSD-WLKDTILKDSLDTHGMLMVDENLRV  247 (274)
Q Consensus       183 ~~~v~~i~~~~~--~~------------~v~~~~g~~~~~d~vv~a~G~~~~~~-~~~~~~~~~~~~~~g~~~v~~~~~~  247 (274)
                      +..+..+.....  .+            .+.+.+|+++++|.||+||||.++.+ ++....-.+..+.+|.+.|+.+++.
T Consensus       359 ~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~  438 (501)
T 4b63_A          359 ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRV  438 (501)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBB
T ss_pred             CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEE
Confidence            666655543322  12            24467788999999999999988753 3433222345667788889887654


Q ss_pred             c-------CCCCeEEecccc
Q 023975          248 K-------GQKNIFAIGDIT  260 (274)
Q Consensus       248 ~-------~~~~i~~~Gd~~  260 (274)
                      .       ..++||+.|-+-
T Consensus       439 ~~~~~~~~~~~~i~~qg~~~  458 (501)
T 4b63_A          439 EMDPSKVSSEAGIWLQGCNE  458 (501)
T ss_dssp             CCCTTTBCTTCEEEECSCCH
T ss_pred             eecCCccCCCceEEecCCCc
Confidence            1       246799998653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.62  E-value=3.3e-17  Score=138.42  Aligned_cols=96  Identities=13%  Similarity=0.025  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEccc--------CCCCchhhcccccccccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--------KPVGSDWLKDTILKDSLDT  235 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--------~~~~~~~~~~~~~~~~~~~  235 (274)
                      .+...+.+.+++.| +|+++++|++|+.+++.+.|.+.+|+++.||.||+|+|        +.|+.+......+.. ...
T Consensus       205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~-~~~  282 (431)
T 3k7m_X          205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE-GHG  282 (431)
T ss_dssp             CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH-CCC
T ss_pred             cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh-CCC
Confidence            34455555566667 99999999999988888889999998899999999999        666654433332221 223


Q ss_pred             CCcEEeCCCccccCCCCeEEeccccCC
Q 023975          236 HGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       236 ~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      ...++|+..+++ +.+++|+.||+...
T Consensus       283 ~~~~kv~~~~~~-~~~~i~~~~d~~~~  308 (431)
T 3k7m_X          283 GQGLKILIHVRG-AEAGIECVGDGIFP  308 (431)
T ss_dssp             CCEEEEEEEEES-CCTTEEEEBSSSSS
T ss_pred             cceEEEEEEECC-CCcCceEcCCCCEE
Confidence            445899999998 68999999997543

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.51  E-value=1.7e-13  Score=114.74  Aligned_cols=56  Identities=14%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++++++|+++..+++.+.|.+.+| ++.||.||+|+|..+
T Consensus       132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            35778888889889999999999999988777788888888 899999999999765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.50  E-value=7.3e-14  Score=107.96  Aligned_cols=56  Identities=11%  Similarity=0.001  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHhC-CcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+++. |++++ +++|+++..+++.+ .+.+.+|+++.||.||+|+|....
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4667788888886 99998 56899998766654 577888888999999999998543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.49  E-value=7.8e-15  Score=124.95  Aligned_cols=143  Identities=15%  Similarity=0.058  Sum_probs=81.2

Q ss_pred             eEEecCEEEEccCCCCCCCh-------hHHHHHH---HccC------------------CchhhhHHHHhhhhCCCCeEE
Q 023975           98 RRVVYDYLVIATGHKDPVPK-------TRTERLN---QYQA------------------GPTGVELAGEIAVDFPEKKVT  149 (274)
Q Consensus        98 ~~~~~~~li~a~G~~~~~~~-------~~~~~~~---~~~~------------------g~~~~e~a~~l~~~~~~~~v~  149 (274)
                      ..+.++.+|+|||..+..+.       ...+.+.   ..+.                  +. +++++..+.  ..+..+ 
T Consensus       161 g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg-~~~~ae~~~--~~G~~~-  236 (472)
T 2e5v_A          161 LVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE-VFLLTETLR--GEGAQI-  236 (472)
T ss_dssp             EECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC-CEECCTHHH--HTTCEE-
T ss_pred             CeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC-ceeeehhhc--CCceEE-
Confidence            35779999999998754322       1122211   0000                  11 344444443  335555 


Q ss_pred             EEeCCCccCCcCChhH--------HHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEe-ecEEEEcccCCCC
Q 023975          150 LVHKGSRLLEFIGPKA--------GDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN-ADCHFLCTGKPVG  220 (274)
Q Consensus       150 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~-~d~vv~a~G~~~~  220 (274)
                      +..+.+++.+..++..        ...+.+.+++.|. ++.+..  .+   +. +      .+.++ .+.++.+.|..|+
T Consensus       237 v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~--~~---~~-~------~~~~~~~~~~~~~~G~dp~  303 (472)
T 2e5v_A          237 INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS--KI---ED-F------ERKFPVVAKYLARHGHNYK  303 (472)
T ss_dssp             EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT--TC---TT-H------HHHCHHHHHHHHHTTCCTT
T ss_pred             ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc--ch---HH-H------HHHhHHHHHHHHHhCcCcc
Confidence            5666677765544433        5566666666553 222111  01   00 0      01232 4777888899987


Q ss_pred             chhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccC
Q 023975          221 SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~  261 (274)
                       ++++.....  ....|+|.||.+++| +.|+|||+|||++
T Consensus       304 -~~i~v~p~~--~~~~GGI~vd~~~~t-~ipgLyAaGd~a~  340 (472)
T 2e5v_A          304 -VKIPIFPAA--HFVDGGIRVNIRGES-NIVNLYAIGEVSD  340 (472)
T ss_dssp             -SCEECEEEE--EEESCEEECCTTCBC-SSBTEEECGGGEE
T ss_pred             -cceEeehhh--ceeCCCeEECCCCcc-ccCCEEecchhcc
Confidence             555433221  223689999999999 8999999999987

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.43  E-value=1.3e-12  Score=112.49  Aligned_cols=57  Identities=9%  Similarity=-0.089  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.+++++ .|++.+|+++.||.||++++...
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            3578888899999999999999999999888765 48899999999999999987643

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.41  E-value=8.3e-13  Score=109.53  Aligned_cols=56  Identities=9%  Similarity=-0.082  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|.+.+| ++.||.||+|+|...
T Consensus       154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhH
Confidence            45778888999999999999999999988777788888887 799999999999754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.40  E-value=5.3e-13  Score=110.15  Aligned_cols=64  Identities=6%  Similarity=-0.123  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCC--cEEeecEEEEcccCCCCchhhccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG--DTINADCHFLCTGKPVGSDWLKDT  227 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~  227 (274)
                      ..+...+.+.+++.|++++++++|++++.+++. +.+.+.+|  .++.||.||+|+|... ..++...
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s-~~l~~~~  216 (369)
T 3dme_A          150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA-PGLARRI  216 (369)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH-HHHHHTE
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch-HHHHHHh
Confidence            457888889999999999999999999887655 77888887  4899999999999764 3444433

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.36  E-value=4.3e-12  Score=105.53  Aligned_cols=70  Identities=19%  Similarity=0.091  Sum_probs=53.7

Q ss_pred             eEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          147 KVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       147 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ...++......+.  ...+...+.+.+++.|++++.+++|++++.+++.+.+.+++| ++.||.||+|+|...
T Consensus       136 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          136 YNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             EEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             ceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            4455554433222  245778888999999999999999999988777777777666 799999999999764

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.35  E-value=1.4e-11  Score=104.07  Aligned_cols=57  Identities=21%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCc---eeeeeccCCCcee-EECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGE---RVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~---~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|+++++++   +|+++..+++.+. |++.+|+++.||.||+|+|...
T Consensus       161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            3577888899999999999999   9999987777666 8899998899999999999753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.34  E-value=1e-11  Score=103.00  Aligned_cols=56  Identities=9%  Similarity=-0.153  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.+.+.+| ++.||.||+|+|...
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence            45778888889999999999999999988777777777777 799999999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.34  E-value=1.8e-11  Score=108.94  Aligned_cols=57  Identities=5%  Similarity=-0.006  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|.+.+|+++.||.||+|+|...
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            457888888899999999999999999988888888888888899999999999753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.34  E-value=6e-12  Score=106.61  Aligned_cols=57  Identities=14%  Similarity=0.196  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++++++|+++..+++. +.|.+.+|+++.||.||+|+|..+
T Consensus       134 ~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          134 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            457788888899999999999999999866655 678888887899999999999765

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.33  E-value=2.5e-12  Score=102.36  Aligned_cols=97  Identities=13%  Similarity=-0.005  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECC---------CC-----cEEeecEEEEcccCCCCch-----
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTS---------TG-----DTINADCHFLCTGKPVGSD-----  222 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~---------~g-----~~~~~d~vv~a~G~~~~~~-----  222 (274)
                      .+...+.+.+.+ .|++++.+++|+++..+++.+ .+.+.         +|     .++.||.||+|+|..+...     
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~  199 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK  199 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence            455666676765 699999999999998665543 34331         22     5799999999999766532     


Q ss_pred             hhcccccccccCCCCcEEeCC-------CccccCCCCeEEeccccC
Q 023975          223 WLKDTILKDSLDTHGMLMVDE-------NLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       223 ~~~~~~~~~~~~~~g~~~v~~-------~~~~~~~~~i~~~Gd~~~  261 (274)
                      .+...++...+.+...+.++.       ..++ ..|++|++|+++.
T Consensus       200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~-~~p~i~a~G~~~~  244 (284)
T 1rp0_A          200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTRE-VVPGMIVTGMEVA  244 (284)
T ss_dssp             HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEE-EETTEEECTHHHH
T ss_pred             HhhhccCCCCcCCcCCchhhhhhHHHhhcccc-ccCCEEEEeeehh
Confidence            111112112222333333332       2334 5799999999873

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.32  E-value=1.7e-11  Score=102.26  Aligned_cols=58  Identities=7%  Similarity=-0.095  Sum_probs=48.4

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccC----CCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVS----EGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~----~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ...+.+.+.+.+++.|+++++++.|+++..+    ++.+.+.+++| ++.||.||+|+|..+.
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSM  169 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSC
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccC
Confidence            4567788888899999999999999999865    45677777766 7999999999998773

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.32  E-value=6.2e-13  Score=114.68  Aligned_cols=52  Identities=13%  Similarity=-0.042  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.+++.|+++.++++|++|..+++  .+++.+|+++.||.||+++..
T Consensus       223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNK--TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHTSCGGGEEESGGGCEEEEETTTT--EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHhcCeeeecceEEEEEEccCC--EEEEcCCCEEECCEEEECCCH
Confidence            4667777777888999999999999987655  466789999999999999763

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.31  E-value=4.6e-12  Score=105.18  Aligned_cols=56  Identities=11%  Similarity=-0.147  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|++++.+++.+. |.+.+| ++.||.||+|+|...
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            45677888889999999999999999987777665 777777 799999999999764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.29  E-value=1.9e-11  Score=102.10  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHhC-CcEEEcCceeeeeccCCCce--eEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++. |++++.+++|++++.+++.+  .+++.+|+++.+|.||.|+|....
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            4677888888887 99999999999998887777  888889989999999999998654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.29  E-value=5.7e-11  Score=105.87  Aligned_cols=57  Identities=5%  Similarity=-0.045  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc-EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD-TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~-~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|.+.+|+ ++.||.||+|+|...
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            457888888899999999999999999988888888888887 899999999999753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.28  E-value=7.4e-12  Score=105.40  Aligned_cols=62  Identities=11%  Similarity=0.085  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.+++.+. |++ +|+++.||.||+|+|......++.
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHHHHhcC
Confidence            45788889999999999999999999988777665 555 477899999999999755444443

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.28  E-value=7.1e-12  Score=105.41  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=51.1

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      ...+.+.+.+.+++.|++|+++++|++|+.+++.+ | +.+|+++.||.||+|+|......++.
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll~  249 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLIG  249 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhcC
Confidence            35688889999999999999999999999877777 5 45677899999999999765445543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.28  E-value=2.8e-11  Score=101.02  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++++++|++++.+++.+.+.+++| ++.||.||+|+|...
T Consensus       154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence            4667788888889999999999999987777777777665 799999999999753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.27  E-value=5.5e-12  Score=108.52  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ..+.+.+.+.+++.|++++.+++|++++.+++.+ .|.+.+|+++.||.||+|+|..+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4567778888888999999999999998776654 488889999999999999999874

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.27  E-value=1.2e-11  Score=106.86  Aligned_cols=45  Identities=13%  Similarity=-0.062  Sum_probs=39.3

Q ss_pred             hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          175 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..|++++++++|++|+.+++.+.|.+.+|+++.||.||+|++...
T Consensus       224 ~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            347899999999999988888888889998999999999998643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.25  E-value=1.4e-10  Score=96.83  Aligned_cols=54  Identities=9%  Similarity=-0.097  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+  .|++++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|....
T Consensus       101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          101 IYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             HHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            444444444  489999999999998888888899999999999999999997643

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.24  E-value=1e-10  Score=97.96  Aligned_cols=55  Identities=16%  Similarity=0.174  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+.+  ++++.+++|++++.+++.+.+++.+|+++.+|.||.|.|....
T Consensus       128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence            366677777766  8999999999999888888899999999999999999997544

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.22  E-value=3.6e-11  Score=100.50  Aligned_cols=55  Identities=16%  Similarity=-0.067  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++. ..+.+.+| ++.+|.||+|+|...
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            57778888899999999999999999876654 45777777 799999999999754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.22  E-value=2e-11  Score=104.10  Aligned_cols=40  Identities=23%  Similarity=0.191  Sum_probs=36.8

Q ss_pred             cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ++|+++++|++|+.+++++.|++++|+++.||.||+|++.
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            7999999999999888888899999988999999999985

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.22  E-value=2.4e-11  Score=102.14  Aligned_cols=56  Identities=18%  Similarity=0.049  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce--eEECCCCc--EEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD--TYLTSTGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~--~v~~~~g~--~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++..  .+.+.+|+  ++.||.||.|+|...
T Consensus       107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            466778888888899999999999998766653  45667887  799999999999764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.22  E-value=1.9e-10  Score=95.38  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++.|++++.+++|++++. + . .+++.+|+++.+|.||.|+|..+.
T Consensus       108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          108 HLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEETTSCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEECCCCEEEcCEEEECCCccHH
Confidence            4677888888889999999999999987 3 3 788888989999999999998654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.21  E-value=9.5e-11  Score=100.12  Aligned_cols=55  Identities=16%  Similarity=0.037  Sum_probs=46.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.++++ +.|.+. +.++.||.||+|++..
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-DSSLEADHVISAIPAS  289 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-SCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-CeEEEcCEEEECCCHH
Confidence            357888999999999999999999999877665 677664 5579999999999853

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.21  E-value=1.8e-10  Score=95.20  Aligned_cols=55  Identities=16%  Similarity=0.042  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+.+.+| ++.||.||+|+|...
T Consensus       150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccH
Confidence            5777888888999999999999999987777777888777 499999999999653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.17  E-value=3.3e-11  Score=98.49  Aligned_cols=42  Identities=17%  Similarity=0.090  Sum_probs=38.0

Q ss_pred             CCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          176 KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       176 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .|++++++++|++|+.+++.+.|.+.+|+++.+|.||+|++.
T Consensus       122 ~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          122 SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCH
Confidence            489999999999999888888899888888899999999984

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.17  E-value=1.1e-10  Score=101.89  Aligned_cols=56  Identities=16%  Similarity=0.025  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCceeEECC-CC--cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTS-TG--DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~-~g--~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|+++..+ ++.+.|.+. +|  .++.||.||.|+|...
T Consensus       129 ~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          129 EFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            46777888888899999999999999875 445677776 66  5799999999999754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.17  E-value=4.7e-11  Score=99.32  Aligned_cols=56  Identities=11%  Similarity=-0.061  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeE-E-CCCC--cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-L-TSTG--DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~-~~~g--~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+.+.|++++.+++++.+..+++.+.. . ..++  .++.||.||-|.|...
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            35667778888899999999999998877665432 2 2233  3689999999999653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.17  E-value=2.1e-10  Score=99.38  Aligned_cols=56  Identities=11%  Similarity=-0.050  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCC----ceeEECCCC---cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG----SDTYLTSTG---DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~----~~~v~~~~g---~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++    .+.+++.++   .++.||.||.|.|...
T Consensus       121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            4677788888889999999999999998777    777777766   6899999999999764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.15  E-value=7.5e-11  Score=99.99  Aligned_cols=61  Identities=20%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeecc---------------CCCce-eEECCCCcEE--eecEEEEcccCCCCchhhc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSV---------------SEGSD-TYLTSTGDTI--NADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~---------------~~~~~-~v~~~~g~~~--~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+...+.+.+++.|++++.+++|++++.               +++.+ .|.+.+| ++  .||.||+|+|... ..++.
T Consensus       182 ~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s-~~l~~  259 (448)
T 3axb_A          182 KVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS-NRLLN  259 (448)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH-HHHHG
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH-HHHHH
Confidence            6788889999999999999999999986               44443 5777777 58  9999999999764 33444


Q ss_pred             c
Q 023975          226 D  226 (274)
Q Consensus       226 ~  226 (274)
                      .
T Consensus       260 ~  260 (448)
T 3axb_A          260 P  260 (448)
T ss_dssp             G
T ss_pred             H
Confidence            3

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.14  E-value=1e-10  Score=99.34  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECC---CCc--EEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTS---TGD--TINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~---~g~--~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++.|++++.+++|+++..+++.+. |++.   +|+  ++.||.||.|+|....
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            3667788888889999999999999987666543 4443   675  7999999999997543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.13  E-value=1.6e-10  Score=100.58  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC--CCC-cEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT--STG-DTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g-~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|++++.+++.+.+++  .+| +++.||.||.|.|...
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            34667788888888999999999999998888888877  678 6899999999999764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.12  E-value=1.6e-10  Score=100.49  Aligned_cols=57  Identities=12%  Similarity=-0.040  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCC---C--cEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|+++..+++|+++..+++.+ .|.+.+   |  .++.||.||+|+|...
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            4577788888899999999999999998876653 455432   3  4799999999999754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.11  E-value=2.6e-10  Score=96.73  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      ++||+|||||++||+||+.|+ .|++|+|+|+++.+|+...
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~   45 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence            479999999999999999998 4999999999998886543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.11  E-value=3.9e-10  Score=96.67  Aligned_cols=56  Identities=11%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc---EEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.++++++++.+++.+.+++.+++   ++.+|.||.|.|...
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            36677888888889999999999999988888888877764   799999999999764

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.10  E-value=1.7e-09  Score=91.30  Aligned_cols=56  Identities=9%  Similarity=-0.107  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeecc-CCCc-eeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSV-SEGS-DTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~-~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.|++++++++|++|.. +++. ..|++.+|+++.||.||+++++.
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            46889999999999999999999999987 4444 56888889899999999999987

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.10  E-value=1.1e-09  Score=91.30  Aligned_cols=57  Identities=7%  Similarity=-0.119  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCC-CceeEEC-CCCc--EEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLT-STGD--TINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~-~~g~--~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+.+.|++++.+++|++++.++ +.+.+++ .+|+  ++.+|.||.|.|....
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            356677777878899999999999998753 4567776 6887  7999999999997654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.08  E-value=9.9e-11  Score=106.48  Aligned_cols=56  Identities=23%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|++++.+++.+ .|.+++| ++.||.||+|+|...
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccch
Confidence            3578888899999999999999999998766654 4677777 799999999999764

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.08  E-value=5.2e-10  Score=96.37  Aligned_cols=56  Identities=18%  Similarity=0.041  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCc---eeEECCCCc--EEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYLTSTGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~~~g~--~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++.   +.+...+|+  ++.||.||.|+|...
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            46777888888899999999999999887664   345566774  899999999999754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.07  E-value=2.9e-10  Score=97.53  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc---EEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD---TINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+++|++++.+++.+.+++.+++   ++.+|.||.|.|...
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence            36677888888889999999999999988888888877764   799999999999764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.07  E-value=6.8e-10  Score=92.85  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceee---------eeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVN---------LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~---------~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|+         +++.+++.+.|.+.+| ++.||.||+|+|...
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            3577888888999999999999999         8887766666766666 799999999999764

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.07  E-value=8.3e-10  Score=96.36  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEECC--CCc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS--TGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~--~g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|+++..++ +.+ .++..  +|+  ++.+|.||+|+|...
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            3567788888889999999999999998765 443 24433  665  689999999999643

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.06  E-value=1.5e-09  Score=90.57  Aligned_cols=54  Identities=13%  Similarity=-0.036  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +.+.+.+.+.  +++++.+++|++++.+++.+.+++.+|+++.+|.||.|.|....
T Consensus       130 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          130 LRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             HHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             HHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            4444444443  36889999999998887788888999988999999999997543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.05  E-value=4.6e-10  Score=97.81  Aligned_cols=57  Identities=25%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC--CCCc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--~~g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|+++..++ +.+ .|++  .+|+  ++.+|.||+|+|...
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            3467788888889999999999999998766 543 3443  3675  689999999999644

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.05  E-value=1e-09  Score=94.49  Aligned_cols=56  Identities=16%  Similarity=0.060  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccC-CCce-eEECC-CCc--EEeec-EEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYLTS-TGD--TINAD-CHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~-~g~--~~~~d-~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++++++|+++..+ ++.+ .|+.. +++  ++.|| .||+|+|-..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            67888889999999999999999999876 4443 34433 333  68996 9999999544

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.05  E-value=1.2e-10  Score=92.19  Aligned_cols=40  Identities=25%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      |..||+||||||+||+||+.|+ +|++|+||||.+.+|+..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~   41 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRM   41 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            3479999999999999999998 499999999999887543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.03  E-value=1.1e-09  Score=93.76  Aligned_cols=58  Identities=7%  Similarity=-0.075  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccC---CCceeEEC--C-CC--cEEeecEEEEcccCCCCc
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLT--S-TG--DTINADCHFLCTGKPVGS  221 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~---~~~~~v~~--~-~g--~~~~~d~vv~a~G~~~~~  221 (274)
                      .+...+.+.+++.|++++.+++|++++.+   ++.+.+.+  . +|  +++.+|.||.|+|..+..
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            46677888888899999999999999864   34556665  4 56  479999999999986654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.02  E-value=2.6e-09  Score=91.75  Aligned_cols=57  Identities=18%  Similarity=0.057  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC---CCCc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++.+++|+++..+++.+.|.+   .+|+  ++.||.||+|+|...
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            35777888888999999999999999987665556665   3565  799999999999764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.00  E-value=7.3e-10  Score=96.40  Aligned_cols=138  Identities=14%  Similarity=0.137  Sum_probs=76.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC-Cceeeccc--e---------------ee--------------ec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWAS--L---------------RA--------------MV   58 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~-~~g~~~~~--~---------------~~--------------~~   58 (274)
                      ..+||+|||||+||++||+.|+ .|.+|+|+|+.. .+|.....  .               ..              .+
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            3589999999999999999998 499999999974 22210000  0               00              00


Q ss_pred             CCc--cccce---eee---c----ccc---ccccEEEEEeeEEEe--cC---eEEeCCCeEEecCEEEEccCCCCCCChh
Q 023975           59 EPS--FGKRS---VIN---H----TDY---LVNGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        59 ~~~--~~~~~---~~~---~----~~~---~~~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~li~a~G~~~~~~~~  118 (274)
                      ...  .....   ...   +    .+.   ..+++++...+..+.  ..   .|.+.+|..+.++.+|+|+|..+..+..
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence            000  00000   000   0    001   125666666665553  22   4567788889999999999997543321


Q ss_pred             ---HHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEe
Q 023975          119 ---RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVH  152 (274)
Q Consensus       119 ---~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~  152 (274)
                         ....-... ++.++.+++..+.  ..|.+++.+.
T Consensus       187 ~G~~~~~~gri-Gg~~a~eLA~~L~--~lG~~v~~~~  220 (651)
T 3ces_A          187 IGLDNYSGGRA-GDPPSIPLSRRLR--ELPLRVGRLK  220 (651)
T ss_dssp             CC--------------CCHHHHHHH--TTTCCEEEEC
T ss_pred             cCcccCCCCCc-cchhhhHHHHHHH--hcCCeEEEec
Confidence               11000112 2567788888887  5577776653

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.99  E-value=2.6e-10  Score=97.94  Aligned_cols=56  Identities=7%  Similarity=-0.070  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHhCC-cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ..+.+.+.+.+++.| ++|+++++|++|+.+++.+.|.+.+|+++.||.||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            357778888888888 99999999999988777888888888889999999999964

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.96  E-value=2.6e-09  Score=89.42  Aligned_cols=56  Identities=13%  Similarity=0.027  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHh-CC-cEEEcCceeeeeccCCCceeEECCC---C--cEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~~  220 (274)
                      .+.+.+.+.+++ .| ++++.+++|++++. ++.+.+.+.+   |  +++.||.||.|.|....
T Consensus       108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            466677777765 35 68999999999987 6677777665   7  57999999999997543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.95  E-value=2.8e-09  Score=92.41  Aligned_cols=57  Identities=21%  Similarity=0.301  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ..+...+.+.+++.|++++.+ +|++++.++++  ..|.+.+|+++.+|.||.|+|....
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            357778888888899999999 89999765443  4677888888999999999997543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.93  E-value=3.1e-09  Score=92.26  Aligned_cols=55  Identities=24%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhC-CcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++. |++++.+ +|++++.++++  ..|.+.+|+++.||.||.|+|...
T Consensus       195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            4777888888888 9999999 99999765443  567888888899999999999754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.92  E-value=8.1e-09  Score=86.26  Aligned_cols=44  Identities=14%  Similarity=0.069  Sum_probs=36.7

Q ss_pred             CCcEEEcCceeeeeccCC-CceeEECCCCcEEeecEEEEcccCCC
Q 023975          176 KKVDVKLGERVNLDSVSE-GSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       176 ~gv~i~~~~~v~~i~~~~-~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+..++.++++++++..+ +.+.+.++||+++++|.||-|-|...
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS  166 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence            356788999999997644 46889999999999999999999643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.91  E-value=1.2e-08  Score=88.97  Aligned_cols=57  Identities=19%  Similarity=0.196  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC-Cce-eEEC--CCCc--EEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT--STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~--~~g~--~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++++++|+++..++ +.+ .|+.  .+|+  ++.+|.||+|+|..+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            3567788888889999999999999997655 443 3443  3664  689999999999654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.90  E-value=7.7e-09  Score=90.32  Aligned_cols=57  Identities=16%  Similarity=-0.004  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ce-eEECC------CC---------cEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS------TG---------DTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~------~g---------~~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+++.|++++.++.++++..+++ .+ .|.+.      +|         .++.||.||.|+|....
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence            4777888888889999999999999986653 34 36654      33         58999999999998653

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.90  E-value=9.2e-09  Score=89.50  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+++ .|+++.. ..|+.+..+++.+. |.+.+|+++.||.||+|+|..++
T Consensus       118 ~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             HHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            466777888887 4999965 48888876666554 78888889999999999997654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.90  E-value=2.5e-09  Score=91.27  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=36.0

Q ss_pred             cEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          178 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       178 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      ++|+++++|++|+.+++.+.|++.+| ++.||.||+|++..
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~  288 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHP  288 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHH
Confidence            79999999999988888888999889 79999999999853

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.89  E-value=3.6e-09  Score=91.52  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~g   48 (274)
                      ..+||+|||||++||++|+.|++|.+|+|+||.+..+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~G~~V~vlEk~~~~~   43 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTE   43 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC
T ss_pred             CCCCEEEECccHHHHHHHHHHhcCCcEEEEECCCCCC
Confidence            3589999999999999999997799999999988765

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.87  E-value=1.6e-08  Score=87.81  Aligned_cols=53  Identities=9%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC---C--cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---G--DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g--~~~~~d~vv~a~G~~~  219 (274)
                      .+.+.+.+.+++.   ++.++++++++.+++.+.+++.+   |  +++.||.||.|.|...
T Consensus       139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S  196 (549)
T 2r0c_A          139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASS  196 (549)
T ss_dssp             HHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCc
Confidence            3555667777665   89999999999888877777654   6  4799999999999764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.86  E-value=1.5e-08  Score=88.58  Aligned_cols=56  Identities=13%  Similarity=-0.003  Sum_probs=42.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCce-eEE---CCCCc--EEeecEEEEcccCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      ..+...+.+.+++.|+++++++.|+++..+ ++.+ .+.   ..+|+  .+.|+.||+|+|-.
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            356677888888899999999999999865 4433 343   25665  68999999999953

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.84  E-value=2.7e-09  Score=92.53  Aligned_cols=34  Identities=32%  Similarity=0.339  Sum_probs=31.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..+||+|||||+||++||+.|++ |.+|+|+|++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35899999999999999999985 99999999974

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.84  E-value=8.4e-09  Score=90.28  Aligned_cols=54  Identities=15%  Similarity=0.019  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhCC-cEEEcCceeeeeccCCCce-eE--E-CCCCc--EEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSD-TY--L-TSTGD--TINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~-~v--~-~~~g~--~~~~d~vv~a~G~  217 (274)
                      .+...+.+.+++.| ++++.++.++++..+++.+ .+  . +.+|+  .+.|+.||+|+|.
T Consensus       135 ~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            46677778788888 9999999999998765532 23  2 36776  7899999999995

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.82  E-value=1e-08  Score=88.28  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|++++.+ +|++++.++++  ..|.+.+|+++.+|.||.|+|...
T Consensus       174 ~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          174 EVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            46777888888899999999 89999865444  567888888899999999999754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.79  E-value=4.7e-09  Score=92.55  Aligned_cols=55  Identities=15%  Similarity=0.026  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE---CCCCc--EEeecEEEEcccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP  218 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~  218 (274)
                      .+...+.+.+++.|++++.++.|.++..+++.+ .+.   +.+|+  .+.|+.||+|||-.
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            466677777888899999999999997655532 332   35675  58999999999953

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.78  E-value=3.5e-08  Score=88.48  Aligned_cols=49  Identities=16%  Similarity=0.094  Sum_probs=40.8

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+. .|++|+++++|++|+.+++++.|++.+|+++.||.||+|++.
T Consensus       535 ~l~~aLa-~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          535 VIIEKLA-EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             HHHHHHH-TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             HHHHHHH-hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            3334343 478999999999999888888899999989999999999863

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.77  E-value=5.4e-09  Score=90.34  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHh-CCcEEEcCceeeeeccCCCc--eeEECCCCcEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++ .|++++.+ .|++++.++++  ..+.+.+|+++.+|.||.|+|...
T Consensus       176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            467778888888 89999999 59999765443  367777877899999999999754

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.75  E-value=1.9e-08  Score=88.05  Aligned_cols=56  Identities=9%  Similarity=-0.064  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEEC---CCCc--EEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g~--~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+.+.|++++.++.+.++..+++.+ .+..   .+|+  .+.|+.||+|||-..
T Consensus       156 ~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          156 SLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            466777788888999999999999998665533 3332   4665  689999999999543

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.73  E-value=1e-07  Score=84.27  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHhCCc--EEEcCceeeeeccCCC----ceeEECC------CC--cEEeecEEEEcccCCC
Q 023975          164 KAGDKTRDWLISKKV--DVKLGERVNLDSVSEG----SDTYLTS------TG--DTINADCHFLCTGKPV  219 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~~----~~~v~~~------~g--~~~~~d~vv~a~G~~~  219 (274)
                      .+...+.+.+++.|+  +++.++++++++.+++    .+.+++.      +|  +++.||.||.|.|...
T Consensus       142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S  211 (639)
T 2dkh_A          142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS  211 (639)
T ss_dssp             HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence            466778888888876  9999999999987652    4666554      45  4799999999999764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.73  E-value=6.1e-09  Score=84.43  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=34.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~   50 (274)
                      .+||+|||||||||+||++|+   .|++|+||||.+.+|+.
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~  105 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCce
Confidence            479999999999999999995   39999999999988854

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.72  E-value=4.6e-08  Score=78.41  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~g   48 (274)
                      .+||+|||||++|+++|+.|+ .  |++|+|+|+.+..|
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            359999999999999999997 4  99999999988776

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.62  E-value=2.8e-08  Score=84.21  Aligned_cols=56  Identities=9%  Similarity=-0.204  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++++++|++|..+  ++.+ .|.+ +|+++.||.||+++|..+
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP  300 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc
Confidence            468889999999999999999999999876  5544 4555 578899999999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.58  E-value=4.3e-08  Score=80.48  Aligned_cols=44  Identities=25%  Similarity=0.493  Sum_probs=37.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC-CCceeeccce
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK-EYFEITWASL   54 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~-~~~g~~~~~~   54 (274)
                      ...+||+|||||++||++|+.|+ .|++|+|+|++ +.+|+.+...
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            34689999999999999999998 49999999999 8888765433

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.57  E-value=4.9e-08  Score=82.04  Aligned_cols=41  Identities=24%  Similarity=0.372  Sum_probs=36.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCceeecc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITWA   52 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~~g~~~~   52 (274)
                      +.+||+|||||++||+||+.|+ .| ++|+|+|+++.+|+...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~   47 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCH   47 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCccc
Confidence            4589999999999999999998 48 99999999999886543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.56  E-value=5.8e-08  Score=80.91  Aligned_cols=42  Identities=17%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeeccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITWAS   53 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~~~   53 (274)
                      .++||+|||||++||++|+.|+ . |++|+|+|+++.+|+....
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeee
Confidence            3589999999999999999997 5 8999999999999876544

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.56  E-value=4.9e-08  Score=83.90  Aligned_cols=40  Identities=33%  Similarity=0.420  Sum_probs=35.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      ..+||+|||||++||++|+.|++ |++|+|+|+.+.+|+..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~   52 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   52 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence            45899999999999999999985 99999999999988654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.55  E-value=6.1e-08  Score=80.19  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccce
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL   54 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~   54 (274)
                      ...+||+|||||++|+++|+.|+ .|.+|+|+|+.+.+|+.+...
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~   71 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDC   71 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCcccee
Confidence            34689999999999999999997 599999999999998766543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.53  E-value=6.1e-08  Score=79.72  Aligned_cols=38  Identities=32%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      |.+++||+|||||++|+++|++|+ +|++|+|+||....
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            345689999999999999999997 59999999997643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.52  E-value=4.2e-08  Score=84.62  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=35.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCCceeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEYFEITW   51 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~~g~~~   51 (274)
                      .+||+|||||++||+||+.|+ .| ++|+|+|+++.+|+..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCce
Confidence            479999999999999999998 58 9999999999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.51  E-value=8.6e-08  Score=82.07  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC---cEEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.+.+  .+|+++++|++|+.+++++.|++.+|   +++.||.||+|++.
T Consensus       240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPP  294 (489)
T ss_dssp             HHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCH
Confidence            355555555532  78999999999998888888887776   67999999999974

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.50  E-value=8e-08  Score=81.99  Aligned_cols=52  Identities=13%  Similarity=0.045  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKP  218 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~  218 (274)
                      .+.+.+.+.+   |++|+++++|++|+.+++.+.|++   .+|+++.||.||+|++..
T Consensus       239 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          239 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             HHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHH
Confidence            3555555554   679999999999998777788887   678889999999999854

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.48  E-value=6.1e-08  Score=81.60  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+++||+||||||+|+++|+.|+ +|++|+|+|+.+
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            35589999999999999999998 599999999986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.47  E-value=1.1e-07  Score=81.24  Aligned_cols=44  Identities=23%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCCCceeeccc
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEYFEITWAS   53 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~~~g~~~~~   53 (274)
                      +.+++||+|||||++||++|++|++ | .+|+|+|+.+.+|+.+..
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            3456899999999999999999974 7 799999999999876554

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.44  E-value=1.7e-07  Score=77.23  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~   52 (274)
                      +||+|||||++|+++|+.|++ |++|+|+|+++.+|+...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~   41 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceE
Confidence            699999999999999999985 999999999998886543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.37  E-value=2.8e-07  Score=76.35  Aligned_cols=40  Identities=20%  Similarity=0.477  Sum_probs=36.0

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS   53 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~   53 (274)
                      +||+|||||++|+++|+.|++ |++|+|+|+++.+|+.+..
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            799999999999999999985 9999999999999876543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.36  E-value=3.4e-07  Score=77.11  Aligned_cols=57  Identities=9%  Similarity=-0.097  Sum_probs=48.1

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++++++++|++|..+++.+..+..+|+++.||.||+|+|..+
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCc
Confidence            468888999899999999999999999877766554445788899999999999875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.35  E-value=2.8e-07  Score=74.35  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g   48 (274)
                      .+||+|||||++|+++|+.|++   |++|+|+|+...++
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            5899999999999999999973   99999999988765

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.33  E-value=4e-07  Score=78.09  Aligned_cols=40  Identities=30%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      ..+||+|||||++||++|+.|++ |++|+|+|+.+.+|+..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~   72 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   72 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCce
Confidence            45899999999999999999985 99999999999988654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.30  E-value=4e-07  Score=74.47  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=35.7

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|++++. ++|++++..+           .+.||.||+|+|...
T Consensus       142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s  186 (351)
T 3g3e_A          142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWA  186 (351)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcCh
Confidence            45778888999999999998 8888775332           267999999999754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.28  E-value=4e-07  Score=79.33  Aligned_cols=57  Identities=9%  Similarity=-0.190  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECC---CC--cEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTS---TG--DTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~---~g--~~~~~d~vv~a~G~~~  219 (274)
                      ..+...+.+.+++.|+++..+++|+++..+++.+ .|++.   +|  .++.||.||+|+|...
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws  250 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV  250 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence            4566777788889999999999999998766543 35432   33  3799999999999764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.24  E-value=7.3e-07  Score=73.79  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~~   47 (274)
                      +||+|||||++|+++|..|+ .  |++|+|+||.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            48999999999999999997 5  9999999998765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.18  E-value=1.4e-06  Score=71.06  Aligned_cols=34  Identities=35%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++||+|||||++|+.+|+.|+ +|++|+|+|+.+.
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            379999999999999999998 5999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.17  E-value=6.8e-06  Score=69.78  Aligned_cols=83  Identities=13%  Similarity=0.105  Sum_probs=59.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecCe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENE   91 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (274)
                      .++|+|||+|.+|+-+|..|++ |.+|+++++.+.+-..          .+           ..++.+. ..+..+....
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~----------~~-----------~~~V~~~-~~V~~i~~~~  254 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY----------KW-----------PENWDER-PNLVRVDTEN  254 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC----------CC-----------CTTEEEC-SCEEEECSSE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC----------CC-----------CCceEEc-CCeEEEeCCE
Confidence            4789999999999999999974 9999999987653210          00           0122222 2233344456


Q ss_pred             EEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           92 VLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        92 v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      +.+.+|.++.+|.+|+|||..|..|-
T Consensus       255 V~~~dG~~i~~D~Vi~atG~~p~~~~  280 (464)
T 2xve_A          255 AYFADGSSEKVDAIILCTGYIHHFPF  280 (464)
T ss_dssp             EEETTSCEEECSEEEECCCBCCCCTT
T ss_pred             EEECCCCEEeCCEEEECCCCCCCCCC
Confidence            77889989999999999999877654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.17  E-value=1.3e-06  Score=74.45  Aligned_cols=54  Identities=15%  Similarity=0.047  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHhC--------CcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISK--------KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~--------gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.+.+.        |++|+++++|++|+.+++.+.|++.+|+++.||.||+|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4556666655443        67999999999999888888899999989999999999985

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.14  E-value=1.9e-06  Score=76.50  Aligned_cols=41  Identities=37%  Similarity=0.602  Sum_probs=36.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      ...+||+|||||++||++|+.|+ +|++|+|+|+.+.+|+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~  146 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  146 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            34589999999999999999997 599999999999888653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.13  E-value=1.5e-06  Score=76.44  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             hCCcEEEcCceeeeeccCCC--c-eeEECC---CCc--EEeecEEEEcccCCCCchhhccccccccc
Q 023975          175 SKKVDVKLGERVNLDSVSEG--S-DTYLTS---TGD--TINADCHFLCTGKPVGSDWLKDTILKDSL  233 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~  233 (274)
                      +.|+++++++.|++|..+++  . ..|++.   +|+  ++.||.||+|+|..+++.++...+++...
T Consensus       272 ~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~  338 (623)
T 3pl8_A          272 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLG  338 (623)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCCS
T ss_pred             CCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCccc
Confidence            34899999999999986543  2 344442   454  78999999999999988888877765543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.12  E-value=2.1e-06  Score=77.66  Aligned_cols=40  Identities=38%  Similarity=0.626  Sum_probs=35.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~   51 (274)
                      ..++|+|||||++||++|+.|+ +|++|+|+|+.+.+|+..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~  317 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV  317 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence            4589999999999999999997 599999999999888653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.09  E-value=4.1e-06  Score=70.56  Aligned_cols=93  Identities=19%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..++ .|.+|+++|+.+.+....       .+...    ....+.+  .++++... .+..++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~-------d~~~~----~~~~~~l~~~gV~i~~~~~v~~~~  215 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM-------DADMN----QPILDELDKREIPYRLNEEINAIN  215 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS-------CGGGG----HHHHHHHHHTTCCEEESCCEEEEE
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc-------cchhH----HHHHHHhhccceEEEeccEEEEec
Confidence            358999999999999999997 499999999987653111       01100    0000111  13444333 233456


Q ss_pred             cCeEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 ENEVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ...+.+++++.+.+|.+++|+|..|...
T Consensus       216 ~~~v~~~~g~~~~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          216 GNEITFKSGKVEHYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             TTEEEETTSCEEECSEEEECCCEEESCG
T ss_pred             CCeeeecCCeEEeeeeEEEEeceecCcH
Confidence            6678889999999999999999887654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.06  E-value=2.7e-05  Score=65.76  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCc-EEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEE--e
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SAD-VTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI--T   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~-v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   88 (274)
                      .++|+|||+|.+|+-+|..|++ +.+ |+++++.+.+      +    .    .          .++. .......+  +
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~------l----~----~----------~~i~-~~~~v~~~~~~  266 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD------I----Q----N----------ESLQ-QVPEITKFDPT  266 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS------C----B----C----------SSEE-EECCEEEEETT
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc------C----C----C----------CCeE-EecCeEEEecC
Confidence            4789999999999999999985 888 9999998654      0    0    0          0111 11122233  2


Q ss_pred             cCeEEeCCCeE-EecCEEEEccCCCCCCCh
Q 023975           89 ENEVLTAEGRR-VVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~~v~~~~~~~-~~~~~li~a~G~~~~~~~  117 (274)
                      ...+.+.+|.. +.+|.+|+|||..|..|-
T Consensus       267 ~~~v~~~dG~~~~~~D~vi~atG~~~~~~~  296 (447)
T 2gv8_A          267 TREIYLKGGKVLSNIDRVIYCTGYLYSVPF  296 (447)
T ss_dssp             TTEEEETTTEEECCCSEEEECCCBCCCCCC
T ss_pred             CCEEEECCCCEeccCCEEEECCCCCcCCCC
Confidence            34677888876 689999999999887664

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.06  E-value=2.3e-05  Score=63.85  Aligned_cols=91  Identities=10%  Similarity=-0.119  Sum_probs=71.6

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC---------------------CcC--C---------hhHHHHHHHH
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------------EFI--G---------PKAGDKTRDW  172 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~---------------------~~~--~---------~~~~~~~~~~  172 (274)
                      .+++|..|+.+|..|.  ..+.+++++.+.+.+.                     +..  .         ..+.+.+.+.
T Consensus         8 IIG~G~aGl~~A~~l~--~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (357)
T 4a9w_A            8 VIGGGQSGLSAGYFLR--RSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLAQY   85 (357)
T ss_dssp             EECCSHHHHHHHHHHH--HSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHH--HCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHHHH
Confidence            3566788999999988  4578899999875421                     100  0         3566777788


Q ss_pred             HHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCC
Q 023975          173 LISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       173 ~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +++.|++++.+++|+++..+++.+. +.+++| ++.+|.||+|+|..
T Consensus        86 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           86 EQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred             HHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCC
Confidence            8889999999999999988877777 888888 89999999999963

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.05  E-value=6.3e-06  Score=68.79  Aligned_cols=94  Identities=21%  Similarity=0.329  Sum_probs=61.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee-c-cceeeecCCccccceeeeccccccccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT-W-ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (274)
                      ..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+... . ..+...+...        ..  ..++++... .+..+.
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~--------l~--~~GV~i~~~~~v~~i~  214 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARY--------HA--AQGVDLRFERSVTGSV  214 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHH--------HH--HTTCEEEESCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHH--------HH--HcCcEEEeCCEEEEEE
Confidence            479999999999999999997 59999999998765311 0 0000000000        00  013444332 222333


Q ss_pred             cCeEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 ENEVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ...+.+.+|.++.+|.+++|+|..|...
T Consensus       215 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~  242 (408)
T 2gqw_A          215 DGVVLLDDGTRIAADMVVVGIGVLANDA  242 (408)
T ss_dssp             TTEEEETTSCEEECSEEEECSCEEECCH
T ss_pred             CCEEEECCCCEEEcCEEEECcCCCccHH
Confidence            2367778888999999999999987754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.05  E-value=1.6e-06  Score=76.86  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc------CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF------SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~------g~~v~vie~~~~   46 (274)
                      .+||+||||||+||++|..|++      |++|+||||.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            4799999999999999999954      999999999764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.04  E-value=3.9e-06  Score=71.12  Aligned_cols=93  Identities=18%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||++|+.+|..|+ .|.+|+++|+.+.+...   ..    +....    ...+.+  .++++... .+..+.
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---~~----~~~~~----~l~~~l~~~Gv~i~~~~~V~~i~  235 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT---MD----LEVSR----AAERVFKKQGLTIRTGVRVTAVV  235 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT---SC----HHHHH----HHHHHHHHHTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc---cC----HHHHH----HHHHHHHHCCCEEEECCEEEEEE
Confidence            478999999999999999997 59999999998765311   00    00000    000000  13333321 122222


Q ss_pred             --cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 --EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                        .+  .+.++++.++.+|.+++|+|..|..+
T Consensus       236 ~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          236 PEAKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             EETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             EeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence              22  34555778899999999999887654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.02  E-value=1.7e-05  Score=63.75  Aligned_cols=97  Identities=15%  Similarity=-0.017  Sum_probs=71.9

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCC--Ccc--------CCcC----ChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKG--SRL--------LEFI----GPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~--~~~--------~~~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      +..+++|..|+..|..+.  ..+.+++++.+.  ...        .+..    ...+.+.+.+.+++.|++++. .+|.+
T Consensus        18 vvIIG~G~aGl~aA~~l~--~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           18 VIIVGLGPAAYGAALYSA--RYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEECCSHHHHHHHHHHH--HTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             EEEECccHHHHHHHHHHH--HCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            344566778899999888  457889999985  111        1111    134666677788889999999 89999


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      +..+++.+.+.+.+|+++.+|.+|+|+|..|...
T Consensus        95 i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENRGDEFVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC--CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEecCCEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9887778888888888999999999999876543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.99  E-value=2.7e-06  Score=71.97  Aligned_cols=94  Identities=16%  Similarity=0.246  Sum_probs=59.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++|+.+.+...   +.    +...    ....+.+  .++++... .+..+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~~----~~~~----~~l~~~l~~~Gv~i~~~~~v~~i~  235 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS---FD----PMIS----ETLVEVMNAEGPQLHTNAIPKAVV  235 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHHH----HHHHHHHHHHSCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh---hh----HHHH----HHHHHHHHHCCCEEEeCCEEEEEE
Confidence            469999999999999999997 59999999998764311   00    0000    0000000  13333322 122222


Q ss_pred             c---C--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 E---N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~---~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .   .  .+.+.+|.++.+|.+++|+|..|....
T Consensus       236 ~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~  269 (450)
T 1ges_A          236 KNTDGSLTLELEDGRSETVDCLIWAIGREPANDN  269 (450)
T ss_dssp             ECTTSCEEEEETTSCEEEESEEEECSCEEESCTT
T ss_pred             EeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCC
Confidence            1   1  466778888999999999999887653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.98  E-value=4.3e-05  Score=63.20  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=70.1

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHH-------------HHHHHHHhCCcEEEcCceeeee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD-------------KTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      +..+++|..|+.+|..|.  ..+.+++++.+++.+. ...+.+..             ...+.+++.|++++.+++|+.+
T Consensus        12 ~vIvGgG~AGl~aA~~L~--~~~~~itlie~~~~~~-y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i   88 (385)
T 3klj_A           12 ILILGAGPAGFSAAKAAL--GKCDDITMINSEKYLP-YYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI   88 (385)
T ss_dssp             EEEECCSHHHHHHHHHHT--TTCSCEEEECSSSSCC-BCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred             EEEEcCcHHHHHHHHHHh--CCCCEEEEEECCCCCC-cccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence            344667888999999984  6788999999877531 11111222             2345667889999999999999


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      ..+..  .+++++|+++.+|.+|+|||..|..+
T Consensus        89 d~~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           89 DPNNK--LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             ETTTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             ECCCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence            75543  67778899999999999999876543

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.98  E-value=5.1e-06  Score=73.39  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh---c--CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ---F--SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~---~--g~~v~vie~~~~   46 (274)
                      .+||+|||||++||+||+.|+   +  |.+|+|+||...
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            479999999999999999998   3  999999999874

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.97  E-value=5.1e-06  Score=73.36  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c------CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F------SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~------g~~v~vie~~~~   46 (274)
                      .+||+|||||+|||+||+.|+ .      |.+|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            479999999999999999997 4      999999999754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.95  E-value=6.3e-06  Score=71.11  Aligned_cols=97  Identities=13%  Similarity=0.062  Sum_probs=59.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEee-EEE--
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPA-INI--   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--   87 (274)
                      ...+++|||||+.|+-.|..+++ |.+|+|+++...+..--......+...+        .  ..++.+..... ..+  
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l--------~--~~gi~~~~~~~v~~~~~  291 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYM--------E--EQGVMFKNGILPKKLTK  291 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHH--------H--HTTCEEEETCCEEEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHH--------H--hhcceeecceEEEEEEe
Confidence            34789999999999999999985 9999999986543210000000000000        0  01233322211 111  


Q ss_pred             ecC--eEEeCCCeEEecCEEEEccCCCCCCChh
Q 023975           88 TEN--EVLTAEGRRVVYDYLVIATGHKDPVPKT  118 (274)
Q Consensus        88 ~~~--~v~~~~~~~~~~~~li~a~G~~~~~~~~  118 (274)
                      ...  .+.+.++..+.+|.+++|+|..|+...+
T Consensus       292 ~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L  324 (542)
T 4b1b_A          292 MDDKILVEFSDKTSELYDTVLYAIGRKGDIDGL  324 (542)
T ss_dssp             ETTEEEEEETTSCEEEESEEEECSCEEESCGGG
T ss_pred             cCCeEEEEEcCCCeEEEEEEEEcccccCCcccc
Confidence            112  4666778888999999999999887653

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.95  E-value=5.6e-06  Score=71.49  Aligned_cols=36  Identities=42%  Similarity=0.567  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~~~   47 (274)
                      ..||+||||||++|+.+|.+|+  .+++|+|||++...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            3699999999999999999997  48999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.95  E-value=3.4e-06  Score=69.37  Aligned_cols=90  Identities=24%  Similarity=0.281  Sum_probs=59.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEec
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINITE   89 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~   89 (274)
                      .+++|||||+.|+.+|..|+ .|.+|+++++.+.+..    +    .+...    ....+.+  .++++... ....+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----~----~~~~~----~~l~~~l~~~gV~i~~~~~v~~i~~  211 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----L----DEELS----NMIKDMLEETGVKFFLNSELLEANE  211 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----C----CHHHH----HHHHHHHHHTTEEEECSCCEEEECS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc----C----CHHHH----HHHHHHHHHCCCEEEcCCEEEEEEe
Confidence            68999999999999999997 5999999999876531    1    10000    0000001  13444322 2233334


Q ss_pred             CeEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           90 NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        90 ~~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ..+.+++|. +.+|.+++|+|..|..+
T Consensus       212 ~~v~~~~g~-i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          212 EGVLTNSGF-IEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             SEEEETTEE-EECSCEEEECCEEECCH
T ss_pred             eEEEECCCE-EEcCEEEECcCCCcCHH
Confidence            467777887 99999999999987764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.94  E-value=1e-05  Score=67.02  Aligned_cols=94  Identities=19%  Similarity=0.303  Sum_probs=59.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec--cceeeecCCccccceeeeccccccccEEEEEe-eEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW--ASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++|+.+.+....  ..+...+...        ..+  .++++.... +..+.
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~--------l~~--~gv~i~~~~~v~~i~  214 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAG--------LEG--LGVRFHLGPVLASLK  214 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHH--------HHT--TTCEEEESCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHH--------HHH--cCCEEEeCCEEEEEE
Confidence            479999999999999999997 599999999987643210  0000000000        000  133443221 22222


Q ss_pred             --cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 --EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                        ..  .+.+++|.++.+|.+++|+|..|...
T Consensus       215 ~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  246 (384)
T 2v3a_A          215 KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTE  246 (384)
T ss_dssp             EETTEEEEEETTSCEEEESEEEECSCEEECCH
T ss_pred             ecCCEEEEEECCCCEEECCEEEECcCCCcCHH
Confidence              22  46677888899999999999987753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.93  E-value=5.4e-06  Score=70.40  Aligned_cols=95  Identities=19%  Similarity=0.289  Sum_probs=58.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +.    +...........  ..++++... .+..+.  
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~---~~----~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ---FD----PLLSATLAENMH--AQGIETHLEFAVAALERD  236 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHHHHHHHHHHH--HTTCEEESSCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc---cC----HHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            468999999999999999997 59999999998764311   00    000000000000  012333221 111221  


Q ss_pred             c--CeEEeCCCe-EEecCEEEEccCCCCCCC
Q 023975           89 E--NEVLTAEGR-RVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~--~~v~~~~~~-~~~~~~li~a~G~~~~~~  116 (274)
                      .  ..+.+++|. ++.+|.+++|+|..|...
T Consensus       237 ~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          237 AQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             TTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred             CCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence            1  156677887 899999999999988764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.93  E-value=9e-05  Score=59.87  Aligned_cols=92  Identities=16%  Similarity=0.057  Sum_probs=70.0

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC---------------CcC----ChhHHHHHHHHHHhCCcEEEcCce
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------EFI----GPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                      .+++|..|+..|..+.  ..+.+++++.+.+.+.               +..    ...+.+.+.+.+++.+++++.+++
T Consensus        10 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   87 (335)
T 2zbw_A           10 IVGAGPTGLFAGFYVG--MRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLGER   87 (335)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEESCC
T ss_pred             EECCCHHHHHHHHHHH--hCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCE
Confidence            3566778888888887  4578899999875431               011    134556666777788999999999


Q ss_pred             eeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          186 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       186 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      |..+..+++.+.+.+.+|+++.+|.||+|+|..
T Consensus        88 v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           88 AETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             EEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            999987666677888888889999999999984

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.92  E-value=6.7e-06  Score=71.35  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ...+|++|||+|++|+.+|.+|+ .|.+|+|+|++...
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34689999999999999999997 49999999998743

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.92  E-value=4.6e-06  Score=70.72  Aligned_cols=93  Identities=17%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||++|+.+|..|++ |.+|+++|+.+.+...   +.    +....    ...+.+  .++++... .+..+.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~~----~~~~~----~l~~~l~~~gv~i~~~~~v~~i~  239 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT---YD----SELTA----PVAESLKKLGIALHLGHSVEGYE  239 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---SC----HHHHH----HHHHHHHHHTCEEETTCEEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc---cC----HHHHH----HHHHHHHHCCCEEEECCEEEEEE
Confidence            4799999999999999999974 9999999998765411   00    00000    000000  12333211 111222


Q ss_pred             cC--eEEeCCC--eEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~~~--~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+...+|  .++.+|.+++|+|..|..+
T Consensus       240 ~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          240 NGCLLANDGKGGQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             TTEEEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred             eCCEEEEECCCceEEEECCEEEECcCCCcCCC
Confidence            11  1222245  5799999999999987765

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.92  E-value=5.9e-06  Score=70.21  Aligned_cols=96  Identities=25%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...   ..    +.... .+.... ...++++... .+..+.  
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~~----~~~~~-~l~~~l-~~~gV~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ---GD----PETAA-LLRRAL-EKEGIRVRTKTKAVGYEKK  239 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHHHH-HHHHHH-HHTTCEEECSEEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc---cC----HHHHH-HHHHHH-HhcCCEEEcCCEEEEEEEe
Confidence            479999999999999999997 59999999998765311   00    00000 000000 0013333322 122222  


Q ss_pred             cC--eEEeC-C--Ce--EEecCEEEEccCCCCCCCh
Q 023975           89 EN--EVLTA-E--GR--RVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~~--~v~~~-~--~~--~~~~~~li~a~G~~~~~~~  117 (274)
                      ..  .+.+. +  |.  ++.+|.+++|+|..|..+.
T Consensus       240 ~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          240 KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             TTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             CCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence            12  34443 4  65  7899999999999887654

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.91  E-value=5e-06  Score=73.47  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C--------CcEEEEcCCC-Cc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S--------ADVTLIDPKE-YF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g--------~~v~vie~~~-~~   47 (274)
                      .++|+|||||++||+||+.|++ |        ++|+|+|+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            4799999999999999999974 7        9999999998 88

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.89  E-value=1e-05  Score=69.39  Aligned_cols=93  Identities=14%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+...   +.    +....    ...+.+  .++++... .+..+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---~d----~~~~~----~l~~~l~~~gv~i~~~~~v~~i~  244 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK---FD----ESVIN----VLENDMKKNNINIVTFADVVEIK  244 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT---SC----HHHHH----HHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc---cc----hhhHH----HHHHHHHhCCCEEEECCEEEEEE
Confidence            4799999999999999999974 9999999998765311   10    00000    000000  13333222 112222


Q ss_pred             --c-C--eEEeCCCeE-EecCEEEEccCCCCCCC
Q 023975           89 --E-N--EVLTAEGRR-VVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~-~--~v~~~~~~~-~~~~~li~a~G~~~~~~  116 (274)
                        . .  .+.+++|.+ +.+|.+++|+|..|...
T Consensus       245 ~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          245 KVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             ESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred             EcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence              1 1  466677877 89999999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.89  E-value=2.3e-05  Score=63.17  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=69.4

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC---------------CcC----ChhHHHHHHHHHHhCCcEEEcCce
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL---------------EFI----GPKAGDKTRDWLISKKVDVKLGER  185 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~gv~i~~~~~  185 (274)
                      .+++|..|+..|..+.  ..+.+++++.+.+.+.               +..    ...+...+.+.+++.|++++.+++
T Consensus        12 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (332)
T 3lzw_A           12 IIGGGPVGLFTAFYGG--MRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLEQA   89 (332)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECSCC
T ss_pred             EECCCHHHHHHHHHHH--HCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEccCE
Confidence            3455777888888887  4578999999876421               111    134566677778888999999999


Q ss_pred             eeeeccCCC-ceeEECCCCcEEeecEEEEcccC
Q 023975          186 VNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       186 v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      |.++..+++ .+.+.+.+|+ +.+|.||+|+|.
T Consensus        90 v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~  121 (332)
T 3lzw_A           90 VESVEKQADGVFKLVTNEET-HYSKTVIITAGN  121 (332)
T ss_dssp             EEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred             EEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence            999987765 6778888886 999999999998

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.88  E-value=6.9e-06  Score=69.42  Aligned_cols=97  Identities=23%  Similarity=0.225  Sum_probs=58.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (274)
                      ..++++|||+|++|+.+|..|+ .|.+|+++|+.+.+....  +    .+.+.........  ..++++... .+..+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--~----~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~  219 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY--L----DKEFTDVLTEEME--ANNITIATGETVERYEG  219 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT--C----CHHHHHHHHHHHH--TTTEEEEESCCEEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccccc--C----CHHHHHHHHHHHH--hCCCEEEcCCEEEEEEc
Confidence            3579999999999999999997 599999999987653110  0    0000000000000  013444332 2223322


Q ss_pred             C----eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           90 N----EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        90 ~----~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .    .+.+ ++.++.+|.+++|+|..|..+.
T Consensus       220 ~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~  250 (447)
T 1nhp_A          220 DGRVQKVVT-DKNAYDADLVVVAVGVRPNTAW  250 (447)
T ss_dssp             SSBCCEEEE-SSCEEECSEEEECSCEEESCGG
T ss_pred             cCcEEEEEE-CCCEEECCEEEECcCCCCChHH
Confidence            1    2444 4568999999999999877654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.83  E-value=1.7e-05  Score=66.05  Aligned_cols=94  Identities=20%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec--cceeeecCCccccceeeeccccccccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW--ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|. .|.+|+++++.+.+....  ..+...+...+        .  ..++++... .+..+.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l--------~--~~GV~i~~~~~v~~i~  211 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRH--------S--GAGIRMHYGVRATEIA  211 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHH--------H--HTTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHH--------H--hCCcEEEECCEEEEEE
Confidence            468999999999999999997 599999999987653110  00000000000        0  013343322 122222


Q ss_pred             --cC---eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 --EN---EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~---~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                        ..   .+.+++|+++.+|.+|+|+|..|...
T Consensus       212 ~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~  244 (404)
T 3fg2_P          212 AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVE  244 (404)
T ss_dssp             EETTEEEEEEETTSCEEECSEEEECCCEEECCH
T ss_pred             ecCCcEEEEEeCCCCEEEcCEEEECcCCccCHH
Confidence              11   46778898999999999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=1.2e-05  Score=68.54  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +.    +....    ...+.+  .++++... .+..+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---~d----~~~~~----~l~~~l~~~Gv~i~~~~~v~~i~  253 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK---FD----ECIQN----TITDHYVKEGINVHKLSKIVKVE  253 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT---SC----HHHHH----HHHHHHHHHTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc---cC----HHHHH----HHHHHHHhCCeEEEeCCEEEEEE
Confidence            478999999999999999997 59999999998764311   10    00000    000000  13333222 111221


Q ss_pred             c------CeEEeCCC-eEEecCEEEEccCCCCCC
Q 023975           89 E------NEVLTAEG-RRVVYDYLVIATGHKDPV  115 (274)
Q Consensus        89 ~------~~v~~~~~-~~~~~~~li~a~G~~~~~  115 (274)
                      .      ..+.+++| .++.+|.+++|+|..|..
T Consensus       254 ~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          254 KNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             ECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             EcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            1      14667788 789999999999988765

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.81  E-value=2.3e-05  Score=65.50  Aligned_cols=94  Identities=21%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecccc--ccccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY--LVNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+....  +    .+..    .....+.  ..++++... .+..+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~--~----~~~~----~~~l~~~l~~~GV~i~~~~~v~~i~  221 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV--A----GEAL----SEFYQAEHRAHGVDLRTGAAMDCIE  221 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT--S----CHHH----HHHHHHHHHHTTCEEEETCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh--c----CHHH----HHHHHHHHHhCCCEEEECCEEEEEE
Confidence            478999999999999999997 599999999987653100  0    0000    0000000  013444322 222222


Q ss_pred             c---C--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 E---N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~---~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      .   +  .+.+++|+++.+|.+|+|+|..|...
T Consensus       222 ~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~  254 (415)
T 3lxd_A          222 GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVG  254 (415)
T ss_dssp             ESSSBEEEEEESSSCEEECSEEEECSCCEESCH
T ss_pred             ecCCcEEEEEeCCCCEEEcCEEEECCCCccChH
Confidence            1   1  47778898999999999999987753

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.80  E-value=8.2e-05  Score=60.82  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=70.5

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC-------C--------cC----ChhHHHHHHHHHHhCCcEEEcCc
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--------FI----GPKAGDKTRDWLISKKVDVKLGE  184 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~-------~--------~~----~~~~~~~~~~~~~~~gv~i~~~~  184 (274)
                      ..+++|..|+.+|..+.  ..+.+++++.+.+.+.       +        ..    ...+.+.+.+.+++.+++++.++
T Consensus        18 vIIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   95 (360)
T 3ab1_A           18 TIIGGGPTGIFAAFQCG--MNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLNE   95 (360)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECSC
T ss_pred             EEECCCHHHHHHHHHHH--hCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcCC
Confidence            34556778888888887  4578899998865431       1        11    13456667777888899999999


Q ss_pred             eeeeeccCCC-ceeEECCCCcEEeecEEEEcccCC
Q 023975          185 RVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       185 ~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +|+.+..+++ .+.+.+.+|+++.+|.||+|+|..
T Consensus        96 ~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           96 TVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             CEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             EEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            9999987654 677888888899999999999984

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.79  E-value=1.3e-05  Score=69.33  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~   47 (274)
                      ..+|++|||||.+|+.+|..|++|.+|+|+|++...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCc
Confidence            358999999999999999999779999999998764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.77  E-value=1.2e-05  Score=64.45  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      .++++|||||..|+-+|..|++ |.+|+++++....
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            4789999999999999999985 9999999987653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.76  E-value=1e-05  Score=69.00  Aligned_cols=94  Identities=17%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc-eeeecCCccccceeeeccccccccEEEEE-eeEEEec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++|+.+.+...+.. +...+...        ..  ..++++... .+..+..
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~--------l~--~~gv~i~~~~~v~~i~~  252 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKF--------LK--KQGLDFKLSTKVISAKR  252 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHH--------HH--HTTCEEECSEEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHH--------HH--HCCCEEEeCCEEEEEEE
Confidence            479999999999999999997 59999999998765421110 00000000        00  013333322 1222221


Q ss_pred             ----C--eEEeC-----CCeEEecCEEEEccCCCCCCC
Q 023975           90 ----N--EVLTA-----EGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        90 ----~--~v~~~-----~~~~~~~~~li~a~G~~~~~~  116 (274)
                          +  .+.+.     ++.++.+|.+++|+|..|...
T Consensus       253 ~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          253 NDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             ecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence                1  23333     346789999999999887764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.76  E-value=1.7e-05  Score=67.18  Aligned_cols=95  Identities=21%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      .++++|||||+.|+.+|..|+ .|.+|+++|+.+.+...   +    .+...........  ..++++... .+..+.  
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~gv~i~~~~~v~~i~~~  240 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG---F----EKQMAAIIKKRLK--KKGVEVVTNALAKGAEER  240 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT---S----CHHHHHHHHHHHH--HTTCEEEESEEEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc---c----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            479999999999999999997 59999999998765311   0    0000000000000  013444322 222222  


Q ss_pred             cC--eEEeC---CCeEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTA---EGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~---~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+.+.   ++.++.+|.+++|+|..|..+
T Consensus       241 ~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          241 EDGVTVTYEANGETKTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             TTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred             CCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence            21  23332   356789999999999987654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.75  E-value=9.6e-05  Score=58.50  Aligned_cols=95  Identities=17%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCcc---------CCcC----ChhHHHHHHHHHHhC-CcEEEcCceeeeec
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRL---------LEFI----GPKAGDKTRDWLISK-KVDVKLGERVNLDS  190 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~  190 (274)
                      .+++|..|+.+|..|.  ..+.+++++.+.+..         .+..    ...+...+.+.+++. ++++.. .+|+.+.
T Consensus         7 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~   83 (297)
T 3fbs_A            7 IIGGSYAGLSAALQLG--RARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAK   83 (297)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEE
T ss_pred             EECCCHHHHHHHHHHH--hCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEE
Confidence            4567888999999998  457899999875321         1111    124566667777776 788765 4888888


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+++.+.+.+.+|+++.+|.||+|+|..|..+
T Consensus        84 ~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           84 GSFGEFIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EcCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            77777888899998999999999999876543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.75  E-value=0.00013  Score=58.30  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=69.1

Q ss_pred             HccCCchhhhHHHHhhhhCCCC-eEEEEeCCCc-----------cCCcC-----ChhHHHHHHHHHHhCCcEEEcCceee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEK-KVTLVHKGSR-----------LLEFI-----GPKAGDKTRDWLISKKVDVKLGERVN  187 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~-~v~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~  187 (274)
                      .+++|..|+.+|..+.  ..+. +++++.+...           ..+.+     ...+.+.+.+.+++.|++++. .++.
T Consensus         6 IIG~G~aGl~aA~~l~--~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~   82 (311)
T 2q0l_A            6 IIGGGPAGLSAGLYAT--RGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQ   82 (311)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCEE
T ss_pred             EECccHHHHHHHHHHH--HCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEEE
Confidence            3566788899998887  3477 8999987521           01111     124566677778888999988 7888


Q ss_pred             eeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          188 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       188 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      .+..+++.+.+.+.+|+++.+|.||+|+|..|..
T Consensus        83 ~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  116 (311)
T 2q0l_A           83 RVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKR  116 (311)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence            8877666667777888899999999999976643

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.74  E-value=2.1e-05  Score=68.36  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~   45 (274)
                      ..||+||||||.||+.+|.+|+  .+.+|+|||++.
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4599999999999999999997  389999999987

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.73  E-value=0.00013  Score=58.99  Aligned_cols=96  Identities=18%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCC----cc------------CCcC-----ChhHHHHHHHHHHhCCcEEEc
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGS----RL------------LEFI-----GPKAGDKTRDWLISKKVDVKL  182 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~----~~------------~~~~-----~~~~~~~~~~~~~~~gv~i~~  182 (274)
                      ..+++|..|+..|..|.  ..+.+++++.+.+    .+            .+.+     ...+...+.+.+++.|++++.
T Consensus        26 vIIG~G~aGl~aA~~l~--~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~  103 (338)
T 3itj_A           26 TIIGSGPAAHTAAIYLA--RAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIIT  103 (338)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             EEECcCHHHHHHHHHHH--HCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence            34555778888999888  4578899998843    11            1111     125667778888889999999


Q ss_pred             CceeeeeccCCCceeEEC---CCCcEEeecEEEEcccCCCCch
Q 023975          183 GERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      ++ +..+..+++.+.+.+   .++.++.+|.+|+|+|..|...
T Consensus       104 ~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          104 ET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             SC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             eE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            98 999988777777766   4667899999999999866543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.72  E-value=1.3e-05  Score=68.49  Aligned_cols=93  Identities=14%  Similarity=0.228  Sum_probs=56.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++|+.+.+...   +    .+....    ...+.+  .++++... .+..+.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~---~----~~~~~~----~l~~~l~~~gV~i~~~~~v~~i~  253 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG---A----DRDLVK----VWQKQNEYRFDNIMVNTKTVAVE  253 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT---S----CHHHHH----HHHHHHGGGEEEEECSCEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc---c----CHHHHH----HHHHHHHhcCCEEEECCEEEEEE
Confidence            479999999999999999997 49999999998765311   0    000000    000000  12333221 111221


Q ss_pred             --cC--eEEeCC----CeEEecCEEEEccCCCCCCC
Q 023975           89 --EN--EVLTAE----GRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~--~v~~~~----~~~~~~~~li~a~G~~~~~~  116 (274)
                        ..  .+.+.+    +.++.+|.+++|+|..|...
T Consensus       254 ~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          254 PKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             EETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred             EcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence              11  344544    66788999999999987654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.72  E-value=0.00014  Score=58.03  Aligned_cols=94  Identities=18%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCc--c--------CCc----CChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSR--L--------LEF----IGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~--~--------~~~----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      +++|..|+.+|..+.  ..+.++.++.+...  .        ...    ....+...+.+.+++.|++++.++++..+..
T Consensus         7 IG~G~aGl~aA~~l~--~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   84 (310)
T 1fl2_A            7 VGSGPAGAAAAIYSA--RKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIP   84 (310)
T ss_dssp             ECCSHHHHHHHHHHH--TTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEEC
T ss_pred             ECcCHHHHHHHHHHH--HCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEe
Confidence            566788899999888  55788888864310  0        000    0124566677778889999999999999865


Q ss_pred             CC---CceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          192 SE---GSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       192 ~~---~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +.   +...+.+++|+++.+|.+|+|+|..|..
T Consensus        85 ~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           85 AAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             CSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             cccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            42   3567888888889999999999986643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.72  E-value=1.4e-05  Score=68.43  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCceeeccceeeecCCccccceeeecccc--ccccEEEEE-eeE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY--LVNGRIVAS-PAI   85 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~   85 (274)
                      ..+++|||+|..|+.+|..|+ .   |.+|+++++.+.+...   +    .+...    ....+.  ..+++++.. .+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---~----d~~~~----~~l~~~l~~~GV~i~~~~~v~  259 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG---F----DETIR----EEVTKQLTANGIEIMTNENPA  259 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT---S----CHHHH----HHHHHHHHHTTCEEEESCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc---c----CHHHH----HHHHHHHHhCCCEEEeCCEEE
Confidence            468999999999999998886 5   9999999998764311   1    00000    000000  013444332 222


Q ss_pred             EEe--c---CeEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           86 NIT--E---NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        86 ~~~--~---~~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      .+.  .   ..+.+.+|.++.+|.+++|+|..|...
T Consensus       260 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          260 KVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             EEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            222  1   156677888899999999999987764

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.71  E-value=2.8e-05  Score=67.65  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (274)
                      ..+|+||||||.||+.+|..|+. + .+|+|||++..
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35899999999999999999984 4 79999999876

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.70  E-value=3.3e-05  Score=66.11  Aligned_cols=94  Identities=26%  Similarity=0.346  Sum_probs=56.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc-ceeeecCCccccceeeeccccccccEEEEE-eeEEE--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI--   87 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--   87 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+..... .+...+...+..           .+++... .+..+  
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-----------~V~i~~~~~v~~i~~  242 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNE-----------EFYFDAKARVISTIE  242 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHT-----------TSEEETTCEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhh-----------CcEEEECCEEEEEEE
Confidence            479999999999999999997 5999999999887542110 000000000000           1222111 11111  


Q ss_pred             ecC--eEEeC--CC--eEEecCEEEEccCCCCCCCh
Q 023975           88 TEN--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        88 ~~~--~v~~~--~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                      +..  .+.+.  +|  .++.+|.+++|+|..|....
T Consensus       243 ~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          243 KEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             CSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             cCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence            111  23332  56  68899999999999876553

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.69  E-value=1.6e-05  Score=68.00  Aligned_cols=93  Identities=18%  Similarity=0.265  Sum_probs=58.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c---CCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI   85 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~   85 (274)
                      ..+++|||||+.|+.+|..|+ .   |.+|+++++.+.+...   +    .+..    .....+.+  .++++... .+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~---~----d~~~----~~~l~~~l~~~GV~i~~~~~v~  255 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG---F----DSEL----RKQLTEQLRANGINVRTHENPA  255 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT---S----CHHH----HHHHHHHHHHTTEEEEETCCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccc---c----CHHH----HHHHHHHHHhCCCEEEeCCEEE
Confidence            469999999999999998886 5   9999999998764311   0    0000    00000000  13444322 122


Q ss_pred             EEe--c---CeEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           86 NIT--E---NEVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        86 ~~~--~---~~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      .+.  .   ..+.+++|.++.+|.+++|+|..|...
T Consensus       256 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          256 KVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             EEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             EEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence            222  1   146677887899999999999987654

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.67  E-value=5.1e-05  Score=63.89  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             HHHccCCchhhhHHHHhhh-hCCCCeEEEEeCCCccC--Cc--------C-ChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          123 LNQYQAGPTGVELAGEIAV-DFPEKKVTLVHKGSRLL--EF--------I-GPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~-~~~~~~v~~~~~~~~~~--~~--------~-~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      +..+++|..|+..|..|.+ ...+.+++++.+.+.+.  +.        . ...+...+.+.+++.|++++. .+++.+.
T Consensus         7 vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~id   85 (437)
T 3sx6_A            7 VVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQID   85 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEEEE
T ss_pred             EEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEEEE
Confidence            3446678889999999884 12678999999887541  10        0 011222245667788999985 6888887


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCCchhhc
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK  225 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~  225 (274)
                      .+++  .|.+++|+++.+|.+|+|+|..|+.+.++
T Consensus        86 ~~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           86 AEAQ--NITLADGNTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             TTTT--EEEETTSCEEECSEEEECCCCEECGGGST
T ss_pred             cCCC--EEEECCCCEEECCEEEECCCCCcCcccCC
Confidence            5544  67778888999999999999987654443

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.67  E-value=2.5e-05  Score=66.53  Aligned_cols=95  Identities=20%  Similarity=0.270  Sum_probs=57.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++|+.+.+...  .+    .+...    ....+.+  .++++... .+..+.
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--~~----~~~~~----~~l~~~l~~~Gv~i~~~~~v~~i~  247 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--GI----DMEIS----KNFQRILQKQGFKFKLNTKVTGAT  247 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--SC----CHHHH----HHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--cc----CHHHH----HHHHHHHHHCCCEEEeCceEEEEE
Confidence            478999999999999999997 59999999998765320  00    00000    0000000  13333221 122222


Q ss_pred             --cC---eEE-----eCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 --EN---EVL-----TAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 --~~---~v~-----~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                        ..   .+.     ..++.++.+|.+++|+|..|....
T Consensus       248 ~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~  286 (474)
T 1zmd_A          248 KKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN  286 (474)
T ss_dssp             ECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTT
T ss_pred             EcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCc
Confidence              11   222     245678999999999999887654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.66  E-value=2.3e-05  Score=68.31  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  187 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM  187 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc
Confidence            468999999999999999997 599999999987543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.65  E-value=2.8e-05  Score=66.49  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE   89 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (274)
                      ...+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...  .+    .+...........  ..++++... .+..+..
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--~~----~~~~~~~l~~~l~--~~GV~i~~~~~v~~i~~  264 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--YY----DRDLTDLMAKNME--EHGIQLAFGETVKEVAG  264 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT--TS----CHHHHHHHHHHHH--TTTCEEEETCCEEEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh--HH----HHHHHHHHHHHHH--hCCeEEEeCCEEEEEEc
Confidence            3579999999999999999997 59999999998764310  00    0000000000000  013444322 1222221


Q ss_pred             --C--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           90 --N--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        90 --~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                        +  .+.+ ++.++.+|.+++|+|..|..+
T Consensus       265 ~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          265 NGKVEKIIT-DKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             SSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred             CCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence              1  2444 567899999999999987764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.64  E-value=4.7e-05  Score=66.52  Aligned_cols=58  Identities=9%  Similarity=-0.134  Sum_probs=47.9

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCC--Cce-eEECCCCcEEeecEEEEcccCCC
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSD-TYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ...+.+.+.+.++..|++++++++|.+|..++  +.+ .|+..+|+++.||.||....+.|
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp  437 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  437 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcC
Confidence            34688999999999999999999999998765  444 45567799999999999777655

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.61  E-value=3.8e-05  Score=65.23  Aligned_cols=94  Identities=16%  Similarity=0.231  Sum_probs=56.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+...   +.    +...    ....+.+  .++++... .+..+.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---~~----~~~~----~~l~~~l~~~gv~i~~~~~v~~i~  239 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN---ED----ADVS----KEIEKQFKKLGVTILTATKVESIA  239 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHHH----HHHHHHHHHHTCEEECSCEEEEEE
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc---cC----HHHH----HHHHHHHHHcCCEEEeCcEEEEEE
Confidence            479999999999999999997 59999999998765311   00    0000    0000000  13333221 112222


Q ss_pred             --cC--eEEeC-CC--eEEecCEEEEccCCCCCCCh
Q 023975           89 --EN--EVLTA-EG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 --~~--~v~~~-~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                        ..  .+.+. +|  .++.+|.+++|+|..|....
T Consensus       240 ~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~  275 (464)
T 2a8x_A          240 DGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG  275 (464)
T ss_dssp             ECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred             EcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence              11  23332 45  67899999999999887654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.59  E-value=0.00032  Score=56.42  Aligned_cols=94  Identities=14%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc-----------cCCcC-----ChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------LLEFI-----GPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      .+++|..|+..|..+.  ..+.+++++.+...           ..+.+     ...+.+.+.+.+++.|++++. .++..
T Consensus        13 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   89 (325)
T 2q7v_A           13 IIGGGPAGLTAAIYTG--RAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEVQG   89 (325)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEE
T ss_pred             EECCCHHHHHHHHHHH--HcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEE
Confidence            3455777888888887  45788999988621           01111     124566677778889999987 57888


Q ss_pred             eccC--CCc-eeEECCCCcEEeecEEEEcccCCCCc
Q 023975          189 DSVS--EGS-DTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       189 i~~~--~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +..+  ++. +.+.+.+|+++.+|.||+|+|..|..
T Consensus        90 i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           90 VQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8765  333 66777788899999999999986643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.59  E-value=0.00024  Score=57.30  Aligned_cols=93  Identities=20%  Similarity=0.068  Sum_probs=67.7

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeC----CCcc------------CCcC-----ChhHHHHHHHHHHhCCcEEEcC
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHK----GSRL------------LEFI-----GPKAGDKTRDWLISKKVDVKLG  183 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~----~~~~------------~~~~-----~~~~~~~~~~~~~~~gv~i~~~  183 (274)
                      .+++|..|+.+|..|.  ..+.+++++.+    ...+            .+.+     ...+...+.+.+++.|++++.+
T Consensus        13 IIG~G~aGl~~A~~l~--~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~   90 (333)
T 1vdc_A           13 IVGSGPAAHTAAIYAA--RAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTE   90 (333)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEECC
T ss_pred             EECcCHHHHHHHHHHH--HCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence            3455777888888887  34778888887    2211            1111     1245666777788899999998


Q ss_pred             ceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          184 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       184 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      + +..+..+++.+.+.+ +|+++.+|.||+|+|..|..
T Consensus        91 ~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           91 T-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             C-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             E-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence            7 888887777777877 77889999999999987644

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.58  E-value=3.4e-05  Score=66.52  Aligned_cols=94  Identities=15%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEec--
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE--   89 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--   89 (274)
                      .+++|||+|..|+.+|..|+ .|.+|+++++.+.+...   +    .+...........  ..++++... .+..+..  
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~---~----~~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~~~  285 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI---K----DNETRAYVLDRMK--EQGMEIISGSNVTRIEEDA  285 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC---C----SHHHHHHHHHHHH--HTTCEEESSCEEEEEEECT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc---c----cHHHHHHHHHHHH--hCCcEEEECCEEEEEEEcC
Confidence            79999999999999999997 59999999998764311   0    0000000000000  013333211 1122211  


Q ss_pred             -C-----eEEeCCCe-EEecCEEEEccCCCCCCC
Q 023975           90 -N-----EVLTAEGR-RVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        90 -~-----~v~~~~~~-~~~~~~li~a~G~~~~~~  116 (274)
                       .     .+.+++|. ++.+|.+|+|+|..|...
T Consensus       286 ~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          286 NGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             TSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             CCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence             1     35666776 899999999999998765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.57  E-value=0.00052  Score=56.14  Aligned_cols=93  Identities=19%  Similarity=0.117  Sum_probs=67.2

Q ss_pred             HccCCchhhhHHHHhhhhCCCC-eEEEEeCCC------c------c-CCc-------C---------------------C
Q 023975          125 QYQAGPTGVELAGEIAVDFPEK-KVTLVHKGS------R------L-LEF-------I---------------------G  162 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~-~v~~~~~~~------~------~-~~~-------~---------------------~  162 (274)
                      .+++|..|+.+|..+.  ..+. +++++.+.+      .      + .+.       .                     .
T Consensus         9 IIGaG~aGl~aA~~l~--~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   86 (369)
T 3d1c_A            9 IIGAGAAGIGMAITLK--DFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHIS   86 (369)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSSCB
T ss_pred             EECcCHHHHHHHHHHH--HcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccCCC
Confidence            4566788899998887  3466 899998764      0      0 000       0                     0


Q ss_pred             -hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          163 -PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       163 -~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                       ..+...+.+.+++.|++++.+++|.++..+++.+.|.+.++ ++.+|.||+|+|..+.
T Consensus        87 ~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           87 GETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence             12344556667788999999999999987766777877777 5999999999998653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.57  E-value=4.4e-05  Score=65.15  Aligned_cols=94  Identities=19%  Similarity=0.308  Sum_probs=59.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +.    +...    ....+.+  .++++... .+..+.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~~----~~~~----~~l~~~l~~~Gv~i~~~~~V~~i~  259 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN---FD----YDLR----QLLNDAMVAKGISIIYEATVSQVQ  259 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHHH----HHHHHHHHHHTCEEESSCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc---cC----HHHH----HHHHHHHHHCCCEEEeCCEEEEEE
Confidence            579999999999999999987 59999999998764311   00    0000    0000000  13333321 222222


Q ss_pred             c--C--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           89 E--N--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 ~--~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      .  .  .+.+.+|.++.+|.+++|+|..|....
T Consensus       260 ~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          260 STENCYNVVLTNGQTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             ECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             eeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence            1  1  567778888999999999999876654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.55  E-value=4.9e-05  Score=64.59  Aligned_cols=94  Identities=22%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc---cccEEEEE-eeEEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVAS-PAINI   87 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~   87 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +    .+...    ....+.+   .+++++.. .+..+
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---~----d~~~~----~~l~~~l~~~~gv~i~~~~~v~~i  242 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT---L----DEDVT----NALVGALAKNEKMKFMTSTKVVGG  242 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHHH----HHHHHHHHHHTCCEEECSCEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc---C----CHHHH----HHHHHHHhhcCCcEEEeCCEEEEE
Confidence            479999999999999999997 59999999998765311   1    00000    0000001   13333321 12222


Q ss_pred             e--cC--eEEeC--CC--eEEecCEEEEccCCCCCCCh
Q 023975           88 T--EN--EVLTA--EG--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        88 ~--~~--~v~~~--~~--~~~~~~~li~a~G~~~~~~~  117 (274)
                      .  ..  .+.+.  +|  .++.+|.+++|+|..|....
T Consensus       243 ~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  280 (468)
T 2qae_A          243 TNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG  280 (468)
T ss_dssp             EECSSSEEEEEECC---EEEEEESEEEECSCEEECCTT
T ss_pred             EEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCC
Confidence            2  11  23333  55  67899999999999887654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.55  E-value=4.7e-05  Score=60.96  Aligned_cols=36  Identities=31%  Similarity=0.464  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      .++|+|||||+.|+-+|..|++ |.+|+|+|+.+.+.
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            3689999999999999999985 99999999987653

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.55  E-value=3.6e-05  Score=66.77  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~~~   47 (274)
                      .+|++|||||.||+.+|.+|+  ++.+|+|+|++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            489999999999999999997  48999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.55  E-value=3.8e-05  Score=64.98  Aligned_cols=93  Identities=17%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...  .+    .+.+.    ....+.+  .++++... .+..+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--~~----~~~~~----~~l~~~l~~~Gv~i~~~~~v~~i~  218 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK--YF----DKEFT----DILAKDYEAHGVNLVLGSKVAAFE  218 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT--TS----CHHHH----HHHHHHHHHTTCEEEESSCEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh--hh----hhhHH----HHHHHHHHHCCCEEEcCCeeEEEE
Confidence            468999999999999999997 49999999998754310  00    00000    0000000  13344322 122222


Q ss_pred             --cC---eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 --EN---EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~---~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                        ..   .+.+ ++.++.+|.+++|+|..|..+
T Consensus       219 ~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          219 EVDDEIITKTL-DGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             EETTEEEEEET-TSCEEEESEEEECCCEEECCG
T ss_pred             cCCCeEEEEEe-CCCEEECCEEEECcCCCCCHH
Confidence              12   1333 677899999999999987764

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.55  E-value=6.3e-05  Score=64.58  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ..+|++|||+|++|+.+|..|. +|.+|+|+|++...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            4589999999999999999997 59999999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.54  E-value=0.00018  Score=60.75  Aligned_cols=99  Identities=18%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--Cc-C----Ch------hHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--EF-I----GP------KAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--~~-~----~~------~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ..+++|..|+..|..+.+..++.+++++.+.+.+.  +. .    ..      .+.....+.+++.|++++.+++|+.+.
T Consensus         6 vIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~~id   85 (452)
T 3oc4_A            6 VIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVAMD   85 (452)
T ss_dssp             EEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEEEEE
Confidence            34667888999999998666689999999887542  10 0    00      011113456678899999999999998


Q ss_pred             cCCCceeEE-CCCCcEEeecEEEEcccCCCCch
Q 023975          191 VSEGSDTYL-TSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       191 ~~~~~~~v~-~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+.+.+.+. ..+++++.+|.+|+|||..|..+
T Consensus        86 ~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           86 VENQLIAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             TTTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             CCCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence            777766664 33556899999999999987544

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.51  E-value=0.00025  Score=61.48  Aligned_cols=95  Identities=17%  Similarity=0.099  Sum_probs=69.7

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--------Cc-----------------------------CChhHH
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EF-----------------------------IGPKAG  166 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--------~~-----------------------------~~~~~~  166 (274)
                      ..+++|.+|+.+|..|.  ..+.+++++.+.+.+.        +.                             ..+.+.
T Consensus        25 vIIGaG~aGl~aA~~L~--~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei~  102 (549)
T 4ap3_A           25 VVVGAGIAGLYAIHRFR--SQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEIL  102 (549)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHHH
T ss_pred             EEECchHHHHHHHHHHH--hCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHHH
Confidence            34556778888898887  4677999999865321        00                             012345


Q ss_pred             HHHHHHHHhCCc--EEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEccc--CCCC
Q 023975          167 DKTRDWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG--KPVG  220 (274)
Q Consensus       167 ~~~~~~~~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G--~~~~  220 (274)
                      ..+.+.+++.++  .++.+++|+++..+++  .+.|.+.+|+++.||.||+|+|  ..|.
T Consensus       103 ~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~  162 (549)
T 4ap3_A          103 AYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN  162 (549)
T ss_dssp             HHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred             HHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence            566677778888  8999999999976554  5678889999999999999999  4444

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.51  E-value=9e-05  Score=63.37  Aligned_cols=94  Identities=18%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||||+.|+.+|..|+ .|.+|+++++.+.+....       .+...    ....+.+  .++++... .+..+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------d~~~~----~~l~~~l~~~gV~v~~~~~v~~i~  266 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGM-------DGEVA----KQLQRMLTKQGIDFKLGAKVTGAV  266 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSS-------CHHHH----HHHHHHHHHTTCEEECSEEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccC-------CHHHH----HHHHHHHHhCCCEEEECCeEEEEE
Confidence            478999999999999999997 499999999987654211       00000    0000000  13333221 111221


Q ss_pred             --cC--eEEeCC---C--eEEecCEEEEccCCCCCCCh
Q 023975           89 --EN--EVLTAE---G--RRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        89 --~~--~v~~~~---~--~~~~~~~li~a~G~~~~~~~  117 (274)
                        ..  .+.+.+   |  .++.+|.+++|+|..|....
T Consensus       267 ~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~  304 (491)
T 3urh_A          267 KSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG  304 (491)
T ss_dssp             EETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred             EeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence              12  233331   4  67899999999999877654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.51  E-value=6.3e-05  Score=64.54  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      .+|++|||+|++|+.+|..|+ .|.+|+|+|+....+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            489999999999999999997 599999999987654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.50  E-value=4.1e-05  Score=65.11  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..+++|||||+.|+.+|..|++ |.+|+++++.+.+.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  213 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV  213 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            4799999999999999999974 99999999987653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.49  E-value=5.2e-05  Score=64.36  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +    .+..    .....+.+  .++++... .+..+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~---~----~~~~----~~~l~~~l~~~Gv~i~~~~~v~~i~  238 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR---F----DQDM----RRGLHAAMEEKGIRILCEDIIQSVS  238 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---S----CHHH----HHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHH----HHHHHHHHHHCCCEEECCCEEEEEE
Confidence            579999999999999999987 59999999998754311   0    0000    00000000  13344322 122222


Q ss_pred             c---C--eEE-eCCCeEEecCEEEEccCCCCCCC
Q 023975           89 E---N--EVL-TAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~---~--~v~-~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      .   .  .+. +++|. +.+|.+++|+|..|...
T Consensus       239 ~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          239 ADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             ECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             EcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            1   1  466 77887 99999999999886654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.49  E-value=0.00037  Score=58.50  Aligned_cols=98  Identities=18%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---cCC----------hhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIG----------PKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---~~~----------~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      .+++|..|+..|..+.+.-...+++++.+.+.+.-   ...          ..+.....+.+++.|++++.++.|+.+..
T Consensus         9 IIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~   88 (431)
T 1q1r_A            9 IVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINR   88 (431)
T ss_dssp             EECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEEEET
T ss_pred             EEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEEEEEEC
Confidence            45667889999998884333337999987654210   000          01111123566788999999999999876


Q ss_pred             CCCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975          192 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       192 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      ++.  .+.+++|+++.+|.+|+|||..|..+.+
T Consensus        89 ~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           89 DRQ--QVILSDGRALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             TTT--EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred             CCC--EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence            543  5677788899999999999987765433

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.48  E-value=7e-05  Score=64.20  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=57.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe--
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT--   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+...   +    .+...........  ..++++... .+..+.  
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~---~----d~~~~~~l~~~l~--~~GV~i~~~~~V~~i~~~  252 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY---E----DADAALVLEESFA--ERGVRLFKNARAASVTRT  252 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC---S----SHHHHHHHHHHHH--HTTCEEETTCCEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHHHHHHHHHH--HCCCEEEeCCEEEEEEEe
Confidence            478999999999999999987 59999999998765311   0    0000000000000  012333211 111221  


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+.+.++.++.+|.+++|+|..|...
T Consensus       253 ~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~  282 (499)
T 1xdi_A          253 GAGVLVTMTDGRTVEGSHALMTIGSVPNTS  282 (499)
T ss_dssp             SSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred             CCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence            11  34556777899999999999887653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.47  E-value=9.1e-05  Score=62.90  Aligned_cols=36  Identities=19%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRAL  208 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCC
Confidence            478999999999999999997 599999999987653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.47  E-value=6.6e-05  Score=63.97  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            479999999999999999997 599999999977643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.47  E-value=0.00011  Score=63.75  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~   47 (274)
                      +.+|++|||+|++|+.+|.+|+ . |.+|+|+|++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            4689999999999999999997 3 8999999998754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.46  E-value=0.00011  Score=64.18  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--~g~~v~vie~~~~~   47 (274)
                      ..+|++|||+|++|+.+|..|+  +|.+|+|+|++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            4589999999999999999996  49999999998654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.46  E-value=0.00074  Score=58.37  Aligned_cols=92  Identities=14%  Similarity=0.005  Sum_probs=67.9

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--------CcC-----------------------------ChhHHH
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EFI-----------------------------GPKAGD  167 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--------~~~-----------------------------~~~~~~  167 (274)
                      .+++|.+|+.+|..|.+ ..+.+++++.+.+.+.        +..                             .+.+.+
T Consensus        13 IIGaG~aGl~aA~~L~~-~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ei~~   91 (540)
T 3gwf_A           13 VIGAGFGGIYAVHKLHH-ELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILE   91 (540)
T ss_dssp             EECCSHHHHHHHHHHHH-TTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHHHHH
T ss_pred             EECcCHHHHHHHHHHHH-cCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHHHHH
Confidence            35567778888888872 2567899999865321        000                             123455


Q ss_pred             HHHHHHHhCCc--EEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEcccC
Q 023975          168 KTRDWLISKKV--DVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       168 ~~~~~~~~~gv--~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      .+.+.+++.|+  .++.+++|+++..+++  .+.|.+++|+++.||.||+|+|.
T Consensus        92 ~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~  145 (540)
T 3gwf_A           92 YLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL  145 (540)
T ss_dssp             HHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred             HHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence            66677788888  8999999999986654  66788899999999999999995

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.44  E-value=0.00071  Score=56.38  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=67.7

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHH-------------HHHHHHHhCCcEEEcCceeeeec
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD-------------KTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ..+++|..|+..|..|.+.-...+++++.+.+.+. ...+.+..             ...+.+++.|++++.+++++.+.
T Consensus         6 vIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~-y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   84 (410)
T 3ef6_A            6 AIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP-YDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALD   84 (410)
T ss_dssp             EEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS-BCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEEE
T ss_pred             EEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC-cCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEEE
Confidence            34667888999999998544445699998876531 11111211             12245667899999999999987


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+.  ..+.+.+|+++.+|.+|+|||..|..+
T Consensus        85 ~~~--~~v~~~~g~~~~~d~lvlAtG~~p~~~  114 (410)
T 3ef6_A           85 VQT--RTISLDDGTTLSADAIVIATGSRARTM  114 (410)
T ss_dssp             TTT--TEEEETTSCEEECSEEEECCCEEECCC
T ss_pred             CCC--CEEEECCCCEEECCEEEEccCCcccCC
Confidence            543  467778888999999999999876543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.44  E-value=0.00054  Score=58.97  Aligned_cols=94  Identities=19%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc--cC-----------C-cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR--LL-----------E-FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~--~~-----------~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++|..|+..|..+.  ..+.++.++.+...  ..           + ...+.+...+.+.+++.|++++.++++..+.
T Consensus       217 IIGgG~AGl~aA~~la--~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~  294 (521)
T 1hyu_A          217 IVGSGPAGAAAAVYSA--RKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLV  294 (521)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEE
T ss_pred             EECCcHHHHHHHHHHH--hCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence            3566999999999988  45788888865310  00           0 1123466777788888999999999999986


Q ss_pred             cC---CCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          191 VS---EGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       191 ~~---~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+   ++...+.+++|+++.+|.||+|+|..|.
T Consensus       295 ~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          295 PAATEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             CCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             eccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            43   2356788888889999999999997654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.42  E-value=9.2e-05  Score=63.05  Aligned_cols=93  Identities=18%  Similarity=0.287  Sum_probs=56.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEE-eeEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+.....       +..    .....+.+  .++++... .+..+.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-------~~~----~~~l~~~l~~~Gv~v~~~~~v~~i~  248 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVD-------EQV----AKEAQKILTKQGLKILLGARVTGTE  248 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSC-------HHH----HHHHHHHHHHTTEEEEETCEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccC-------HHH----HHHHHHHHHhCCCEEEECCEEEEEE
Confidence            478999999999999999997 5999999999876531110       000    00000000  13444322 122222


Q ss_pred             --cC--eEEeCCC---eEEecCEEEEccCCCCCCC
Q 023975           89 --EN--EVLTAEG---RRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 --~~--~v~~~~~---~~~~~~~li~a~G~~~~~~  116 (274)
                        ..  .+.+.++   .++.+|.+++|+|..|...
T Consensus       249 ~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~  283 (476)
T 3lad_A          249 VKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT  283 (476)
T ss_dssp             ECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred             EcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence              11  3444443   5789999999999886653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.41  E-value=8.7e-05  Score=62.34  Aligned_cols=91  Identities=18%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHH-------------HHHHHHHhCCcEEEcCceeeeec
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGD-------------KTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      -.+++|..|+.+|..|.+..++.+|+++.+++.+.  +.+.+..             .+.+.+++.|++++.+ +|++|.
T Consensus         6 vIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~--~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~Id   82 (430)
T 3hyw_A            6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG--FTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESID   82 (430)
T ss_dssp             EEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE--CGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEEE
T ss_pred             EEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc--cCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEEE
Confidence            34677888999999998666678999999887532  1111111             1234456679999866 688876


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      .+  ...|++++|+++.+|.+|+|||..+
T Consensus        83 ~~--~~~V~~~~g~~i~YD~LViAtG~~~  109 (430)
T 3hyw_A           83 PD--ANTVTTQSGKKIEYDYLVIATGPKL  109 (430)
T ss_dssp             TT--TTEEEETTCCEEECSEEEECCCCEE
T ss_pred             CC--CCEEEECCCCEEECCEEEEeCCCCc
Confidence            44  3467889999999999999999764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.40  E-value=0.0008  Score=53.56  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             cCCchhhhHHHHhhhhCCCCeEEEEeCCCcc------CCc------C-ChhHHHHHHHHHHhCC-cEEEcCceeeeeccC
Q 023975          127 QAGPTGVELAGEIAVDFPEKKVTLVHKGSRL------LEF------I-GPKAGDKTRDWLISKK-VDVKLGERVNLDSVS  192 (274)
Q Consensus       127 ~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~------~~~------~-~~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~  192 (274)
                      ++|+.|+..|..++  ..+.+++++.+....      .+.      . .+.+.+...+.+.+.+ +.+.....+.....+
T Consensus        13 GaGpAGlsAA~~la--r~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (304)
T 4fk1_A           13 GAGPAGLNASLVLG--RARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQS   90 (304)
T ss_dssp             CCSHHHHHHHHHHH--HTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECT
T ss_pred             CCCHHHHHHHHHHH--HCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecC
Confidence            44566777777776  457889999875320      011      1 1234444445555554 555554444333344


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCch
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+...+.+.+|+++.+|.||+|||..|..+
T Consensus        91 ~~~~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           91 TGLFEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             TSCEEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             CCcEEEEECCCCEEEeCEEEEccCCccccc
Confidence            556788899999999999999999876543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.00059  Score=57.60  Aligned_cols=97  Identities=13%  Similarity=0.114  Sum_probs=65.9

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC------cC------ChhHHHHHHHHH-HhCCcEEEcCceeeeec
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE------FI------GPKAGDKTRDWL-ISKKVDVKLGERVNLDS  190 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~------~~------~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~  190 (274)
                      ..+++|..|+..|..|.+..++.+++++.+.+.+..      ..      ...+.....+.+ ++.|++++.++++..+.
T Consensus         7 vIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i~   86 (449)
T 3kd9_A            7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIEVD   86 (449)
T ss_dssp             EEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEEEEEC
T ss_pred             EEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEEEEEe
Confidence            345678889999999986656889999998775311      00      001111122333 67899999999999886


Q ss_pred             cCCCceeEECCCC-cEEeecEEEEcccCCCCch
Q 023975          191 VSEGSDTYLTSTG-DTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       191 ~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~  222 (274)
                      .+  ...+.++++ .++.+|.+|+|||..|..+
T Consensus        87 ~~--~~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           87 TG--YVRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             SS--EEEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             cC--CCEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            43  456777777 4899999999999876543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.38  E-value=0.00056  Score=54.75  Aligned_cols=93  Identities=13%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc-----------cCCcC-----ChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------LLEFI-----GPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      .+++|..|+.+|..+.  ..+.+++++.+...           ..+.+     ...+.+.+.+.+++.|++++.++ +..
T Consensus        10 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~   86 (320)
T 1trb_A           10 ILGSGPAGYTAAVYAA--RANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-INK   86 (320)
T ss_dssp             EECCSHHHHHHHHHHH--TTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-EEE
T ss_pred             EECcCHHHHHHHHHHH--HCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-eeE
Confidence            3456778888888887  45778888875310           01111     13456667777888999999986 888


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +..+++.+.+ +.+++++.+|.+|+|+|..|..
T Consensus        87 i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           87 VDLQNRPFRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             EECSSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             EEecCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence            8776666666 6677889999999999976643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.37  E-value=0.00018  Score=61.46  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=57.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEE
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAIN   86 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   86 (274)
                      ..+|+|||||+.|+.+|..|+     .|.+|+++++.+.+...  .+    .+...........  ..++++... .+..
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~--~l----~~~~~~~~~~~l~--~~GV~v~~~~~V~~  251 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK--IL----PEYLSNWTMEKVR--REGVKVMPNAIVQS  251 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT--TS----CHHHHHHHHHHHH--TTTCEEECSCCEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc--cC----CHHHHHHHHHHHH--hcCCEEEeCCEEEE
Confidence            468999999999999998885     27899999987542110  00    0000000000000  013333322 1122


Q ss_pred             E--ecC--eEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           87 I--TEN--EVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        87 ~--~~~--~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      +  +..  .+.+.+|.++.+|.+|+|+|..|...-
T Consensus       252 i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l  286 (493)
T 1m6i_A          252 VGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVEL  286 (493)
T ss_dssp             EEEETTEEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             EEecCCeEEEEECCCCEEECCEEEECCCCCccHHH
Confidence            2  112  466778889999999999999877643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.35  E-value=0.00013  Score=61.99  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEE--e
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI--T   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~   88 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.+.+......+...+...+.          ..++++... .+..+  +
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~----------~~Gv~i~~~~~v~~i~~~  245 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFR----------AEGIEVLEHTQASQVAHM  245 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHH----------HTTCEEETTCCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHH----------hCCCEEEcCCEEEEEEEe
Confidence            478999999999999999997 599999999987543100000000000000          012233211 11111  1


Q ss_pred             cC--eEEeCCCeEEecCEEEEccCCCCCCC
Q 023975           89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~--~v~~~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ..  .+.++ +.++.+|.+++|+|..|...
T Consensus       246 ~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          246 DGEFVLTTT-HGELRADKLLVATGRTPNTR  274 (467)
T ss_dssp             TTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred             CCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence            22  34454 55899999999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.35  E-value=0.00023  Score=59.30  Aligned_cols=98  Identities=10%  Similarity=-0.020  Sum_probs=68.8

Q ss_pred             HHccCCchhhhHHHHhhh-hCCCCeEEEEeCCCccCC-----------cCChhHHHHHHHHHHhCCcEEEcCceeeeecc
Q 023975          124 NQYQAGPTGVELAGEIAV-DFPEKKVTLVHKGSRLLE-----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSV  191 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~-~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~  191 (274)
                      ..+++|..|+.+|..|.+ ...+.+++++.+++.+..           .....+...+.+.+++.|++++.+ +|+.+..
T Consensus         5 vIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i~~   83 (409)
T 3h8l_A            5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDA   83 (409)
T ss_dssp             EEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEEEET
T ss_pred             EEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEEEeC
Confidence            346778899999999884 226789999998775311           011233445667777889999987 8888876


Q ss_pred             CCCceeEECCCCc----EEeecEEEEcccCCCCchhh
Q 023975          192 SEGSDTYLTSTGD----TINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       192 ~~~~~~v~~~~g~----~~~~d~vv~a~G~~~~~~~~  224 (274)
                      ++..  +.+.+++    ++.+|.||+|+|..|..+.+
T Consensus        84 ~~~~--V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i  118 (409)
T 3h8l_A           84 KSSM--VYYTKPDGSMAEEEYDYVIVGIGAHLATELV  118 (409)
T ss_dssp             TTTE--EEEECTTSCEEEEECSEEEECCCCEECGGGS
T ss_pred             CCCE--EEEccCCcccceeeCCEEEECCCCCcCccCC
Confidence            6554  4444443    49999999999997765433

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.31  E-value=0.00081  Score=53.86  Aligned_cols=93  Identities=18%  Similarity=0.053  Sum_probs=65.2

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCc-----------cCCcC----ChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------LLEFI----GPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      .+++|..|+..|..+.  ..+.+++++.+...           ..+.+    ...+.+.+.+.+++.|++++. .++..+
T Consensus        21 IIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i   97 (319)
T 3cty_A           21 IVGAGAAGFSAAVYAA--RSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVRSI   97 (319)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEEEE
T ss_pred             EECcCHHHHHHHHHHH--hCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEEEE
Confidence            3455677888888887  45788999987421           01111    124556677778888999988 688888


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      ..+++.+.+.+ +++++.+|.+|+|+|..|..
T Consensus        98 ~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           98 KKTQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEeCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence            76666556665 56689999999999976543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.31  E-value=0.00081  Score=53.58  Aligned_cols=92  Identities=17%  Similarity=0.093  Sum_probs=64.9

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEE-EeCCCcc------------CCcCC-----hhHHHHHHHHHHhCCcEEEcCcee
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTL-VHKGSRL------------LEFIG-----PKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~-~~~~~~~------------~~~~~-----~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                      .+++|..|+..|..+.+  .+.++++ +.+. .+            .+...     ..+...+.+.+++.|++++.+ ++
T Consensus         9 IIG~G~aGl~aA~~l~~--~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v   84 (315)
T 3r9u_A            9 IIGGGPAGLSAGLYATR--GGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV-GV   84 (315)
T ss_dssp             EECCSHHHHHHHHHHHH--HTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-CE
T ss_pred             EECCCHHHHHHHHHHHH--CCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-EE
Confidence            45667888999998884  4677888 7763 21            11222     356677778888899999988 78


Q ss_pred             eeeccCC--CceeE-ECCCCcEEeecEEEEcccCCCCch
Q 023975          187 NLDSVSE--GSDTY-LTSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       187 ~~i~~~~--~~~~v-~~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      ..+ .++  +.+.+ ...++ ++.+|.+|+|+|..|..+
T Consensus        85 ~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           85 EQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             EEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             EEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence            888 555  56664 33444 899999999999866543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.27  E-value=0.00052  Score=59.40  Aligned_cols=92  Identities=17%  Similarity=0.052  Sum_probs=67.2

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--------C---------------------------c--CChhHH
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------E---------------------------F--IGPKAG  166 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--------~---------------------------~--~~~~~~  166 (274)
                      ..+++|.+|+.+|..|.  ..+.+++++.+.+.+.        |                           .  ..+.+.
T Consensus        13 vIIGaG~aGl~aA~~L~--~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei~   90 (545)
T 3uox_A           13 VVIGAGVTGIYQAFLIN--QAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEML   90 (545)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHHH
T ss_pred             EEECccHHHHHHHHHHH--hCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHHH
Confidence            34566778888898887  4677899999875421        0                           0  012345


Q ss_pred             HHHHHHHHhCCc--EEEcCceeeeeccCC--CceeEECCCCcEEeecEEEEcccC
Q 023975          167 DKTRDWLISKKV--DVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       167 ~~~~~~~~~~gv--~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ..+.+.+++.++  .+..+++|+++..++  +.+.|.+++|+++.||.||+|+|.
T Consensus        91 ~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~  145 (545)
T 3uox_A           91 RYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGP  145 (545)
T ss_dssp             HHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCS
T ss_pred             HHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence            556666677777  788999999987544  356788899999999999999994

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.26  E-value=0.00071  Score=54.64  Aligned_cols=95  Identities=21%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCc-----------cCCcC-----ChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSR-----------LLEFI-----GPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                      +..+++|..|+..|..+.  ..+.+++++.+...           ..+.+     ...+...+.+.+++.|++++.++ +
T Consensus        17 vvIIG~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v   93 (335)
T 2a87_A           17 VIVIGSGPAGYTAALYAA--RAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-V   93 (335)
T ss_dssp             EEEECCHHHHHHHHHHHH--HTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             EEEECCCHHHHHHHHHHH--hCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-E
Confidence            334556777888888887  34778888875310           01111     13456667777888999999987 8


Q ss_pred             eeeccCCCceeE-ECCCCcEEeecEEEEcccCCCCc
Q 023975          187 NLDSVSEGSDTY-LTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       187 ~~i~~~~~~~~v-~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      ..+.. .+.+.+ .+.+|+++.+|.+|+|+|..|..
T Consensus        94 ~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           94 ESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             EEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence            88876 445667 77788899999999999986643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.26  E-value=0.00071  Score=59.20  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=72.6

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-----------cC-C--hhHHHHHHHHHHhCCcEEEcCceee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----------FI-G--PKAGDKTRDWLISKKVDVKLGERVN  187 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-----------~~-~--~~~~~~~~~~~~~~gv~i~~~~~v~  187 (274)
                      ++..+++|..|+..|..|.+..++.+++++.+.+.+.-           .. .  ..+...+....++.|++++.+++|+
T Consensus        38 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~V~  117 (588)
T 3ics_A           38 KIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSEVV  117 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCEEE
Confidence            35556778889999999986666889999998876310           00 0  1122334455667899999999999


Q ss_pred             eeccCCCceeEEC-CCCc--EEeecEEEEcccCCCCch
Q 023975          188 LDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  222 (274)
Q Consensus       188 ~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  222 (274)
                      .+..+++.+.+.. .+|+  ++.+|.+|+|||..|..+
T Consensus       118 ~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (588)
T 3ics_A          118 KINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP  155 (588)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence            9987777666653 4565  789999999999876543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.22  E-value=0.00014  Score=62.14  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++..
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            468999999999999999997 599999999853

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.21  E-value=0.0011  Score=56.39  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC------Cc-CC------hhH------HHHHHHHH-HhCCcEEEc
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------EF-IG------PKA------GDKTRDWL-ISKKVDVKL  182 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~------~~-~~------~~~------~~~~~~~~-~~~gv~i~~  182 (274)
                      +..+++|..|+.+|..|.+..++.+++++.+.+.+.      +. ..      ..+      .....+.+ ++.|++++.
T Consensus         6 VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~   85 (472)
T 3iwa_A            6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVEALV   85 (472)
T ss_dssp             EEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CEEEC
T ss_pred             EEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcEEEE
Confidence            345677889999999998766689999999887631      11 00      011      11112223 357999999


Q ss_pred             CceeeeeccCCCceeEEC-CCCc--EEeecEEEEcccCCCCc
Q 023975          183 GERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGS  221 (274)
Q Consensus       183 ~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~  221 (274)
                      +++|+.+..+.+.+.+.. .+|+  ++.+|.+|+|||..|..
T Consensus        86 ~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  127 (472)
T 3iwa_A           86 ETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANR  127 (472)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             CCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCC
Confidence            999999987776666553 3455  79999999999987654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.19  E-value=0.00017  Score=61.62  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            468999999999999999997 599999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.12  E-value=0.0008  Score=55.81  Aligned_cols=99  Identities=16%  Similarity=0.065  Sum_probs=66.7

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC----------ChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI----------GPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      +-.+++|..|+.+|..|.+..++.+|+++.+++......          .......-.+.+.+.|++++.+ +|+.|..+
T Consensus         5 VvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~id~~   83 (401)
T 3vrd_B            5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGIDPD   83 (401)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEEETT
T ss_pred             EEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEEEcc
Confidence            334667888999998887656678999998876532110          0000000124456689999865 57777544


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCCCchhh
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~  224 (274)
                        ...+.+.+|+++.+|.+|+|+|..++.+-+
T Consensus        84 --~~~v~~~~g~~i~yd~LviAtG~~~~~~~i  113 (401)
T 3vrd_B           84 --KKLVKTAGGAEFAYDRCVVAPGIDLLYDKI  113 (401)
T ss_dssp             --TTEEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred             --CcEEEecccceeecceeeeccCCccccCCc
Confidence              446778899999999999999987765433

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.07  E-value=0.00075  Score=58.08  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..+++|||+|+.|+.+|..|+ .|.+|+++++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            457999999999999999997 59999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.07  E-value=0.00047  Score=60.46  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ..+++|||||..|+-+|..|+ .|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            468999999999999999997 49999999987

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.06  E-value=0.0016  Score=55.44  Aligned_cols=100  Identities=15%  Similarity=0.029  Sum_probs=68.1

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-cC------------ChhHHHHHHHHH-HhCCcEEEcCceeee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FI------------GPKAGDKTRDWL-ISKKVDVKLGERVNL  188 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~------------~~~~~~~~~~~~-~~~gv~i~~~~~v~~  188 (274)
                      +..+++|..|+.+|..+.+..++.+++++.+.+.... ..            ...+.....+.+ ++.|++++.++.+..
T Consensus        39 vvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v~~  118 (480)
T 3cgb_A           39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTK  118 (480)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEEEE
Confidence            4456667888888988875446889999998765310 00            011111223445 445999999999999


Q ss_pred             eccCCCceeEEC-CCCc--EEeecEEEEcccCCCCch
Q 023975          189 DSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  222 (274)
Q Consensus       189 i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  222 (274)
                      +..+++.+.+.. .+|+  ++.+|.+|+|||..|..+
T Consensus       119 i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p  155 (480)
T 3cgb_A          119 VDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP  155 (480)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence            987666666654 4566  799999999999876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.06  E-value=0.00083  Score=46.88  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ....+|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            34578999999999999999997 5999999999754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.04  E-value=0.003  Score=55.36  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCC
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      +...+.+.+++ .|+++. +++|+++..+++.+ .|.+.+|.++.||.||+|+|..+.
T Consensus       126 ~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          126 YRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             HHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             HHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            45566777777 699994 67899997666654 678888888999999999997654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.93  E-value=0.00092  Score=56.60  Aligned_cols=54  Identities=13%  Similarity=-0.000  Sum_probs=40.0

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccC---CCc--eeEECCCCc----EEeecEEEEcccCCCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVS---EGS--DTYLTSTGD----TINADCHFLCTGKPVG  220 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~---~~~--~~v~~~~g~----~~~~d~vv~a~G~~~~  220 (274)
                      +.+....++.+++++++++|++++.+   ++.  +.|.+.+|+    ++.+|.||+|||..|.
T Consensus       131 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~  193 (463)
T 3s5w_A          131 DYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPR  193 (463)
T ss_dssp             HHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEEC
T ss_pred             HHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCC
Confidence            33444455678999999999999765   222  366666665    8999999999998665

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.91  E-value=0.0012  Score=58.97  Aligned_cols=96  Identities=17%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             CCcEEEEc--CChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEe
Q 023975           13 NKRVVVIG--GGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT   88 (274)
Q Consensus        13 ~~~v~IIG--aG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (274)
                      ..+|+|||  +|..|+.+|..|+ .|.+|+++++.+.+......      ... ...+.... ...+++++.. .+..+.
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~------~~~-~~~l~~~l-~~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN------TFE-VNRIQRRL-IENGVARVTDHAVVAVG  594 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGG------GTC-HHHHHHHH-HHTTCEEEESEEEEEEE
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccccc------chh-HHHHHHHH-HHCCCEEEcCcEEEEEE
Confidence            35799999  9999999999997 59999999988765421100      000 00000000 0124555443 233444


Q ss_pred             cCeEEe-----CCCeEEecCEEEEccCCCCCCC
Q 023975           89 ENEVLT-----AEGRRVVYDYLVIATGHKDPVP  116 (274)
Q Consensus        89 ~~~v~~-----~~~~~~~~~~li~a~G~~~~~~  116 (274)
                      ...+..     .++.++.+|.+|+|+|..|...
T Consensus       595 ~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~  627 (690)
T 3k30_A          595 AGGVTVRDTYASIERELECDAVVMVTARLPREE  627 (690)
T ss_dssp             TTEEEEEETTTCCEEEEECSEEEEESCEEECCH
T ss_pred             CCeEEEEEccCCeEEEEECCEEEECCCCCCChH
Confidence            442222     2456789999999999987654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.83  E-value=0.0018  Score=54.71  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~   47 (274)
                      ..++|+|||||..|+-+|..+. .|. +|+++++.+..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999998876 477 59999998754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.81  E-value=0.0066  Score=53.04  Aligned_cols=56  Identities=14%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCCc
Q 023975          165 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       165 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +...+.+.+++ .|+++. +.+|+++..+++.+ .|.+.+|+++.||.||+|||..++.
T Consensus       125 ~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          125 YREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             HHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             HHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence            45566677777 599995 67899987666654 5888889899999999999976543

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.81  E-value=0.0049  Score=53.30  Aligned_cols=93  Identities=15%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--------Cc-------------CC----------------hhHH
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EF-------------IG----------------PKAG  166 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--------~~-------------~~----------------~~~~  166 (274)
                      ..+++|.+|+.+|..|.+  .+.++.++.+.+.+.        +.             +.                +.+.
T Consensus        20 vIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i~   97 (542)
T 1w4x_A           20 LVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEIL   97 (542)
T ss_dssp             EEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHHH
T ss_pred             EEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHHH
Confidence            344556778888888873  477888888765320        10             01                1233


Q ss_pred             HHHHHHHHhCC--cEEEcCceeeeeccCCC--ceeEECCCCcEEeecEEEEcccCC
Q 023975          167 DKTRDWLISKK--VDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       167 ~~~~~~~~~~g--v~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +.+...+++.+  ..+..+++|.+++.+++  .+.|.+++|+++.||.||+|+|..
T Consensus        98 ~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           98 RYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence            34444455555  67899999999876543  567888889899999999999964

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.78  E-value=0.0011  Score=46.22  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            468999999999999999997 5999999998653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.74  E-value=0.0014  Score=46.52  Aligned_cols=34  Identities=35%  Similarity=0.577  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|+|+|..|..+|..|+ .|++|+++++++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999999999999999997 5999999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.58  E-value=0.0019  Score=43.27  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~   45 (274)
                      +++|+|+|+|..|..++..|. .| ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999998886 58 8999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.0033  Score=53.71  Aligned_cols=97  Identities=16%  Similarity=0.032  Sum_probs=65.4

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC----------cCCh---hHHHHHHHHHHhCCcEEEcCceeee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGP---KAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~---~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      .+..+++|..|+..|..+.+  . .+++++.+.+.+..          .+..   .+...+.+.+ +.|++++.++.+.+
T Consensus       110 dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~  185 (493)
T 1y56_A          110 DVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG  185 (493)
T ss_dssp             SCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred             CEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence            35566778999999999984  3 88999998765411          0111   1222223333 56999999999988


Q ss_pred             eccCCCceeEEC-CCCc--EEeecEEEEcccCCCCch
Q 023975          189 DSVSEGSDTYLT-STGD--TINADCHFLCTGKPVGSD  222 (274)
Q Consensus       189 i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~~~  222 (274)
                      +..+++.+.+.. ++++  ++.+|.+|+|||..|...
T Consensus       186 i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          186 VFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             CEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            876665554433 4454  689999999999876543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0024  Score=44.20  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|+|||+|..|...|..|. .|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999997 599999999864

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=96.40  E-value=0.0016  Score=54.66  Aligned_cols=44  Identities=18%  Similarity=0.352  Sum_probs=38.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecccee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR   55 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~   55 (274)
                      ..+||+|||||++|+++|..|+ +|++|+|+|+++.+|+.+....
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~   49 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSIT   49 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccc
Confidence            4589999999999999999998 5999999999999987655443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.40  E-value=0.0041  Score=43.95  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+++|+|+|..|...|..|. .|++|+++|+.+
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            68999999999999999997 599999999863

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=96.39  E-value=0.012  Score=47.56  Aligned_cols=95  Identities=18%  Similarity=0.083  Sum_probs=61.1

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC--------------------------------------cCChhHHH
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--------------------------------------FIGPKAGD  167 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~--------------------------------------~~~~~~~~  167 (274)
                      +++|..|+..|..+.+..++.++.++.+.+.+..                                      .....+.+
T Consensus        85 VGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~~d~~~  164 (344)
T 3jsk_A           85 VGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTS  164 (344)
T ss_dssp             ECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHH
T ss_pred             ECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecHHHHHH
Confidence            3446778888888875335778888887653210                                      00122345


Q ss_pred             HHHHHHHh-CCcEEEcCceeeeeccCC-----------------C--ce-eEEC------C--------CCcEEeecEEE
Q 023975          168 KTRDWLIS-KKVDVKLGERVNLDSVSE-----------------G--SD-TYLT------S--------TGDTINADCHF  212 (274)
Q Consensus       168 ~~~~~~~~-~gv~i~~~~~v~~i~~~~-----------------~--~~-~v~~------~--------~g~~~~~d~vv  212 (274)
                      .+.+.+.+ .|++++.++.+.++..++                 +  .+ .++.      .        +..++.|+.||
T Consensus       165 ~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV  244 (344)
T 3jsk_A          165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVII  244 (344)
T ss_dssp             HHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEE
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEE
Confidence            56666766 599999999999887654                 1  11 2222      1        23479999999


Q ss_pred             EcccCCCC
Q 023975          213 LCTGKPVG  220 (274)
Q Consensus       213 ~a~G~~~~  220 (274)
                      .|||....
T Consensus       245 ~ATG~~s~  252 (344)
T 3jsk_A          245 STTGHDGP  252 (344)
T ss_dssp             ECCCSSSS
T ss_pred             ECCCCCch
Confidence            99997543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.33  E-value=0.013  Score=50.11  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~   46 (274)
                      ..++|+|||+|-+|.-++..|+   .+.+|+++-|.+.
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~  282 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSA  282 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSS
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            3578999999999999998885   3789999998764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.29  E-value=0.0021  Score=59.51  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      .+|+|||+|+.|+.+|..|++ |.+|+|+|+.+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~  320 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS  320 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence            689999999999999999974 99999999987653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.22  E-value=0.0065  Score=51.97  Aligned_cols=98  Identities=10%  Similarity=0.037  Sum_probs=63.0

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--C--------cCCh-hHHHHHHHHH--HhCCcEEEcCceeee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--E--------FIGP-KAGDKTRDWL--ISKKVDVKLGERVNL  188 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--~--------~~~~-~~~~~~~~~~--~~~gv~i~~~~~v~~  188 (274)
                      ++-.+++|+.|+.+|..|.  ..+.+|+++.+++.++  |        ..++ .+...+.+.+  ++.+++++. .++++
T Consensus        44 rVVIIGgG~AGl~~A~~L~--~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~-~~v~~  120 (502)
T 4g6h_A           44 NVLILGSGWGAISFLKHID--TKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYE-AEATS  120 (502)
T ss_dssp             EEEEECSSHHHHHHHHHSC--TTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE-EEEEE
T ss_pred             CEEEECCcHHHHHHHHHhh--hCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEE-EEEEE
Confidence            4666777888999999887  5678999999886531  1        0111 1111233333  234677765 36777


Q ss_pred             eccCCCceeEE------------------CCCCcEEeecEEEEcccCCCCch
Q 023975          189 DSVSEGSDTYL------------------TSTGDTINADCHFLCTGKPVGSD  222 (274)
Q Consensus       189 i~~~~~~~~v~------------------~~~g~~~~~d~vv~a~G~~~~~~  222 (274)
                      |..+...+.+.                  ..++.++.+|.+|+|||..|+..
T Consensus       121 ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          121 INPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             EEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            76555544432                  24567899999999999887643

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.21  E-value=0.0046  Score=52.14  Aligned_cols=34  Identities=38%  Similarity=0.475  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..++|+|||.|.+|+++|..|+ +|++|++.|+.+
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3579999999999999999887 699999999865

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.15  E-value=0.0057  Score=48.60  Aligned_cols=35  Identities=37%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+++|.|||+|.-|...|..|. .|++|+++|+++.
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3468999999999999998886 5999999998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.15  E-value=0.0046  Score=42.94  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +.+|+|+|+|..|...|..|. .|++|+++|+.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999999999999999997 599999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=96.14  E-value=0.0063  Score=51.36  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=37.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS   53 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~   53 (274)
                      ..+||+|||||++||++|..|+ .|++|+|+|+++.+|+....
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            3589999999999999999998 49999999999999977554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.14  E-value=0.0073  Score=45.54  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..++|+|||||..|...|..|. .|++|+|+++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4579999999999999998886 599999999753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.07  E-value=0.0078  Score=48.51  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .++..+|+|||+|..|.+.|..|+ .|+ +|+++|..+.
T Consensus         6 ~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            6 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            334468999999999999999997 587 9999998764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.06  E-value=0.0083  Score=43.77  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~   46 (274)
                      ..+|+|+|+|..|...|..|. . |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            458999999999999999996 6 999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.98  E-value=0.0066  Score=48.71  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|+|||+|..|.+.|..|+ .|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            58999999999999999997 499999999975

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.97  E-value=0.0047  Score=51.92  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|+|||.|.+|+++|..|+ +|++|+++|....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            468999999999999998886 5999999998664

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.89  E-value=0.0099  Score=48.39  Aligned_cols=35  Identities=20%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.++|.|||+|.-|.+.|..|+ .|++|+++++++.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3468999999999999999997 4999999998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.88  E-value=0.0085  Score=49.91  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      .++|.|||+|..|+..|..|++|++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQNHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHcCCeEEEEecCHH
Confidence            3689999999999999998877999999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.82  E-value=0.0089  Score=49.19  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|||+|.+|+.+|..|+ .|++|+++|+...
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999887 5999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.82  E-value=0.0017  Score=58.30  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CCcEEEEc--CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIG--GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIG--aG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|||  ||..|+-+|..|+ .|.+|+++++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            46899999  9999999999997 599999999987

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.80  E-value=0.0072  Score=48.28  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|+|||+|..|.+.|..|+ .|++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            58999999999999999997 599999999975

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.79  E-value=0.0066  Score=47.27  Aligned_cols=34  Identities=35%  Similarity=0.583  Sum_probs=29.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.|+|||||..|...|..|. .|++|+|+++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4579999999999999999887 599999999754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=95.75  E-value=0.0087  Score=50.73  Aligned_cols=42  Identities=24%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCceeeccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITWAS   53 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~g~~~~~   53 (274)
                      ..+||+|||||++|+++|+.|+ .|+ +|+|+|+++.+|+.+..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            3579999999999999999997 498 89999999998866543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.68  E-value=0.0079  Score=45.29  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6999999999999999997 5999999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.67  E-value=0.01  Score=48.41  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|||+|..|+.+|..|+ .|.+|+++|++..
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            469999999999999999987 4999999998753

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.63  E-value=0.012  Score=46.59  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            468999999999999999997 5999999998765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.62  E-value=0.013  Score=46.06  Aligned_cols=34  Identities=32%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            368999999999999999887 5999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.57  E-value=0.013  Score=46.83  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4578999999999999999997 5999999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.50  E-value=0.01  Score=46.93  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|+|||+|.-|.+.|..|+ .|++|++++|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            58999999999999999997 499999999874

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.49  E-value=0.009  Score=50.52  Aligned_cols=88  Identities=11%  Similarity=-0.025  Sum_probs=61.0

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC--------CcC--ChhHHHHHHHHHHhCCcEEEcCceeeeeccC
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL--------EFI--GPKAGDKTRDWLISKKVDVKLGERVNLDSVS  192 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~  192 (274)
                      +..+++|..|+.+|..+....++.+++++.+.+.+.        +..  ...+...+.+.+++.|++++.++.+.     
T Consensus         9 vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-----   83 (460)
T 1cjc_A            9 ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-----   83 (460)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-----
T ss_pred             EEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-----
Confidence            344667888999999988543448999999887653        211  12455667777888999999987652     


Q ss_pred             CCceeEECCCCcEEeecEEEEcccCCC
Q 023975          193 EGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       193 ~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                       .  .+.+++. .+.+|.||+|||..+
T Consensus        84 -~--~V~~~~~-~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 -R--DVTVQEL-QDAYHAVVLSYGAED  106 (460)
T ss_dssp             -T--TBCHHHH-HHHSSEEEECCCCCE
T ss_pred             -e--EEEeccc-eEEcCEEEEecCcCC
Confidence             1  1223332 478999999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.47  E-value=0.011  Score=47.16  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|+|||+|.-|...|..++ .|++|+++|..+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            68999999999999998876 6999999998754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.46  E-value=0.0079  Score=50.83  Aligned_cols=33  Identities=24%  Similarity=0.547  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|+|+|-.|...|..|. .|++|+++|+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            58999999999999999997 5999999998764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.46  E-value=0.018  Score=46.14  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ..+|+|||+|..|.+.|..|. .|+ +|+++|+.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            468999999999999999887 588 9999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.43  E-value=0.0077  Score=48.23  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~   45 (274)
                      .++++|.|||.|..|...|..|. .| ++|+++++++
T Consensus        22 ~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           22 SMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             TSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            34578999999999999999997 49 9999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.30  E-value=0.021  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      .++|.|||.|..|.+.|..|+ .|+  +|+++++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            368999999999999999987 588  9999998753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.28  E-value=0.019  Score=45.73  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (274)
                      ++|+|||+|..|.+.|..|+.|++|++++|++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            58999999999999998887889999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.23  E-value=0.02  Score=45.99  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~-~A~~L~-~g~~v~vie~~~~   46 (274)
                      +++|.|||.|.+|++ +|..|+ +|++|++.|+.+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999997 677775 6999999998754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.23  E-value=0.017  Score=45.98  Aligned_cols=32  Identities=34%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999997 599999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.22  E-value=0.021  Score=42.61  Aligned_cols=34  Identities=18%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999997 5999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.22  E-value=0.014  Score=40.74  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|||+|..|...|..|. .|++|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            478999999999999999887 588999999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.20  E-value=0.0061  Score=51.50  Aligned_cols=86  Identities=8%  Similarity=-0.070  Sum_probs=59.7

Q ss_pred             HHccCCchhhhHHHHhhh-hCC----CCeEEEEeCCCccCC--------c--CChhHHHHHHHHHHhCCcEEEcCceeee
Q 023975          124 NQYQAGPTGVELAGEIAV-DFP----EKKVTLVHKGSRLLE--------F--IGPKAGDKTRDWLISKKVDVKLGERVNL  188 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~-~~~----~~~v~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~gv~i~~~~~v~~  188 (274)
                      ..+++|..|+..|..+.. ..+    +.+++++.+.+.+..        .  ....+...+.+.+++.|++++.+..+  
T Consensus         7 vIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v~v--   84 (456)
T 1lqt_A            7 AIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVV--   84 (456)
T ss_dssp             EEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCCB--
T ss_pred             EEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeEEE--
Confidence            345678889999988875 333    789999998865431        1  12246667777788889999987543  


Q ss_pred             eccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          189 DSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       189 i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                          +.  .+.++++ ++.+|.||+|||..
T Consensus        85 ----~~--~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           85 ----GE--HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             ----TT--TBCHHHH-HHHSSEEEECCCCC
T ss_pred             ----CC--EEEECCC-eEeCCEEEEeeCCC
Confidence                11  2334444 47899999999986

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=95.19  E-value=0.019  Score=46.89  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      |++|+|+|||..|..+|+.+++ |++|+++|.++.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4789999999999999999985 999999997654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.15  E-value=0.027  Score=45.13  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      +.+|+|||+|..|.++|..|+ +|+ +|+++|.++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            368999999999999998887 577 8999998654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.13  E-value=0.019  Score=48.29  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|+..|..|+ .|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            58999999999999999997 599999999875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.12  E-value=0.021  Score=44.82  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||+|..|...|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            6999999999999999997 5999999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.08  E-value=0.021  Score=45.69  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      +++|+|||+|..|.+.|..|. .|+  +|+++|+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            358999999999999999987 588  999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.05  E-value=0.021  Score=47.28  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|||+|.+|+.+|..++ .|.+|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            468999999999999999887 5999999998754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.02  E-value=0.029  Score=44.77  Aligned_cols=32  Identities=41%  Similarity=0.522  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~   44 (274)
                      ..+|.|||+|..|.++|..|. .|+ +++++|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            468999999999999999986 588 99999987

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.01  E-value=0.029  Score=45.08  Aligned_cols=33  Identities=36%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .+|+|||+|..|.+.|..|+ .|+ +|+++|.++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            58999999999999998887 587 9999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.01  E-value=0.025  Score=46.54  Aligned_cols=34  Identities=32%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|||+|.+|+.+|..++ .|.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            479999999999999999887 5999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.94  E-value=0.027  Score=45.43  Aligned_cols=31  Identities=16%  Similarity=0.476  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ++|+|||+|..|.+.|..|+ .|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            58999999999999999997 59999999985

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.92  E-value=0.023  Score=46.45  Aligned_cols=31  Identities=29%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|.|||+|..|.+.|..|. .|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            8999999999999999997 499999999874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.87  E-value=0.031  Score=44.74  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=28.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ++.+|+|||+|..|.+.|..|. .+.  +++++|..+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3469999999999999999887 465  899999764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.84  E-value=0.025  Score=47.94  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|.|||+|..|+..|..|+ .|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999997 599999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.83  E-value=0.033  Score=44.34  Aligned_cols=32  Identities=38%  Similarity=0.566  Sum_probs=28.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ++|+|||+|..|...|..|. .|+ +++++|..+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            58999999999999999886 575 899999765

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.80  E-value=0.026  Score=45.04  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      +++|.|||.|..|...|..|. .|+ +|+++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            578999999999999999997 499 999999963

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.77  E-value=0.035  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|.|||+|..|...|..|. .|++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            368999999999999998886 5999999998754

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.72  E-value=0.03  Score=45.71  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=29.6

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (274)
                      |..++++|+|+|||..|-.+|..|++.++|++.++..
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~   48 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN   48 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH
Confidence            3344578999999999999999999888999988754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.70  E-value=0.037  Score=44.38  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ...+|+|||+|..|.++|..|. .|+  +++++|..+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            3568999999999999999886 465  899999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.66  E-value=0.031  Score=45.41  Aligned_cols=32  Identities=28%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|...|..|+ .|++|+++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999987 599999999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.65  E-value=0.032  Score=45.54  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..+|+|+|||.+|+.+|..|. .|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            469999999999999998886 488 999999874

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.60  E-value=0.044  Score=46.05  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            468999999999999998887 5999999999865

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.60  E-value=0.041  Score=43.20  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++++|.|||+ |..|...|..|. .|++|+++++++
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3468999999 999999999986 599999999865

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.57  E-value=0.025  Score=45.12  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=28.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-----C-CcEEEEcC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-----S-ADVTLIDP   43 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-----g-~~v~vie~   43 (274)
                      ++++|.|||+|..|...|..|. .     | ++|+++++
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3358999999999999998886 5     8 99999998

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.56  E-value=0.029  Score=44.12  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            57999999999999999987 5999999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.55  E-value=0.036  Score=44.18  Aligned_cols=32  Identities=31%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~   46 (274)
                      +|+|||+|..|.+.|..|+.   +++|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            79999999999999988863   789999999764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=94.53  E-value=0.038  Score=46.76  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=35.0

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      ...+||+|||||++||++|+.|++ |++|+|+|+++.+|+..
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~   55 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV   55 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee
Confidence            446899999999999999999985 99999999999988554

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.52  E-value=0.053  Score=48.14  Aligned_cols=84  Identities=24%  Similarity=0.194  Sum_probs=59.4

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------cCC--hhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIG--PKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      ++..+++|..|+..|..+.  ..+.+++++.+.+.+..         ...  ..+...+.+.+++.|++++.++.+... 
T Consensus       375 ~vvIIGgG~AGl~aA~~l~--~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-  451 (671)
T 1ps9_A          375 NLAVVGAGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD-  451 (671)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS-
T ss_pred             eEEEECCCHHHHHHHHHHH--hCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecHH-
Confidence            4566777999999999998  56889999998765421         111  123344566677889999998865421 


Q ss_pred             cCCCceeEECCCCcEE-eecEEEEcccCCCCch
Q 023975          191 VSEGSDTYLTSTGDTI-NADCHFLCTGKPVGSD  222 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~-~~d~vv~a~G~~~~~~  222 (274)
                                    .+ .+|.||+|||..|..+
T Consensus       452 --------------~~~~~d~lviAtG~~p~~~  470 (671)
T 1ps9_A          452 --------------QLQAFDETILASGIVPRTP  470 (671)
T ss_dssp             --------------SSCCSSEEEECCCEEECCC
T ss_pred             --------------HhhcCCEEEEccCCCcCCC
Confidence                          13 7999999999876543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.51  E-value=0.037  Score=43.92  Aligned_cols=34  Identities=21%  Similarity=0.078  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            468999999999999999987 5999999998753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.51  E-value=0.015  Score=54.27  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=64.4

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCC-eEEEEeCCCccC-------C--cCChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEK-KVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~-~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      ..++..+++|..|+..|..|.  ..+. +|+++.+.+.+.       +  .......+...+.+++.||+++.++.+.. 
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~--~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLA--RLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE-  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHH--HTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST-
T ss_pred             CCEEEEECccHHHHHHHHHHH--hcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc-
Confidence            345667788999999999998  4566 699999876532       1  12334555566778889999999887632 


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccC-CCC
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGK-PVG  220 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~-~~~  220 (274)
                          .  .+.+++++++.+|.||+|||. .|.
T Consensus       264 ----~--~v~~~~~~~~~~d~vvlAtGa~~p~  289 (1025)
T 1gte_A          264 ----N--EITLNTLKEEGYKAAFIGIGLPEPK  289 (1025)
T ss_dssp             ----T--SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred             ----c--eEEhhhcCccCCCEEEEecCCCCCC
Confidence                1  233344455789999999997 354

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.46  E-value=0.044  Score=43.22  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      .+++|.|||+|.-|...|..|+.|++|+++|+++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~laaG~~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIASKHEVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHHcCCEEEEEECCHH
Confidence            35899999999999998876668999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.44  E-value=0.038  Score=44.99  Aligned_cols=33  Identities=36%  Similarity=0.470  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPK   44 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~   44 (274)
                      ...+|+|+|||-+|..+|..|. .|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3479999999999999999886 587 89999997

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.44  E-value=0.09  Score=46.15  Aligned_cols=42  Identities=31%  Similarity=0.566  Sum_probs=37.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS   53 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~   53 (274)
                      ++||++|||+|..|...|..|+ .|.+|+++||+++.|+.|..
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            4699999999999999999997 59999999999999977653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.40  E-value=0.042  Score=43.65  Aligned_cols=31  Identities=35%  Similarity=0.535  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      +|+|||+|..|.+.|..|+ .|+  +|+++|.++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            7999999999999999887 588  899999875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.39  E-value=0.04  Score=45.63  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~   45 (274)
                      +|.|||+|..|+..|..|++|++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999999999999987799999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.37  E-value=0.035  Score=45.26  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+|+|+|+|.+|+.++..|+ .|++|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            368999999999999999887 599999999874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.36  E-value=0.043  Score=46.04  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368999999999999999997 5999999998764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.35  E-value=0.046  Score=46.24  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c-CC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F-SA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~-g~-~v~vie~~~~   46 (274)
                      .++|.|||+|..|+..|..|+ . |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            368999999999999998886 7 89 9999998876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.35  E-value=0.043  Score=42.20  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3689999999999999999975 86 899999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.34  E-value=0.046  Score=45.65  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.+|.|||.|..||..|..|+ +|++|+.+|-++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4579999999999999999998 699999999654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.30  E-value=0.044  Score=41.10  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +++|.|||+|..|...|..|. .|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999999999998886 599999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.26  E-value=0.046  Score=42.71  Aligned_cols=34  Identities=9%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +++|+|.|||..|...+..|. +|++|+++.|.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            468999999999999999886 6999999998653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.24  E-value=0.042  Score=43.19  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..|...|..|. .|++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            57999999999999999987 5999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.23  E-value=0.057  Score=45.64  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468999999999999999987 5999999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.22  E-value=0.045  Score=45.49  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|||.|..|...|..|. .|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            357999999999999999997 5999999998754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.22  E-value=0.069  Score=44.39  Aligned_cols=53  Identities=9%  Similarity=-0.031  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP  218 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~  218 (274)
                      +.....+..+..+.+++++++|++|+.+++.+.|.+.+|+ +.||.||+|++..
T Consensus       205 ~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             HHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             HHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            3333333344456678999999999888777888888875 9999999999853

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.13  E-value=0.048  Score=43.94  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +..+|.|||+|.-|...|..|. .|++|+++++.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3469999999999999999886 599999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.12  E-value=0.029  Score=42.28  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEE-EcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTL-IDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~v-ie~~~~   46 (274)
                      +++|.|||+|..|.+.|..|. .|++|++ +++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            368999999999999999987 5999999 887654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.08  E-value=0.061  Score=46.78  Aligned_cols=41  Identities=27%  Similarity=0.416  Sum_probs=35.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeecc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA   52 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~   52 (274)
                      ..+||+|||||++|+++|+.|+ +|++|+|+|+.+..++...
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~GtS~   72 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGTSS   72 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            4589999999999999999997 5999999999876554443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.07  E-value=0.05  Score=44.52  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ...|+|+|+|..|..+|..|+ .|++|+++++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            478999999999999999887 599999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.03  E-value=0.053  Score=41.57  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|.-|.+.|..|. .|++|+++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            579999999999999999987 5999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.01  E-value=0.052  Score=44.56  Aligned_cols=33  Identities=39%  Similarity=0.490  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ...|+|||+|..|..+|..++ .|++|+++|+..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            478999999999999999887 599999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.98  E-value=0.071  Score=42.66  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      +.+|+|||+|..|.++|..|. .|+ +++++|..+.
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            368999999999999999886 577 9999998764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.98  E-value=0.034  Score=42.27  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=28.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ...+++|+|+|..|...|..|. .|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3468999999999999999997 488 999998754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.97  E-value=0.065  Score=41.61  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++++|||+|-+|-++|+.|. .|.+|+|+.|+..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999997 4899999998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.96  E-value=0.075  Score=42.04  Aligned_cols=34  Identities=24%  Similarity=0.550  Sum_probs=29.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIG-aG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+|.||| +|..|.+.|..|+ .|++|+++++++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            46899999 9999999999997 4999999998653

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.93  E-value=0.06  Score=42.69  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      +.+|+|||+|..|.++|+.|. +|+  +++|+|..+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            468999999999999998886 577  8999998763

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.87  E-value=0.045  Score=45.89  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|.|||+|..|+..|..|+ .|++|+++|+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6999999999999999987 599999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.84  E-value=0.045  Score=46.18  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|||+|..|...|..|. .|++|+|+++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            578999999999999998886 599999999853

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.78  E-value=0.059  Score=43.08  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|||+|.-|.+.|..|+ .|++|+++ +.+
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999997 59999999 654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.74  E-value=0.082  Score=42.00  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|.-|...|..|. .|++|+++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999987 5999999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.74  E-value=0.055  Score=44.35  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-------CcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-------ADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-------~~v~vie~~~~   46 (274)
                      +++|.|||+|.-|.+.|..|. .|       ++|+++++.+.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            358999999999999999886 48       99999998765

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.73  E-value=0.068  Score=45.35  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            368999999999999998887 5999999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.73  E-value=0.065  Score=40.57  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+.|+|.|| |..|...+..|. +|++|+++.|++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            3578999998 999999998886 6999999998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.73  E-value=0.063  Score=42.71  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~   45 (274)
                      ++|+|||+|..|.+.|..|. .|  ++|+++|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            48999999999999999986 47  7999999865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.71  E-value=0.061  Score=43.21  Aligned_cols=29  Identities=24%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDP   43 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~   43 (274)
                      +|.|||+|..|...|..|. .|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            6999999999999999997 4999999998

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.69  E-value=0.066  Score=43.55  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            468999999999999999997 5999999998753

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.68  E-value=0.11  Score=41.67  Aligned_cols=34  Identities=26%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      ..+|.|||+|..|.++|+.|. +|.  +++++|..+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~   57 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMED   57 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHH
Confidence            479999999999999999886 465  8999998653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.63  E-value=0.074  Score=41.44  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|+|+|-+|.++|..|. .|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            468999999999999999987 599999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.61  E-value=0.064  Score=42.89  Aligned_cols=34  Identities=15%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|..|...|..|. .|++|+++++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            468999999999999999987 5999999998754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.58  E-value=0.064  Score=40.27  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=29.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +++|+|.|| |..|...+..|. +|++|+++.|.+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            468999996 999999998886 5999999999753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.58  E-value=0.061  Score=42.50  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|.|||+|..|...|..|. .|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            368999999999999998886 599999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=93.54  E-value=0.073  Score=45.19  Aligned_cols=41  Identities=32%  Similarity=0.313  Sum_probs=36.5

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      .+.+||+|||||++||+||+.|++ |++|+|+|+.+.+|+..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~   50 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV   50 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCce
Confidence            346899999999999999999984 99999999999988653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.52  E-value=0.068  Score=45.24  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~   45 (274)
                      ++|.|||.|..|+..|..|+ .  |++|+++|+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            58999999999999998886 5  79999999864

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=93.44  E-value=0.1  Score=43.47  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..++|+|+|+|..|...+..+++ |++|.+++..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            35789999999999999999875 999999987543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.41  E-value=0.11  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|.|+|..|...+..|. +|++|+++.|...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            58999999999999998886 6999999998754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.40  E-value=0.1  Score=41.68  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .+|+|||+|..|.++|..|. .+. ++.++|..+.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            68999999999999998886 466 9999998764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=93.38  E-value=0.1  Score=42.97  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..+.|+|||+|..|..+|..+++ |++|++++..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            34789999999999999999984 999999987653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.37  E-value=0.084  Score=44.84  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~   45 (274)
                      +++|.|||.|..|+..|..|+ .  |++|+++|+++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            358999999999999999886 4  79999999754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.36  E-value=0.096  Score=41.41  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      .++++|||+|.+|.++|..|. .|. +|++++|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            468999999999999999997 487 899999874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.33  E-value=0.081  Score=41.74  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.|.|||+|..|..+|..|+ .|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3578999999999999999997 599999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.33  E-value=0.081  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..++|.|||+|..|..+|..|+ .|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999999999999999987 599999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=93.32  E-value=0.066  Score=44.34  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.|+|||.|..|..+|..|+ .|.+|+++|+.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3579999999999999999997 599999999865

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.30  E-value=0.089  Score=39.14  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=27.7

Q ss_pred             cEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIG-aG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+||| +|..|...|..|. .|++|+++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            699999 9999999998886 599999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.29  E-value=0.068  Score=42.17  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|...|..|. .|++|+++++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            58999999999999999886 5999999998653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.29  E-value=0.1  Score=40.01  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC----cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA----DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~----~v~vie~~~~   46 (274)
                      ++|.|||+|..|.+.|..|. .|+    +|+++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            58999999999999999886 587    9999998753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.28  E-value=0.08  Score=42.34  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      +|+|||+|..|.+.|..|. .|+  +|+++|+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            6999999999999998886 588  999999874

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.27  E-value=0.083  Score=41.41  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|...|..|.+|++|+++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            479999999999999987744999999998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.26  E-value=0.089  Score=41.12  Aligned_cols=32  Identities=28%  Similarity=0.367  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ++|.|||+|..|.+.|..|. .|+  +|+++++++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            47999999999999999987 488  899999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=93.26  E-value=0.061  Score=46.12  Aligned_cols=52  Identities=17%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhC--CcEEEcCceeeeeccC-CCceeEECCCCcEEeecEEEEcccC
Q 023975          166 GDKTRDWLISK--KVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       166 ~~~~~~~~~~~--gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ...+.+.+.+.  +.+|+++++|++|..+ ++.+.|++.+|+++.||.||+|++.
T Consensus       201 ~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          201 YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCH
Confidence            34444444332  3579999999999875 5678888999989999999999874

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.17  E-value=0.066  Score=44.33  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c-CCcEEEEc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F-SADVTLID   42 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie   42 (274)
                      ++|+|||+|..|.+.|..|+ . |++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            48999999999999999995 4 99999999

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.15  E-value=0.084  Score=44.54  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      .++|+|+|||-.|...|..|.++++|.++|+...
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~  268 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQ  268 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             ccEEEEEcchHHHHHHHHHhhhcCceEEEecCHH
Confidence            4689999999999999999988899999999764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=93.12  E-value=0.094  Score=44.21  Aligned_cols=34  Identities=29%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.++|+|+|..|.++|..|+ .|++|+++|+.+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999999999999997 599999999864

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.92  E-value=0.031  Score=42.34  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      .++|.|||.|..|.+.|..|+ .|++|+.+++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            358999999999999999997 59999999884

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=92.92  E-value=0.13  Score=41.09  Aligned_cols=33  Identities=39%  Similarity=0.590  Sum_probs=27.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ..+|+|||+|..|.+.|+.|. .+.  +++++|..+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            469999999999999998886 353  799999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.87  E-value=0.1  Score=41.14  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      +|+|||+|..|.+.|..|. .++  +++++|..+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            7999999999999999886 476  8999998653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.83  E-value=0.11  Score=40.62  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||+|..|.+.|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   34 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6999999999999999886 5999999998643

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.80  E-value=0.13  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||+|..|...|..|. .|++|.++++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~   37 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   37 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            58999999999999999887 4899999998643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.78  E-value=0.11  Score=40.13  Aligned_cols=31  Identities=23%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~   45 (274)
                      +|.|||+|..|...|..|. .| ++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            6999999999999999886 48 9999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.69  E-value=0.14  Score=45.79  Aligned_cols=34  Identities=38%  Similarity=0.500  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            468999999999999999987 5999999998754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.65  E-value=0.12  Score=41.42  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC----CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS----ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g----~~v~vie~~~~   46 (274)
                      ++|.|||+|.-|.+.|..|. .|    ++|+++++++.
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            57999999999999999886 47    89999998753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=92.64  E-value=0.11  Score=44.01  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ....|+|||.|..|..+|..|+ .|++|+++|+.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999997 599999999865

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.63  E-value=0.14  Score=40.95  Aligned_cols=33  Identities=39%  Similarity=0.537  Sum_probs=27.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~   45 (274)
                      ..+|+|||+|..|.+.|..|. ++  .++.++|..+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            369999999999999998886 45  4899999754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.62  E-value=0.13  Score=39.65  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC----CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS----ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g----~~v~vie~~~~   46 (274)
                      ++|.|||+|.-|.+.|..|. .|    ++|+++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            58999999999999999886 48    79999998754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.62  E-value=0.12  Score=41.13  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=28.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      ++|+|||+|..|.++|+.|. .+.  +++++|..+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            37999999999999999886 465  8999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.60  E-value=0.11  Score=40.63  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .++++|||+|-+|-++|..|. .|. +|+++.|+..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            468999999999999999997 488 8999998753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=92.59  E-value=0.14  Score=40.93  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=28.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ...+|+|||+|..|.++|+.|. .+.  ++.++|..+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            3468999999999999999986 455  899999854

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.53  E-value=0.11  Score=40.86  Aligned_cols=32  Identities=28%  Similarity=0.236  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +|.|||+|..|...|..|. .|++|+++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6999999999999998886 5999999998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.52  E-value=0.083  Score=41.17  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++++|+|+|-+|.++|..|. .|.+|++++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999999999987 589999999874

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=92.45  E-value=0.18  Score=41.36  Aligned_cols=35  Identities=34%  Similarity=0.532  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..+.|+|||+|..|...+..+++ |++|++++..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35789999999999999999985 999999997654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.42  E-value=0.13  Score=40.15  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++++|||+|-.|.+.|..|. .|++|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            368999999999999999987 488999999874

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.39  E-value=0.17  Score=40.56  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=28.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ...+|+|||+|..|.++|+.|. +|.  +++++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            3579999999999999998886 565  899999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.38  E-value=0.14  Score=41.16  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+.|+|.|| |..|...+..|. +|++|+++++.+.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4578999998 999999998886 6999999998753

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.37  E-value=0.079  Score=42.93  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC-------CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS-------ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g-------~~v~vie~~~~   46 (274)
                      ++|.|||+|.-|.+.|..|. .|       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            58999999999999999987 47       89999998765

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=92.36  E-value=0.14  Score=41.60  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.|+|+|+|..|..+|..|. .|++|++.|+..
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~  206 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK  206 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999999999999997 599999999753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=92.36  E-value=0.14  Score=42.44  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ....|+|||+|..|..+|..|+ .|. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3578999999999999999987 588 899999864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.29  E-value=0.16  Score=37.83  Aligned_cols=31  Identities=29%  Similarity=0.417  Sum_probs=27.6

Q ss_pred             cEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+|+|| |..|...+..|. +|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            6999996 999999998886 699999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.25  E-value=0.18  Score=40.66  Aligned_cols=33  Identities=24%  Similarity=0.568  Sum_probs=27.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g--~~v~vie~~~   45 (274)
                      +.+|+|||+ |..|.++|+.+. +|  .+++++|...
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            468999997 999999998875 45  4899999854

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=92.20  E-value=0.15  Score=40.55  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ...+++|||+| ..|..+|..|. .|.+|++++++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence            35799999999 67999998886 599999999863

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.19  E-value=0.13  Score=44.58  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      .+++|+|+|..|...|..|. .|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            68999999999999999997 59999999998754

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=92.18  E-value=0.21  Score=42.43  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc----EEeecEEEEcccC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD----TINADCHFLCTGK  217 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~----~~~~d~vv~a~G~  217 (274)
                      .+.+.+.+.+..   +|+++++|++|+.+++.+.|.+.+|+    ++.||.||+|++.
T Consensus       242 ~l~~~l~~~l~~---~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~  296 (498)
T 2iid_A          242 KLPTAMYRDIQD---KVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS  296 (498)
T ss_dssp             HHHHHHHHHTGG---GEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccc---ccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCCh
Confidence            456666665543   79999999999988888888776664    5899999999985

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.17  E-value=0.16  Score=40.59  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      +..+|+|||+|..|.+.|+.|. .+.  ++.++|..+
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3469999999999999998886 344  799999753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=92.16  E-value=0.18  Score=42.72  Aligned_cols=56  Identities=14%  Similarity=0.032  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE-CCCCcEEeecEEEEcccCCCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL-TSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~-~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .+...+.+.+++.|++++.++.+ ++..+++.+ .+. ..++.++.+|.||+|||..+.
T Consensus       120 ~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          120 EIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence            46677777778889999999999 987665543 233 223335889999999997653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=92.15  E-value=0.12  Score=42.93  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.|+|||.|..|..+|..|+ .|.+|+++|+.+
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3579999999999999999997 599999999865

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.14  E-value=0.16  Score=43.27  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +..+|.|||.|.-|...|..|. .|++|+++++++.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3469999999999999999997 5999999998764

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=92.11  E-value=0.21  Score=40.99  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      |..+.++|+|+|+|..|...+..+++ |++|.+++..+.
T Consensus         7 m~~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            33455799999999999999998874 999999987653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.09  E-value=0.19  Score=40.28  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=28.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|.|| |..|...+..|. +|++|+++.+...
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            48999996 999999998886 6999999998753

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=92.06  E-value=0.11  Score=44.24  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             CCCCcEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCC
Q 023975           11 GKNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~-~A~~L~-~g~~v~vie~~~   45 (274)
                      ...++|.|||.|-+|++ +|..|+ +|++|++.|...
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            34579999999999997 688886 699999999764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=92.01  E-value=0.16  Score=40.40  Aligned_cols=34  Identities=15%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..++++|+|+|-+|-++|..|+ .|. +|+|+.|.+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            3578999999999999999997 588 899999873

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.01  E-value=0.19  Score=40.54  Aligned_cols=34  Identities=32%  Similarity=0.317  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||+|..|.+.|..|+ .|++|+++++.+.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            358999999999999999997 5999999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.99  E-value=0.19  Score=40.50  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|.|||.|.-|.+.|..|+ .|++|+++++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368999999999999999997 5999999998753

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=91.98  E-value=0.1  Score=45.87  Aligned_cols=38  Identities=26%  Similarity=0.280  Sum_probs=33.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~   49 (274)
                      ..+||+|||||++|+++|+.|+ +|++|+|+|+.+..++
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            3589999999999999999997 5999999999987764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.97  E-value=0.2  Score=39.23  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~---~v~vie~~~~   46 (274)
                      ++|.|||+|.-|.+.|..|. .|+   +|+++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            68999999999999998886 588   9999998764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.96  E-value=0.18  Score=39.50  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..+.++|+|+|-+|-++|..|. .|. +|+|+.|+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            3578999999999999999887 588 699999874

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.95  E-value=0.17  Score=39.81  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=28.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|.|| |..|...+..|. +|++|+++.|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46999998 999999998886 6999999988654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=91.91  E-value=0.11  Score=40.99  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=26.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|.+||-|.-|...|..|. .|++|+++++++.
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            358999999999999999997 5999999998764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=91.79  E-value=0.097  Score=41.17  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||+|..|...|..|. .|++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            58999999999999998886 599999998 54

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=91.78  E-value=0.23  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.591  Sum_probs=30.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +++|+|.|| |..|...+..|. +|++|+++.+...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999998 999999998886 6999999998764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.77  E-value=0.19  Score=42.63  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+|.|||.|.-|...|..|. .|++|+++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368999999999999999997 5999999999764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=91.73  E-value=0.26  Score=40.29  Aligned_cols=44  Identities=14%  Similarity=0.049  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+++.|++++.+++|++++..           +++.+|.||.|.|...
T Consensus       100 l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S  143 (381)
T 3c4a_A          100 LVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNH  143 (381)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCc
Confidence            4566777777889999999999988642           1257899999999654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=91.71  E-value=0.14  Score=42.60  Aligned_cols=34  Identities=32%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.++|||.|..|..+|..|+ .|.+|++.|+.+
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4579999999999999999997 599999999754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.63  E-value=0.21  Score=40.16  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|.|||.|..|...|..|+ .|++|+++++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            478999999999999999997 5999999998654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=91.63  E-value=0.18  Score=41.31  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..+++|+|||+.+...|..++. |++|+++|..+.+.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            4699999999999999988874 99999999887654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.62  E-value=0.17  Score=39.65  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..++++|+|+|-+|-++|+.|. .|. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3579999999999999999997 587 899999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.61  E-value=0.21  Score=38.84  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..++++|+|+|-+|-++|+.|. .|. +|+++.|+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3578999999999999999987 585 899999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=91.55  E-value=0.2  Score=37.33  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=27.7

Q ss_pred             cEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           15 RVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        15 ~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +|+|.|| |..|...+..|. +|++|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            5999998 999999998886 699999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=91.54  E-value=0.22  Score=38.98  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ..++++|+|+|-+|-++|..|. .|. +|+++.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            3578999999999999999987 585 899999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.47  E-value=0.19  Score=38.88  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~~   46 (274)
                      ++|.|||+|..|...|..|. .|++ |.++++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~   45 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEE   45 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence            58999999999999998887 4998 899998653

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=91.47  E-value=0.16  Score=40.85  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=27.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCC-------cEEEEcCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSA-------DVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~-------~v~vie~~   44 (274)
                      ..+|+|||| |..|.+.+..|. +++       ++.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            368999998 999999998886 464       79999976

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=91.46  E-value=0.21  Score=42.39  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|.-|...|..|. .|++|+++++++.
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            68999999999999999997 5999999998753

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=91.44  E-value=0.19  Score=41.11  Aligned_cols=32  Identities=28%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|+|||+|..|...|..|+ .|+++++++..+
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~   34 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTP   34 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999999887 499999998754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.40  E-value=0.25  Score=36.83  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh--cCCcEEEEcCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ--FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~--~g~~v~vie~~~   45 (274)
                      +.|+|.|| |..|..+|..|.  +|++|+++.|++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            46999995 999999998886  599999999864

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=91.34  E-value=0.25  Score=39.58  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=28.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~   45 (274)
                      ++.+|+|||+|..|.+.|+.|. .+.  ++.++|...
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            3479999999999999998886 343  799999753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.33  E-value=0.23  Score=38.95  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|+|+|-.|.++|..|. .| +|++++|+.
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            468999999988999999987 59 999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-07
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	2e-05
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	6e-05
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	6e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	1e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	0.003
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	3e-04
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	0.001
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	5e-04
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	6e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-04
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	0.001
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.001
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	0.003
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	0.004
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 14  KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINH 70
           ++VVV+GGG  G+  AK ++    S +VTLI+P   +   + S   +      +     +
Sbjct: 3   RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY 62

Query: 71  TDYLVNGRIVASP---AINITENEVLTAEGRRVVYDYLVIATGHK 112
                +G  V       I+  +  V TA G    YD  V+A G +
Sbjct: 63  DGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIE 107

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 9   SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI 68
           ++ + K VV+IG G+ G               +            L   VE   G  +  
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDE 60

Query: 69  NHTDYLVNGRIVASPAINITENEVLTAEGRRV 100
                     IVASP I +    +  A    +
Sbjct: 61  WLMAA---DLIVASPGIALAHPSLSAAADAGI 89

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 40.5 bits (93), Expect = 6e-05
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 11/135 (8%)

Query: 14  KRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
             VVV+G G+A       L Q      +    +  E  +       +      +     D
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 73  YLVNGRI-----VASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQ 127
                 +     V + + +   + V  ++GR + Y  LV+ATG        R    N   
Sbjct: 64  CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA-----APRAVLANDAL 118

Query: 128 AGPTGVELAGEIAVD 142
           A   G+     I VD
Sbjct: 119 ARAAGLACDDGIFVD 133

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 128 AGPTGVELAGEIAVDFPEKKVTLVHKGSR-------LLEFIGPKAGDKTRDWLISKKVDV 180
           AG   V    E+     +  +T+V   +        L +        +       +  +V
Sbjct: 11  AGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEV 70

Query: 181 KLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDS-LDTHGML 239
           +    V   S    + T   S G T+      L TG    +    D + + + L     +
Sbjct: 71  EWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGI 130

Query: 240 MVDENLRVKGQKNIFAIGDITDIRV 264
            VD   R     +++A+GD+T  R 
Sbjct: 131 FVDAYGR-TTCPDVYALGDVTRQRN 154

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITW 51
          +VV++G G  G  +AK L  + +VT+ID +     + 
Sbjct: 2  KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSK 38

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 8/141 (5%)

Query: 128 AGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----EFIGPKAGDKTRDWLISKKVDVKLG 183
            GP G ELA +++  +   +VT++ K               AG   R+ L    +D    
Sbjct: 8   NGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRK 64

Query: 184 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE 243
             + +    E                     T          D   +  + T   +++D+
Sbjct: 65  RGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDD 124

Query: 244 NLRVKGQKNIFAIGDITDIRV 264
           N R    K+++AIGD  +   
Sbjct: 125 NFRTS-AKDVYAIGDCAEYSG 144

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-----QFSADVTLIDPKEYFEITWA--SL 54
           + R  ++   + K + +IGGG  GS +A +L         +V  + P++          L
Sbjct: 26  DFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYL 85

Query: 55  RAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                    +  V           IV S  ++  +  +   +GR+V  D++V A G
Sbjct: 86  SNWTMEKVRREGVKVMP-----NAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 3/92 (3%)

Query: 128 AGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEFIGP-KAGDKTRDWLISKKVDVKLGE 184
            G  G ELA  +         +V  +      +  I P    + T + +  + V V    
Sbjct: 45  GGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA 104

Query: 185 RVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 216
            V    VS G        G  +  D      G
Sbjct: 105 IVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 12 KNKRVVVIGGG-VAGSLVAKSLQFSADVTLIDPK 44
          K+KR+++IGGG V  + + K +     +TL+ P 
Sbjct: 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKEYFEITW--ASLRAMV 58
           ++RR Q       R++++GGGV G  +A +       V+L++ +         A+L   V
Sbjct: 19  DARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV 78

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
                 + V    +  V G           +  VL  +G R+  D +V+  G
Sbjct: 79  ARYHAAQGVDLRFERSVTG---------SVDGVVLLDDGTRIAADMVVVGIG 121

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE 45
          ++   VVIGGG+ GS +A  L + + +  L +   
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 13 NKRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKE 45
           KRVVV+G GV G   A  L      V ++    
Sbjct: 6  QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 15 RVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWASLRA 56
          R+V+IG G+ G+ +A  L  +   ++T++D         ++  A
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHA 46

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID 42
          K+K+++++G G +G+++ + L +    V +ID
Sbjct: 1  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIID 32

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 15 RVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYF 47
          +V+V+G    G        +L   A++   +  ++ 
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 2   ESRRQQQSEGKNKRVVVIGGGVAGSLVA---KSLQFSADVTLIDPKEYFEITWASLRAMV 58
           ++   ++    + R+VVIGGG  G  VA           +     +    +T   + A  
Sbjct: 24  DAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 83

Query: 59  EPSFGKRSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
           E    +  V   T   V G  +++    +T   VL  +G R+  D ++   G
Sbjct: 84  EHLHREAGVDIRTGTQVCGFEMSTDQQKVT--AVLCEDGTRLPADLVIAGIG 133

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 14  KRVVVIGGGVAGSLVAKSLQFS-ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD 72
           KR + +GGG      A       A    +D     ++      + +     ++   N  +
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 73  YLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATG 110
              +               V+   G    YD +++A G
Sbjct: 79  VRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 10 EGKNKRVVVIGGGVAGSLVAKSL--QFSADVTLIDPKEYFEITWA 52
          E  + ++ ++G G A    A  L     +D+T+ + +EY      
Sbjct: 1  EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.82
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.8
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.75
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.74
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.74
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.74
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.74
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.71
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.7
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.7
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.7
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.7
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.69
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.68
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.64
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.64
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.64
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.63
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.63
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.63
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.6
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.59
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.56
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.56
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.55
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.55
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.54
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.53
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.52
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.48
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.45
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.44
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.44
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.43
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.41
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.41
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.39
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.38
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.36
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.36
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.32
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.29
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.29
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.29
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.27
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.24
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.24
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.22
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.21
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.21
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.2
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.19
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.17
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.13
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.11
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.08
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.07
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.07
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.98
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.9
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.87
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.86
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.86
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.83
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.78
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.77
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.77
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.74
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.69
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.66
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.66
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.61
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.61
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.58
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.56
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.55
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.54
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.54
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.53
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.53
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.52
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.52
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.51
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.41
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.35
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.32
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.25
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.14
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.14
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.07
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.04
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.99
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.99
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.95
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.88
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.88
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.49
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.46
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.45
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.38
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.33
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.29
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.2
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.2
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.03
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.02
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.01
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.88
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.87
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.85
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.8
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	96.79
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.7
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.66
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.61
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.59
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.57
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.57
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.52
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.5
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.38
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.25
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.19
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.13
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.11
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.78
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.78
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.76
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.6
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.59
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.54
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.49
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.48
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.45
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.35
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.34
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.27
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.19
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.14
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.12
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.1
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.08
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.01
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.97
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.89
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.66
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.54
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.49
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.42
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.4
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.27
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.26
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.24
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.24
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.23
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.2
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.08
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.95
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.86
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.69
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.64
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.5
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.47
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.29
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.24
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.22
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.14
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.1
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.06
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.94
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.78
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.69
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.64
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.41
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.26
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.24
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.19
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.86
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.81
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.47
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.23
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.85
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.69
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.52
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.49
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.42
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.27
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.9
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.84
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.34
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.34
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	89.17
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.14
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.87
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.7
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.56
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.48
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	88.46
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	88.43
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.36
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.7
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.66
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.17
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	87.16
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.8
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.28
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.15
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.02
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.82
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.78
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.68
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.67
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.61
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.59
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.56
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.46
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.46
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.41
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.24
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.14
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.91
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	84.34
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.16
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.85
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.53
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	83.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.73
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	82.28
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.18
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	82.07
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.05
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.87
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	81.7
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.32
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.11
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.09
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	80.98
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.96
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.28
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	80.25
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.07

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.82  E-value=5.4e-22  Score=150.97  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCcee--EECCCCcEEeecEEEEcccC-----CCCchhhcccccccccCCCCcE
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDT--YLTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGML  239 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~--v~~~~g~~~~~d~vv~a~G~-----~~~~~~~~~~~~~~~~~~~g~~  239 (274)
                      ..+...++..+++++....... .  .....  ....+...+.+|.||+|||.     .|+.+.+....+++.++++|++
T Consensus        97 ~~~~~~~~~~~v~~i~~~~~~~-~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~gv~~~~~G~i  173 (221)
T d1dxla1          97 RGIEGLFKKNKVTYVKGYGKFV-S--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRI  173 (221)
T ss_dssp             HHHHHHHHHHTCEEEESCEEEE-E--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTTCCBCSSSCB
T ss_pred             hHHHHhhhcCCeEEEEeccccc-c--ccccccccccccccccccceEEEeECCCccCccccCCCCChHhcCceEcCCCcE
Confidence            3444556677888876543211 1  11111  22334458899999999994     5666655445556688999999


Q ss_pred             EeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          240 MVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       240 ~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      .||++++| +.|+|||+|||++.|.+...
T Consensus       174 ~vd~~~~T-~v~gi~A~GDv~~g~~l~~~  201 (221)
T d1dxla1         174 LVNERFST-NVSGVYAIGDVIPGPMLAHK  201 (221)
T ss_dssp             CCCTTCBC-SSTTEEECSTTSSSCCCHHH
T ss_pred             EeCCCccc-CCCCEEEEeccCCCcccHHH
Confidence            99999999 89999999999988776543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.80  E-value=2.8e-21  Score=147.11  Aligned_cols=98  Identities=23%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCceeE-ECCCCcEEeecEEEEcc--------cCCCCchhhcccccccccCCCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTGDTINADCHFLCT--------GKPVGSDWLKDTILKDSLDTHG  237 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g~~~~~d~vv~a~--------G~~~~~~~~~~~~~~~~~~~~g  237 (274)
                      ..+...++..+++++.+..  .+.. .....+ ...+..++.++.+|+++        |..|+.+.+..+.+++.++++|
T Consensus        95 ~~~~~~~~~~~V~~i~G~a--~f~~-~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~gv~~~~~G  171 (223)
T d1ebda1          95 GGVEGLLKGNKVEIVKGEA--YFVD-ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRG  171 (223)
T ss_dssp             HHHHHHHHTTTCEEEESEE--EEEE-TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTTTCCBCTTS
T ss_pred             hhHHHhhhccceeeeccEE--EEcc-CcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhcCceECCCC
Confidence            3444556678888876642  1221 222233 33444578999999986        6677777654444555788999


Q ss_pred             cEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          238 MLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       238 ~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      +|.||+++|| +.|+|||+|||++.+.+.+.
T Consensus       172 ~I~vd~~~~T-~~~gvyA~GDv~~~~~~~~~  201 (223)
T d1ebda1         172 LIEVDQQCRT-SVPNIFAIGDIVPGPALAHK  201 (223)
T ss_dssp             CBCCCTTCBC-SSTTEEECGGGSSSCCCHHH
T ss_pred             CEeECCCCCC-CCCCEEEEeccCCCcccHHH
Confidence            9999999999 89999999999988866543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.75  E-value=1.4e-20  Score=146.61  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=56.3

Q ss_pred             CCcEEeecEEEEcccCCCCchhhcccc--------cccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975          202 TGDTINADCHFLCTGKPVGSDWLKDTI--------LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  269 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~~~~~~--------~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~  269 (274)
                      +|++++||.|++|+|..|+.+.+....        +++.++++|+|.||+++|| +.|+|||+|||++.|.+.+.+
T Consensus       168 ~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~T-s~~~IyA~GDv~~~~~l~~~A  242 (261)
T d1mo9a1         168 AGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGDLIGGPMEMFKA  242 (261)
T ss_dssp             TTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSBC-SSTTEEECGGGGCSSCSHHHH
T ss_pred             ccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCccc-CCCCEEEEEEeCCCcccHHHH
Confidence            577899999999999999877665432        3457889999999999999 899999999999888775544

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=2.7e-19  Score=136.40  Aligned_cols=94  Identities=18%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC--cEEeecEEEEcccCCCCch---------hhcccccccccCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSD---------WLKDTILKDSLDT  235 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~---------~~~~~~~~~~~~~  235 (274)
                      ..+...++..||+++.+......   .........++  ..+.++.+++++|..|...         ++..  .++.+++
T Consensus       103 ~~~~~~~~~~gV~vi~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~--~gv~l~~  177 (229)
T d3lada1         103 GGVASLIKANGVTLFEGHGKLLA---GKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAAD--SGVTLDE  177 (229)
T ss_dssp             HHHHHHHHHHTCEEEESEEEECS---TTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSC--CSCCBCT
T ss_pred             hhHHHHhhcCCeEEEEeEEcccc---cceeeccccCccceeeecccccccCCcccccccccccccccchHh--cCeeecC
Confidence            34455667789999876544322   22333333333  4688999999999766432         2222  3447889


Q ss_pred             CCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          236 HGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       236 ~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|++.||++++| +.|+|||+|||++.|.+.
T Consensus       178 ~G~i~vd~~~~T-~vpgiyA~GDv~~g~~l~  207 (229)
T d3lada1         178 RGFIYVDDYCAT-SVPGVYAIGDVVRGAMLA  207 (229)
T ss_dssp             TSCBCCCTTSBC-SSTTEEECGGGSSSCCCH
T ss_pred             CCcEEecccccC-CCCCEEEEeCCcchHHHH
Confidence            999999999999 899999999998877654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.4e-19  Score=135.23  Aligned_cols=39  Identities=28%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             cccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          229 LKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       229 ~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      .++.++++|+|.||++++| +.|+|||+|||++.+.+.+.
T Consensus       161 ~gv~~~~~G~I~vd~~~~T-~~~gvyA~GDv~~~~~l~~~  199 (221)
T d3grsa1         161 LGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGKALLTPV  199 (221)
T ss_dssp             TTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGTSSCCHHH
T ss_pred             cCcEECCCccEEeCCCccc-cCCcEEEEEEccCCcCcHHH
Confidence            3447889999999999999 89999999999987766543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=5.6e-19  Score=135.00  Aligned_cols=101  Identities=24%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccC---CCceeEECCCCc--EEeecEEEEcccCCCCchhh---------cccccccc
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVS---EGSDTYLTSTGD--TINADCHFLCTGKPVGSDWL---------KDTILKDS  232 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~---~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~---------~~~~~~~~  232 (274)
                      ..+.+.++..|++++.+.....-...   ...+.+...+|+  ++++|.+++|+|..|.....         ..+..++.
T Consensus        98 ~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~  177 (233)
T d1xdia1          98 ADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQ  177 (233)
T ss_dssp             HHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCC
T ss_pred             cceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhc
Confidence            34556678889999876532211111   123456667774  78999999999987753211         11123346


Q ss_pred             cCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023975          233 LDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM  268 (274)
Q Consensus       233 ~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~  268 (274)
                      ++++|+|.||++++| +.|+|||+|||++.+.+.+.
T Consensus       178 ~~~~G~I~vd~~~~T-~~~gIyA~GDv~~~~~l~~~  212 (233)
T d1xdia1         178 LGRGNYLTVDRVSRT-LATGIYAAGDCTGLLPLASV  212 (233)
T ss_dssp             CBTTTBCCCCSSSBC-SSTTEEECSGGGTSCSCHHH
T ss_pred             ccCCCcCCcCCCccc-CCCCEEEEEEeCCCchhHHH
Confidence            778899999999999 89999999999988766543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.8e-19  Score=138.08  Aligned_cols=98  Identities=17%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCc--EEeecEEEEcccCCCCchhh--------cccccccccCC-C
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWL--------KDTILKDSLDT-H  236 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~--------~~~~~~~~~~~-~  236 (274)
                      .+...+++++|.++.+...-   ...+...+...+++  .+.++.+++++|..|....+        .....++.++. .
T Consensus       106 g~~~~l~~~~V~vi~G~~~~---~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~  182 (235)
T d1h6va1         106 GYRVALREKKVVYENAYGKF---IGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIRDSCTRTIGLETVGVKINEKT  182 (235)
T ss_dssp             HHHHHHHHHTCEEECCEEEE---EETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSSEEESCTTSCCTTTTCCCCSSS
T ss_pred             hhhhhhhccCceEEEeEEee---ccccceecccccccccccccccceeecCCCceeEEEeeccceeeccccceeeecccc
Confidence            34556677899988765432   22344556666654  68899999999987753221        11222334554 5


Q ss_pred             CcEEeCCCccccCCCCeEEeccccC-CCCCCCCC
Q 023975          237 GMLMVDENLRVKGQKNIFAIGDITD-IRVSASMI  269 (274)
Q Consensus       237 g~~~v~~~~~~~~~~~i~~~Gd~~~-~~~~~~~~  269 (274)
                      |+|.||+++|| |.|+|||+|||+. .+.+.+.+
T Consensus       183 g~I~vd~~~~T-svpgIyA~GDv~~g~~~l~~~A  215 (235)
T d1h6va1         183 GKIPVTDEEQT-NVPYIYAIGDILEGKLELTPVA  215 (235)
T ss_dssp             CCBCCCTTSBC-SSTTEEECGGGBTTSCCCHHHH
T ss_pred             CccccCCcccc-CCCCEEEEEeccCCCcccHHHH
Confidence            89999999999 8999999999985 44454433

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.71  E-value=5.3e-19  Score=134.91  Aligned_cols=64  Identities=19%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             EEeecEEEEcccC-CCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975          205 TINADCHFLCTGK-PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  269 (274)
Q Consensus       205 ~~~~d~vv~a~G~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~  269 (274)
                      ...++.++++.|. .|.........+++.++++|+|.||++++| |.|+|||+|||++.|.+.+.+
T Consensus       146 ~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~T-svpgVyAaGDv~~~~~l~~~A  210 (229)
T d1ojta1         146 IVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRT-NVPHIYAIGDIVGQPMLAHKA  210 (229)
T ss_dssp             EEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBC-SSTTEEECGGGTCSSCCHHHH
T ss_pred             ceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccC-CCCCEEEEEecCCCcchHHHH
Confidence            4566677777664 454443333444557899999999999999 899999999999888765443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=5.7e-18  Score=129.40  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=48.5

Q ss_pred             EEeecEEEE--------cccCCCCchhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          205 TINADCHFL--------CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       205 ~~~~d~vv~--------a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      .++++.+++        ++|..|+.+.+....+++.+++.|++.||.+++| +.|+|||+|||+..|.+.+
T Consensus       143 ~~~~~~i~i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T-~~~~v~A~GD~~~g~~l~~  212 (233)
T d1v59a1         143 ILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS-KFPHIKVVGDVTFGPMLAH  212 (233)
T ss_dssp             EEEEEEEEECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBC-SSTTEEECGGGSSSCCCHH
T ss_pred             eccCCeEEEecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEec-CCCCEEEEcCCcccHHHHH
Confidence            455666655        7777787776555555567889999999999999 8999999999998776553

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7e-18  Score=126.84  Aligned_cols=90  Identities=20%  Similarity=0.188  Sum_probs=70.6

Q ss_pred             HHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC-chhhcccccccccCCCCcEEeCCCccccCC
Q 023975          172 WLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG-SDWLKDTILKDSLDTHGMLMVDENLRVKGQ  250 (274)
Q Consensus       172 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  250 (274)
                      .+++.||+++++++|++|..+++  .|.+++|+++.||.+|+|+|..|+ .++....++.+ .+..|.+.||+++++ + 
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~-~~~~~~i~vd~~l~~-~-  166 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEI-DSDFGGFRVNAELQA-R-  166 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCB-CTTTCSEECCTTCEE-E-
T ss_pred             HHHHCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeeeecchhhhhhccchhh-hhhhhhhhhhHhcCc-C-
Confidence            45678999999999999965443  678899999999999999996544 45555556532 234578999999998 5 


Q ss_pred             CCeEEeccccCCCCCC
Q 023975          251 KNIFAIGDITDIRVSA  266 (274)
Q Consensus       251 ~~i~~~Gd~~~~~~~~  266 (274)
                      ++|||+|||+..+...
T Consensus       167 ~~VyA~GD~a~~~~~~  182 (213)
T d1m6ia1         167 SNIWVAGDAACFYDIK  182 (213)
T ss_dssp             TTEEECGGGEEEEETT
T ss_pred             CceEEeeeeeeecccc
Confidence            9999999999776543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=1.3e-17  Score=128.93  Aligned_cols=101  Identities=10%  Similarity=0.068  Sum_probs=67.4

Q ss_pred             ChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce---eEECCCCcEEeecEEEEcccCCCCc---------hhhccccc
Q 023975          162 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD---TYLTSTGDTINADCHFLCTGKPVGS---------DWLKDTIL  229 (274)
Q Consensus       162 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~~~~~d~vv~a~G~~~~~---------~~~~~~~~  229 (274)
                      ...+.+.+.+.+++.|++++++++|++++...+..   .+...+++++.||.||+|||-...+         .+.+..++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            34577888888999999999999999987655432   2345677789999999999954322         23333333


Q ss_pred             cccc---CCCCcEE---eC-CCccccCCCCeEEeccccCC
Q 023975          230 KDSL---DTHGMLM---VD-ENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       230 ~~~~---~~~g~~~---v~-~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      .+.-   ...|++.   +| ..|++...|++|++|.+...
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv  227 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDV  227 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSC
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEe
Confidence            2100   0012332   34 34777779999999987754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=6.2e-17  Score=119.78  Aligned_cols=94  Identities=21%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC-----CCCchhhcccccccccCCCCcE
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK-----PVGSDWLKDTILKDSLDTHGML  239 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~-----~~~~~~~~~~~~~~~~~~~g~~  239 (274)
                      +...+.+.+++.|+++... .|..+...++...+.+.. ....+|.+++++|.     .|+..++.. ++  .++++|.+
T Consensus        69 l~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~v--eld~~G~i  143 (192)
T d1vdca1          69 LTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDS-KAILADAVILAIGAVAKGHEPATKFLDG-GV--ELDSDGYV  143 (192)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSS-EEEEEEEEEECCCEEECCEEESCGGGTT-SS--CBCTTSCB
T ss_pred             HHHHHHHHHHhhcceeeee-eEEecccccCcEEecccc-eeeeeeeEEEEeeeeecccCchHHHhcC-ce--eecCCCeE
Confidence            4455666677889998765 577777666666676554 47899999999985     355555543 33  67899999


Q ss_pred             EeCC-CccccCCCCeEEeccccCCCC
Q 023975          240 MVDE-NLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       240 ~v~~-~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .+|+ .++| +.|+||++|||.+.+.
T Consensus       144 ~~~~~~~~T-s~~GV~a~GDv~~~~~  168 (192)
T d1vdca1         144 VTKPGTTQT-SVPGVFAAGDVQDKKY  168 (192)
T ss_dssp             CCCTTSCBC-SSTTEEECGGGGCSSC
T ss_pred             EeCCCceEe-cCCCEEEeeecCCccc
Confidence            9986 6788 8999999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.69  E-value=5.2e-17  Score=117.54  Aligned_cols=87  Identities=23%  Similarity=0.441  Sum_probs=67.0

Q ss_pred             HHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCCCccccCC
Q 023975          171 DWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQ  250 (274)
Q Consensus       171 ~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  250 (274)
                      +.+++.+++++.++.++.+....   .+.+.+++++++|.+|+|+|..| .+++...++.    .++.+.+|.+++| +.
T Consensus        60 ~~~~~~~v~~~~~~~v~~i~~~~---~~~~~~~~~i~~D~li~a~G~~~-~~~~~~~gl~----~~~~i~v~~~~~t-~~  130 (167)
T d1xhca1          60 DWYRKRGIEIRLAEEAKLIDRGR---KVVITEKGEVPYDTLVLATGAPN-VDLARRSGIH----TGRGILIDDNFRT-SA  130 (167)
T ss_dssp             HHHHHHTEEEECSCCEEEEETTT---TEEEESSCEEECSEEEECCCEEC-CHHHHHTTCC----BSSSEECCTTSBC-SS
T ss_pred             HHHHhccceeeeecccccccccc---ccccccccccccceeEEEEEecC-CchhhhcCce----eCCceeeccccEe-cC
Confidence            34556799999999998885332   24556667899999999999876 5666666652    2446999999999 89


Q ss_pred             CCeEEeccccCCCCCC
Q 023975          251 KNIFAIGDITDIRVSA  266 (274)
Q Consensus       251 ~~i~~~Gd~~~~~~~~  266 (274)
                      |+||++|||+..+...
T Consensus       131 ~~i~aiGD~~~~~~~~  146 (167)
T d1xhca1         131 KDVYAIGDCAEYSGII  146 (167)
T ss_dssp             TTEEECGGGEEBTTBC
T ss_pred             CCeEEeeecccCCCeE
Confidence            9999999999876553

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.68  E-value=9.5e-17  Score=123.89  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEECCCCcEEeecEEEEcccCCCCc---------hhhcccccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPVGS---------DWLKDTILKDS  232 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~~~---------~~~~~~~~~~~  232 (274)
                      ..+.+.+.+.+++.|++++++++|+++..+++.+ .+.+++|+.+.||.||+|+|....+         ++....+..+.
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~  189 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTIT  189 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeeee
Confidence            3567788888999999999999999998777654 5788999999999999999964322         22333332111


Q ss_pred             cCCCCcEEe----CCCccccCCCCeEEeccccCCCC
Q 023975          233 LDTHGMLMV----DENLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       233 ~~~~g~~~v----~~~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      -...+.+.+    ...+.....|++|++|++.....
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~  225 (251)
T d2i0za1         190 ELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHG  225 (251)
T ss_dssp             EEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBC
T ss_pred             eeeecccCccccCchhHHHhcCCCcEeeeeEEEccC
Confidence            000011111    12233336899999999875443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.64  E-value=4.9e-16  Score=115.45  Aligned_cols=135  Identities=23%  Similarity=0.312  Sum_probs=101.6

Q ss_pred             HccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCCh--------------hHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          125 QYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGP--------------KAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      .+++|++|+|+|..+.+..++.+++++++.+.+. ....              .+.....+.+++.|++++++++|++++
T Consensus         5 IIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~i~   83 (198)
T d1nhpa1           5 VLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQ   83 (198)
T ss_dssp             EECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEEEE
T ss_pred             EECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceeeEe
Confidence            4677899999999998777788999999876531 1111              112223466888999999999999998


Q ss_pred             cCCCceeEE-CCCCc--EEeecEEEEcccCCCC--------chhhcccccccccCCCCcEEeCCCccccCCCCeEEeccc
Q 023975          191 VSEGSDTYL-TSTGD--TINADCHFLCTGKPVG--------SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI  259 (274)
Q Consensus       191 ~~~~~~~v~-~~~g~--~~~~d~vv~a~G~~~~--------~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~  259 (274)
                      .+++.+.+. ..+|+  ++.+|.+|+|+|..|+        ..++.. +  ..++++|++.||+.++| +.|+|||+|||
T Consensus        84 ~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~--~~~~~~G~i~vd~~~~T-~~~~IyA~GD~  159 (198)
T d1nhpa1          84 PKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-T--LELHPNGLIKTDEYMRT-SEPDVFAVGDA  159 (198)
T ss_dssp             TTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-T--SCBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred             eccccceeeecccccccccccceeeEeecceeecccccccccccccc-c--ceeccCCceecCCcccc-cccceEEecce
Confidence            877776665 45554  5789999999997653        333332 2  24678999999999999 89999999999


Q ss_pred             cCCCC
Q 023975          260 TDIRV  264 (274)
Q Consensus       260 ~~~~~  264 (274)
                      +..+.
T Consensus       160 a~~~~  164 (198)
T d1nhpa1         160 TLIKY  164 (198)
T ss_dssp             SCEEE
T ss_pred             eeccc
Confidence            97654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=7.1e-17  Score=122.14  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      +.+|++||||||+|++||..+++ |.+|+|+|++..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~   39 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL   39 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            45899999999999999999985 999999998753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.63  E-value=1.5e-15  Score=118.75  Aligned_cols=65  Identities=11%  Similarity=-0.105  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL  229 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~  229 (274)
                      ..+...+.+.+++.|++++.+++|++|+.+++.+.|.+++| ++.||.||+|+|... ..+++..++
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s-~~l~~~~G~  215 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS-GMFFKQLGL  215 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT-HHHHHHTTC
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccH-HHHHhhcCC
Confidence            35777888889999999999999999998888888988887 699999999999875 566666665

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=9.7e-16  Score=113.08  Aligned_cols=93  Identities=14%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC-----chhhcccccccccCCCCcE
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG-----SDWLKDTILKDSLDTHGML  239 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~-----~~~~~~~~~~~~~~~~g~~  239 (274)
                      +.+.+.+.+.+.++++... .|+.+...++...+...+ ..+.++.+++++|..+.     ..++... +  .+ ++|.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~-~--e~-~~g~i  137 (190)
T d1trba1          64 LMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQ-L--EL-ENGYI  137 (190)
T ss_dssp             HHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTT-S--CE-ETTEE
T ss_pred             HHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEee-eeEeeeeeeeecceeeeeecccceeecce-E--ec-CCcEE
Confidence            4455566677788888765 577777776666666554 47999999999997553     2223221 1  12 46888


Q ss_pred             EeCC-----CccccCCCCeEEeccccCCCC
Q 023975          240 MVDE-----NLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       240 ~v~~-----~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      .+++     .++| +.|+||++|||++.+.
T Consensus       138 ~~~~~~~~~~~~T-~v~gV~aaGDv~~~~~  166 (190)
T d1trba1         138 KVQSGIHGNATQT-SIPGVFAAGDVMDHIY  166 (190)
T ss_dssp             CCCCSSSSCTTBC-SSTTEEECGGGGCSSS
T ss_pred             EEecCCccccccc-ccCeEEEeEEecCcce
Confidence            8885     3577 8999999999987553

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.63  E-value=1.8e-15  Score=118.65  Aligned_cols=66  Identities=21%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILK  230 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~  230 (274)
                      ..+...+.+.+++.|++++++++|++++.+++.+.|.+++| ++.||.||+|+|... ..++...++.
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s-~~l~~~lg~~  215 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN-SKLLSKLNLD  215 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH-HHHGGGGTEE
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcc-hhhHHhcCCc
Confidence            35778888999999999999999999999999999999888 599999999999765 5666666653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.60  E-value=4.5e-17  Score=124.92  Aligned_cols=65  Identities=25%  Similarity=0.306  Sum_probs=50.6

Q ss_pred             cEEeecEEEEcccCCCCchh--------hcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975          204 DTINADCHFLCTGKPVGSDW--------LKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  269 (274)
Q Consensus       204 ~~~~~d~vv~a~G~~~~~~~--------~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~  269 (274)
                      +.+.+|.|++++|..|...-        +..+..++.++++|+|.||++++| +.|+|||+|||++.+.+.+.+
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T-s~~~iyA~GDv~~~~~~~~~A  220 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVMLTPVA  220 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBC-SSTTEEECGGGGCSCCCHHHH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCc-CCCCEEEEEECCCCccchhhH
Confidence            47899999999998775321        112233457889999999999999 899999999999888765443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.7e-15  Score=117.47  Aligned_cols=57  Identities=7%  Similarity=-0.186  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCC--CceeEECCCCcEEeecEEEEcccCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.+.+.+++.|++|+++++|++|+.++  +.+..++.+|+++.||.||....+.|
T Consensus       236 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhcc
Confidence            3578889999999999999999999996543  34555567889999999998765555

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.1e-15  Score=113.71  Aligned_cols=93  Identities=24%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhcc------cccccccCCCCcEE
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD------TILKDSLDTHGMLM  240 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~------~~~~~~~~~~g~~~  240 (274)
                      ..+...+++.||++..........      .....+++.+.++.+++|||..|..+..+.      ...++.+++++++.
T Consensus        95 ~~~~~~l~~~gV~v~~~~~~~~~~------~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~  168 (217)
T d1gesa1          95 TSYENVLGKNNVDVIKGFARFVDA------KTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIV  168 (217)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEET------TEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBC
T ss_pred             HHHHHHHhCCeEEEEeeeccccee------eeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEe
Confidence            344556778899887665433221      122345678999999999997765433321      11234678899999


Q ss_pred             eCCCccccCCCCeEEeccccCCCCCC
Q 023975          241 VDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       241 v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      +|..+++ +.++||++||+......+
T Consensus       169 ~d~~~~t-~~~~i~~iG~g~~g~ela  193 (217)
T d1gesa1         169 VDKYQNT-NIEGIYAVGDNTGAVELT  193 (217)
T ss_dssp             CCTTSBC-SSTTEEECSGGGTSCCCH
T ss_pred             eCchhcc-CCCcEEEECCCccHHHHH
Confidence            9999998 799999999998765443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.9e-14  Score=105.37  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCC---ceeEECCCCcEEeecEEEEcccCCCCchhhcccccccccCCCCcEEeCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEG---SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE  243 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~---~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~~~v~~  243 (274)
                      ..+...+++.+++......+..+.....   .......+.+++.++.++.++|..+..........  .....|.+.+|.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~g~i~v~~  137 (184)
T d1fl2a1          60 GALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAV--ERNRMGEIIIDA  137 (184)
T ss_dssp             HHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTS--CBCTTSCBCCCT
T ss_pred             HHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccc--cccccceeccCC
Confidence            3444445566677766666655543322   23344566678999999999997554444433333  456778999999


Q ss_pred             CccccCCCCeEEeccccCCCC
Q 023975          244 NLRVKGQKNIFAIGDITDIRV  264 (274)
Q Consensus       244 ~~~~~~~~~i~~~Gd~~~~~~  264 (274)
                      ..++ +.|+||++|||.+.+.
T Consensus       138 ~~~t-~~~gv~a~gd~~~~~~  157 (184)
T d1fl2a1         138 KCET-NVKGVFAAGDCTTVPY  157 (184)
T ss_dssp             TCBC-SSTTEEECSTTBSCSS
T ss_pred             ceee-eCCCEEEEeeecCccc
Confidence            9998 8999999999998764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.56  E-value=9.6e-15  Score=106.97  Aligned_cols=139  Identities=20%  Similarity=0.195  Sum_probs=94.0

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHH----------HHHHhCCcEEEcCceeeeeccCC
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR----------DWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                      ..+++|.+|+|+|..|.+......++++.+... .+...+.+...+.          +.....+++++.+..++++..+.
T Consensus         7 vIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~   85 (183)
T d1d7ya1           7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAE-RPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQA   85 (183)
T ss_dssp             EEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS-CCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEETTT
T ss_pred             EEECccHHHHHHHHHHHhcCCceEEEEEecccc-cchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccccc
Confidence            346779999999999985444445555544332 1122222222222          12335689999999999886443


Q ss_pred             CceeEECCCCcEEeecEEEEcccCCCCchhhccccc-ccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          194 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL-KDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       194 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                        ..+.+++|+++++|.+|+|+|..|+..++..... ...+..+++|.||++++| +.|+|||+|||+..+...
T Consensus        86 --~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~t-s~~~IyA~GD~a~~~~~~  156 (183)
T d1d7ya1          86 --HTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGRT-TCPDVYALGDVTRQRNPL  156 (183)
T ss_dssp             --TEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCBC-SSTTEEECGGGEEEECTT
T ss_pred             --ceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccceec-cccccchhhhhhccceee
Confidence              4567889999999999999999887554432111 011334577999999998 899999999999877654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-15  Score=123.54  Aligned_cols=50  Identities=12%  Similarity=-0.088  Sum_probs=43.5

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccC
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      ...+.+++.|++++++++|++|..+++.+.|++.+|+++.||.||+|++.
T Consensus       212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         212 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            33444567799999999999999999999999999999999999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.55  E-value=1.1e-14  Score=117.37  Aligned_cols=41  Identities=29%  Similarity=0.364  Sum_probs=36.4

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ....++|+|||||++||+||+.|+ +|++|+|||+++.+|+.
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~   68 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR   68 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTT
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCe
Confidence            344579999999999999999998 49999999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.54  E-value=1.1e-15  Score=121.57  Aligned_cols=97  Identities=12%  Similarity=0.020  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC-C--cEEeecEEEEcccCCCCchhhccccccc-----ccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVGSDWLKDTILKD-----SLDTH  236 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~-----~~~~~  236 (274)
                      +...+.+..++.|++|+++++|++|+.+++++.+++.+ +  +++.||.||+|+|......++.......     .....
T Consensus       221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~  300 (347)
T d2ivda1         221 LQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL  300 (347)
T ss_dssp             THHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred             hHHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence            33444444555689999999999999888877665543 3  4789999999998643334443321110     01112


Q ss_pred             CcEE---eCCCccccCCCCeEEeccccCC
Q 023975          237 GMLM---VDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       237 g~~~---v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                      |...   ......+ +.|++|++||..+.
T Consensus       301 ~~~~~~~~~~~~~~-~~p~~~~~G~~~~g  328 (347)
T d2ivda1         301 GHLERVAAIDAALQ-RLPGLHLIGNAYKG  328 (347)
T ss_dssp             THHHHHHHHHHHHH-TSTTEEECSTTTSC
T ss_pred             Ccccceeccccccc-CCCCEEEecccccC
Confidence            2110   1111223 69999999998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.53  E-value=5.3e-17  Score=123.89  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=85.8

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeecccccccc-EEEEEeeEEEe
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNG-RIVASPAINIT   88 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   88 (274)
                      ...++|+||||||+||++|..|+ +|++|+|+|+++.+|+.|.......................... ...........
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  126 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEECS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeeecc
Confidence            34689999999999999999997 59999999999999876654322111000000000000000000 00000011111


Q ss_pred             cCeEEeCCCeEEecCEEEEccCCCCCCChhHHHHH----------------------HHccCCchhhhHHHHhhhhCCCC
Q 023975           89 ENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL----------------------NQYQAGPTGVELAGEIAVDFPEK  146 (274)
Q Consensus        89 ~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~----------------------~~~~~g~~~~e~a~~l~~~~~~~  146 (274)
                      .+.+..++..++.||++|+|||+.+..|.......                      ..+++|.+|+|+|..+.  ..+.
T Consensus       127 ~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~  204 (233)
T d1djqa3         127 QKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIE--EANP  204 (233)
T ss_dssp             CCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTT--SSCT
T ss_pred             cccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHH--hcCC
Confidence            12222223346789999999999866554322211                      11222888999999998  6688


Q ss_pred             eEEEEeCCCccC
Q 023975          147 KVTLVHKGSRLL  158 (274)
Q Consensus       147 ~v~~~~~~~~~~  158 (274)
                      +++++.+.+.+.
T Consensus       205 ~Vtli~r~~~~~  216 (233)
T d1djqa3         205 QIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCCCCCCCC
T ss_pred             ceEEEEeccccc
Confidence            889888887654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.52  E-value=1.9e-13  Score=109.00  Aligned_cols=38  Identities=32%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      .+||+|||+|++||++|+.|+ +|++|+|+||.+..++.
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~   61 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN   61 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTT
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            479999999999999999997 59999999999887654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.48  E-value=5.1e-15  Score=113.01  Aligned_cols=34  Identities=35%  Similarity=0.515  Sum_probs=29.6

Q ss_pred             CCCcEEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023975          235 THGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI  269 (274)
Q Consensus       235 ~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~  269 (274)
                      ++|+|.||+++|| +.|+|||+|||.+.+.+.+.+
T Consensus       186 ~~G~I~vde~~~T-~~~~iyAvGDv~~~~~l~~~A  219 (238)
T d1aoga1         186 KNGGVQVDEYSRT-NVSNIYAIGDVTNRVMLTPVA  219 (238)
T ss_dssp             ETTEECCCTTCBC-SSTTEEECGGGGTSCCCHHHH
T ss_pred             cCCeEEecCCeee-ccCCEEEEEEecCCccchhhH
Confidence            4899999999999 899999999999888765433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.7e-13  Score=92.06  Aligned_cols=92  Identities=20%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC-ceeEECC
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTS  201 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~  201 (274)
                      +..+++|++|+|+|..+.  ..+.+++++.+.+++++.+++.+.+.+.+.++++||++++++.+++++.+++ .+.+.++
T Consensus        24 vvIiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~  101 (116)
T d1gesa2          24 VAVVGAGYIGVELGGVIN--GLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELE  101 (116)
T ss_dssp             EEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEET
T ss_pred             EEEECCChhhHHHHHHhh--ccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEEC
Confidence            344667999999999998  5789999999999999999999999999999999999999999999987654 5678899


Q ss_pred             CCcEEeecEEEEccc
Q 023975          202 TGDTINADCHFLCTG  216 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G  216 (274)
                      +|+++++|.||+|+|
T Consensus       102 ~g~~~~~D~vi~a~G  116 (116)
T d1gesa2         102 DGRSETVDCLIWAIG  116 (116)
T ss_dssp             TSCEEEESEEEECSC
T ss_pred             CCCEEEcCEEEEecC
Confidence            999999999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.47  E-value=1.1e-14  Score=116.13  Aligned_cols=38  Identities=34%  Similarity=0.444  Sum_probs=34.9

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      ++|+|||||++||+||++|++ |++|+|+|+++.+|+..
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~   40 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL   40 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCce
Confidence            689999999999999999985 99999999999998653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.45  E-value=9.3e-14  Score=109.10  Aligned_cols=172  Identities=16%  Similarity=0.107  Sum_probs=102.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEEeeEEEecC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITEN   90 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (274)
                      ...||+|||||++||++|++|+ .|.+|+||||++.+|+.|.....                  .+..            
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~y------------------pg~~------------   55 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY------------------PGAR------------   55 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC------------------TTCB------------
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCC------------------CCce------------
Confidence            4589999999999999999997 59999999999999988743110                  0000            


Q ss_pred             eEEeCCCeEEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHH
Q 023975           91 EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTR  170 (274)
Q Consensus        91 ~v~~~~~~~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  170 (274)
                         +..            .-.....+.. ....                .. ..-         ....+ ....+.+.+.
T Consensus        56 ---~d~------------~~~~~~~s~~-~~~~----------------~~-~~~---------~~~~p-~~~e~~~Yl~   92 (298)
T d1w4xa1          56 ---CDI------------ESIEYCYSFS-EEVL----------------QE-WNW---------TERYA-SQPEILRYIN   92 (298)
T ss_dssp             ---CSS------------CTTTSSCCSC-HHHH----------------HH-CCC---------CBSSC-BHHHHHHHHH
T ss_pred             ---ecc------------cccccccccc-cccc----------------CC-CCC---------ccccC-ccchHHHHHH
Confidence               000            0000000000 0000                00 000         00011 1134666777


Q ss_pred             HHHHhCCc--EEEcCceeeeecc--CCCceeEECCCCcEEeecEEEEcccCC--CCchhhccc------cccc--ccCCC
Q 023975          171 DWLISKKV--DVKLGERVNLDSV--SEGSDTYLTSTGDTINADCHFLCTGKP--VGSDWLKDT------ILKD--SLDTH  236 (274)
Q Consensus       171 ~~~~~~gv--~i~~~~~v~~i~~--~~~~~~v~~~~g~~~~~d~vv~a~G~~--~~~~~~~~~------~~~~--~~~~~  236 (274)
                      +.+++.++  .|+++++|++++.  +.+...|.+.+++++.+|.||+|+|+.  |..+.+...      +..+  .. .+
T Consensus        93 ~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l~~~W-~~  171 (298)
T d1w4xa1          93 FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVALKEKW-AA  171 (298)
T ss_dssp             HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBHHHHT-TT
T ss_pred             HHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeeehhhc-hh
Confidence            88888888  5999999999974  345678999999999999999999963  332222211      1100  11 11


Q ss_pred             CcEEeCCCccccCCCCeEEecc
Q 023975          237 GMLMVDENLRVKGQKNIFAIGD  258 (274)
Q Consensus       237 g~~~v~~~~~~~~~~~i~~~Gd  258 (274)
                       .+..-.-+.+++.||+|.++-
T Consensus       172 -~p~ty~G~~v~gfPN~f~~~G  192 (298)
T d1w4xa1         172 -GPRTYLGLSTAGFPNLFFIAG  192 (298)
T ss_dssp             -SCCCBTTTBCTTSTTEEESSC
T ss_pred             -hHHHHHHHhcCCCCeEEEecC
Confidence             223333344567899998743

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=1.4e-14  Score=112.08  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             HHHHHHHHhCCcEEEcCce-e---eeeccCC--Cc--eeEECCCCcEEeecEEEEcccCCCC-----chhhccccccccc
Q 023975          167 DKTRDWLISKKVDVKLGER-V---NLDSVSE--GS--DTYLTSTGDTINADCHFLCTGKPVG-----SDWLKDTILKDSL  233 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~-v---~~i~~~~--~~--~~v~~~~g~~~~~d~vv~a~G~~~~-----~~~~~~~~~~~~~  233 (274)
                      +.+...+++.||+++.+.. +   ..++...  +.  ......+++.+.+|.|++|||..|.     .+.+......+ +
T Consensus        92 ~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~~~l~~~~i-~  170 (259)
T d1onfa1          92 NIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNV-E  170 (259)
T ss_dssp             HHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTTSSCTTTTC-C
T ss_pred             cchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccccccccccee-e
Confidence            3445566777888776532 1   0111110  00  0111223457999999999999883     33332222222 4


Q ss_pred             CCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          234 DTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       234 ~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      ++++.+.+|...++ ...++|++||++.......
T Consensus       171 ts~~~~~~d~~~~t-~Vig~gaiGdv~~~~~~~~  203 (259)
T d1onfa1         171 TNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKE  203 (259)
T ss_dssp             BSSSCEEECTTCBC-SSSSEEECSTTEEEC----
T ss_pred             ecccccccccCCce-eEeeEEEEEEeeehhhhhh
Confidence            56788999988888 7999999999987655443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.44  E-value=4.1e-13  Score=90.52  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=84.3

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT  200 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~  200 (274)
                      +++..+++|+.|+|+|..++  ..|.+++++.+.+++++.+++++.+.+.+.+++.|+++++++++++++.+++.+.+++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~--~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~  100 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWA--RLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKF  100 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEE
T ss_pred             CeEEEECCChHHHHHHHHHH--HcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEE
Confidence            44566778999999999998  6799999999999999999999999999999999999999999999998888877776


Q ss_pred             CCC---cEEeecEEEEccc
Q 023975          201 STG---DTINADCHFLCTG  216 (274)
Q Consensus       201 ~~g---~~~~~d~vv~a~G  216 (274)
                      .++   +++.||.|++|+|
T Consensus       101 ~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2         101 VDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ESSSEEEEEEESEEEECSC
T ss_pred             EECCCCEEEECCEEEEeeC
Confidence            554   5899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.44  E-value=9.3e-13  Score=88.63  Aligned_cols=96  Identities=18%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             HHHHccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-CceeEE
Q 023975          122 RLNQYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYL  199 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~  199 (274)
                      ++..+++|++|+|+|..+... ..+.+++++.+.+.+++.+++.+.+.+.+.++++||++++++.+++++..+ +...+.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~   99 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV   99 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEE
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEE
Confidence            455677799999999876643 347899999999999999999999999999999999999999999998654 455789


Q ss_pred             CCCCcEEeecEEEEcccC
Q 023975          200 TSTGDTINADCHFLCTGK  217 (274)
Q Consensus       200 ~~~g~~~~~d~vv~a~G~  217 (274)
                      +++|++++||.|++|+|.
T Consensus       100 ~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2         100 FESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             ETTSCEEEESEEEECSCE
T ss_pred             ECCCCEEEcCEEEEecCC
Confidence            999999999999999983

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.3e-14  Score=103.25  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeE
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAI   85 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (274)
                      +....++|+|||||||||+||+.|+ +|++|+|||+.+.+|+.+.............+....+.+..  .++++...+  
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~--  116 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNH--  116 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESC--
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCC--
Confidence            3445689999999999999999997 59999999999999864432111111110001111111111  133332221  


Q ss_pred             EEecCeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           86 NITENEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        86 ~~~~~~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                           .+.. + ....||.+|+|+|..+..+.
T Consensus       117 -----~Vt~-~-~~~~~d~vilAtG~~~~~~~  141 (179)
T d1ps9a3         117 -----TVTA-D-QLQAFDETILASGIPNRALA  141 (179)
T ss_dssp             -----CCCS-S-SSCCSSEEEECCCEECCTTH
T ss_pred             -----EEcc-c-ccccceeEEEeecCCCcccc
Confidence                 1211 2 24678999999999877665

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.41  E-value=2.3e-13  Score=107.64  Aligned_cols=69  Identities=20%  Similarity=0.000  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EECCCCcEEeecEEEEcccCCCCchhhccccccccc
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSL  233 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~  233 (274)
                      ..+...+.+.+++.|++++.+++|++++.+++.+. |.+++| +++||.||+|+|... .++++..+..++.
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s-~~l~~~~g~~lP~  217 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWG-AKIGAMIGMAVPP  217 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGH-HHHHHTTTCCCCT
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhH-HHHHHHcCCcccc
Confidence            45778888999999999999999999998888754 677666 699999999999875 5666666665444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.41  E-value=4.8e-13  Score=106.33  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=35.2

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceee
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEIT   50 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~   50 (274)
                      ...+||+|||+|++||+||++|++ |.+|+|+||.+..++.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~   57 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN   57 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            346899999999999999999984 9999999999877644

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.40  E-value=2.3e-13  Score=109.08  Aligned_cols=55  Identities=16%  Similarity=0.022  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC---c---EEeecEEEEcccCC
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---D---TINADCHFLCTGKP  218 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~---~~~~d~vv~a~G~~  218 (274)
                      .+.+.+...++..+..+..+++|++++.+++.+.|++.++   +   ...+|.||+|+|..
T Consensus       114 ~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         114 TIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            3556666666777888999999999998888777765432   2   46799999999963

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.40  E-value=4.3e-13  Score=107.48  Aligned_cols=98  Identities=15%  Similarity=0.039  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee-EE---CCCCc--EEeecEEEEcccCCCC-------chhhccccc-
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL---TSTGD--TINADCHFLCTGKPVG-------SDWLKDTIL-  229 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~d~vv~a~G~~~~-------~~~~~~~~~-  229 (274)
                      .+...+.+.+++.|++++.++++.++..+++.+. +.   ..+|+  .+.|+.||+|||-...       .......++ 
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~  238 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA  238 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred             HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence            4666777888889999999999998887766442 22   35665  5889999999983221       111111111 


Q ss_pred             -----c-cccCCCCcEEeCCCccccCCCCeEEeccccCC
Q 023975          230 -----K-DSLDTHGMLMVDENLRVKGQKNIFAIGDITDI  262 (274)
Q Consensus       230 -----~-~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~  262 (274)
                           + ..+.+-+++.+++..++ +.+++|++|+++..
T Consensus       239 ~~~~~G~~~l~~~~~iq~~~~~~t-~~~gl~a~G~~~~~  276 (336)
T d2bs2a2         239 IALETGIAQLGNMGGIRTDYRGEA-KLKGLFSAGEAACW  276 (336)
T ss_dssp             HHHTTSSSCEECCCEEECCTTSBC-SSBTEEECGGGEEC
T ss_pred             hhhhhhhhhhccccceeechhhcc-cCCcceeccccccc
Confidence                 1 12334567899999998 79999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.39  E-value=2.5e-12  Score=86.19  Aligned_cols=92  Identities=14%  Similarity=0.108  Sum_probs=81.4

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC-CceeEEC
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDTYLT  200 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~v~~  200 (274)
                      ++..+++|.+|+|+|..+.  ..+.+++++.+.+++++.+++.+.+.+.+.++++||++++++.+++++..+ +.+.+.+
T Consensus        24 ~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~  101 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHL  101 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEE
T ss_pred             EEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEE
Confidence            3455677999999999998  789999999999999999999999999999999999999999999998554 4577899


Q ss_pred             CCCcEEe-ecEEEEcc
Q 023975          201 STGDTIN-ADCHFLCT  215 (274)
Q Consensus       201 ~~g~~~~-~d~vv~a~  215 (274)
                      ++|+.++ +|.|++|.
T Consensus       102 ~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2         102 SDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TTSCEEEEESEEEECC
T ss_pred             CCCCEEEeCCEEEEeC
Confidence            9998774 79999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-12  Score=90.53  Aligned_cols=92  Identities=17%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             ccCCchhhhHHHHhhhh--CCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC
Q 023975          126 YQAGPTGVELAGEIAVD--FPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  202 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~--~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  202 (274)
                      +++|++|+|+|..+...  ..+.+++++.+.+.+++ .+++.+.+.+.+.++++||++++++.|++++.+++...+.+++
T Consensus        43 vGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~  122 (137)
T d1m6ia2          43 IGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKD  122 (137)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETT
T ss_pred             ECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECC
Confidence            55699999999988632  35789999999999887 5788899999999999999999999999999888888999999


Q ss_pred             CcEEeecEEEEcccC
Q 023975          203 GDTINADCHFLCTGK  217 (274)
Q Consensus       203 g~~~~~d~vv~a~G~  217 (274)
                      |++++||.||+|+|.
T Consensus       123 G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         123 GRKVETDHIVAAVGL  137 (137)
T ss_dssp             SCEEEESEEEECCCE
T ss_pred             CCEEECCEEEEeecC
Confidence            999999999999983

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.36  E-value=5.4e-12  Score=84.70  Aligned_cols=94  Identities=18%  Similarity=0.230  Sum_probs=81.0

Q ss_pred             HHHHccCCchhhhHHHHhhhh-CCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccC-CCceeEE
Q 023975          122 RLNQYQAGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYL  199 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~  199 (274)
                      ++..+++|+.|+|+|..+... ..+.+++++.+.+.+++.+++.+.+.+.+.++++||++++++.+++++.. ++...+.
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~  101 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVT  101 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEE
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEE
Confidence            455567799999999877643 23568999999999999999999999999999999999999999999855 4467899


Q ss_pred             CCCCcEEeecEEEEcc
Q 023975          200 TSTGDTINADCHFLCT  215 (274)
Q Consensus       200 ~~~g~~~~~d~vv~a~  215 (274)
                      +++|++++||.|++|.
T Consensus       102 ~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2         102 FESGKKMDFDLVMMAI  117 (117)
T ss_dssp             ETTSCEEEESEEEECS
T ss_pred             ECCCcEEEeCEEEEeC
Confidence            9999999999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.36  E-value=2.5e-14  Score=111.98  Aligned_cols=91  Identities=18%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             HhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCCchhhccc--cccc----ccCCCCcEEeC----C
Q 023975          174 ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT--ILKD----SLDTHGMLMVD----E  243 (274)
Q Consensus       174 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~--~~~~----~~~~~g~~~v~----~  243 (274)
                      +..+..+..++.+..+...++.+.+.+.+|+.+.+|.++++.........+...  .++.    .++..+...++    .
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~  300 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYD  300 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHH
T ss_pred             hhcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchh
Confidence            345778999999999998888899999999999999999997632111100000  0000    00111111122    2


Q ss_pred             CccccCCCCeEEeccccCCCCC
Q 023975          244 NLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       244 ~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                      .+++ +.++||++||++....+
T Consensus       301 ~~~~-~~~~v~~~GD~~~~~~~  321 (347)
T d1b5qa1         301 QLRA-PVGRVYFTGEHTSEHYN  321 (347)
T ss_dssp             HHHC-CBTTEEECSGGGCSSCT
T ss_pred             hccc-ccCCEEEEEccccCcCC
Confidence            2445 68999999999875443

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.33  E-value=5.8e-12  Score=84.87  Aligned_cols=88  Identities=24%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  201 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  201 (274)
                      +..+++|..|+|+|..+.  ..+.+++++.+.+++++ .+++.+.+.+.+.++++||++++++.|+++...    .+.++
T Consensus        33 vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~----~v~l~  106 (121)
T d1d7ya2          33 LLIVGGGVIGLELAATAR--TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG----VVLLD  106 (121)
T ss_dssp             EEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT----EEEET
T ss_pred             EEEECcchhHHHHHHHhh--cccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC----EEEEC
Confidence            334566999999999998  56999999999999987 678899999999999999999999999987632    47789


Q ss_pred             CCcEEeecEEEEccc
Q 023975          202 TGDTINADCHFLCTG  216 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G  216 (274)
                      ||++++||.||+|+|
T Consensus       107 dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         107 DGTRIAADMVVVGIG  121 (121)
T ss_dssp             TSCEEECSEEEECSC
T ss_pred             CCCEEECCEEEEeeC
Confidence            999999999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=2e-12  Score=86.64  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT  200 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~  200 (274)
                      +++..+++|+.|+|+|..+.  ..+.+++++.+.+++++.+++.+.+.+.+.++++||+++++++|++++  ++......
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~--~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~   97 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYR--KLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLAND   97 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHh--hcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEE
Confidence            34566778999999999998  568999999999999999999999999999999999999999999986  33333333


Q ss_pred             C--CCcEEeecEEEEccc
Q 023975          201 S--TGDTINADCHFLCTG  216 (274)
Q Consensus       201 ~--~g~~~~~d~vv~a~G  216 (274)
                      .  ++++++||.|++|+|
T Consensus        98 ~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          98 GKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             SSSCCCEECCSCEEECCC
T ss_pred             cCCCeEEEEcCEEEEecC
Confidence            3  335899999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.29  E-value=3e-12  Score=86.73  Aligned_cols=94  Identities=10%  Similarity=0.043  Sum_probs=81.9

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC-
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-  200 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-  200 (274)
                      ++..+++|+.|+|+|..+.  ..|.+++++.+.+.+++.+++.+.+.+.+.++++|+++++++.+++++.++++..+.+ 
T Consensus        28 ~vvIiGgG~IG~E~A~~~~--~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~  105 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFE  105 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHhh--cCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEE
Confidence            4555677999999999998  5699999999999999999999999999999999999999999999998877666554 


Q ss_pred             -CCC--cEEeecEEEEcccC
Q 023975          201 -STG--DTINADCHFLCTGK  217 (274)
Q Consensus       201 -~~g--~~~~~d~vv~a~G~  217 (274)
                       .+|  ++++||.|++|+|.
T Consensus       106 ~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         106 GANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             SSSCCSSCEEESCEEECCCE
T ss_pred             eCCCCeEEEEcCEEEEecCC
Confidence             333  47999999999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=6.6e-12  Score=91.58  Aligned_cols=137  Identities=18%  Similarity=0.202  Sum_probs=91.4

Q ss_pred             HHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcC-------------ChhHHHHHHHHHHhCCcEEEcCceeeee
Q 023975          123 LNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-------------GPKAGDKTRDWLISKKVDVKLGERVNLD  189 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~gv~i~~~~~v~~i  189 (274)
                      +-.+++|.+|+|+|..+.+......+..+.+.+......             ...............+..+..+..+..+
T Consensus         6 VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (185)
T d1q1ra1           6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAI   85 (185)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccceeeee
Confidence            345677999999999998432333444444433211110             0111112234456677888888877777


Q ss_pred             ccCCCceeEECCCCcEEeecEEEEcccCCCC---chhhcccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCC
Q 023975          190 SVSEGSDTYLTSTGDTINADCHFLCTGKPVG---SDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA  266 (274)
Q Consensus       190 ~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~---~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~  266 (274)
                      ..+  ...+...++.++++|.+++++|..|+   ..++...++    ..+|++.||++++| +.|+||++|||+..+...
T Consensus        86 ~~~--~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~----~~~~~i~Vd~~~~t-s~~~vya~GD~~~~~~~~  158 (185)
T d1q1ra1          86 NRD--RQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGL----QVDNGIVINEHMQT-SDPLIMAVGDCARFHSQL  158 (185)
T ss_dssp             ETT--TTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTC----CBSSSEECCTTSBC-SSTTEEECGGGEEEEETT
T ss_pred             ccc--ccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCc----cccCccccCCcccc-chhhhhcchhhhcccccc
Confidence            543  44677788889999999999997664   344444333    35788999999999 899999999999877654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.29  E-value=1.2e-11  Score=97.78  Aligned_cols=40  Identities=33%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ...+||+|||||++|+++|+.|+ +|++|+||||.+..++.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~   54 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN   54 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            34589999999999999999998 59999999999887644

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.28  E-value=1.2e-11  Score=84.83  Aligned_cols=91  Identities=23%  Similarity=0.261  Sum_probs=78.5

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC--c-eeEE
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--S-DTYL  199 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~-~~v~  199 (274)
                      ..+++|+.|+|+|..+.  ..+.+++++.+.+++++ .+++.+.+.+.+.++++||++++++.++.++...+  . ..+.
T Consensus        39 ~VIGgG~iG~E~A~~l~--~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~  116 (133)
T d1q1ra2          39 VVIGGGYIGLEVAATAI--KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL  116 (133)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCchHHHHHHHHHH--hhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEE
Confidence            34566999999999998  56999999999999887 46778889999999999999999999999976543  2 3477


Q ss_pred             CCCCcEEeecEEEEccc
Q 023975          200 TSTGDTINADCHFLCTG  216 (274)
Q Consensus       200 ~~~g~~~~~d~vv~a~G  216 (274)
                      +++|++++||.||+|+|
T Consensus       117 ~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         117 CEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ETTSCEEECSEEEECCC
T ss_pred             CCCCCEEECCEEEEeeC
Confidence            99999999999999997

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1.1e-11  Score=83.68  Aligned_cols=91  Identities=18%  Similarity=0.267  Sum_probs=78.1

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee--EE
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT--YL  199 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~--v~  199 (274)
                      ++..+++|+.|+|+|..+.  ..|.+++++.+.+++++.+++.+.+.+.+.++++||++++++++++++..+++..  ++
T Consensus        25 ~~vIiG~G~ig~E~A~~l~--~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~  102 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYS--RLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIV  102 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEE
T ss_pred             eEEEECCCchHHHHHHHHH--hhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEE
Confidence            4566777999999999998  6799999999999999999999999999999999999999999999987666543  34


Q ss_pred             CCCC-----cEEeecEEEEc
Q 023975          200 TSTG-----DTINADCHFLC  214 (274)
Q Consensus       200 ~~~g-----~~~~~d~vv~a  214 (274)
                      +.++     ++++||.|++|
T Consensus       103 ~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         103 VEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEETTTTEEEEEEESEEEEC
T ss_pred             EEeCCCCCeEEEEeCEEEEC
Confidence            3332     47999999986

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.27  E-value=1.3e-11  Score=82.93  Aligned_cols=91  Identities=23%  Similarity=0.204  Sum_probs=79.4

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECC
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS  201 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~  201 (274)
                      ++..+++|++|+|+|..+.  ..|.+++++.+.+++++.+++.+.+.+.+.++++||++++++.+++++.+++...+.+.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~  101 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE  101 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEE
T ss_pred             eEEEECCCccceeeeeeec--ccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEE
Confidence            4556777999999999998  67999999999999999999999999999999999999999999999988777766653


Q ss_pred             -CC--cEEeecEEEEc
Q 023975          202 -TG--DTINADCHFLC  214 (274)
Q Consensus       202 -~g--~~~~~d~vv~a  214 (274)
                       +|  ++++||.|+++
T Consensus       102 ~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2         102 ANGETKTIDADYVLVT  117 (117)
T ss_dssp             ETTEEEEEEESEEEEC
T ss_pred             eCCCEEEEEeEEEEEC
Confidence             34  47999999874

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=82.76  Aligned_cols=93  Identities=19%  Similarity=0.181  Sum_probs=79.0

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEE--
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL--  199 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~--  199 (274)
                      ++..+++|++|+|+|..+.  ..+.+|+++.+.+++++.+++.+.+.+.+.+++.||+++.++++++++..+++..+.  
T Consensus        24 ~vvIvGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~  101 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMV  101 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEcCCccHHHHHHHHh--cCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEE
Confidence            3455677999999999998  679999999999999999999999999999999999999999999998776665433  


Q ss_pred             -CCCCc------EEeecEEEEccc
Q 023975          200 -TSTGD------TINADCHFLCTG  216 (274)
Q Consensus       200 -~~~g~------~~~~d~vv~a~G  216 (274)
                       ...|+      .++||.|++|+|
T Consensus       102 ~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         102 TAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             ECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EccCCcCcCccccccCCEEEEEeC
Confidence             23332      578999999987

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.24  E-value=2.5e-11  Score=82.08  Aligned_cols=94  Identities=13%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee---
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---  197 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---  197 (274)
                      +++..+++|++|+|+|..+.  ..+.+++++.+.+.+++.+++.+.+.+.+.+++.|+++++++.+++++.+++...   
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~--~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~  100 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAV  100 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--hcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEE
Confidence            34555677999999999998  6789999999999999999999999999999999999999999999987765332   


Q ss_pred             --EECCCCcEEeecEEEEccc
Q 023975          198 --YLTSTGDTINADCHFLCTG  216 (274)
Q Consensus       198 --v~~~~g~~~~~d~vv~a~G  216 (274)
                        ....++++++||.||+|+|
T Consensus       101 ~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2         101 VAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEETTEEEEEECSCEEECCC
T ss_pred             EEEeCCCCEEEEcCEEEEEEC
Confidence              2244567899999999997

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.1e-11  Score=97.86  Aligned_cols=91  Identities=20%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             HHHHHHhCCcEEEcCceeeeeccCCC--------ceeEE---CCCCc--EEeecEEEEcccCCCC-------chhhcccc
Q 023975          169 TRDWLISKKVDVKLGERVNLDSVSEG--------SDTYL---TSTGD--TINADCHFLCTGKPVG-------SDWLKDTI  228 (274)
Q Consensus       169 ~~~~~~~~gv~i~~~~~v~~i~~~~~--------~~~v~---~~~g~--~~~~d~vv~a~G~~~~-------~~~~~~~~  228 (274)
                      +.+.++..++++..++.+.++..+++        ...+.   ..+++  .+.++.||+|||-...       .+.....+
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            45666778999999999998876543        12232   23443  5789999999994221       11111111


Q ss_pred             ------cccccCCCCcEEeCCCccccCCCCeEEecccc
Q 023975          229 ------LKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       229 ------~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                            .+..+..-+++.++++.++ +.|++|++|+++
T Consensus       224 ~~mA~~aGa~l~~m~~iq~~~~g~t-~~~g~~a~G~~~  260 (305)
T d1chua2         224 IAMAWRAGCRVANCGGVMVDDHGRT-DVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHHHTTCCEECSCEEECCTTCBC-SSBTEEECGGGE
T ss_pred             EeeccccceeeEecceeEECCcccC-CCCCceecccEE
Confidence                  1224456678999999998 799999999974

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.22  E-value=4e-11  Score=81.05  Aligned_cols=93  Identities=20%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEEC
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT  200 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~  200 (274)
                      +++..+++|+.|+|+|..+.  ..|.+|+++.+.+.+++..++.+.+.+.+.+++.||++++++.+.+++..++++.+.+
T Consensus        26 ~~~viiG~G~iglE~A~~~~--~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~  103 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTV  103 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEE
T ss_pred             CeEEEEccchHHHHHHHHHH--hcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEE
Confidence            34556777999999999998  6799999999999999999999999999999999999999999999998777765543


Q ss_pred             --C-CC--cEEeecEEEEcc
Q 023975          201 --S-TG--DTINADCHFLCT  215 (274)
Q Consensus       201 --~-~g--~~~~~d~vv~a~  215 (274)
                        . +|  ++++||.|++|.
T Consensus       104 ~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         104 EPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EESSSCCCEEEEESEEECCC
T ss_pred             EECCCCeEEEEEcCEEEEcC
Confidence              2 33  368999999874

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=3.9e-11  Score=94.79  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             HHHHHHhCCcEEEcCceeeeeccCCCcee-E---ECCCCc--EEeecEEEEcccCC-----C--Cchhhccccc------
Q 023975          169 TRDWLISKKVDVKLGERVNLDSVSEGSDT-Y---LTSTGD--TINADCHFLCTGKP-----V--GSDWLKDTIL------  229 (274)
Q Consensus       169 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v---~~~~g~--~~~~d~vv~a~G~~-----~--~~~~~~~~~~------  229 (274)
                      +.+..+..+|+++.++.+.++..+++.+. +   ...+|+  .+.|+.||+|||-.     .  |++.....++      
T Consensus       141 l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         141 FQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            34444556899999999999987776542 2   245675  56899999999931     1  1122111111      


Q ss_pred             ccccCCCCcEEeCCCccccCCCCeEEeccccC
Q 023975          230 KDSLDTHGMLMVDENLRVKGQKNIFAIGDITD  261 (274)
Q Consensus       230 ~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~  261 (274)
                      +..+.+=.++.+++...+ ..+++|+.+++.+
T Consensus       221 Ga~l~dme~iq~~p~~~~-~~~~~~~~~~~~~  251 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCET-RIKGLFAVGECSS  251 (311)
T ss_dssp             TCCEESCCEEECCTTSBC-SSBTEEECGGGEE
T ss_pred             ccceeecccccccccchh-cccCCCcCcceee
Confidence            112223356777777776 6899999999764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.21  E-value=1.3e-11  Score=89.86  Aligned_cols=104  Identities=28%  Similarity=0.318  Sum_probs=64.4

Q ss_pred             CcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCccccceeeeccc-cccccEEEEEeeEEEec
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTD-YLVNGRIVASPAINITE   89 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   89 (274)
                      ++|+|||||++|+.+|..|++   ..+|+|+|+.+.+...+..................... ....+.+........+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   82 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGIDP   82 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEECCT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEeeee
Confidence            699999999999999999973   46899999998765332221111111111111111111 11234444444444432


Q ss_pred             --CeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           90 --NEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        90 --~~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                        +.+.+.+++.++||++++|+|..+..+.
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~  112 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDK  112 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred             ccceeecccceeeccceEEEEeccccchhh
Confidence              3677888999999999999998866543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=5.9e-11  Score=80.16  Aligned_cols=89  Identities=19%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC-cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCC
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST  202 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  202 (274)
                      ..+++|+.|+|+|..+.  ..+.+++++.+.+++++ .+++.+.+.+.+.++++|+++++++.+++++.++ .....+.+
T Consensus        34 vViGgG~iG~E~A~~l~--~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~d  110 (123)
T d1nhpa2          34 VVIGSGYIGIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKVVTD  110 (123)
T ss_dssp             EEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEEEES
T ss_pred             EEECChHHHHHHHHHhh--ccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEEEeC
Confidence            33556899999999998  56999999999999887 5789999999999999999999999999998654 44444678


Q ss_pred             CcEEeecEEEEcc
Q 023975          203 GDTINADCHFLCT  215 (274)
Q Consensus       203 g~~~~~d~vv~a~  215 (274)
                      |++++||.||+|.
T Consensus       111 g~~i~~D~vi~aI  123 (123)
T d1nhpa2         111 KNAYDADLVVVAV  123 (123)
T ss_dssp             SCEEECSEEEECS
T ss_pred             CCEEECCEEEEEC
Confidence            8899999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.19  E-value=4e-11  Score=80.97  Aligned_cols=86  Identities=21%  Similarity=0.273  Sum_probs=74.2

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG  203 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g  203 (274)
                      ..+++|++|+|+|..+.  ..+.+++++.+.+.+++ +++.+.+.+.+.++++|+++++++++.+++.++    + +.++
T Consensus        36 vIiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~----v-~~~~  107 (122)
T d1xhca2          36 IIIGGGFIGLELAGNLA--EAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEANEEG----V-LTNS  107 (122)
T ss_dssp             EEEECSHHHHHHHHHHH--HTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEECSSE----E-EETT
T ss_pred             EEECCcHHHHHHHHHhh--cccceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE----E-EeCC
Confidence            34667999999999998  57999999999998775 789999999999999999999999999986442    2 4567


Q ss_pred             cEEeecEEEEcccC
Q 023975          204 DTINADCHFLCTGK  217 (274)
Q Consensus       204 ~~~~~d~vv~a~G~  217 (274)
                      +.+++|.||+|+|.
T Consensus       108 ~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         108 GFIEGKVKICAIGI  121 (122)
T ss_dssp             EEEECSCEEEECCE
T ss_pred             CEEECCEEEEEEEe
Confidence            78999999999994

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2.4e-11  Score=90.23  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC-ceeecccee------eecCCccccc--e-------eeecccccc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY-FEITWASLR------AMVEPSFGKR--S-------VINHTDYLV   75 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~-~g~~~~~~~------~~~~~~~~~~--~-------~~~~~~~~~   75 (274)
                      .|||+||||||||++||.++++ |.+++||+++-. .|..+....      ..+.......  .       .........
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~   81 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR   81 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence            4999999999999999999985 999999998632 221111000      0000000000  0       000111223


Q ss_pred             ccEEEEEeeEEEe--cC---eEEeCCCeEEecCEEEEccCCC
Q 023975           76 NGRIVASPAINIT--EN---EVLTAEGRRVVYDYLVIATGHK  112 (274)
Q Consensus        76 ~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~~li~a~G~~  112 (274)
                      ++.++...+.++.  ..   .|.+.+|.++.++.+|++||..
T Consensus        82 nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence            5677777666652  22   5778899999999999999996

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.13  E-value=2.5e-10  Score=87.76  Aligned_cols=46  Identities=11%  Similarity=-0.099  Sum_probs=40.8

Q ss_pred             hCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEEcccCCCC
Q 023975          175 SKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ..++.+..++.++++..+++.+.+.++||+++.+|.+|.|.|....
T Consensus       108 ~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             HCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccc
Confidence            3568889999999999888899999999999999999999997653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.9e-10  Score=90.47  Aligned_cols=38  Identities=24%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcee
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI   49 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~   49 (274)
                      +++||+|||+|+|||+||++++ +|.+|+|+||.+..++
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg   44 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS   44 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            4689999999999999999997 5999999999887764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=2.9e-10  Score=76.51  Aligned_cols=92  Identities=14%  Similarity=0.013  Sum_probs=74.5

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCC----cee
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG----SDT  197 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~----~~~  197 (274)
                      ++..+++|++|+|+|..+.  ..|.+|+++.++ .+++.+++.+.+.+.+.+++.||++++++.+++++...+    ...
T Consensus        22 ~vvIIGgG~iG~E~A~~l~--~lG~~Vtii~~~-~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~   98 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLA--GIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLK   98 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHH--HTTCCEEEEESS-SSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEE
T ss_pred             eEEEECCCccHHHHHHHHh--hcCCeEEEEEec-hhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEE
Confidence            4566777999999999998  679999999875 678999999999999999999999999999998864322    234


Q ss_pred             EECCC--C---cEEeecEEEEccc
Q 023975          198 YLTST--G---DTINADCHFLCTG  216 (274)
Q Consensus       198 v~~~~--g---~~~~~d~vv~a~G  216 (274)
                      +...+  +   ..+++|.|++|+|
T Consensus        99 v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          99 VTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEECCCCcEEEEECCEEEEEeC
Confidence            43322  2   2568999999997

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.7e-11  Score=81.01  Aligned_cols=88  Identities=17%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEeeE-EE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAI-NI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~   87 (274)
                      ..++++|||||+.|+.+|..|+ .|.+|+|+|+.+.+...   +.    +..    .....+.+  .++++.....+ .+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~---~d----~~~----~~~~~~~l~~~GV~~~~~~~v~~i   88 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS---FD----PMI----SETLVEVMNAEGPQLHTNAIPKAV   88 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT---SC----HHH----HHHHHHHHHHHSCEEECSCCEEEE
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh---cc----hhh----HHHHHHHHHHCCCEEEeCCEEEEE
Confidence            3478999999999999999997 59999999998876411   10    000    00000111  13444322211 22


Q ss_pred             e--cC---eEEeCCCeEEecCEEEEccC
Q 023975           88 T--EN---EVLTAEGRRVVYDYLVIATG  110 (274)
Q Consensus        88 ~--~~---~v~~~~~~~~~~~~li~a~G  110 (274)
                      .  ..   .+.+++|+++.+|.+++|+|
T Consensus        89 ~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          89 VKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            1  11   57788999999999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.07  E-value=7.7e-10  Score=80.08  Aligned_cols=137  Identities=18%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHH----------HHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAG----------DKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                      -.+++|..|+++|..|.+..+..+++++++.+.+.........          ..........++.+..+..+ .+  +.
T Consensus         6 vIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~   82 (186)
T d1fcda1           6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSAT-GI--DP   82 (186)
T ss_dssp             EEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEE-EC--CT
T ss_pred             EEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeE-ee--ee
Confidence            3467789999999999876677899999988765432211111          01123345567777665433 22  23


Q ss_pred             CceeEECCCCcEEeecEEEEcccCCCCchhhccccccc-----ccCCCCcEEeCCC-ccccCCCCeEEeccccCCC
Q 023975          194 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKD-----SLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIR  263 (274)
Q Consensus       194 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~-----~~~~~g~~~v~~~-~~~~~~~~i~~~Gd~~~~~  263 (274)
                      ....+.+.+++++.+|.+|+|+|..|+..++.......     .....++..++.+ ++..+.+++|++||++...
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~~~  158 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIAN  158 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEECT
T ss_pred             ccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccccC
Confidence            34457778889999999999999988877665543211     1234566666654 5555899999999998543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.07  E-value=1.6e-10  Score=77.57  Aligned_cols=88  Identities=19%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEe-eEEEe
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASP-AINIT   88 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~   88 (274)
                      .++++|||||+.|+.+|..|+ +|.+|+++|+.+.+...          .+.........+.+  .+++++... +..+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~----------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~   99 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR----------AAPATLADFVARYHAAQGVDLRFERSVTGSV   99 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT----------TSCHHHHHHHHHHHHTTTCEEEESCCEEEEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc----------cCCHHHHHHHHHHHHHCCcEEEeCCEEEEEe
Confidence            479999999999999999997 69999999998875311          00000000001111  245554333 33455


Q ss_pred             cCeEEeCCCeEEecCEEEEccC
Q 023975           89 ENEVLTAEGRRVVYDYLVIATG  110 (274)
Q Consensus        89 ~~~v~~~~~~~~~~~~li~a~G  110 (274)
                      ...+.+++|+++++|.+++|+|
T Consensus       100 ~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         100 DGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TTEEEETTSCEEECSEEEECSC
T ss_pred             CCEEEECCCCEEECCEEEEeeC
Confidence            5678899999999999999998

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.6e-10  Score=90.66  Aligned_cols=40  Identities=18%  Similarity=0.290  Sum_probs=36.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeecc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWA   52 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~   52 (274)
                      |+||+|||||++||+||+.|++ |++|+|+|+++++|+...
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~   41 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY   41 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceE
Confidence            5899999999999999999984 999999999999997643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-10  Score=91.65  Aligned_cols=41  Identities=37%  Similarity=0.622  Sum_probs=36.7

Q ss_pred             CCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceee
Q 023975           10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        10 ~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~   50 (274)
                      ..++.+|+|||||++||+||+.|+ +|++|+|+|+++.+|+.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCccc
Confidence            345679999999999999999998 59999999999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.90  E-value=7.2e-10  Score=84.99  Aligned_cols=40  Identities=30%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             CCCCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975            9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      |+...++|+|||||++||++|+.|+ +|++|+|+||....+
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~   42 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4556689999999999999999998 599999999976544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.89  E-value=5.8e-10  Score=87.93  Aligned_cols=39  Identities=21%  Similarity=0.511  Sum_probs=36.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~   51 (274)
                      +++|+|||||++||+||+.|++ |++|+|+|+++++|+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCee
Confidence            5799999999999999999985 99999999999999754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.87  E-value=8.8e-10  Score=75.31  Aligned_cols=89  Identities=27%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeec-c-ceeeecCCccccceeeeccccccccEEEEEe-eEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-A-SLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   87 (274)
                      ..++++|||||++|+.+|..|+ .|.+|+++|+.+.+.... . .....+...+.          ..+++++... +..+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~----------~~GV~i~~~~~v~~i  103 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR----------EAGVDIRTGTQVCGF  103 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH----------HHTCEEECSCCEEEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccc----------ccccEEEeCCeEEEE
Confidence            3479999999999999999997 599999999988753110 0 00000000000          1134443221 1222


Q ss_pred             e--c-C----eEEeCCCeEEecCEEEEccC
Q 023975           88 T--E-N----EVLTAEGRRVVYDYLVIATG  110 (274)
Q Consensus        88 ~--~-~----~v~~~~~~~~~~~~li~a~G  110 (274)
                      .  . .    .+.+++|+++++|.+++|+|
T Consensus       104 ~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         104 EMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            1  1 1    47789999999999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.87  E-value=3.6e-09  Score=76.59  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce--eeccceeeecCCccccceeeeccccccccEEEEE-eeEEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE--ITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (274)
                      |..+|+|||||++|+.+|..|++ |.++.+++..+...  +....+...+.................++++... .+..+
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i   81 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF   81 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence            34579999999999999999974 76655554433322  2211111111110001111111111224555433 33344


Q ss_pred             e--cCeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           88 T--ENEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        88 ~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                      +  ...+.+++|+++.||.+++|+|..|....
T Consensus        82 ~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~  113 (183)
T d1d7ya1          82 DPQAHTVALSDGRTLPYGTLVLATGAAPRAVL  113 (183)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECCEE
T ss_pred             ccccceeEecCCcEeeeeeEEEEEEEEccccc
Confidence            3  33788899999999999999998876543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=5.8e-10  Score=90.23  Aligned_cols=101  Identities=13%  Similarity=0.005  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeE--EC------CC---------CcEEeecEEEEcccCCCCc--hhh
Q 023975          164 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY--LT------ST---------GDTINADCHFLCTGKPVGS--DWL  224 (274)
Q Consensus       164 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v--~~------~~---------g~~~~~d~vv~a~G~~~~~--~~~  224 (274)
                      .+...+.+.++..|+.+..+..+.++..+++....  ..      .+         +....++..+++.|.....  +++
T Consensus       142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li  221 (380)
T d2gmha1         142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY  221 (380)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence            35667778888899999999988888765443211  11      11         1256688889998875432  233


Q ss_pred             cccccccccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCC
Q 023975          225 KDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS  267 (274)
Q Consensus       225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~  267 (274)
                      ....+.....+.+++.-   +.....+++..+||+++.-++..
T Consensus       222 ~~~~l~~~~~~~~G~~s---ip~l~~~G~lLVGDAAG~vnP~~  261 (380)
T d2gmha1         222 KKFDLRANCEPQGGFQS---IPKLTFPGGLLIGCSPGFMNVPK  261 (380)
T ss_dssp             HHTTTTTTSCCCCGGGG---CCCCEETTEEECTTTTCCCBTTT
T ss_pred             hhhhhcccccccccccc---ccccccCCeeEEeccccccchhh
Confidence            33332222222222110   11124689999999999876654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=8.9e-10  Score=74.18  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccccccEEEEE-eeEEEecCe
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITENE   91 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   91 (274)
                      ++++|||||+.|+.+|..|+ .|.+|+|+|+.+.+..    +    .+.........+.+  .+++++.. ....+..+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~----~----d~~~~~~~~~~l~~--~GV~~~~~~~v~~~~~~~  102 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG----L----DEELSNMIKDMLEE--TGVKFFLNSELLEANEEG  102 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT----C----CHHHHHHHHHHHHH--TTEEEECSCCEEEECSSE
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC----C----CHHHHHHHHHHHHH--CCcEEEeCCEEEEEeCCE
Confidence            68999999999999999997 5999999999876531    1    11110000000000  24554433 233444444


Q ss_pred             EEeCCCeEEecCEEEEccCC
Q 023975           92 VLTAEGRRVVYDYLVIATGH  111 (274)
Q Consensus        92 v~~~~~~~~~~~~li~a~G~  111 (274)
                      + +.++..+.+|.+++|+|.
T Consensus       103 v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         103 V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             E-EETTEEEECSCEEEECCE
T ss_pred             E-EeCCCEEECCEEEEEEEe
Confidence            4 346778999999999984

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.84  E-value=1e-09  Score=73.31  Aligned_cols=88  Identities=19%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEe-e
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASP-A   84 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~   84 (274)
                      ..++++|||||+.|+-+|..|+    .|.+|+++|+.+.+...+       .+    .......+.+  .++++.... .
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~-------d~----~~~~~~~~~l~~~GI~v~~~~~v   85 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF-------DS----ELRKQLTEQLRANGINVRTHENP   85 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTS-------CH----HHHHHHHHHHHHTTEEEEETCCE
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccc-------cc----hhhHHHHHHHhhCcEEEEcCCEE
Confidence            3479999999999999996653    389999999987664111       00    0001111111  134443332 2


Q ss_pred             EEEec--C---eEEeCCCeEEecCEEEEccC
Q 023975           85 INITE--N---EVLTAEGRRVVYDYLVIATG  110 (274)
Q Consensus        85 ~~~~~--~---~v~~~~~~~~~~~~li~a~G  110 (274)
                      ..+..  +   .+.+++|..+.+|.+++|+|
T Consensus        86 ~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          86 AKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            23321  1   57889999999999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.83  E-value=9.4e-10  Score=73.24  Aligned_cols=37  Identities=24%  Similarity=0.491  Sum_probs=33.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ...+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            3479999999999999999998 499999999998764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.78  E-value=1.4e-09  Score=79.59  Aligned_cols=38  Identities=24%  Similarity=0.423  Sum_probs=33.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCceee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEIT   50 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~~g~~   50 (274)
                      .++|+||||||+||+||++|+ +|+ +|+||||.+.+++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~   43 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL   43 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccch
Confidence            479999999999999999998 498 59999999988754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=1.6e-09  Score=83.99  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=35.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~~g~~~   51 (274)
                      ..+||+||||||+||++|++|+ + |++|+|+|+++.+|+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            3589999999999999999984 4 99999999999888544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=9.4e-10  Score=83.19  Aligned_cols=39  Identities=15%  Similarity=0.079  Sum_probs=34.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-C-------CcEEEEcCCCCceeec
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-S-------ADVTLIDPKEYFEITW   51 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g-------~~v~vie~~~~~g~~~   51 (274)
                      .++|+|||||||||+||++|++ |       ++|+|+||.+.+|+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~   48 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV   48 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee
Confidence            3699999999999999999963 5       5899999999999654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.75  E-value=3.4e-09  Score=70.84  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ...+++|||||+.|+-+|..|+ .|.+|+++++.+.+.
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            4579999999999999999997 499999999988764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.74  E-value=3.5e-09  Score=70.47  Aligned_cols=36  Identities=11%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..+|+|||||+.|+.+|..|++ |.+|+|+|+.+.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            4789999999999999999974 99999999988653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.73  E-value=1.2e-08  Score=74.82  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeeccceeeecCCccccc--eeeeccccc--cccEEEE-EeeE
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKR--SVINHTDYL--VNGRIVA-SPAI   85 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~-~~~~   85 (274)
                      ++|+|||||++|+.+|..|+   ++.+|+++|+.+.+.+....+..++.......  ......+.+  .++++.. ..+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~   80 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence            47999999999999999997   37789999998876544333333222222111  111111111  2455533 3344


Q ss_pred             EEec--CeEEe---CCC--eEEecCEEEEccCCCCC
Q 023975           86 NITE--NEVLT---AEG--RRVVYDYLVIATGHKDP  114 (274)
Q Consensus        86 ~~~~--~~v~~---~~~--~~~~~~~li~a~G~~~~  114 (274)
                      .++.  +.+..   .++  ..+.||.+++|+|..+.
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~  116 (198)
T d1nhpa1          81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF  116 (198)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             eEeeccccceeeecccccccccccceeeEeecceee
Confidence            4543  34432   333  35789999999998754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=6.1e-09  Score=78.22  Aligned_cols=37  Identities=24%  Similarity=0.237  Sum_probs=33.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceee
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT   50 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~   50 (274)
                      .+|+|||||||||+||..|+   .|++|+|||+.+.+|+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~   41 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL   41 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCce
Confidence            48999999999999999985   38899999999998853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=7.5e-09  Score=80.56  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      .+||+||||||+||++|..|++ |++|+|+||.+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4699999999999999999985 9999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.66  E-value=2.4e-08  Score=66.97  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEee-EEE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPA-INI   87 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~   87 (274)
                      ..++|+|||||+.|+.+|..|+ .|.+|+++|+.+.+-...  +    ++..    .....+.+  .++++..... ..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~--~----d~~~----~~~~~~~l~~~gv~~~~~~~v~~i   98 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY--L----DKEF----TDVLTEEMEANNITIATGETVERY   98 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT--C----CHHH----HHHHHHHHHTTTEEEEESCCEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc--c----chhh----HHHHHHHhhcCCeEEEeCceEEEE
Confidence            3479999999999999999997 599999999987652110  0    1100    00001111  1344433222 223


Q ss_pred             ecC---eEEeCCCeEEecCEEEEcc
Q 023975           88 TEN---EVLTAEGRRVVYDYLVIAT  109 (274)
Q Consensus        88 ~~~---~v~~~~~~~~~~~~li~a~  109 (274)
                      ..+   .....+++++++|.+++|.
T Consensus        99 ~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          99 EGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             ECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EcCCCEEEEEeCCCEEECCEEEEEC
Confidence            222   3335678899999999873

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.64  E-value=1e-08  Score=68.27  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCceeeccceeeecCCccccceeeeccccc--cccEEEEEe-e
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASP-A   84 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~----~g~~v~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~   84 (274)
                      ...+++|||||+.|+.+|..|+    ++.+|+++|+.+.+-..           +.........+.+  .++++.... .
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-----------~d~~~~~~l~~~l~~~GV~v~~~~~v   87 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-----------FDHTLREELTKQLTANGIQILTKENP   87 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-----------SCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-----------cchHHHHHHHHHHHhcCcEEEcCCEE
Confidence            3479999999999999997664    36789999998765311           1111111111111  245554332 2


Q ss_pred             EEEe--cC---eEEeCCCeEEecCEEEEcc
Q 023975           85 INIT--EN---EVLTAEGRRVVYDYLVIAT  109 (274)
Q Consensus        85 ~~~~--~~---~v~~~~~~~~~~~~li~a~  109 (274)
                      ..+.  .+   .+.+++|+++++|.+++|.
T Consensus        88 ~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          88 AKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             EEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            2332  11   5888999999999999883

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.61  E-value=1.2e-08  Score=68.53  Aligned_cols=37  Identities=14%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ...+++|||||+.|+-+|..+++ |.+|+++|+.+.+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il   62 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM   62 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence            35799999999999999999974 99999999988664

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=1.5e-08  Score=67.53  Aligned_cols=37  Identities=30%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..++++|||||+.|+.+|..|+ .|.+|+|+|+.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            3579999999999999999987 599999999998764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-08  Score=68.21  Aligned_cols=88  Identities=22%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCceee--ccceeeecCCccccceeeeccccccccEEEEEe-e
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEIT--WASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-A   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   84 (274)
                      .++++|||||++|+-+|..|+     .|.+|+++++++.+...  ...+...+...+        .  ..++++.... +
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l--------~--~~GV~~~~~~~V  106 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV--------R--REGVKVMPNAIV  106 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH--------H--TTTCEEECSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH--------H--hCCcEEEeCCEE
Confidence            368999999999999887773     38999999998765311  000100000000        0  0134443221 1


Q ss_pred             EEE--ecC--eEEeCCCeEEecCEEEEccC
Q 023975           85 INI--TEN--EVLTAEGRRVVYDYLVIATG  110 (274)
Q Consensus        85 ~~~--~~~--~v~~~~~~~~~~~~li~a~G  110 (274)
                      ..+  +..  .+.+++|+++.+|.+++|+|
T Consensus       107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            222  222  68889999999999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.58  E-value=1.1e-08  Score=68.61  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      .++|+|||||+.|+-.|..|+ .|.+|+++++.+.+.
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999997 599999999987654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=6e-08  Score=69.94  Aligned_cols=107  Identities=25%  Similarity=0.330  Sum_probs=59.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCceeeccc--eee-ecCCccccceeee-cccccc--ccEEEEE-ee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFEITWAS--LRA-MVEPSFGKRSVIN-HTDYLV--NGRIVAS-PA   84 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g~~~~~--~~~-~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~   84 (274)
                      +.+|+|||||++|+.+|..|++ |.++++++..+.....+..  +.. ............. ......  ...+... ..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            4699999999999999999984 8887777665543322211  110 1010000000000 000000  1111111 11


Q ss_pred             EEEe--cCeEEeCCCeEEecCEEEEccCCCCCCChhH
Q 023975           85 INIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKTR  119 (274)
Q Consensus        85 ~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~~~  119 (274)
                      ...+  ...+...++.++.++.+++++|..|..|...
T Consensus        83 ~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~  119 (185)
T d1q1ra1          83 TAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE  119 (185)
T ss_dssp             EEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCH
T ss_pred             eeecccccEEEeeceeEEEeeeeeeeeecccCCCCch
Confidence            2222  3367788888999999999999987766643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.55  E-value=1.9e-08  Score=81.01  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +..||+||||+|++|+++|..|+ +|++|+|+|++...
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            45699999999999999999998 59999999997654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=2e-08  Score=67.29  Aligned_cols=37  Identities=24%  Similarity=0.471  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..++++|||||+.|+-+|..|+ .|.+|+|+|+.+.+.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            4579999999999999999997 599999999988764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.54  E-value=2.4e-08  Score=79.81  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh------cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ------FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~------~g~~v~vie~~~~~g   48 (274)
                      ..|||+||||||+||++|..|+      +|++|+||||.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            4599999999999999999984      499999999987654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.53  E-value=8.2e-08  Score=67.31  Aligned_cols=94  Identities=10%  Similarity=-0.153  Sum_probs=68.6

Q ss_pred             cCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEE
Q 023975          127 QAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTI  206 (274)
Q Consensus       127 ~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~  206 (274)
                      ++++.|+|+|..|+  ..|++|+++.+.+.+.+..++.....+.+.+++.||++++++.+.+++.+.  ..+.  +....
T Consensus        48 ggg~ig~e~A~~la--~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--v~l~--~~~~~  121 (156)
T d1djqa2          48 DTYFMAPSLAEKLA--TAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR--MEIY--NIWGD  121 (156)
T ss_dssp             CCSSHHHHHHHHHH--HTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTE--EEEE--ETTCS
T ss_pred             CCChHHHHHHHHHH--HcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcc--eEEE--eeecc
Confidence            34889999999999  679999999999888777777788889999999999999999999997543  2222  11122


Q ss_pred             eecEEEEcccCCCCchhhcc
Q 023975          207 NADCHFLCTGKPVGSDWLKD  226 (274)
Q Consensus       207 ~~d~vv~a~G~~~~~~~~~~  226 (274)
                      .++.+..++|..|+......
T Consensus       122 ~~~~v~~~~g~~~~~~~~~~  141 (156)
T d1djqa2         122 GSKRTYRGPGVSPRDANTSH  141 (156)
T ss_dssp             CSCCCCCCTTSCSSCCCCCC
T ss_pred             ccceeeeeeEEEecccCCcc
Confidence            34555555555555444433

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.6e-08  Score=65.79  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      .++++|||||+.|+-+|..|+ .|.+|+++++++.+-
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL   58 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc
Confidence            479999999999999999997 599999999988763

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=3e-08  Score=76.56  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=37.7

Q ss_pred             hCCcEEEcCceeeeeccCCCceeEECCCC----cEEeecEEEEcccCCC
Q 023975          175 SKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPV  219 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~  219 (274)
                      ..++.+..+++++.+...++.+.+.+.++    +++.+|.+|.|-|...
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccc
Confidence            46888999999999988888888887765    4799999999999754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=2.9e-08  Score=77.97  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCceeec
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITW   51 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~---~g~~v~vie~~~~~g~~~   51 (274)
                      ..+||+||||||+||+||+.|+   .|++|+|+|+++.+|+.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            3589999999999999999996   399999999999988654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=7.8e-08  Score=64.28  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ...+++|||||+.|+-+|..|++ |.+|+|+++...
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~   54 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL   54 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechh
Confidence            34689999999999999999974 999999997643

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.41  E-value=7.1e-08  Score=77.08  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCcee
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEI   49 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g~~v~vie~~~~~g~   49 (274)
                      .+||+|||+|+|||+||+.|+     +|++|+|+||.+..++
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            589999999999999998874     4999999999877653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.35  E-value=1.1e-07  Score=63.76  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ...+++|||||+.|+-+|..+++ |.+|+|+|+.+.+.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            35799999999999999999975 99999999988764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3.3e-06  Score=56.38  Aligned_cols=93  Identities=12%  Similarity=0.094  Sum_probs=72.6

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eE
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY  198 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v  198 (274)
                      .+.+..+++|.+|+|.|..|.  ....+|++++|.+.+.  ..+.+.+.+.+..+..++.+++++++.++..++..+ .+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~--~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v  102 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGV  102 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHT--TTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHh--hcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEE
Confidence            455666778999999999998  6788999999988753  355567777777778899999999999999876543 35


Q ss_pred             ECCCC------cEEeecEEEEccc
Q 023975          199 LTSTG------DTINADCHFLCTG  216 (274)
Q Consensus       199 ~~~~g------~~~~~d~vv~a~G  216 (274)
                      ++.+.      +++++|.|+++.|
T Consensus       103 ~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         103 RLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEECCCCceEEEEECCEEEEEeC
Confidence            44331      4699999999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.25  E-value=3.3e-07  Score=73.52  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|+||||+|++|+.+|+.|+ +|++|+|+|++..
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4689999999999999999997 5999999999743

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.14  E-value=7e-07  Score=71.49  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .||||||+|++|+.+|.+|+ +|++|+|+|++..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            48999999999999999997 5999999999754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.14  E-value=7.7e-07  Score=71.09  Aligned_cols=34  Identities=21%  Similarity=0.352  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .||+||||+|++|+.+|.+|+ .|.+|+|+|++..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            599999999999999999997 5999999999853

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.07  E-value=9.7e-07  Score=70.23  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      .||+||||||++|+.+|..|+++++|+|||++..
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCCCCEEEEecCCC
Confidence            4899999999999999999987799999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.04  E-value=2.7e-07  Score=69.43  Aligned_cols=31  Identities=35%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ++|+|||||++||++|++|+ +|++|+++|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            37999999999999999998 48877666653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.99  E-value=1.9e-06  Score=69.48  Aligned_cols=35  Identities=31%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-C-CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-S-ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g-~~v~vie~~~~   46 (274)
                      +.||+||||||.+|+.+|.+|++ + ++|+|||++..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            35999999999999999999984 5 79999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2e-05  Score=52.46  Aligned_cols=89  Identities=24%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             HHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHh-CCcEEEcCceeeeeccCCCce-e
Q 023975          120 TERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-T  197 (274)
Q Consensus       120 ~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~  197 (274)
                      .+.+..+++|.+|+|.|..|.  ....+|+++++.+.+..      .+.+.+.+++ .+|++++++++.++..+++.+ .
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~--~~a~~V~li~r~~~~~~------~~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~  101 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLA--GIVEHVTLLEFAPEMKA------DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVG  101 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHH--TTBSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEE
T ss_pred             CceEEEEeCCHHHHHHHHhhh--ccCCceEEEeccccccc------ccccccccccccceeEEcCcceEEEEccccceee
Confidence            455666777999999999998  56889999999876532      2344455554 579999999999999875543 3


Q ss_pred             EECC---CC--cEEeecEEEEccc
Q 023975          198 YLTS---TG--DTINADCHFLCTG  216 (274)
Q Consensus       198 v~~~---~g--~~~~~d~vv~a~G  216 (274)
                      +++.   +|  +++++|.|+++.|
T Consensus       102 v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2         102 LEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEEEETTTCCEEEEECSEEEECSC
T ss_pred             EEEEECCCCCEEEEECCEEEEEeC
Confidence            4432   34  3799999999987

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.95  E-value=2.7e-06  Score=68.48  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~--g~~v~vie~~~~   46 (274)
                      +.||+||||||.+|+..|..|.+  +++|+|||++..
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            45999999999999999999973  589999999864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=9.4e-06  Score=54.29  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             HHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHH-HhCCcEEEcCceeeeeccCCC--c
Q 023975          119 RTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEG--S  195 (274)
Q Consensus       119 ~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~--~  195 (274)
                      +.+.+..+++|.+|+|.|..|.  ....+|++++|.+.+..      .+.+.+.+ +..+|++++++++.++..++.  .
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~--~~a~~V~li~r~~~~ra------~~~~~~~l~~~~nI~v~~~~~v~~i~Gd~~~~~  104 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLT--KYGSKVYIIHRRDAFRA------SKIMQQRALSNPKIDVIWNSSVVEAYGDGERDV  104 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHT--TTSSEEEEECSSSSCCS------CHHHHHHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred             CCCEEEEEcCchHHHHHHHHHh--CCCCcEEEEEecccccc------chhhhhccccCCceEEEeccEEEEEEccCCccc
Confidence            3567777888999999999998  66789999999887642      23344444 445799999999999987654  2


Q ss_pred             e-eEEC---CCC--cEEeecEEEEcc
Q 023975          196 D-TYLT---STG--DTINADCHFLCT  215 (274)
Q Consensus       196 ~-~v~~---~~g--~~~~~d~vv~a~  215 (274)
                      + .+.+   .++  +++++|.|++++
T Consensus       105 v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2         105 LGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEEEEEEECCCCCEEEEECCEEEEEC
Confidence            2 2332   233  479999999874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.88  E-value=3.4e-05  Score=53.14  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~-v~vie~~~~~   47 (274)
                      ...+|+|||||.+|+-+|..+. .|.+ |+++.+.+..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            3568999999999999998875 4765 8899887654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.2e-05  Score=52.80  Aligned_cols=56  Identities=18%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCC-cEEeecEEEEcccC
Q 023975          160 FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGK  217 (274)
Q Consensus       160 ~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~  217 (274)
                      .........+...++..|+++..++.+.++.  ++++.+...+. +.++||.||+|+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         105 GLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             TSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             ccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCCC
Confidence            4445556677788999999999999999886  33444443322 36899999999994

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.3e-05  Score=50.37  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=30.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++|+|+|.|.+|+++|.+|. +|++|+++|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            3578999999999999999997 5999999998654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=6.3e-06  Score=58.45  Aligned_cols=88  Identities=23%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             hHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC---------c--CChhHHHHHHHHHHhCCcEEEcCcee
Q 023975          118 TRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------F--IGPKAGDKTRDWLISKKVDVKLGERV  186 (274)
Q Consensus       118 ~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~gv~i~~~~~v  186 (274)
                      ...+++..+++|+.|++.|..++  ..+.+++++.+.+.+..         .  ....+.+.+.+.+++.||++++++.|
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la--~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCcEEEEECccHHHHHHHHHHH--hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence            33567788888999999999998  67899999999876522         1  11245667778888899999999877


Q ss_pred             eeeccCCCceeEECCCCcEEeecEEEEcccCCCCc
Q 023975          187 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS  221 (274)
Q Consensus       187 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~  221 (274)
                      +.             +. ...+|.||+|||..|..
T Consensus       119 t~-------------~~-~~~~d~vilAtG~~~~~  139 (179)
T d1ps9a3         119 TA-------------DQ-LQAFDETILASGIPNRA  139 (179)
T ss_dssp             CS-------------SS-SCCSSEEEECCCEECCT
T ss_pred             cc-------------cc-cccceeEEEeecCCCcc
Confidence            42             11 24689999999987644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.49  E-value=3.9e-05  Score=54.36  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .++|+|||||..|..+|.+|. .|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            379999999999999999997 5999999999865

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.46  E-value=9.3e-05  Score=51.13  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CcEEEE--cCChHHHHHHHHhh-cCCcEEEEcCCCCce
Q 023975           14 KRVVVI--GGGVAGSLVAKSLQ-FSADVTLIDPKEYFE   48 (274)
Q Consensus        14 ~~v~II--GaG~aGl~~A~~L~-~g~~v~vie~~~~~g   48 (274)
                      ..++|+  |||..|+.+|..|+ +|.+|+++++.+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            456665  99999999999997 599999999987664

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.45  E-value=5.6e-05  Score=53.75  Aligned_cols=33  Identities=27%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|||+|..|++.|..|+ +|++|+++++.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            68999999999999999997 5999999999753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.38  E-value=0.00077  Score=43.04  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..++|+|||+|.+|+-.|..|++ ..+++++.+.+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            45899999999999999999985 55666665544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.33  E-value=0.00012  Score=52.42  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             HHHHHccCCchhhhHHHHhhhhCCCC-eEEEEeCCCccCC---------cCChhHHHHHHHHHHhCCcEEEcCceeeeec
Q 023975          121 ERLNQYQAGPTGVELAGEIAVDFPEK-KVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDS  190 (274)
Q Consensus       121 ~~~~~~~~g~~~~e~a~~l~~~~~~~-~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~  190 (274)
                      +++..+++|++|+++|..|.  ..|. .|+++.+.+.+..         .................+.++.....+....
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~--~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLA--RLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHH--HTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CEEEEECChHHHHHHHHHHH--HCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            34556788999999999998  4565 5999999887633         1122233444445566778887766553221


Q ss_pred             cCCCceeEECCCCcEEeecEEEEcccCCCCch--hhcccccccccCCCCcEEeCC-CccccCCCCeEEeccccCCCCC
Q 023975          191 VSEGSDTYLTSTGDTINADCHFLCTGKPVGSD--WLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRVS  265 (274)
Q Consensus       191 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~--~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~i~~~Gd~~~~~~~  265 (274)
                             ....+..+..++.+++++|......  ..............+....+. .+++ +.+.+|+.||+++.++.
T Consensus        83 -------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~g~vigg~~~  152 (196)
T d1gtea4          83 -------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQT-SEPWVFAGGDIVGMANT  152 (196)
T ss_dssp             -------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBC-SSTTEEECSGGGCSCCC
T ss_pred             -------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCC-CcccccccccccCCcch
Confidence                   1111222456789999999643222  111111111233444555554 4676 79999999999876554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00018  Score=49.94  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=22.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcE
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADV   38 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v   38 (274)
                      ..++|+|||||..|+-+|..+.+ |.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            35799999999999999999974 7653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00057  Score=45.10  Aligned_cols=37  Identities=35%  Similarity=0.527  Sum_probs=33.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..++|+|||+|-+++-.|..|++ ..+|+++-|.+.+.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            46899999999999999999986 78899999988764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00017  Score=50.30  Aligned_cols=34  Identities=21%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      ++|+|||+|..|...|..|+ .|++|++++|.+.-
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            47999999999999999997 49999999997653

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.0012  Score=45.19  Aligned_cols=91  Identities=18%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             HHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCce-eEE-
Q 023975          122 RLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL-  199 (274)
Q Consensus       122 ~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~-  199 (274)
                      ++..+++|.+|+|+|..+.+ .....++++.+.+.....    ........+...+++++.+..+.++..+++.. .+. 
T Consensus        47 kVvVIGGGdtA~D~A~~a~r-~GA~~V~vi~rr~~~~~~----a~~~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~  121 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALR-CGARRVFLVFRKGFVNIR----AVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQF  121 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSCGGGCC----SCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCChhHHHHHHHHHH-cCCcceeEEEeCChhhhc----cchhheeecccccceeEeccccEEEEecCCceEEEEE
Confidence            47778889999999988762 234578888886643211    22233445566889999888887776555432 111 


Q ss_pred             -----CCCC---------cEEeecEEEEcccC
Q 023975          200 -----TSTG---------DTINADCHFLCTGK  217 (274)
Q Consensus       200 -----~~~g---------~~~~~d~vv~a~G~  217 (274)
                           .++|         .+++||.||+|.|.
T Consensus       122 ~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         122 VRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence                 1222         26899999999983

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.00017  Score=48.19  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|+|+|..|...|..|. .|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            47999999999999999997 6999999999764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.03  E-value=0.00031  Score=49.06  Aligned_cols=33  Identities=33%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      -+|+|||+|.+|+.||..+.+ |..|+++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            599999999999999988874 999999998754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.02  E-value=0.00047  Score=47.26  Aligned_cols=39  Identities=28%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             CCCCCCCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975            8 QSEGKNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus         8 ~~~~~~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      +|+.++++|+|||+|..|.++|+.|. .+ .+++++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            45667799999999999999998876 34 48999997764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.01  E-value=0.00029  Score=48.52  Aligned_cols=34  Identities=35%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      .-+|+|||+|.+|+.++..+.+ |.+|+++|.+..
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            4699999999999999999875 999999998643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.88  E-value=0.00029  Score=47.15  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++++|||+|..|...|..|. .|++|+++|+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            47999999999999999997 5999999998764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00047  Score=45.51  Aligned_cols=37  Identities=41%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      ..++|+|||+|.+++-.|..|.+ ..+|+++-|.+.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            46899999999999999999986 77899999887664

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00044  Score=49.38  Aligned_cols=33  Identities=39%  Similarity=0.573  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|||+|.-|...|..++ .|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            69999999999999998886 6999999998864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.80  E-value=0.00051  Score=49.46  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..|+..|..|+ +|++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            36999999999999999997 6999999998754

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.0041  Score=45.25  Aligned_cols=91  Identities=14%  Similarity=0.020  Sum_probs=59.4

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccC----------Cc--------C---Ch---hHHHHHHHHHHh-CCcEE
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLL----------EF--------I---GP---KAGDKTRDWLIS-KKVDV  180 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~----------~~--------~---~~---~~~~~~~~~~~~-~gv~i  180 (274)
                      +++|..|++.|...+  +.+.++.++..+..-.          ..        .   .+   ....++++.+++ .++.+
T Consensus         8 IGgG~AG~eAA~~aA--R~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL~i   85 (230)
T d2cula1           8 VGAGFSGAETAFWLA--QKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLHL   85 (230)
T ss_dssp             ECCSHHHHHHHHHHH--HTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEEE
T ss_pred             ECcCHHHHHHHHHHH--HCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCHHH
Confidence            455778999988888  6788888887642110          00        0   01   122334444543 48888


Q ss_pred             EcCceeeeeccCCC-ceeEECCCCcEEeecEEEEcccCCC
Q 023975          181 KLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       181 ~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      +... |.++..+++ ...|++.+|.++.|..||++||...
T Consensus        86 ~q~~-V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          86 FQAT-ATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             EECC-EEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             Hhcc-ceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            8665 555555555 4568999999999999999999543

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.00078  Score=54.76  Aligned_cols=58  Identities=9%  Similarity=-0.139  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHhCCcEEEcCceeeeeccC--CCce-eEECCCCcEEeecEEEEcccCCCC
Q 023975          163 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       163 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      .++.+.+-+...-.|..+.+++.|.++..+  ++.+ .+..++|+++.|+.||....+.|.
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            468888888888899999999999998764  3333 567888999999999999887663

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.66  E-value=0.0007  Score=48.46  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..||.+|..+++|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHCCCcEEEEECCHH
Confidence            479999999999999988888999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.00099  Score=42.97  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++|+|||+|..|..-|..|. .|.+|++++....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            4589999999999999999987 5999999986543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.0018  Score=44.16  Aligned_cols=38  Identities=21%  Similarity=0.492  Sum_probs=32.1

Q ss_pred             CCCCCCcEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975            9 SEGKNKRVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus         9 ~~~~~~~v~IIG-aG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +...+++|.||| .|.-|.+.|..|+ .|++|.++|+...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            334568999999 6999999999997 5999999998653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.57  E-value=0.00093  Score=45.22  Aligned_cols=35  Identities=23%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      .+++|.|||+|..|.++|+.|. ++  .++.++|..+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            3579999999999999999986 34  58999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.57  E-value=0.00065  Score=48.28  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      +.+|+|||+|.-|.+.|..|+. |++|++..+++.
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            3689999999999999999984 899999998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.57  E-value=0.00081  Score=47.68  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      -++|+|||+|.-|...|..+. .|++|+++|+++.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            368999999999999997765 6999999999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.0011  Score=45.20  Aligned_cols=33  Identities=36%  Similarity=0.613  Sum_probs=28.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK   44 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~   44 (274)
                      ..++|+|||||..|+.-|..|.+ |.+|+|+.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999999999988874 9999999643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.50  E-value=0.0025  Score=43.62  Aligned_cols=36  Identities=31%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CCCCcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      .++.+|.|||+|..|.++|+.|. +|.  ++.++|..+.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~   56 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLED   56 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            34579999999999999999996 454  7999998653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.38  E-value=0.0016  Score=45.03  Aligned_cols=32  Identities=19%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.|||.|.-|.+.|..|+ +|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            36999999999999999997 599999999874

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.25  E-value=0.017  Score=41.80  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=27.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..++|+|||+|-+|+-+|..|++ +.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999974 77766665544

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.19  E-value=0.0023  Score=42.97  Aligned_cols=80  Identities=16%  Similarity=0.062  Sum_probs=50.9

Q ss_pred             HHHhhhhCCCCeEEEEeCCCccCC--cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCceeEECCCCcEEeecEEEE
Q 023975          136 AGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL  213 (274)
Q Consensus       136 a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~  213 (274)
                      +..+..+....++.++...+....  .+.+.+.+.+.+.+++.||++..+.....+..+.....+++.+|+++.+|.+++
T Consensus        59 ~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2          59 AYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINL  138 (141)
T ss_dssp             HHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEE
T ss_pred             HHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEe
Confidence            444444344456777665544221  111223344555567789999998765555556666778899999999999987


Q ss_pred             cc
Q 023975          214 CT  215 (274)
Q Consensus       214 a~  215 (274)
                      ..
T Consensus       139 vP  140 (141)
T d1fcda2         139 IP  140 (141)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.13  E-value=0.0026  Score=44.70  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=27.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ++|.|||+|.-|.+.|..|. .|++|++..|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            47999999999999999998 59999999774

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.11  E-value=0.0043  Score=40.90  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      +.++|+|||+|-+++-.|..|++ -.+|+++-|.+.+.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            46899999999999999999986 77899999988875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.87  E-value=0.0051  Score=41.26  Aligned_cols=33  Identities=36%  Similarity=0.526  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.++|+.|. ++ .+++++|..+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            58999999999999998886 34 48999997664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.78  E-value=0.0044  Score=42.90  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|+.++..++ .|.+|+++|+++.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            458999999999999998886 5999999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.78  E-value=0.0055  Score=44.64  Aligned_cols=88  Identities=11%  Similarity=-0.045  Sum_probs=59.9

Q ss_pred             HHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCC----------cCChhHHHHHHHHHHhCCcEEEcCceeeeeccCC
Q 023975          124 NQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE----------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE  193 (274)
Q Consensus       124 ~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~  193 (274)
                      ..+++|.+|+.+|..|.....+.+|+++.+.+.+..          .....+.......+++.|+++..++.|..   +.
T Consensus         5 ~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~   81 (230)
T d1cjca2           5 CVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---DV   81 (230)
T ss_dssp             EEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---TB
T ss_pred             EEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---cc
Confidence            456789999999999976567889999998876521          11223455566777889999998887621   10


Q ss_pred             CceeEECCCCcEEeecEEEEcccCCCC
Q 023975          194 GSDTYLTSTGDTINADCHFLCTGKPVG  220 (274)
Q Consensus       194 ~~~~v~~~~g~~~~~d~vv~a~G~~~~  220 (274)
                      ...  .+    .-.+|.+++|+|..+.
T Consensus        82 ~~~--~l----~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          82 TVQ--EL----QDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             CHH--HH----HHHSSEEEECCCCCEE
T ss_pred             cHH--HH----HhhhceEEEEeecccc
Confidence            000  00    1257999999998653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.76  E-value=0.0059  Score=41.25  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      ...+|.|||+|..|.++|+.|. ++  -++.|+|..+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            3568999999999999999986 34  47999997654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0089  Score=38.27  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             CCcEEEEcCCh-----------HHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGV-----------AGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~-----------aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      .++|+|||+||           ++..|++.|++ |++++++..++.-
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            47899999996           57777888875 9999999988753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0059  Score=42.31  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|+.++..++ .|. +|+++|+++.
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            458999999999999998887 587 7999998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0069  Score=41.85  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=29.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ....|+|+|+|+.|+.++..++ .|.+|+++++++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3468999999999999888776 5999999998764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.59  E-value=0.0082  Score=40.16  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      .+|.|||+|..|.++|+.|. ++  .++.|+|..+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            58999999999999998886 43  47999997764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.54  E-value=0.0068  Score=40.77  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=27.7

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.++|+.|. +|  .+++++|..+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            68999999999999999886 44  47999997654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.49  E-value=0.007  Score=41.67  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ....|+|+|+|+.|+.++..++ .|.+|+++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3468999999999999988876 599999999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.48  E-value=0.0052  Score=43.45  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             CcEEEE-cCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVI-GGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~II-GaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|| |+|--|.+.|..|. .|++|++..|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            369999 67999999999997 5999999999754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.45  E-value=0.0072  Score=40.49  Aligned_cols=33  Identities=27%  Similarity=0.385  Sum_probs=27.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      .+|.|||+|..|.++|+.|. ++  .++.|+|..+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~   37 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKE   37 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            58999999999999998886 44  47999997653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.011  Score=40.30  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=28.3

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      +.+|.|||+|..|.++|+.|. ++  .++.|+|..+.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~   55 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTD   55 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCch
Confidence            358999999999999999986 34  47999997653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0091  Score=41.31  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..++|+|+|+|=++-++++.|. .|.+++|+.|+..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~   52 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS   52 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence            4579999999999999999997 4889999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.018  Score=36.55  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..+|.|+|||--|-..|..+++ |+++.++|+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            4689999999999999998876 999999998765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.19  E-value=0.0095  Score=37.68  Aligned_cols=77  Identities=8%  Similarity=-0.013  Sum_probs=49.1

Q ss_pred             hHHHHHHHccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCcCChhHHHHHHHHHHhCCcEEEcCceeeeeccCCCcee
Q 023975          118 TRTERLNQYQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT  197 (274)
Q Consensus       118 ~~~~~~~~~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~  197 (274)
                      +..+++..+++|.+|.+++.+|.  ...++++++.+.+....              ...++.  ....+.++...  ...
T Consensus        30 f~gK~VlVVG~g~Sa~dia~~l~--~~ak~v~~~~~r~~~~~--------------~~~~~~--~~~~i~~~~~~--~~~   89 (107)
T d2gv8a2          30 FVGESVLVVGGASSANDLVRHLT--PVAKHPIYQSLLGGGDI--------------QNESLQ--QVPEITKFDPT--TRE   89 (107)
T ss_dssp             GTTCCEEEECSSHHHHHHHHHHT--TTSCSSEEEECTTCCSC--------------BCSSEE--EECCEEEEETT--TTE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHH--HhcCEEEEEEecCcccc--------------ccccce--ecCCeeEEecC--CCE
Confidence            34566677777999999999998  45566666666544321              011222  22345555433  336


Q ss_pred             EECCCCcEEe-ecEEEEc
Q 023975          198 YLTSTGDTIN-ADCHFLC  214 (274)
Q Consensus       198 v~~~~g~~~~-~d~vv~a  214 (274)
                      +.+.||+.+. .|.||+|
T Consensus        90 v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          90 IYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEETTTEEECCCSEEEEC
T ss_pred             EEEcCCCEEeCCCEEEEC
Confidence            8889998876 6999987

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.14  E-value=0.012  Score=40.87  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ....|+|+|+|+.|++++..++ .|. +|+++|+++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            3468999999999999998887 586 799999865

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.018  Score=37.27  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             CCCcEEEEcCCh-----------HHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGV-----------AGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~-----------aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      ..++|+|||+||           ++..++++|++ |++++++..++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            347999999997           56777788875 9999999988753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.10  E-value=0.011  Score=40.70  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=27.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      ++|.|||.|.-|.+.|+.|+ .|+  +|..+|++..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            57999999999999999997 464  6888898653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.08  E-value=0.014  Score=38.93  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      .+|+|||+|..|.++|+.|. ++  .++.|+|..+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            37999999999999998886 33  58999998764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.016  Score=34.06  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~   47 (274)
                      +.|.|+|||--|-..+...++ |+++.+++..+..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            689999999999999988876 9999999987643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.011  Score=40.56  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +++|.+||-|.-|...|.+|. +|++|.++|++..
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            357999999999999999997 5999999998743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.97  E-value=0.0084  Score=41.96  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|+.++..++ .|+ +|+++|+++.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccc
Confidence            468999999999999998886 587 7999998653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.011  Score=39.52  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g--~~v~vie~~~~   46 (274)
                      ++|.|||+|..|.++|+.|. ++  -++.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            47999999999999999886 34  36999997653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.86  E-value=0.018  Score=44.97  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             CCCCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           10 EGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        10 ~~~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      |+++++|+|.|| |..|..++..|. +|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            346678999995 999999998885 699999998654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.019  Score=39.52  Aligned_cols=35  Identities=29%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ....|+|+|+|+.|+.++..++ .|+++++++..+.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            3468999999999999997776 5999999987654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.58  E-value=0.016  Score=38.78  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=27.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cC--CcEEEEcCCCCc
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FS--ADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g--~~v~vie~~~~~   47 (274)
                      ++|.|||| |..|.++|+.|. ++  .++.|+|..+..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSI   38 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhh
Confidence            37999996 999999999886 45  489999986543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.54  E-value=0.023  Score=39.35  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=28.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ....|+|+|+|+.|+.++..++ .|. +|++.|.++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            3468999999999999999887 587 5777787653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.49  E-value=0.016  Score=39.53  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||-|.-|...|..|. .|++|.++++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            36999999999999999996 5999999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.029  Score=37.78  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      -.|+|+|.|..|...+..|. .|.+|+++|..+.
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            36999999999999999997 5999999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.40  E-value=0.021  Score=39.22  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      .+++|+|+|+|-++-++++.|. .|. +++|+.|+..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            4579999999999999999997 475 7999988654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.025  Score=34.86  Aligned_cols=37  Identities=22%  Similarity=0.144  Sum_probs=30.7

Q ss_pred             CCCCCCcEEEEcCChHHHHH-HHHhh-cCCcEEEEcCCC
Q 023975            9 SEGKNKRVVVIGGGVAGSLV-AKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus         9 ~~~~~~~v~IIGaG~aGl~~-A~~L~-~g~~v~vie~~~   45 (274)
                      ++...++|-+||-|=+|+++ |..|. +|++|+-.|...
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            44566899999999999888 77776 699999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.26  E-value=0.0015  Score=48.03  Aligned_cols=36  Identities=11%  Similarity=0.219  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCCce
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEYFE   48 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~~g   48 (274)
                      .++++|||||..|+-+|..|++ |.+|+++++.+.+.
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            4689999999999999999985 99999999988764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.24  E-value=0.029  Score=37.73  Aligned_cols=33  Identities=27%  Similarity=0.522  Sum_probs=27.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      .+|.|||+|..|.++|+.|. ++ .++.|+|..+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            58999999999999998775 33 37999997664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.24  E-value=0.026  Score=39.07  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|-|||-|.-|...|..|. .|++|.++++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            58999999999999999997 5999999999764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.028  Score=37.32  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             CcEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~--g~~v~vie~~~~   46 (274)
                      .+|.|||+|..|.++|+.|. +  ..++.++|..+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~   36 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKK   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            37999999999999998886 3  358999997653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.20  E-value=0.026  Score=39.18  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|-|||-|.-|...|.+|. .|++|.++++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            47999999999999999997 5999999998653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.08  E-value=0.026  Score=38.06  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|.|||.|..|.+.|..|. .|++++++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            37999999999999999997 5999999987654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.95  E-value=0.027  Score=39.75  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ....|+|+|+|+.|+.++..++ .|. +|+++|..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3468999999999999998876 455 788888764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.94  E-value=0.026  Score=37.66  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             cEEEEcC-ChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023975           15 RVVVIGG-GVAGSLVAKSLQ-FSA--DVTLIDPKEY   46 (274)
Q Consensus        15 ~v~IIGa-G~aGl~~A~~L~-~g~--~v~vie~~~~   46 (274)
                      +|+|||| |..|.++|+.|. ++.  ++.++|.++.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~   37 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT   37 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc
Confidence            7999996 999999999997 343  6899997653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.86  E-value=0.024  Score=38.84  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|+.++..++ .|++|++++.++.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            468999999999999887776 5899999987653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.69  E-value=0.021  Score=37.21  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=25.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--cCCcEE-EEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVT-LIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--~g~~v~-vie~~~   45 (274)
                      +.++|+|+|||-+|-+.+.++.  .+++++ ++|..+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            3479999999999999988875  366644 455444

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.034  Score=37.77  Aligned_cols=34  Identities=32%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..+.++|||-|..|-.+|..|+ .|.+|++.|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            3579999999999999999998 599999999865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.64  E-value=0.034  Score=38.49  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|+.++..++ .| .+|+++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            457999999999999998887 56 57999998764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.50  E-value=0.046  Score=37.11  Aligned_cols=34  Identities=35%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      .+.+|+|||+|-.|-.+|.+|. +|. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4579999999999999999997 587 599998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.041  Score=39.00  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +++|+|+|| |..|..++..|. +|++|+++.|++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            478999995 999999998775 799999998864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.29  E-value=0.13  Score=38.38  Aligned_cols=55  Identities=11%  Similarity=0.039  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhCCcEEEcCce-eeeeccCCCceeEEC-CCCc--EEeecEEEEcccCCC
Q 023975          165 AGDKTRDWLISKKVDVKLGER-VNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPV  219 (274)
Q Consensus       165 ~~~~~~~~~~~~gv~i~~~~~-v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~  219 (274)
                      +.+.+.+.+++.+..+..+.. +..+..+++...|.+ .+|+  ++.||.||.|.|...
T Consensus       105 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         105 VTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence            455566667777766666654 445555666666655 4554  578999999999764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.24  E-value=0.049  Score=41.00  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+|+|+|| |..|...+.+|. +|++|+++.|...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            467999997 999999998886 6999999998654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.058  Score=35.93  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             CcEEEEc-CChHHHHHHHHhh-c---CCcEEEEcCCC
Q 023975           14 KRVVVIG-GGVAGSLVAKSLQ-F---SADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIG-aG~aGl~~A~~L~-~---g~~v~vie~~~   45 (274)
                      ++|.||| +|..|.++|+.|. +   ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4799999 5999999998874 2   46899999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.14  E-value=0.11  Score=38.19  Aligned_cols=33  Identities=27%  Similarity=0.220  Sum_probs=25.7

Q ss_pred             HccCCchhhhHHHHhhhhCCC-CeEEEEeCCCccCC
Q 023975          125 QYQAGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLE  159 (274)
Q Consensus       125 ~~~~g~~~~e~a~~l~~~~~~-~~v~~~~~~~~~~~  159 (274)
                      .+++|.+|+-+|..|.  ..| ..++++.+.+.+..
T Consensus         6 IvGaG~aGl~~A~~L~--~~Gi~~V~V~Er~~~~~~   39 (288)
T d3c96a1           6 IAGAGIGGLSCALALH--QAGIGKVTLLESSSEIRP   39 (288)
T ss_dssp             EECCSHHHHHHHHHHH--HTTCSEEEEEESSSSCCC
T ss_pred             EECcCHHHHHHHHHHH--hCCCCeEEEEeCCCCCCC
Confidence            4677889999999998  457 48999999876543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.10  E-value=0.048  Score=40.78  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++++|+|+|| |..|-..+..|. +|++|+++.|...
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            3579999997 999999998885 6999999998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.06  E-value=0.058  Score=36.24  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=28.0

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ++|.+||+|--|.+.|..|. .++++++.++..
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            36999999999999998886 599999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.94  E-value=0.059  Score=37.16  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=27.9

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ....|+|+|+|+.|++++..++ .|. +|+++|.++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            3457999999999999998887 475 688888765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.78  E-value=0.05  Score=36.75  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ..+.++|+|=|..|-.+|..|+ .|.+|+|.|..+.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            3589999999999999999998 5999999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.69  E-value=0.047  Score=40.53  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +++|+|.|| |..|-..+.+|. +|++|+.+++.+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            357999998 999999999996 699999999865

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.64  E-value=0.12  Score=37.19  Aligned_cols=42  Identities=10%  Similarity=0.042  Sum_probs=28.0

Q ss_pred             CCcEEEcCceeeeeccCCCc--ee-EEC-----C----------CC--cEEeecEEEEcccC
Q 023975          176 KKVDVKLGERVNLDSVSEGS--DT-YLT-----S----------TG--DTINADCHFLCTGK  217 (274)
Q Consensus       176 ~gv~i~~~~~v~~i~~~~~~--~~-v~~-----~----------~g--~~~~~d~vv~a~G~  217 (274)
                      .++.+.+.....++..++++  +. +++     .          .|  .+++||.||.|+||
T Consensus       164 ~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         164 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            46788888888888765432  21 221     1          12  25899999999996

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.41  E-value=0.083  Score=36.44  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~   46 (274)
                      ..++|+|+|+|-++-++++.|.+..++.|+.|+..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~~   51 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVE   51 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccccceeeehhhhh
Confidence            45799999999999999999975338999998643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.26  E-value=0.061  Score=34.95  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=27.6

Q ss_pred             CcEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCc
Q 023975           14 KRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF   47 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~~g~~v~vie~~~~~   47 (274)
                      +.++|+|.|..|...+..|+ +.++.++|..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~~   33 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR-GSEVFVLAEDENV   33 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC-GGGEEEEESCTTH
T ss_pred             CEEEEECCCHHHHHHHHHHc-CCCCEEEEcchHH
Confidence            36899999999999999995 5678889887653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.24  E-value=0.081  Score=36.35  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=26.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcE-EEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADV-TLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v-~vie~~~   45 (274)
                      ...+|+|+|+|+.|++++..++ .|.++ ++.++++
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            3468999999999999998886 47755 4556544

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.19  E-value=0.05  Score=37.42  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..++|+|+|+|-++-++++.|. .+.+++|+.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4579999999999999998886 477999999875

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.86  E-value=0.091  Score=35.20  Aligned_cols=33  Identities=21%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             CcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      ++|.+||+|.-|.+.|..|. .| +++.+++|++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            37999999999999998775 44 89999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.81  E-value=0.096  Score=35.91  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~~   46 (274)
                      ...|+|+|+|+.|++++..++ . +.+|+.+++.+.
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            356999999999999998876 3 557888887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.47  E-value=0.1  Score=36.49  Aligned_cols=36  Identities=36%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             CCCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           11 GKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      -+.+.++|.|| |-.|..+|..|. .|++|++++|+..
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            35689999994 889999999987 5999999999753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.14  Score=35.44  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~~   46 (274)
                      ..++|+|+|+|-+|-++++.|. .|. +++++.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4579999999999999998886 454 7889998754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.85  E-value=0.14  Score=33.80  Aligned_cols=31  Identities=23%  Similarity=0.471  Sum_probs=25.1

Q ss_pred             CcEEEEc-CChHHHHHHHHhh-cC--CcEEEEcCC
Q 023975           14 KRVVVIG-GGVAGSLVAKSLQ-FS--ADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIG-aG~aGl~~A~~L~-~g--~~v~vie~~   44 (274)
                      .+|.||| +|..|.++|+.|. ++  -++.++|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3799999 6999999999986 43  368898853

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.69  E-value=0.068  Score=38.40  Aligned_cols=20  Identities=30%  Similarity=0.192  Sum_probs=16.9

Q ss_pred             eEECCCCcEEeecEEEEcccC
Q 023975          197 TYLTSTGDTINADCHFLCTGK  217 (274)
Q Consensus       197 ~v~~~~g~~~~~d~vv~a~G~  217 (274)
                      +|+++|| ++++|.||+||||
T Consensus       216 gV~~~dg-~~~~D~VV~ATGf  235 (235)
T d1w4xa2         216 GVRTSER-EYELDSLVLATGF  235 (235)
T ss_dssp             EEEESSC-EEECSEEEECCCC
T ss_pred             eEEECCC-EEcCCEEEeCCCC
Confidence            3667777 5899999999997

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.52  E-value=0.29  Score=35.07  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc---------------------C-CcEEEEcCCCCce
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF---------------------S-ADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~---------------------g-~~v~vie~~~~~g   48 (274)
                      ..++|+|||+|-.++=||..|.+                     | .+|.++.|.....
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~   96 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQ   96 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGG
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHh
Confidence            46899999999999999988754                     3 4799999887543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.49  E-value=0.17  Score=34.96  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..+.|.|||.|..|-..|..|+. |.+|..+++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            35789999999999999999974 99999999864

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.42  E-value=0.14  Score=37.39  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=27.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~   44 (274)
                      ..+|+|||+|-.|..+|..|.+ |. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4689999999999999999985 76 78888854

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.27  E-value=0.16  Score=38.98  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++++|+|.|| |..|...+..|. +|++|..+++...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3589999995 899999998886 6999999998653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.90  E-value=0.17  Score=35.53  Aligned_cols=34  Identities=32%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+.|.|||.|..|-.+|..|+ .|.+|..+++...
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccc
Confidence            478999999999999999998 4999999998543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.84  E-value=0.2  Score=34.28  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=27.7

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~~   46 (274)
                      ...|+|+|+|..|++++..++ .| .+|++++.++.
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            357999999999999998887 44 68888887654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.2  Score=38.32  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .++|+|.|| |..|...+.+|. +|++|+.+|+..
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            468999996 999999998885 699999998643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.34  E-value=0.19  Score=34.22  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=26.4

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g-~~v~vie~~~   45 (274)
                      ...|+|+|+|+.|+.++..++ .| ..|++.++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            468999999999999998876 45 4667778765

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.17  E-value=0.24  Score=34.73  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      .+.|.|||-|..|-..|..|+. |.+|..+++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            5799999999999999999984 999999997543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.14  E-value=0.11  Score=35.01  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=18.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ   33 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~   33 (274)
                      ..+|.|||| |..|.++|+.|.
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~   25 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIA   25 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHH
Confidence            459999997 999999999986

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.19  Score=38.36  Aligned_cols=31  Identities=39%  Similarity=0.526  Sum_probs=26.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ++|+|+|| |..|...+..|. +|++|+++++-
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            36999996 999999998886 69999999864

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.82  E-value=0.95  Score=31.93  Aligned_cols=13  Identities=15%  Similarity=0.107  Sum_probs=11.8

Q ss_pred             EEeecEEEEcccC
Q 023975          205 TINADCHFLCTGK  217 (274)
Q Consensus       205 ~~~~d~vv~a~G~  217 (274)
                      .++||.||.|+||
T Consensus       204 ~i~~dlvi~AIGy  216 (216)
T d1lqta1         204 ELPAQLVVRSVGY  216 (216)
T ss_dssp             EEECSEEEECSCE
T ss_pred             EEECCEEEECCCC
Confidence            6899999999996

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.70  E-value=0.27  Score=34.57  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ..++|+|-|.|-.|..+|..|. .|.+|++.|...
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence            4589999999999999999997 599999998753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.56  E-value=0.29  Score=37.43  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +++.|+|+|| |..|...+..|. +|++|.++-|+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4579999996 999999998885 699999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.48  E-value=0.39  Score=28.68  Aligned_cols=33  Identities=21%  Similarity=0.110  Sum_probs=26.3

Q ss_pred             CCcEEEEcCChHHHHH-HHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLV-AKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~-A~~L~-~g~~v~vie~~~   45 (274)
                      +++|-+||-|=+|+++ |..|+ +|++|.-.|...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3578999988888866 56665 699999999764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=88.46  E-value=0.15  Score=39.55  Aligned_cols=57  Identities=23%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             HHHHHHHhCCcEEEcCceeeeeccCCCc-e--eEEC--CCC-----cEEeecEEEEcccCCCCchhh
Q 023975          168 KTRDWLISKKVDVKLGERVNLDSVSEGS-D--TYLT--STG-----DTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       168 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~--~v~~--~~g-----~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      .+..+.+..+++|+++++|++|..++++ .  .++.  .++     +++.||.||+|.|....+.+|
T Consensus       228 ~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL  294 (370)
T d3coxa1         228 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL  294 (370)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence            3555555566999999999999877653 2  2222  222     268899999999975545544

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.43  E-value=0.22  Score=33.97  Aligned_cols=33  Identities=30%  Similarity=0.335  Sum_probs=24.8

Q ss_pred             CcEEEEcCChHHHHHHHH--h-h----cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKS--L-Q----FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~--L-~----~g~~v~vie~~~~   46 (274)
                      .+|.|||||..|.+.+..  | +    .+.+++++|..+.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            599999999999776542  2 2    1468999998754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.36  E-value=0.36  Score=33.65  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ..+.|.|||.|..|-..|..|+. |.+|..+++..
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            35789999999999999999984 99999999854

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.27  Score=37.02  Aligned_cols=31  Identities=35%  Similarity=0.617  Sum_probs=27.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPK   44 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~   44 (274)
                      ++|+|.|| |..|...+..|. +|++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            68999996 999999998885 69999999863

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.66  E-value=2  Score=33.17  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             EEecCEEEEccCCCCCCChhHHHHHHHccCCchhhhHHHHhhh----hCCCCeEEEEeCCCcc
Q 023975           99 RVVYDYLVIATGHKDPVPKTRTERLNQYQAGPTGVELAGEIAV----DFPEKKVTLVHKGSRL  157 (274)
Q Consensus        99 ~~~~~~li~a~G~~~~~~~~~~~~~~~~~~g~~~~e~a~~l~~----~~~~~~v~~~~~~~~~  157 (274)
                      ...||.+|+.-|                   ++|+-.|..|++    ...+.+|.++.+...+
T Consensus        30 ~~e~DViIVGgG-------------------PAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          30 AEEADVVIVGAG-------------------PAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             EEECSEEEECCS-------------------HHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cccCCEEEECCC-------------------HHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            567888886644                   445555555542    2368899999988765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.16  E-value=0.28  Score=33.20  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=26.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FS-ADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g-~~v~vie~~~   45 (274)
                      ...|+|+|+ |+.|+.++..++ .| .+|+++++++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccch
Confidence            457999995 999999998776 46 5888898765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.80  E-value=0.19  Score=35.66  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=64.2

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCceeeccceeeecCCc--------------ccccee--eec--
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPS--------------FGKRSV--INH--   70 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~---g~~v~vie~~~~~g~~~~~~~~~~~~~--------------~~~~~~--~~~--   70 (274)
                      .+++++|||||++|+.+|..|++   ..+|+++++.+.+.+....+...+...              ...+..  ...  
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   82 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence            45899999999999999999973   457999998776543221111100000              000000  000  


Q ss_pred             -------ccc--ccccEEEEE-eeEEEe--cCeEEeCCCeEEecCEEEEccCCCCCCCh
Q 023975           71 -------TDY--LVNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPK  117 (274)
Q Consensus        71 -------~~~--~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~li~a~G~~~~~~~  117 (274)
                             ...  ..++++... .+..++  .+.|.+++|+++.||.+|+|+|..|..+.
T Consensus        83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~  141 (213)
T d1m6ia1          83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVE  141 (213)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCT
T ss_pred             hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhh
Confidence                   001  124555433 344454  45899999999999999999998755443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.69  E-value=1.3  Score=32.48  Aligned_cols=93  Identities=14%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             ccCCchhhhHHHHhhhhCCCCeEEEEeCCCccCCc-------CC--------------------------------hhHH
Q 023975          126 YQAGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------IG--------------------------------PKAG  166 (274)
Q Consensus       126 ~~~g~~~~e~a~~l~~~~~~~~v~~~~~~~~~~~~-------~~--------------------------------~~~~  166 (274)
                      +++|.+|+.+|..|++ ..|.+++++++.+.+...       .+                                ..+.
T Consensus        39 IGaGpaGL~aA~~LA~-~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  117 (278)
T d1rp0a1          39 VGAGSAGLSAAYEISK-NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS  117 (278)
T ss_dssp             ECCSHHHHHHHHHHHT-STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHHHHHH
T ss_pred             ECCCHHHHHHHHHHHH-ccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecccHHHHH
Confidence            4568899999998862 469999999987653110       00                                0122


Q ss_pred             HHHHHHHHhCCcEEEcCceeeeeccCCCcee-EE--------------CCCCcEEeecEEEEcccCCC
Q 023975          167 DKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL--------------TSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       167 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~--------------~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ..+.+.++..++.+..++.+..+..+++.+. +.              ..++..+.++.+|.++|...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         118 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             HHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             HHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence            2334445567888888888877765554331 11              12335799999999999653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.28  E-value=0.25  Score=36.20  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             CCCCcEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           11 GKNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        11 ~~~~~v~IIGaG~-aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      -+.+.++|.||+- .|.++|..|. .|++|++.+++..
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3457788888754 6888898887 5999999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.15  E-value=0.25  Score=33.84  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=24.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhhc----CC----cEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQF----SA----DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~~----g~----~v~vie~~~   45 (274)
                      ..+|.|+|| |..|.++|+.|+.    |.    ...++|...
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~   65 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER   65 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc
Confidence            458999996 9999999999863    32    455666543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.02  E-value=0.57  Score=32.36  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~   45 (274)
                      ....+.|||.|..|...|..|+. |.+|..+++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            35799999999999999999975 99999999864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.96  E-value=0.13  Score=34.58  Aligned_cols=34  Identities=24%  Similarity=0.226  Sum_probs=24.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhhc----C----CcEEEEcCCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQF----S----ADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~~----g----~~v~vie~~~~   46 (274)
                      ..+|.|||| |..|.++|+.|..    +    ....++|....
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~   45 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM   45 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc
Confidence            459999996 9999999998852    2    14666665443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.41  Score=32.52  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=27.0

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ....|+|+|| |+.|+.+...++ .|++|+.+..++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            3458999996 999998887766 599999887654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.78  E-value=0.44  Score=35.75  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=28.4

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++|+|.|| |..|...+.+|. +|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            47999996 999999998885 7999999998654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.68  E-value=0.33  Score=33.02  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=26.9

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      ....|+|.|| |+.|+.+...++ .|++|+.+++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            3457888896 999998887776 599999888754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.67  E-value=0.53  Score=33.43  Aligned_cols=34  Identities=35%  Similarity=0.430  Sum_probs=27.8

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~-g~~v~vie~~~   45 (274)
                      ...+|++.|+|.+|+.+|..|. . -.++.++|+..
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            3479999999999999998885 3 35788899863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.61  E-value=0.79  Score=32.36  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=28.0

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh--------------------c-C-CcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ--------------------F-S-ADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~--------------------~-g-~~v~vie~~~~~   47 (274)
                      ..++|+|||+|-.++=||..|.                    + | .+|+++.|....
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            3579999999999999997653                    2 3 369999887654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.59  E-value=0.39  Score=36.92  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             HHHHHHhCCcEEEcCceeeeeccCCCc---eeEEC--CCC-----cEEeecEEEEcccCCCCchhh
Q 023975          169 TRDWLISKKVDVKLGERVNLDSVSEGS---DTYLT--STG-----DTINADCHFLCTGKPVGSDWL  224 (274)
Q Consensus       169 ~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~--~~g-----~~~~~d~vv~a~G~~~~~~~~  224 (274)
                      +..+.+..+++|+++++|+.|+.++++   +.++.  .++     +++.|+.||+|.|....+.+|
T Consensus       225 l~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LL  290 (367)
T d1n4wa1         225 LAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  290 (367)
T ss_dssp             HHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             hHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHH
Confidence            444444445999999999999876553   23332  233     368899999999975545544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.56  E-value=0.27  Score=35.10  Aligned_cols=88  Identities=8%  Similarity=-0.071  Sum_probs=57.8

Q ss_pred             HHHccCCchhhhHHHHhhhh-----CCCCeEEEEeCCCccCC--------c--CChhHHHHHHHHHHhCCcEEEcCceee
Q 023975          123 LNQYQAGPTGVELAGEIAVD-----FPEKKVTLVHKGSRLLE--------F--IGPKAGDKTRDWLISKKVDVKLGERVN  187 (274)
Q Consensus       123 ~~~~~~g~~~~e~a~~l~~~-----~~~~~v~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~gv~i~~~~~v~  187 (274)
                      +..+++|.+|+.+|..|..+     ..+.+|+++.+.+.+..        .  ....+.+.....+...|+++.++..+.
T Consensus         5 VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~   84 (239)
T d1lqta2           5 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVG   84 (239)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESCCBT
T ss_pred             EEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEEEec
Confidence            34567789999999888743     23468999999876432        1  123455666677788899999987653


Q ss_pred             eeccCCCceeEECCCCcEEeecEEEEcccCCC
Q 023975          188 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPV  219 (274)
Q Consensus       188 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~  219 (274)
                      ....        .+ .-...+|.+++|+|..+
T Consensus        85 ~~~~--------~~-~~~~~~~~v~~atGa~~  107 (239)
T d1lqta2          85 EHVQ--------PG-ELSERYDAVIYAVGAQS  107 (239)
T ss_dssp             TTBC--------HH-HHHHHSSEEEECCCCCE
T ss_pred             cccc--------hh-hhhccccceeeecCCCc
Confidence            2110        00 01235899999999754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.46  E-value=0.67  Score=35.43  Aligned_cols=86  Identities=20%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             hCCcEEEcCceeeeeccCCC--ce-eEE---CCCCc--EEeecEEEEcccCCCCchhhcccccccc--------------
Q 023975          175 SKKVDVKLGERVNLDSVSEG--SD-TYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTILKDS--------------  232 (274)
Q Consensus       175 ~~gv~i~~~~~v~~i~~~~~--~~-~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~--------------  232 (274)
                      ..|+++++++.|.+|..++.  .. .|+   ..+|+  .+.++.||+|.|....+.++...+..-.              
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~  309 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPS  309 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTT
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccccc
Confidence            45789999999999986543  22 343   44555  5789999999996443333322221100              


Q ss_pred             -------cCCC-CcEEeCCCccccCCCCeEEecccc
Q 023975          233 -------LDTH-GMLMVDENLRVKGQKNIFAIGDIT  260 (274)
Q Consensus       233 -------~~~~-g~~~v~~~~~~~~~~~i~~~Gd~~  260 (274)
                             .+.. ..=.||.++++-+.+|+|+++...
T Consensus       310 ~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv  345 (379)
T d2f5va1         310 LGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGN  345 (379)
T ss_dssp             TTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGG
T ss_pred             cceeecccCCCCCCccCCCCCcccccCCEEEeCCcc
Confidence                   0000 012577777775789999866644

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.46  E-value=0.96  Score=31.05  Aligned_cols=35  Identities=37%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~~-g~~v~vie~~~~   46 (274)
                      ..+.+.|||.|..|-..|..|+. |.+|..+++...
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            35799999999999999999974 999999998643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.41  E-value=0.38  Score=34.70  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             CCCCCcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           10 EGKNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        10 ~~~~~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +-+.+.++|.||+ -.|.++|..|. .|++|++.++++.
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            3456778888875 46888888886 5999999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.24  E-value=0.49  Score=34.74  Aligned_cols=35  Identities=20%  Similarity=0.162  Sum_probs=27.9

Q ss_pred             CCCcEEEEcC-C--hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGG-G--VAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGa-G--~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+.++|.|| |  =.|.++|..|. +|++|++.++++.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999996 3  36888888887 5999999998764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.14  E-value=0.6  Score=32.25  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CCCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ....|.|||.|..|-..|..|. .|.+|..+++...
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            3579999999999999999987 5999999997543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.91  E-value=0.44  Score=32.36  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~-~v~vie~~~   45 (274)
                      ...|+|+|+|..|+.++..++ .|. .|++.+.++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            457999999999999988876 475 566666544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=84.34  E-value=0.39  Score=36.62  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCc--EEEEcCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSAD--VTLIDPK   44 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~--v~vie~~   44 (274)
                      +++|+|.|| |..|...+..|. +|++  |+.+|+.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~   37 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKL   37 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCC
Confidence            578999994 999999999885 5776  5555543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.5  Score=37.39  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHhhc-CC-cEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQF-SA-DVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~~-g~-~v~vie~~~   45 (274)
                      +.+|+|||+|-.|..+|..|.+ |. +++|+|...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3589999999999999999975 76 799999654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.85  E-value=0.75  Score=32.35  Aligned_cols=68  Identities=22%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             CCcEEeecEEEEcccCCCCchh----hccccccc--ccCCCCcEEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023975          202 TGDTINADCHFLCTGKPVGSDW----LKDTILKD--SLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF  270 (274)
Q Consensus       202 ~g~~~~~d~vv~a~G~~~~~~~----~~~~~~~~--~~~~~g~~~v~~~~~~~~~~~i~~~Gd~~~~~~~~~~~~  270 (274)
                      ++..+.+|.+++|||..|....    ....++..  ...++|++.||++++| +.|+|||+|||++.|.+++.+.
T Consensus       129 ~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~~~T-~~~~I~A~GDv~~~~~l~~~a~  202 (220)
T d1lvla1         129 DGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQT-SMHNVWAIGDVAGEPMLAHRAM  202 (220)
T ss_dssp             TTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTTCBC-SSTTEEECGGGGCSSCCHHHHH
T ss_pred             cceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccchhhc-CCCCEEEEEEeCCcccchhhhh
Confidence            4568999999999998765321    11111110  0124688999999999 8999999999999887765443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.53  E-value=0.49  Score=36.76  Aligned_cols=29  Identities=41%  Similarity=0.626  Sum_probs=26.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEc
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLID   42 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie   42 (274)
                      ++|+|.|| |..|...+..|. +|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999996 999999998886 699999997

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.48  E-value=0.73  Score=33.03  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=27.0

Q ss_pred             CCcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.|+|.||+ -.|.++|..|. +|++|.++++.+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999974 47899998887 599999998754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.73  E-value=0.53  Score=34.37  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=26.0

Q ss_pred             CCcEEEEcC-Ch--HHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGG-GV--AGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~--aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.++|.|| |-  .|.++|..|+ .|++|++.+++.
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            478899985 54  5788888886 699999988764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.28  E-value=0.57  Score=31.50  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             CcEEEEcCChHHHHHHHH-h-h-----cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGGVAGSLVAKS-L-Q-----FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG~aGl~~A~~-L-~-----~g~~v~vie~~~~   46 (274)
                      .+|+|||||..|.+.+.. | +     ...++.|+|.++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~   40 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEE   40 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcH
Confidence            369999999887666643 2 2     1458999997653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.18  E-value=0.73  Score=34.91  Aligned_cols=33  Identities=27%  Similarity=0.293  Sum_probs=27.5

Q ss_pred             CcE-EEEcC-ChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRV-VVIGG-GVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v-~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      ++| +|.|| |..|..++.+|. +|++|+.+++...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            468 78896 899999998885 6999999998643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=82.07  E-value=1.1  Score=30.99  Aligned_cols=34  Identities=32%  Similarity=0.466  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+.+.|||.|-.|-..|..|+ .|.+|..+++...
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            579999999999999999997 4999999997544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.05  E-value=0.81  Score=32.97  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             CCCcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        12 ~~~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +.+.++|.||+ -.|.++|..|. .|++|++.++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34678888875 46888888886 699999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.87  E-value=0.59  Score=33.92  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=26.8

Q ss_pred             CCcEEEEcCCh---HHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGV---AGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~---aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      .+.++|.||+-   -|.++|..|. .|++|++.++++..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            46788888753   4678888886 69999999987653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.70  E-value=0.66  Score=33.68  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=27.5

Q ss_pred             CCCcEEEEcCC---hHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023975           12 KNKRVVVIGGG---VAGSLVAKSLQ-FSADVTLIDPKEYF   47 (274)
Q Consensus        12 ~~~~v~IIGaG---~aGl~~A~~L~-~g~~v~vie~~~~~   47 (274)
                      +.+.++|.||+   =.|.++|..|. .|++|++.++.+..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~   46 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL   46 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            34678888864   26899998886 59999998876543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.32  E-value=0.87  Score=34.31  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           14 KRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      +.++|.|| |..|...+..|. +|++|+.+++..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            56888896 999999998885 799999999864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.11  E-value=0.74  Score=34.88  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGa-G~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.|+|.|| |..|...+.+|. +|++|+.+++..
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            368999996 999999999986 699999998743

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.09  E-value=0.58  Score=34.81  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=27.9

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-----cC-------CcEEEEcCCCCc
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-----FS-------ADVTLIDPKEYF   47 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-----~g-------~~v~vie~~~~~   47 (274)
                      ..+|+|.|+|.+|+.+|..|.     .|       .++.++|+...+
T Consensus        25 d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv   71 (298)
T d1gq2a1          25 DHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLI   71 (298)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEEC
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcc
Confidence            468999999999999997764     13       379999987544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.98  E-value=0.92  Score=32.65  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             CCCcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           12 KNKRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        12 ~~~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      +.+.++|.||+ =.|.++|..|. .|++|++.++++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34667777864 47888898886 6999999998753

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.96  E-value=0.66  Score=33.23  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             CcEEEEcCC-hHHHHHHHHhh-cCCcEEEEcCCCC
Q 023975           14 KRVVVIGGG-VAGSLVAKSLQ-FSADVTLIDPKEY   46 (274)
Q Consensus        14 ~~v~IIGaG-~aGl~~A~~L~-~g~~v~vie~~~~   46 (274)
                      .+|+|.||+ =.|.+.|..|. +|++|+++++.+.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            479999975 46788888886 6999999988653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.28  E-value=0.92  Score=34.99  Aligned_cols=30  Identities=37%  Similarity=0.644  Sum_probs=26.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHh-h-cCCcEEEEcC
Q 023975           14 KRVVVIGG-GVAGSLVAKSL-Q-FSADVTLIDP   43 (274)
Q Consensus        14 ~~v~IIGa-G~aGl~~A~~L-~-~g~~v~vie~   43 (274)
                      ++|+|.|| |..|...+.+| + .|++|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            48999996 99999999887 3 5999999985

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=80.25  E-value=1.5  Score=29.98  Aligned_cols=37  Identities=16%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             CCCcEEEEcC-ChHHHHHHHHhh--cCCcEEEEcCCCCce
Q 023975           12 KNKRVVVIGG-GVAGSLVAKSLQ--FSADVTLIDPKEYFE   48 (274)
Q Consensus        12 ~~~~v~IIGa-G~aGl~~A~~L~--~g~~v~vie~~~~~g   48 (274)
                      ++.+|.|||| |.+|......|.  +..++..+-.....|
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG   43 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAG   43 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTT
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCC
Confidence            4579999996 999999999996  477777775555444

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.07  E-value=1.1  Score=30.27  Aligned_cols=33  Identities=33%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023975           13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE   45 (274)
Q Consensus        13 ~~~v~IIGaG~aGl~~A~~L~-~g~~v~vie~~~   45 (274)
                      .+.|+|||=|.-|-+=|..|+ .|.+|+|==|..
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~g   49 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCC
Confidence            579999999999999999998 699999876653