Citrus Sinensis ID: 023999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFNYLT
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEcccEEEEcccEEEEEccccccEEEEEEEccccccccccEEEEEccccccccccccccccccccccccEEEEcccccccccccccccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHEEEEEccccccccc
Coil and Loop (DISEMBL)
MQRLLGARSLCASFftkkqkhsaafsstsllfddtqLQFKESVGQFAreniapraanidqsnsfpqdVNLWKLMGnfnlhgitapqeygglglgylYHCIAMEEisrasgsvglsygahsnLCINQlvrhgspaqkdkylpklisgehvgalamsepnagsdvvgmkckadrvdggyiingnkmwctngpvAQTLVVYAKTDIKAGSKGITAFIIekgmpgfstaqkldklgmrgsdtCELVFEncfvpnenvlgqegkgcnsfgepkifnylt
Flexible Loop (DISEMBL)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIApraanidqsnsFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLgqegkgcnsfgepkifnylt
Low Complexity Region (SEG)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEygglglgylyHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFNYLT
Disordered region (IsUnstruct)
********SLCASFFTK*******F**TSLLFDDTQLQFKESVGQFAR**I***********SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGS****DKYLPKLISGEHVGALA*******SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFN***
Disordered Region (DISOPRED)
************************FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFNYLT
Disordered Region (DISEMBL)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFNYLT
Disordered Region (DISPRO)
*****G***LCASFFTK**KHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEPKIFNYLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9FS88	412	Isovaleryl-CoA dehydrogen	N/A	no	0.945	0.628	0.779	1e-121
Q9SWG0	409	Isovaleryl-CoA dehydrogen	yes	no	0.945	0.633	0.819	1e-113
Q9FS87	401	Isovaleryl-CoA dehydrogen	N/A	no	0.883	0.603	0.851	1e-113
Q5RBD5	423	Isovaleryl-CoA dehydrogen	yes	no	0.934	0.605	0.602	1e-86
P26440	423	Isovaleryl-CoA dehydrogen	yes	no	0.934	0.605	0.594	4e-86
Q9JHI5	424	Isovaleryl-CoA dehydrogen	yes	no	0.839	0.542	0.650	4e-86
P12007	424	Isovaleryl-CoA dehydrogen	yes	no	0.839	0.542	0.642	6e-85
Q3SZI8	426	Isovaleryl-CoA dehydrogen	yes	no	0.835	0.537	0.645	1e-84
P52042	379	Acyl-CoA dehydrogenase, s	yes	no	0.799	0.577	0.457	2e-49
P45867	379	Acyl-CoA dehydrogenase OS	yes	no	0.802	0.580	0.432	1e-48

>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 229/263 (87%), Gaps = 4/263 (1%)

Query: 1   MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAN 57
           M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  
Sbjct: 1   MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEK 59

Query: 58  IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117
           ID++NSFP+++NLWKLMG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG
Sbjct: 60  IDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYG 119

Query: 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY 177
             SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY
Sbjct: 120 VQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGY 179

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSD
Sbjct: 180 VLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSD 239

Query: 238 TCELVFENCFVPNENVLGQEGKG 260
           TCELVFENCFVP ENVLGQEGKG
Sbjct: 240 TCELVFENCFVPKENVLGQEGKG 262

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 4

>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/260 (81%), Positives = 235/260 (90%), Gaps = 1/260 (0%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID+
Sbjct: 1   MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDK 59

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +NSFP+DVNLWKLMG FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 60  TNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 119

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct: 120 NLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCE
Sbjct: 180 GNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCE 239

Query: 241 LVFENCFVPNENVLGQEGKG 260
           LVFENCFVP EN+L +EGKG
Sbjct: 240 LVFENCFVPEENILDKEGKG 259

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/242 (85%), Positives = 219/242 (90%)

Query: 19  QKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN 78
           QK   A  STSLLFDDTQ QFKESV QFA+ENIAP A  ID++N FPQDVNLWKLMG+FN
Sbjct: 10  QKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFN 69

Query: 79  LHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138
           L GIT P+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK K
Sbjct: 70  LLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQK 129

Query: 139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 198
           YLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVY
Sbjct: 130 YLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVY 189

Query: 199 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           AKTD+ A SKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLGQ G
Sbjct: 190 AKTDVTASSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQVG 249

Query: 259 KG 260
           KG
Sbjct: 250 KG 251

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1

 Score =  319 bits (818), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/269 (60%), Positives = 200/269 (74%), Gaps = 13/269 (4%)

Query: 3   RLLGARSLCASF--------FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAP 53
           RLLG R   AS+        F  ++ HS      ++    + Q Q +++V +F +E++AP
Sbjct: 6   RLLGWR--VASWRMRPPPAGFVSQRAHSLLPVDDAINGLSEEQRQLRQTVAKFLQEHLAP 63

Query: 54  RAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113
           +A  ID+SN F      WK +GN  + GITAP +YGG GLGYL H + MEEISRASG+VG
Sbjct: 64  KAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVG 123

Query: 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173
           LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++ 
Sbjct: 124 LSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK 183

Query: 174 DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKL 231
              YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKL
Sbjct: 184 GNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKL 243

Query: 232 GMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GMRGS+TCEL+FE+C VP  N+LG E KG
Sbjct: 244 GMRGSNTCELIFEDCKVPAANILGHENKG 272

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1

 Score =  318 bits (814), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 160/269 (59%), Positives = 200/269 (74%), Gaps = 13/269 (4%)

Query: 3   RLLGARSLCASF--------FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAP 53
           RLLG R   AS+        F  ++ HS      ++    + Q Q ++++ +F +E++AP
Sbjct: 6   RLLGWR--VASWRLRPPLAGFVSQRAHSLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAP 63

Query: 54  RAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113
           +A  ID+SN F      WK +GN  + GITAP +YGG GLGYL H + MEEISRASG+VG
Sbjct: 64  KAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVG 123

Query: 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173
           LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++ 
Sbjct: 124 LSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKK 183

Query: 174 DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKL 231
              YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKL
Sbjct: 184 GNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKL 243

Query: 232 GMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GMRGS+TCEL+FE+C +P  N+LG E KG
Sbjct: 244 GMRGSNTCELIFEDCKIPAANILGHENKG 272

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1

 Score =  318 bits (814), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 184/232 (79%), Gaps = 2/232 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q + ++ +F +EN+AP+A  IDQ+N F      WK +G+  + GITAP +YGG 
Sbjct: 43  LNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGS 102

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GA
Sbjct: 103 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGA 162

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 163 LAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRG 222

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  NVL QE KG 
Sbjct: 223 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKGV 274

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2

 Score =  313 bits (803), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 149/232 (64%), Positives = 182/232 (78%), Gaps = 2/232 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q + ++ +F +EN+AP+A  IDQSN F      WK +G+  + GITAP +YGG 
Sbjct: 43  LNEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGS 102

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GA
Sbjct: 103 GLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGA 162

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 163 LAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRG 222

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
           ITAFI+EK MPGFST++KLDKLGMRGS+TCELVFE+C VP  N+L QE KG 
Sbjct: 223 ITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKGV 274

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1

 Score =  312 bits (800), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/231 (64%), Positives = 184/231 (79%), Gaps = 2/231 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q Q +++V +F +E++AP+A  IDQSN F      WK +GN  + GITAP +YGG 
Sbjct: 45  LNEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 104

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG+L + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GA
Sbjct: 105 GLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGA 164

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+G
Sbjct: 165 LAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRG 224

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  N+LG  GKG
Sbjct: 225 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKG 275

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 2/221 (0%)

Query: 40  KESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC 99
           ++ V +FA   + P AA ID++  FP + N+ K MG + + GI   +EYGG G   L + 
Sbjct: 13  RQMVREFAENEVKPIAAEIDETERFPME-NVKK-MGQYGMMGIPFSKEYGGAGGDVLSYI 70

Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNA 159
           IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNA
Sbjct: 71  IAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNA 130

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 219
           G+D    +  A      Y+ING+K++ TNG VA T V++A TD   G+KGI+AFIIEKG 
Sbjct: 131 GTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKGF 190

Query: 220 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            GFS  +   KLG+R S T ELVFE+  VP EN++G+EGKG
Sbjct: 191 KGFSIGKVEQKLGIRASSTTELVFEDMIVPVENMIGKEGKG 231

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 1

>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 2/222 (0%)

Query: 39  FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH 98
            ++ V  FA+  +AP AA  D+   F  D  L++ M N  L GI  P++YGG+G  YL +
Sbjct: 12  IRKLVRDFAKHEVAPTAAERDEQERF--DRELFREMANLGLTGIPWPEDYGGIGSDYLAY 69

Query: 99  CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN 158
            IA+EE+S+   S G++  AH +LC   L   G+  QK +YL +L  GE +GA A++E  
Sbjct: 70  VIAVEELSKVCASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAG 129

Query: 159 AGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKG 218
           +GSD   MK  A+R+   Y++NG+K++ TNG VA   +V+A TD +   KG+TAFI+EK 
Sbjct: 130 SGSDAGSMKTTAERIGDDYVLNGSKVFITNGGVADIYIVFAVTDPEKKKKGVTAFIVEKD 189

Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             GF T +K  KLG+R S T E++FE+C VP    LG+EG+G
Sbjct: 190 FEGFFTGKKEKKLGIRSSPTTEIMFEDCVVPASKRLGEEGEG 231

Involved in the degradation of long-chain fatty acids.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255570831	406	acyl-CoA dehydrogenase, putative [Ricinu	0.941	0.635	0.869	1e-123
115461843	409	Os05g0125500 [Oryza sativa Japonica Grou	0.857	0.574	0.885	1e-122
413950112	477	hypothetical protein ZEAMMB73_407983 [Ze	0.861	0.494	0.851	1e-121
293332891	407	uncharacterized protein LOC100382372 [Ze	0.861	0.579	0.851	1e-121
357134886	411	PREDICTED: isovaleryl-CoA dehydrogenase	0.857	0.571	0.876	1e-121
25453062	412	RecName: Full=Isovaleryl-CoA dehydrogena	0.945	0.628	0.779	1e-120
242089359	410	hypothetical protein SORBIDRAFT_09g00226	0.948	0.634	0.788	1e-119
194700346	407	unknown [Zea mays] gi|195642912|gb|ACG40	0.861	0.579	0.843	1e-119
326498703	436	predicted protein [Hordeum vulgare subsp	0.835	0.525	0.868	1e-118
356539122	410	PREDICTED: isovaleryl-CoA dehydrogenase	0.945	0.631	0.842	1e-118

>gi|255570831|ref|XP_002526368.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223534327|gb|EEF36039.1| acyl-CoA dehydrogenase, putative [Ricinus communis]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/260 (86%), Positives = 244/260 (93%), Gaps = 2/260 (0%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQ++ G RSLC+S   K+Q   A+FS TSLLFDDTQLQFKESV QFA+ENIAP A+ IDQ
Sbjct: 1   MQKVFGLRSLCSSTL-KQQTRRASFS-TSLLFDDTQLQFKESVSQFAQENIAPHASKIDQ 58

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           +N+FP++VNLWKLMG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSV LSYGAHS
Sbjct: 59  TNNFPKEVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 118

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVR+GSPAQK KYLPKLISGEHVGALAMSEPNAGSDVV MKCKAD VDGGYI+N
Sbjct: 119 NLCINQLVRNGSPAQKQKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKADCVDGGYILN 178

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGPVAQTLV+YAKTD+KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 179 GNKMWCTNGPVAQTLVIYAKTDVKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 238

Query: 241 LVFENCFVPNENVLGQEGKG 260
           LVFENCFVP+ENVLGQEGKG
Sbjct: 239 LVFENCFVPDENVLGQEGKG 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461843|ref|NP_001054521.1| Os05g0125500 [Oryza sativa Japonica Group] gi|47900455|gb|AAT39231.1| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|57863927|gb|AAS90672.2| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|113578072|dbj|BAF16435.1| Os05g0125500 [Oryza sativa Japonica Group] gi|215694715|dbj|BAG89906.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630047|gb|EEE62179.1| hypothetical protein OsJ_16966 [Oryza sativa Japonica Group]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/235 (88%), Positives = 224/235 (95%)

Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S++SLLFDDTQ QFKESV +FA+E IAP AA ID SN FP+DVNLWKLMG+FNLHG+TAP
Sbjct: 25  SASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAP 84

Query: 86  QEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           +EYGG+GLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK KYLPKLIS
Sbjct: 85  EEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLIS 144

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GEHVGALAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQTLVVYAKTDI A
Sbjct: 145 GEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAA 204

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP+ENVLG+EGKG
Sbjct: 205 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKG 259

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413950112|gb|AFW82761.1| hypothetical protein ZEAMMB73_407983 [Zea mays]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 225/236 (95%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F+S+SLLFDDTQ QFKESV +FA+ENIAPRAA ID SN FP+DV+LW+LMG+FNLHG+TA
Sbjct: 92  FASSSLLFDDTQEQFKESVRKFAQENIAPRAAAIDASNHFPRDVDLWRLMGDFNLHGLTA 151

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCI+MEEI+RASG+VGLSYGAHSNLCINQLVRHGSP Q+ KYLPKLI
Sbjct: 152 PEEYGGMGLGYMYHCISMEEITRASGAVGLSYGAHSNLCINQLVRHGSPEQRLKYLPKLI 211

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 212 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 271

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKG
Sbjct: 272 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKG 327

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293332891|ref|NP_001168588.1| uncharacterized protein LOC100382372 [Zea mays] gi|223949393|gb|ACN28780.1| unknown [Zea mays]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/236 (85%), Positives = 225/236 (95%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F+S+SLLFDDTQ QFKESV +FA+ENIAPRAA ID SN FP+DV+LW+LMG+FNLHG+TA
Sbjct: 22  FASSSLLFDDTQEQFKESVRKFAQENIAPRAAAIDASNHFPRDVDLWRLMGDFNLHGLTA 81

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCI+MEEI+RASG+VGLSYGAHSNLCINQLVRHGSP Q+ KYLPKLI
Sbjct: 82  PEEYGGMGLGYMYHCISMEEITRASGAVGLSYGAHSNLCINQLVRHGSPEQRLKYLPKLI 141

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 142 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 201

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKG
Sbjct: 202 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKG 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134886|ref|XP_003569046.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Brachypodium distachyon]

 Score =  438 bits (1127), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/235 (87%), Positives = 225/235 (95%)

Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S +SLLFDDTQ QFKESV +FA+E+IAP AA ID SN FP++VNLWKLMG+FNLHG+T+P
Sbjct: 27  SCSSLLFDDTQEQFKESVHRFAQEHIAPHAAAIDASNYFPKEVNLWKLMGDFNLHGLTSP 86

Query: 86  QEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           +EYGGLGLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+GSPAQK+KYLPKLIS
Sbjct: 87  EEYGGLGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGSPAQKEKYLPKLIS 146

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GEHVGALAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQTLVVYAKTDI A
Sbjct: 147 GEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDITA 206

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP+ENVLG+EGKG
Sbjct: 207 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENVLGEEGKG 261

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25453062|sp|Q9FS88.1|IVD1_SOLTU RecName: Full=Isovaleryl-CoA dehydrogenase 1, mitochondrial; Short=IVD 1; Flags: Precursor gi|10129808|emb|CAC08233.1| isovaleryl-CoA dehydrogenase [Solanum tuberosum]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 229/263 (87%), Gaps = 4/263 (1%)

Query: 1   MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAN 57
           M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  
Sbjct: 1   MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEK 59

Query: 58  IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117
           ID++NSFP+++NLWKLMG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG
Sbjct: 60  IDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYG 119

Query: 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY 177
             SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY
Sbjct: 120 VQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGY 179

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSD
Sbjct: 180 VLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSD 239

Query: 238 TCELVFENCFVPNENVLGQEGKG 260
           TCELVFENCFVP ENVLGQEGKG
Sbjct: 240 TCELVFENCFVPKENVLGQEGKG 262

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242089359|ref|XP_002440512.1| hypothetical protein SORBIDRAFT_09g002260 [Sorghum bicolor] gi|241945797|gb|EES18942.1| hypothetical protein SORBIDRAFT_09g002260 [Sorghum bicolor]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/260 (78%), Positives = 232/260 (89%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           MQR L A    A+        +  F+S+SLLFDDTQ+QFKESV +FA+E IAP AA ID 
Sbjct: 1   MQRWLPALLRRAAPAVSGGGVARLFASSSLLFDDTQVQFKESVRKFAQEAIAPHAAAIDA 60

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           SN FP++V+LW+LMG+FNLHG+TAP+EYGG+GLGY+YHCIAMEEI+RASG+VGLSYGAHS
Sbjct: 61  SNHFPREVDLWRLMGDFNLHGLTAPEEYGGMGLGYMYHCIAMEEITRASGAVGLSYGAHS 120

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
           NLCINQLVRHG+P QK KYLPKLISGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++N
Sbjct: 121 NLCINQLVRHGNPEQKLKYLPKLISGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLN 180

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           GNKMWCTNGP AQTLVVYAKTD+ AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE
Sbjct: 181 GNKMWCTNGPSAQTLVVYAKTDLAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240

Query: 241 LVFENCFVPNENVLGQEGKG 260
           LVFENCFVP ENVLG+EGKG
Sbjct: 241 LVFENCFVPRENVLGEEGKG 260

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194700346|gb|ACF84257.1| unknown [Zea mays] gi|195642912|gb|ACG40924.1| isovaleryl-CoA dehydrogenase [Zea mays] gi|223947637|gb|ACN27902.1| unknown [Zea mays] gi|413942087|gb|AFW74736.1| isovaleryl-CoA dehydrogenase isoform 1 [Zea mays] gi|413942088|gb|AFW74737.1| isovaleryl-CoA dehydrogenase isoform 2 [Zea mays]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/236 (84%), Positives = 223/236 (94%)

Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
            +++SLLFDDTQ QFKESV +FA+E IAPRAA ID SN FP+DV+LW+LMG+FNLHG+TA
Sbjct: 22  LATSSLLFDDTQEQFKESVRKFAQEAIAPRAAAIDASNHFPRDVDLWRLMGDFNLHGLTA 81

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P+EYGG+GLGY+YHCIAMEEI+RASG+VGLSYGAHSNLCINQLVRHG+P QK KYLPKLI
Sbjct: 82  PEEYGGMGLGYMYHCIAMEEITRASGAVGLSYGAHSNLCINQLVRHGNPEQKLKYLPKLI 141

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           SGEH+GALAMSEPN+GSDVV MKCKA++VDGGY++NGNKMWCTNGP AQTLVVYAKTD+ 
Sbjct: 142 SGEHIGALAMSEPNSGSDVVSMKCKAEKVDGGYVLNGNKMWCTNGPSAQTLVVYAKTDLA 201

Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKG
Sbjct: 202 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPCENVLGEEGKG 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326498703|dbj|BAK02337.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/229 (86%), Positives = 217/229 (94%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
           FDDTQ QFKESV +FA+E+IAP AA ID SN  P++VNLWKLMG+FNLHG+T+P+EYGGL
Sbjct: 58  FDDTQEQFKESVHRFAQEHIAPHAAAIDASNHLPKEVNLWKLMGDFNLHGLTSPEEYGGL 117

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP QK+KYLPKLISG+H+GA
Sbjct: 118 GLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPTQKEKYLPKLISGDHIGA 177

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
           LAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQTLVVYAKTDI AGSKGIT
Sbjct: 178 LAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDITAGSKGIT 237

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG+EGKG
Sbjct: 238 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPRENVLGEEGKG 286

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539122|ref|XP_003538049.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/261 (84%), Positives = 240/261 (91%), Gaps = 2/261 (0%)

Query: 1   MQRLLGARSL-CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANID 59
           M R+  ARS+  A F +K + HSAAFS TSLLFD+TQ QFKESV QFA ENIAP A+ ID
Sbjct: 1   MHRINTARSIFSAVFRSKSRPHSAAFS-TSLLFDETQTQFKESVAQFATENIAPHASKID 59

Query: 60  QSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 119
           Q+N FP++VNLWK MG FNL GITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH
Sbjct: 60  QTNYFPKEVNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 119

Query: 120 SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYII 179
           SNLCINQLVR+GSPAQK+KYLPKLISG+HVGALAMSEPN+GSDVV MKCKADRVDGGY++
Sbjct: 120 SNLCINQLVRNGSPAQKEKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVL 179

Query: 180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTC 239
           NGNKMWCTNGPVAQTLVVYAKTDI AGSKGITAFIIEKGMPGF+TAQKLDKLGMRGSDTC
Sbjct: 180 NGNKMWCTNGPVAQTLVVYAKTDITAGSKGITAFIIEKGMPGFNTAQKLDKLGMRGSDTC 239

Query: 240 ELVFENCFVPNENVLGQEGKG 260
           ELVFENCFVP+EN+LG+EGKG
Sbjct: 240 ELVFENCFVPDENILGKEGKG 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2078302	409	IVD "isovaleryl-CoA-dehydrogen	0.945	0.633	0.780	2.7e-107
DICTYBASE|DDB_G0279827	415	ivdA "isovaleryl-CoA dehydroge	0.828	0.546	0.676	4.7e-80
UNIPROTKB|F1NF35	424	IVD "Uncharacterized protein"	0.937	0.606	0.573	3.1e-76
UNIPROTKB|J3KR54	426	IVD "Isovaleryl-CoA dehydrogen	0.897	0.577	0.582	1.2e-74
UNIPROTKB|P26440	423	IVD "Isovaleryl-CoA dehydrogen	0.897	0.581	0.582	1.2e-74
MGI|MGI:1929242	424	Ivd "isovaleryl coenzyme A deh	0.832	0.537	0.621	4e-74
UNIPROTKB|Q3SZI8	426	IVD "Isovaleryl-CoA dehydrogen	0.832	0.535	0.617	1.7e-73
UNIPROTKB|F1SSR4	426	IVD "Uncharacterized protein"	0.828	0.532	0.620	3.6e-73
RGD|2936	424	Ivd "isovaleryl-CoA dehydrogen	0.832	0.537	0.613	5.9e-73
UNIPROTKB|Q485C0	389	ivd "Isovaleryl-CoA dehydrogen	0.854	0.601	0.618	2e-72

TAIR|locus:2078302 IVD "isovaleryl-CoA-dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 203/260 (78%), Positives = 225/260 (86%)

Query:     1 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
             MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID+
Sbjct:     1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDK 59

Query:    61 SNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS 120
             +NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHS
Sbjct:    60 TNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHS 119

Query:   121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
             NLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+N
Sbjct:   120 NLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILN 179

Query:   181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
             GNKMWCTNGP A+TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCE
Sbjct:   180 GNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCE 239

Query:   241 LVFENCFVPNENVLGQEGKG 260
             LVFENCFVP EN+L +EGKG
Sbjct:   240 LVFENCFVPEENILDKEGKG 259

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006552 "leucine catabolic process" evidence=IMP;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0009083 "branched-chain amino acid catabolic process" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

DICTYBASE|DDB_G0279827 ivdA "isovaleryl-CoA dehydrogenase, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 155/229 (67%), Positives = 182/229 (79%)

Query:    32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
             FD+T LQ +ESV +FA+  +AP AA++D++N FP +  +WK MG+  L GITAP +    
Sbjct:    38 FDETLLQLQESVREFAQNELAPIAADVDKNNLFPNE--MWKKMGDLGLLGITAPSKYGGL 95

Query:    92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                   HCIAMEE+SRAS SV LSYGAHSNLCINQ+ R+ + AQKDKYLPKLISG+ VGA
Sbjct:    96 DLGYTAHCIAMEELSRASASVALSYGAHSNLCINQITRNANEAQKDKYLPKLISGDFVGA 155

Query:   152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
             LAMSEPNAGSDVV MK  A + +GG+++NGNKMW TNGP A  LVVYAKTDI AGSKGIT
Sbjct:   156 LAMSEPNAGSDVVSMKTNAKKTEGGWLLNGNKMWITNGPDANVLVVYAKTDINAGSKGIT 215

Query:   212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             AF+IEK M GFST QKLDKLGMRGS+TCELVFE+CFVP+ENVLG  G G
Sbjct:   216 AFLIEKEMKGFSTGQKLDKLGMRGSNTCELVFEDCFVPDENVLGTVGGG 264

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1NF35 IVD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 153/267 (57%), Positives = 190/267 (71%)

Query:     4 LLGARSLCASFFTKKQKHSAAFSS-TSLLFDDT-------QLQFKESVGQFARENIAPRA 55
             +LG  +LC++    +Q+ +        L  DDT       Q Q ++++ +F +E++AP+A
Sbjct:     7 VLGRAALCSALRGARQRQALLRRGFAGLAVDDTVNGLSDEQRQLRQTMTKFCQEHLAPKA 66

Query:    56 ANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLS 115
               IDQ N F      WK +G   + GITAP E          H + MEE+SRAS +VGLS
Sbjct:    67 QQIDQENEFKGMREFWKKLGELGVLGITAPVEYGGSALGYLDHVLVMEEVSRASAAVGLS 126

Query:   116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG 175
             YGAHSNLCINQLVR+GS AQK+KYLPKLISGEH+GALAMSEPNAGSDVV MK KAD+   
Sbjct:   127 YGAHSNLCINQLVRNGSEAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLKADKKGD 186

Query:   176 GYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGM 233
              Y++NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+EKGMPGFSTAQKLDKLGM
Sbjct:   187 YYVLNGNKFWITNGPDADVLIVYAKTDLNAVPASQGITAFIVEKGMPGFSTAQKLDKLGM 246

Query:   234 RGSDTCELVFENCFVPNENVLGQEGKG 260
             RGS+TCEL+FE+C +P EN+LG+  KG
Sbjct:   247 RGSNTCELIFEDCKIPAENILGKLSKG 273

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J3KR54 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 145/249 (58%), Positives = 184/249 (73%)

Query:    15 FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKL 73
             F  ++ HS      ++    + Q Q ++++ +F +E++AP+A  ID+SN F      WK 
Sbjct:    27 FVSQRAHSLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQ 86

Query:    74 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 133
             +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct:    87 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 146

Query:   134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193
             AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct:   147 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 206

Query:   194 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 251
              L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct:   207 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 266

Query:   252 NVLGQEGKG 260
             N+LG E KG
Sbjct:   267 NILGHENKG 275

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

UNIPROTKB|P26440 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 145/249 (58%), Positives = 184/249 (73%)

Query:    15 FTKKQKHSAAFSSTSLL-FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKL 73
             F  ++ HS      ++    + Q Q ++++ +F +E++AP+A  ID+SN F      WK 
Sbjct:    24 FVSQRAHSLLPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQ 83

Query:    74 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 133
             +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct:    84 LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 143

Query:   134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193
             AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct:   144 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 203

Query:   194 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 251
              L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct:   204 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 263

Query:   252 NVLGQEGKG 260
             N+LG E KG
Sbjct:   264 NILGHENKG 272

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006552 "leucine catabolic process" evidence=IEA;ISS

GO:0005759 "mitochondrial matrix" evidence=ISS;TAS

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=EXP;ISS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1929242 Ivd "isovaleryl coenzyme A dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 143/230 (62%), Positives = 176/230 (76%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q + ++ +F +EN+AP+A  IDQ+N F      WK +G+  + GITAP +     
Sbjct:    44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSG 103

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GAL
Sbjct:   104 LGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGAL 163

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   164 AMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGI 223

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             TAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  NVL QE KG
Sbjct:   224 TAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQESKG 273

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0006552 "leucine catabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q3SZI8 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 142/230 (61%), Positives = 176/230 (76%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q +++V +F +E++AP+A  IDQSN F      WK +GN  + GITAP +     
Sbjct:    46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSG 105

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GAL
Sbjct:   106 LGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGAL 165

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   166 AMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGI 225

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             TAFI+EKGMPGFST++KLDKLGMRGS+TCELVFE+C VP  N+LG  GKG
Sbjct:   226 TAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKG 275

GO:0006552 "leucine catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

UNIPROTKB|F1SSR4 IVD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 142/229 (62%), Positives = 176/229 (76%)

Query:    34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXX 93
             + Q Q ++++ +F +E++AP+A  IDQSN F      WK +GN  + GITAP +      
Sbjct:    47 EEQKQLRQTMTKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGTGL 106

Query:    94 XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
                 H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE++GALA
Sbjct:   107 GYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKLISGEYIGALA 166

Query:   154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGIT 211
             MSE NAGSDVV MK KAD+    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GIT
Sbjct:   167 MSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAKTDLAAVPPSRGIT 226

Query:   212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             AFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C VP  N+LGQ  KG
Sbjct:   227 AFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLSKG 275

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

RGD|2936 Ivd "isovaleryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 141/230 (61%), Positives = 174/230 (75%)

Query:    33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXX 92
             ++ Q Q + ++ +F +EN+AP+A  IDQSN F      WK +G+  + GITAP +     
Sbjct:    44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSG 103

Query:    93 XXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GAL
Sbjct:   104 LGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGAL 163

Query:   153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGI 210
             AMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GI
Sbjct:   164 AMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGI 223

Query:   211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             TAFI+EK MPGFST++KLDKLGMRGS+TCELVFE+C VP  N+L QE KG
Sbjct:   224 TAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQESKG 273

GO:0005739 "mitochondrion" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006551 "leucine metabolic process" evidence=TAS

GO:0006552 "leucine catabolic process" evidence=IEA;IDA

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0033539 "fatty acid beta-oxidation using acyl-CoA dehydrogenase" evidence=IC

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=TAS

UNIPROTKB|Q485C0 ivd "Isovaleryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 146/236 (61%), Positives = 171/236 (72%)

Query:    25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
             +SS +    +T    +E+V  FAR+ IAPRA  ID  N FP D  LWK  G+  L G+T 
Sbjct:     5 YSSLNYNLGETVDMIRETVNAFARDEIAPRAEQIDIDNEFPAD--LWKKFGDMGLLGMTV 62

Query:    85 PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
              +E          H +AM+EISRAS SVGLSYGA SNLC+NQL ++GS  QK KYLPKL 
Sbjct:    63 EEEYGGSGLGYLEHIVAMQEISRASASVGLSYGAMSNLCLNQLRKNGSHEQKLKYLPKLC 122

Query:   145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
             +GEHVGALAMSEPNAGSDVV MK +AD+    YI+NGNKMW TNGP A   V+YAKTD  
Sbjct:   123 TGEHVGALAMSEPNAGSDVVSMKLRADKKGDKYILNGNKMWITNGPDADVFVIYAKTDTS 182

Query:   205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             AGSKGITAFI+E+  PGFS  QKLDKLGMRGS+TCELVF++C VP EN+LG EGKG
Sbjct:   183 AGSKGITAFIVERDYPGFSRHQKLDKLGMRGSNTCELVFQDCEVPAENILGAEGKG 238

GO:0006552 "leucine catabolic process" evidence=ISS

GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SWG0	IVD_ARATH	1, ., 3, ., 8, ., 4	0.8192	0.9452	0.6332	yes	no
Q9FS87	IVD2_SOLTU	1, ., 3, ., 8, ., 4	0.8512	0.8832	0.6034	N/A	no
Q9FS88	IVD1_SOLTU	1, ., 3, ., 8, ., 4	0.7794	0.9452	0.6286	N/A	no
Q5RBD5	IVD_PONAB	1, ., 3, ., 8, ., 4	0.6022	0.9343	0.6052	yes	no
P26440	IVD_HUMAN	1, ., 3, ., 8, ., 4	0.5947	0.9343	0.6052	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.99	0.963
3rd Layer	1.3.99.10	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4337676	acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed (409 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4345605	methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed (572 aa)	•		•	•		•	•		0.984
	4325632	3-hydroxybutyryl-CoA dehydrogenase, putative, expressed (302 aa)	•			•		•	•		0.964
	4334698	electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed; The [...] (358 aa)	•		•	•			•		0.963
	4335102	electron transfer flavoprotein subunit beta, putative, expressed; The electron transfer flavopr [...] (253 aa)	•		•	•			•		0.953
	4352741	methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed (737 aa)	•			•		•	•		0.924
	4346520	acetyl-CoA acetyltransferase, cytosolic, putative, expressed (401 aa)	•					•	•		0.906
	4326136	acetyl-CoA acetyltransferase, cytosolic, putative, expressed (416 aa)	•					•	•		0.901
	4330184	enoyl-CoA hydratase/isomerase family protein, putative, expressed (300 aa)	•					•	•		0.865
	OsI_08314	enoyl-CoA hydratase/isomerase family protein, putative, expressed (294 aa)	•					•	•		0.841
	4331150	3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed (448 aa)	•					•	•		0.820

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	1e-180
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-147
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	2e-91
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-76
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	1e-66
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	6e-63
cd00567	327	cd00567, ACAD, Acyl-CoA dehydrogenase	5e-60
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	5e-57
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	1e-56
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	6e-48
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	4e-46
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	3e-43
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	4e-36
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	7e-34
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	3e-33
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	2e-30
PRK03354	380	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen	1e-25
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	8e-24
PTZ00456	622	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis	3e-22
PRK12341	381	PRK12341, PRK12341, putative acyl-CoA dehydrogenas	5e-22
pfam02770	52	pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase,	6e-19
cd01155	394	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil	5e-15
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	1e-14
PLN02876	822	PLN02876, PLN02876, acyl-CoA dehydrogenase	2e-14
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	7e-13
PTZ00457	520	PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis	2e-12
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	2e-12
TIGR03203	378	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase,	4e-12
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	6e-11
cd01154	418	cd01154, AidB, Proteins involved in DNA damage res	6e-11
cd01159	370	cd01159, NcnH, Naphthocyclinone hydroxylase	3e-10
PLN02636	686	PLN02636, PLN02636, acyl-coenzyme A oxidase	4e-10
cd01150	610	cd01150, AXO, Peroxisomal acyl-CoA oxidase	6e-08
PRK11561	538	PRK11561, PRK11561, isovaleryl CoA dehydrogenase;	6e-06
PTZ00460	646	PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis	2e-05
PLN02312	680	PLN02312, PLN02312, acyl-CoA oxidase	4e-05

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score =  502 bits (1293), Expect = e-180
 Identities = 214/245 (87%), Positives = 230/245 (93%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
            +      + SS+SLLFDDTQLQFKESV QFA+ENIAP AA ID +NSFP+DVNLWKLMG
Sbjct: 10  RRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMG 69

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQ 135
           +FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+G+PAQ
Sbjct: 70  DFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQ 129

Query: 136 KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTL 195
           K+KYLPKLISGEHVGALAMSEPN+GSDVV MKCKA+RVDGGY++NGNKMWCTNGPVAQTL
Sbjct: 130 KEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTL 189

Query: 196 VVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
           VVYAKTD+ AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENVLG
Sbjct: 190 VVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG 249

Query: 256 QEGKG 260
           QEGKG
Sbjct: 250 QEGKG 254

Length = 404

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score =  416 bits (1070), Expect = e-147
 Identities = 160/229 (69%), Positives = 185/229 (80%), Gaps = 2/229 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            DD     ++SV +FA++ IAP AA ID+ N FP   +LW+ MG   L GITAP+EYGG 
Sbjct: 2   LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFP--RDLWRKMGKLGLLGITAPEEYGGS 59

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           G+GYL H I MEEISRASGSV LSYGAHSNLCINQ+ R+GS AQK+KYLPKLISGEH+GA
Sbjct: 60  GMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGA 119

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
           LAMSEPNAGSDVV MK +A++    Y++NG+KMW TNGP A TLVVYAKTD  AG+ GIT
Sbjct: 120 LAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGIT 179

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AFI+EKGMPGFS AQKLDKLGMRGS+TCELVFE+C VP EN+LG E KG
Sbjct: 180 AFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKG 228

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  274 bits (703), Expect = 2e-91
 Identities = 103/227 (45%), Positives = 146/227 (64%), Gaps = 2/227 (0%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
           +     +++V  FA + IAP AA +D+   FP++V   K M    L GI  P+EYGG GL
Sbjct: 1   EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREV--IKEMAELGLMGIPIPEEYGGAGL 58

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
            +L + IA+EE+++   SV +    H++L  N +++ G+  QK KYLP L +GE +GA A
Sbjct: 59  DFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFA 118

Query: 154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           +SEP AGSD   +K  A +    Y++NG+KMW TNG  A   +V+A TD   G +GITAF
Sbjct: 119 LSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPSKGYRGITAF 178

Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           I+E+  PG S  +K DKLG+RGS T EL+FE+  VP EN+LG+EG+G
Sbjct: 179 IVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEG 225

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score =  236 bits (604), Expect = 3e-76
 Identities = 96/238 (40%), Positives = 138/238 (57%), Gaps = 11/238 (4%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQS---NSFPQDVNLWKLMGNFNLHGITAPQEY 88
             + Q   +  V +FA E +AP AA ID+      FP++  L + +    L G+T P+EY
Sbjct: 5   LSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRE--LLRALAEAGLLGLTIPEEY 62

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN---LCINQLVRHGSPAQKDKYLPKLIS 145
           GGLGL  L     +EE++RA     L+ G            ++R G+  QK +YLP+L S
Sbjct: 63  GGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLAS 122

Query: 146 GEHVGALAMSEPNAGSDVVGMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-I 203
           GE +GA A++EP AGSD+  ++   A R DG Y++NG K+W +N PVA  L+V A+TD  
Sbjct: 123 GELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA 182

Query: 204 KAGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
               KGI+ F++ K   PG S    L K+G+RGS T E+ F++  VP EN+LG+EG G
Sbjct: 183 PGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDG 240

Length = 393

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score =  212 bits (541), Expect = 1e-66
 Identities = 107/267 (40%), Positives = 158/267 (59%), Gaps = 15/267 (5%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDD------TQLQFKESVGQFARENIAPR 54
           M+R+L   SL     T     +A  +S S  F D           +E+V +F+RE +   
Sbjct: 1   MRRVL-QSSLGRRSATCGWTAAATMTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKH 59

Query: 55  AANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114
           A   D +  F  + +L+K +G+  + G+T P+  GG G+  +   I   E+S+      L
Sbjct: 60  AREDDINMHF--NRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCL 117

Query: 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV- 173
           +Y AHS L +N      SPAQ+ ++LPK+++GEHVGA+ MSEP AG+DV+GM+  A +  
Sbjct: 118 AYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS 177

Query: 174 DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM 233
           +G Y++NG+K+W TNG VA   ++YAK D K     ITAF++E+G  GF+   K+DK GM
Sbjct: 178 NGNYVLNGSKIWITNGTVADVFLIYAKVDGK-----ITAFVVERGTKGFTQGPKIDKCGM 232

Query: 234 RGSDTCELVFENCFVPNENVLGQEGKG 260
           R S  C+L FE+  VP EN+LG+EGKG
Sbjct: 233 RASHMCQLFFEDVVVPAENLLGEEGKG 259

Length = 410

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score =  201 bits (513), Expect = 6e-63
 Identities = 88/223 (39%), Positives = 144/223 (64%), Gaps = 4/223 (1%)

Query: 39  FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH 98
           F++ V +F  + +AP     +++   P++V  W+  G   L G+  P+EYGG+G   L  
Sbjct: 6   FRDVVRRFFAKEVAPFHHEWEKAGEVPREV--WRKAGEQGLLGVGFPEEYGGIGGDLLSA 63

Query: 99  CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN 158
            +  EE++RA GS G     H+++    + R GSP QK++ LP++++G+ +GA+AM+EP 
Sbjct: 64  AVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPG 122

Query: 159 AGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEK 217
           AGSD+ G++  A +    Y++NG+K + TNG +A  ++V A+T  +A G+ GI+ F++E+
Sbjct: 123 AGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVER 182

Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           G PGFS  +KL K+G +  DT EL F++C VP EN+LG+E KG
Sbjct: 183 GTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKG 225

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase

 Score =  192 bits (491), Expect = 5e-60
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 47/228 (20%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
           + Q + ++S  +FA E + P A    ++   P    L   +G                  
Sbjct: 1   EEQRELRDSAREFAAEELEPYARERRETPEEP--WELLAELGLL---------------- 42

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
                                       L    L+ +G+  QK++YLP L SGE + A A
Sbjct: 43  ----------------------------LGAALLLAYGTEEQKERYLPPLASGEAIAAFA 74

Query: 154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-IKAGSKGITA 212
           ++EP AGSD+ G++  A +   GY++NG K++ +NG  A   +V A+TD    G +GI+A
Sbjct: 75  LTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISA 134

Query: 213 FIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           F++    PG +  +  DK+GMRGS T ELVF++  VP +N+LG+EG G
Sbjct: 135 FLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGG 182

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC). Length = 327

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score =  187 bits (477), Expect = 5e-57
 Identities = 86/262 (32%), Positives = 135/262 (51%), Gaps = 16/262 (6%)

Query: 9   SLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVG----QFARENIAPRAANIDQSNSF 64
           S   + F         F   S+L ++ Q +    +     +F  E   P  A  DQ    
Sbjct: 1   SFALNMFLGDIVTKQVFPYPSVLTEE-QTEELNMLVGPVEKFFEEVNDP--AKNDQLEKI 57

Query: 65  PQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCI 124
           P+       +    L G+  P+EYGGLGL    +    E +        ++ GAH ++  
Sbjct: 58  PRKT--LTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMD-LGFSVTLGAHQSIGF 114

Query: 125 NQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGN 182
             ++  G+ AQK+KYLPKL SGE + A A++EP++GSD   ++  A   + G  Y++NG+
Sbjct: 115 KGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGS 174

Query: 183 KMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 238
           K+W TNG +A    V+AKT++K    +    ITAFI+E+   G +      K+G++GS+T
Sbjct: 175 KIWITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNT 234

Query: 239 CELVFENCFVPNENVLGQEGKG 260
            E+ FE+  +P ENVLG+ G G
Sbjct: 235 AEVYFEDVKIPVENVLGEVGDG 256

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score =  186 bits (473), Expect = 1e-56
 Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 11/239 (4%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
            LL ++ +   +++  +F +E +APR     +   F +   + + MG   L G T  + Y
Sbjct: 11  DLLTEEERA-IRDTAREFCQEELAPRVLEAYREEKFDRK--IIEEMGELGLLGAT-IKGY 66

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G  GL  + + +   E+ R            S+L +  +   GS  QK KYLPKL SGE 
Sbjct: 67  GCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGEL 126

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           +G   ++EPN GSD  GM+ +A +  GGY +NG+K W TN P+A   VV+A+ D     +
Sbjct: 127 IGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDETGKIR 186

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
           G   FI+E+GM G S  +   K  +R S T E+V +N FVP EN+L     G      P
Sbjct: 187 G---FILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLL----PGAEGLRGP 238

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score =  154 bits (393), Expect = 6e-48
 Identities = 51/115 (44%), Positives = 74/115 (64%), Gaps = 2/115 (1%)

Query: 33  DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG 92
            + Q   +++V +FA E +AP AA  D+   FP++  LW+ +G   L G+T P+EYGG G
Sbjct: 1   TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRE--LWRKLGELGLLGLTIPEEYGGAG 58

Query: 93  LGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           L YL + +  EE++RA  SVGL+   HS+L    ++R G+  QK+KYLPKL SGE
Sbjct: 59  LDYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLASGE 113

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score =  158 bits (400), Expect = 4e-46
 Identities = 91/235 (38%), Positives = 125/235 (53%), Gaps = 12/235 (5%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEYG 89
             + Q +F+E+  +FARE I P AA  D+S  +P  +    W+L G  N H    P++ G
Sbjct: 1   LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWEL-GLMNTH---IPEDCG 56

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEH 148
           GLGLG    C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     
Sbjct: 57  GLGLGTFDTCLITEEL--AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPL 114

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK---A 205
           + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D      
Sbjct: 115 MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCP 174

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            SK  T FI+E   PG    +K   +G R SDT  + FE+  VP ENVL  EG G
Sbjct: 175 ASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAG 229

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score =  150 bits (381), Expect = 3e-43
 Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
           + Q   +E    FA + +AP AA+ DQ   FP DV   +        GI    + GG GL
Sbjct: 3   EEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDV--LRKAAELGFGGIYIRDDVGGSGL 60

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
             L   I  E +S    S   +Y +  N+C   +   G+  Q++++LP L + E + +  
Sbjct: 61  SRLDASIIFEALSTGCVSTA-AYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYC 119

Query: 154 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           ++EP +GSD   ++ +A R    Y++NG+K + +    +   VV A+T    G KGI+ F
Sbjct: 120 LTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTG-GEGPKGISCF 178

Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           ++EKG PG S      K+G     T  ++FE+C VP EN LG EG+G
Sbjct: 179 VVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQG 225

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score =  132 bits (333), Expect = 4e-36
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 81  GITAPQEYGGLGLGYLYHCIAMEEISRASGSV-GLSYGAHSNLCINQLVRHGSPAQKDKY 139
               P+EYGG G   +   I  EE++ A   V     G    L    ++ +G+  QK ++
Sbjct: 51  APGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGID--LAGPTILAYGTDEQKRRF 108

Query: 140 LPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 199
           LP ++SGE +     SEP AGSD+ G++ +A R    +++NG K+W +    A    +  
Sbjct: 109 LPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLV 168

Query: 200 KTDIKAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           +TD +A   +GI+  +++   PG  T + +  +   G    E+  ++  VP+ N +G+  
Sbjct: 169 RTDPEAPKHRGISILLVDMDSPGV-TVRPIRSI-NGGEFFNEVFLDDVRVPDANRVGEVN 226

Query: 259 KG 260
            G
Sbjct: 227 DG 228

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score =  126 bits (318), Expect = 7e-34
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 10/222 (4%)

Query: 43  VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102
           V +   + +AP      +   FP   ++   +G+  + G T  + YG  GL      IA 
Sbjct: 40  VRECMEKEVAPIMTEYWEKAEFP--FHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIAT 96

Query: 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 162
            E++R   S       HS+L +  +   GS AQK KYLP L   + V   A++EP+ GSD
Sbjct: 97  AEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSD 156

Query: 163 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGF 222
              +   A +V+GG+I+NG K W  N   A  LV++A+      +  I  FI++KG PG 
Sbjct: 157 ASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARN---TTTNQINGFIVKKGAPGL 213

Query: 223 STAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
              +  +K+G+R     ++V ++ FVP+E+ L     G NSF
Sbjct: 214 KATKIENKIGLRMVQNGDIVLKDVFVPDEDRL----PGVNSF 251

Length = 412

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score =  124 bits (312), Expect = 3e-33
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI 100
           ++  +FARE IAP     D++     D  L + MG     G   P+E+GGLG+G L   +
Sbjct: 10  DTARRFARERIAPGFKERDKTRVL--DRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGV 67

Query: 101 AMEEISRASGSVGLSY-GAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNA 159
             E+I+RA  S+  SY    ++L    L +H  P     +L +LI+GE + A+A++EP  
Sbjct: 68  IHEQIARADLSM--SYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRG 125

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT-DIKAGSKGITAFIIEKG 218
           GSD   ++ +A+R    Y++NG K   +    A   VV+A+T     G++GI+AF++   
Sbjct: 126 GSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGARGISAFLVPMD 185

Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +PG  T  + D  G R      + FEN  VP +++LG EG+G
Sbjct: 186 LPGI-TRNRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQG 226

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score =  117 bits (295), Expect = 2e-30
 Identities = 70/241 (29%), Positives = 114/241 (47%), Gaps = 27/241 (11%)

Query: 41  ESVGQFARENIAPRAANIDQ--------SNSFPQDV--NLWKLMGNFNLHGITAPQEYGG 90
           E V + A   +AP  A+ D+            P      L           +  P+EYGG
Sbjct: 3   EEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEA-GWMALGVPEEYGG 61

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL    +    E  SR    +  + G         L+ HG+ AQ++K++P+L  GE  G
Sbjct: 62  QGLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTG 119

Query: 151 ALAMSEPNAGSDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTL----VVYAKT-DIK 204
            + ++EP+AGSD+  ++ KA  + DG + ING K + + G    +     +V A++    
Sbjct: 120 TMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAP 179

Query: 205 AGSKGITAFIIEK----GMPGFSTAQKLD-KLGMRGSDTCELVFENCFVPNENVLGQEGK 259
            G KG++ F++ K    G     T  +++ K+G+ GS TCELVF+N       ++G+EG 
Sbjct: 180 PGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236

Query: 260 G 260
           G
Sbjct: 237 G 237

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated

 Score =  103 bits (258), Expect = 1e-25
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 7/233 (3%)

Query: 31  LFDDTQLQFKESVGQF-ARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYG 89
           L D+ +L F   + +  A EN     A  D+ + +P+     K + +  +  +  P+E+G
Sbjct: 5   LNDEQEL-FVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHG 61

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           GL  G++       E+ R      + Y        N  +R G+  Q DK +    +G+ +
Sbjct: 62  GLDAGFVTLAAVWMELGRLGAPTYVLYQLPGG--FNTFLREGTQEQIDKIMAFRGTGKQM 119

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
              A++EP AGSDV  +K    R +G   +NG+K + T+      +VV A+         
Sbjct: 120 WNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARDGASPDKPV 179

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
            T + ++   PG     KL+KLG+R    CE+ F++  +  +++ G+EG G N
Sbjct: 180 YTEWFVDMSKPGI-KVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFN 231

Length = 380

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 98.9 bits (246), Expect = 8e-24
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 12/237 (5%)

Query: 30  LLFDDTQLQFKESVGQFARENIAP--RAANIDQSNSFPQDVNLWKLMGNFNLHGITA-PQ 86
           L F   +  F++ V  F ++N+    R   ++  +    ++  W  + N    G++  P+
Sbjct: 2   LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPK 61

Query: 87  EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG 146
           +YGG G   + H I  EE+  A     L++G   ++    +   G+  QK ++LP++ + 
Sbjct: 62  QYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANV 119

Query: 147 EHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG 206
           +       SEP +GSD+  +K KA++    +IING K W T    A  +    +TD  A 
Sbjct: 120 DDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAK 179

Query: 207 SK-GITAFIIEKGMPGFST--AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            + GI+  +++    G +    Q +D     G +  E+ F++  VP EN++G+E KG
Sbjct: 180 KQMGISFILVDMKSKGITVRPIQTIDG----GVEVNEVFFDDVEVPYENLVGEENKG 232

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional

 Score = 95.7 bits (238), Expect = 3e-22
 Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 25/185 (13%)

Query: 81  GITAPQEYGGLGLGYLYHCIAMEEISRASGSV----GLSYGAHSNLCINQLVRHGSPAQK 136
           GI+ P+EYGG  L      I  E ++ A+       GLS GA      N L+  GS  QK
Sbjct: 115 GISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGA-----ANTLMAWGSEEQK 169

Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQT- 194
           ++YL KL+SGE  G + ++EP  G+D+  +K KA+   DG Y I G K++ + G    T 
Sbjct: 170 EQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTE 229

Query: 195 ---LVVYAKT-DIKAGSKGITAFIIEKGMP----GFSTAQKLD------KLGMRGSDTCE 240
               +V A+  +    +KG++ F++ + +        TA+ +       K+G++GS TC+
Sbjct: 230 NIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQ 289

Query: 241 LVFEN 245
           L FEN
Sbjct: 290 LSFEN 294

Length = 622

>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional

 Score = 93.6 bits (233), Expect = 5e-22
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 59  DQSNSFPQDVNLWK-LMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSY 116
           D++ ++P++    + L  N  ++ G+  P+E+GG    Y+   + +EE+S+        +
Sbjct: 33  DENGTYPRE--FMRALADNGISMLGV--PEEFGGTPADYVTQMLVLEEVSKCGAPA---F 85

Query: 117 GAHSNLCINQLVRHGSPAQKDK-YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG 175
              +  CI+ + R GS  Q  K     L +G+   ALA++EP AGSD         R +G
Sbjct: 86  LITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNG 145

Query: 176 GYIINGNKMWCTNGPVAQTLVVYAK-TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
              +NG K + T       ++V A+    K   K  T + ++   PG      L K+G  
Sbjct: 146 KVYLNGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWH 204

Query: 235 GSDTCELVFENCFVPNENVLGQEGKG 260
              TCE+  +N  V   +++G+EG G
Sbjct: 205 MLSTCEVYLDNVEVEESDLVGEEGMG 230

Length = 381

>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain

 Score = 77.9 bits (193), Expect = 6e-19
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202
           A A++EP AGSD+  ++  A+R   G+++NG K W TN  +A   +V A+T 
Sbjct: 1   AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLARTG 52

Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold. Length = 52

>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2

 Score = 74.0 bits (182), Expect = 5e-15
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 37/156 (23%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L R+GS  QK ++L  L+ G+   A AM+EP+ A SD   ++C  +R    Y+ING K W
Sbjct: 104 LHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWW 163

Query: 186 CTNG--PVAQTLVVYAKTD--------------IKAGSKGITAFIIEKGMPGFSTAQKLD 229
            +    P  +  +V  +TD              +   + G+T   I + +  F       
Sbjct: 164 SSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVT---IIRPLSVF------- 213

Query: 230 KLGMRGSDT-----CELVFENCFVPNENVLGQEGKG 260
                G D       E+ F+N  VP  N++  EG+G
Sbjct: 214 -----GYDDAPHGHAEITFDNVRVPASNLILGEGRG 244

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 394

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 23/216 (10%)

Query: 46  FARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGY--LYHCIAM 102
            AR  IA  AA  D+    P ++V L +  G   L  +  P+EYGGLG     LY  +  
Sbjct: 7   AAR--IAEGAAERDRQRGLPYEEVALLRQSG---LGTLRVPKEYGGLGASLPDLYEVVR- 60

Query: 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE---PNA 159
            E++ A  ++  +  AH    +  L+  G    + ++  ++++G   G  A+SE      
Sbjct: 61  -ELAAADSNIAQALRAHFGF-VEALLLAGPEQFRKRWFGRVLNGWIFGN-AVSERGSVRP 117

Query: 160 GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM 219
           G+ +        R  GGY++NG K + T    +  + V A  +   G   +    +    
Sbjct: 118 GTFLT----ATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE--EGK--LVFAAVPTDR 169

Query: 220 PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
           PG +     D  G R + +  + F+N  V  + VL 
Sbjct: 170 PGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLP 205

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 8/141 (5%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L+R+G+  Q+ ++L  L+ G+     AM+EP  A SD   ++C   R    Y+ING K W
Sbjct: 529 LLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWW 588

Query: 186 CTNG---PVAQTLVVYAKTDIKAGS-KGITAFIIEKGMPGFSTAQKLDKLGMRGS--DTC 239
            T+G   P  + L+V  KTD  A   K  +  +++   PG    + L   G   +     
Sbjct: 589 -TSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHA 647

Query: 240 ELVFENCFVPNENVLGQEGKG 260
           E+ FEN  VP +N+L  EG+G
Sbjct: 648 EISFENVRVPAKNILLGEGRG 668

Length = 822

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 47/208 (22%)

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRH-GSPAQKDKYLPKL 143
           P+EYGG G     +   + +I+  S S  ++    ++L   +L+ H G+  QKD +LP+L
Sbjct: 128 PKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRL 187

Query: 144 ISGEHVGALAMSEPNAGSDV-----VGMKCKADRVDG----GYIINGNKMWCTNGPVAQT 194
             G  +   A++ P AGSD       G+ C+ +  +G    G  +  +K + T  PVA T
Sbjct: 188 ADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGE-FEGEEVLGLRLTWDKRYITLAPVA-T 245

Query: 195 LVVYA------------KTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM-------RG 235
           ++  A            K ++     GIT  +I    PG    ++ + LGM       RG
Sbjct: 246 VLGLAFKLRDPDGLLGDKKEL-----GITCALIPTDHPGVEIGRRHNPLGMAFMNGTTRG 300

Query: 236 SDTCELVFENCFVPNENVLG---QEGKG 260
            D         F+P + ++G     G+G
Sbjct: 301 KDV--------FIPLDWIIGGPDYAGRG 320

Length = 774

>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 51/154 (33%), Positives = 65/154 (42%), Gaps = 10/154 (6%)

Query: 78  NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD 137
           NL+G     EYGGLGLG+  H +  EE+     S  LS   HS  C   L   GS   K 
Sbjct: 64  NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKG 123

Query: 138 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTLV 196
           KYL  +  G  +   A  E   GSD+     KA    DG Y++ G K  C     A   +
Sbjct: 124 KYLTAMSDGTIMMGWATEEGC-GSDISMNTTKASLTDDGSYVLTGQKR-CEFAASATHFL 181

Query: 197 VYAKTDIKAGSKG-------ITAFIIEKGMPGFS 223
           V AKT  +  ++         + FI  K   G S
Sbjct: 182 VLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215

Length = 520

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 77/223 (34%)

Query: 85  PQEYGGLGL-GYLYHCIAMEEISR---ASGSVGL--SYGAHSNLCINQLVRHGSPAQKDK 138
           P+EYGGL    Y +  +  +  SR    + +V +  S G    L    L+ +G+  QKD 
Sbjct: 129 PKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGP-GEL----LLHYGTDEQKDH 183

Query: 139 YLPKLISGEHVGALAMSEPNAGSD-------------------VVGMKCKADRVDGGYII 179
           YLP+L  GE +   A++ P AGSD                   V+GM+           +
Sbjct: 184 YLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMR-----------L 232

Query: 180 NGNKMWCTNGPVAQTLVVYA------------KTDIKAGSKGITAFIIEKGMPGFSTAQK 227
             NK + T  P+A T++  A            K D+     GIT  +I    PG    ++
Sbjct: 233 TWNKRYITLAPIA-TVLGLAFKLYDPDGLLGDKEDL-----GITCALIPTDTPGVEIGRR 286

Query: 228 LDKLGMRGSDTCELVFENC-------FVPNENVLG-QE--GKG 260
              L         + F+N        F+P + ++G  +  G+G
Sbjct: 287 HFPLN--------VPFQNGPTRGKDVFIPLDYIIGGPKMAGQG 321

Length = 777

>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit

 Score = 65.0 bits (158), Expect = 4e-12
 Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 7/171 (4%)

Query: 70  LWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR 129
           +W  +    L G+   +  GG G G +   I ME + +A   V   Y A   +    L  
Sbjct: 42  VWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL--VLEPYLATVVIGGGFLRH 99

Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189
            GS AQK  +LP +I G    A A  E N+  D+  +   A +   G++I+G K    NG
Sbjct: 100 AGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159

Query: 190 PVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
             A TL+V A+T  K   +   GI  F++  G  G +      + G+  +D
Sbjct: 160 ETADTLIVTART--KGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAAD 208

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 378

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 39/226 (17%)

Query: 38  QFKESVGQFARENIAPRAANIDQ-SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY- 95
           +F     +  RE   P A  +D  S S      LW         GIT P+ YGG G+ Y 
Sbjct: 20  EFAPGAAERDRERRLPWA-ELDAFSQS-----GLW---------GITVPRAYGGAGVSYA 64

Query: 96  -LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALA 153
            L   IA+  IS A  S+G     H      +++R  GS  QK  +  ++++GE  G   
Sbjct: 65  TLAEVIAI--ISAADPSLGQIPQNH--FYALEVLRLTGSEEQKRFFFGEVLAGERFG--- 117

Query: 154 MSEPNAGSD-----VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
               NA S+     V+  + +  R   GY +NG K + T    A  + V A  D   G +
Sbjct: 118 ----NAFSERGTRNVLDFQTRLRRDGDGYRLNGRKFYSTGALFAHWIPVLALDD--DG-R 170

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
            + AF + +  PG +        G R + +  ++ ++  VP E+V+
Sbjct: 171 PVLAF-VPRDAPGLTVIDDWSGFGQRTTASGTVLLDDVRVPAEHVV 215

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALA---MSEPNAGSDVVGMKCKADRVDGG-YIINGN 182
           L ++G    K      L      G L    M+E   GSD+   +  A+R  GG Y +NG+
Sbjct: 123 LRKYGPEELKQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGH 182

Query: 183 KMWCTNGPVAQTLVVYAKT-DIKAGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGS 236
           K W  + P+A   +V A+     AG++G++ F++ + +      G+   +  DKLG R  
Sbjct: 183 K-WFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSV 241

Query: 237 DTCELVFENCFVPNENVLGQEGKG 260
            T E+ F++       ++G EGKG
Sbjct: 242 ATGEVEFDDAEA---YLIGDEGKG 262

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418

>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 24/207 (11%)

Query: 51  IAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110
           I  RA   +++   P +V   + +       +  P+ YGGL   +     A+  ++ A G
Sbjct: 10  IRERAPEAERARRLPDEV--VRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACG 67

Query: 111 SVG---LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK 167
           S          HS      L      AQ++ +      G+    L        +      
Sbjct: 68  SAAWVASIVATHSR----MLAAFPPEAQEEVW------GDGPDTLL-------AGSYAPG 110

Query: 168 CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK 227
            +A+RVDGGY ++G   + +    A  ++V A  +   G     AF++ +    +     
Sbjct: 111 GRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPRA--EYEIVDT 168

Query: 228 LDKLGMRGSDTCELVFENCFVPNENVL 254
              +G+RG+ +  +V ++ FVP    L
Sbjct: 169 WHVVGLRGTGSNTVVVDDVFVPEHRTL 195

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides. Length = 370

>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 28/186 (15%)

Query: 102 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGS 161
            E +     S+G+  G   +L    ++  G+   +DKY   + + ++ G  AM+E + GS
Sbjct: 127 TEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGS 186

Query: 162 DVVGMKCKA--DRVDGGYIIN-----GNKMWCTNGPV-AQTLVVYAKT-----DIKAGSK 208
           +V G++  A  D +   ++IN       K W  N  V  +   V+A+      D K  S 
Sbjct: 187 NVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSD 246

Query: 209 -GITAFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            G+ AFI+        + +PG        K+G+ G D   L F +  +P +N+L      
Sbjct: 247 MGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLL------ 300

Query: 261 CNSFGE 266
            N FG+
Sbjct: 301 -NRFGD 305

Length = 686

>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 102 MEEISRASGSVGLSYGA----HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           M  ++ + G   LS GA    H  L  N +   G+   +D +L    + E +G  A +E 
Sbjct: 84  MLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTEL 143

Query: 158 NAGSDVVGMKCKA--DRVDGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKG 209
             GS++ G++  A  D +   ++IN       K W  N G  A   VV+A+      + G
Sbjct: 144 GHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHG 203

Query: 210 ITAFIIE-------KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           + AFI+        + +PG +      K+G+ G D   L F N  +P EN+L
Sbjct: 204 LHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNGFLQFRNVRIPRENLL 255

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment. Length = 610

>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 19/139 (13%)

Query: 132 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWC 186
           +P   D+Y   L+ G     L     M+E   GSDV+    +A+R+  G Y + G+K W 
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHK-WF 216

Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
            + P +   +V A+        G++ F + + +P G   A +L    DKLG R + + E+
Sbjct: 217 FSVPQSDAHLVLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEV 271

Query: 242 VFENCFVPNENVLGQEGKG 260
            F++       +LG+EG+G
Sbjct: 272 EFQDA---IGWLLGEEGEG 287

Length = 538

>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRV 173
              H  + I      G+  Q + ++P L++ E VG  A +E   GSDV  ++  A  D+ 
Sbjct: 95  STVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQ 154

Query: 174 DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMP 220
              ++I+       K W    G +    +VYAK  +   +KG+  F++        K + 
Sbjct: 155 TNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQ 214

Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           G        K+G    D   L F++  +P +++L
Sbjct: 215 GVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLL 248

Length = 646

>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 23/175 (13%)

Query: 96  LYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
           L   I + + S A     +  G H  L    +   G+    DK+L         G  AM+
Sbjct: 138 LLEVIGIYDHSLA-----IKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMT 192

Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIIN-----GNKMWCTNGPVAQT---LVVYAKTDIKA 205
           E   GS+V G++     D     ++IN       K W   G  A      +V+++  I  
Sbjct: 193 ELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWI--GGAANHATHTIVFSQLHING 250

Query: 206 GSKGITAFIIE------KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
            ++G+ AFI +         P    A    K+G+ G D   + F+N  +P EN+L
Sbjct: 251 KNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLL 305

Length = 680

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG0141	421	consensus Isovaleryl-CoA dehydrogenase [Amino acid	100.0
KOG0139	398	consensus Short-chain acyl-CoA dehydrogenase [Lipi	100.0
KOG0140	408	consensus Medium-chain acyl-CoA dehydrogenase [Lip	100.0
PLN02519	404	isovaleryl-CoA dehydrogenase	100.0
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	100.0
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	100.0
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	100.0
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	100.0
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	100.0
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	100.0
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	100.0
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	100.0
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	100.0
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	100.0
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	100.0
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	100.0
PLN02526	412	acyl-coenzyme A oxidase	100.0
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	100.0
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	100.0
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	100.0
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	100.0
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	100.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	100.0
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	100.0
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	100.0
PLN02876	822	acyl-CoA dehydrogenase	100.0
KOG0137	634	consensus Very-long-chain acyl-CoA dehydrogenase [	100.0
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	100.0
KOG0138	432	consensus Glutaryl-CoA dehydrogenase [Amino acid t	100.0
PLN02636	686	acyl-coenzyme A oxidase	100.0
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.97
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.97
PLN02312	680	acyl-CoA oxidase	99.97
KOG1469	392	consensus Predicted acyl-CoA dehydrogenase [Genera	99.97
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.97
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	99.95
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.93
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.93
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	99.91
PLN02443	664	acyl-coenzyme A oxidase	99.89
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.8
KOG0135	661	consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t	99.73
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	99.54
TIGR02309	477	HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy	99.48
KOG0136	670	consensus Acyl-CoA oxidase [Lipid transport and me	99.42
PF11794	264	HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter	98.63
COG2368	493	Aromatic ring hydroxylase [Secondary metabolites b	98.42
TIGR02310	519	HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy	98.36
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	85.12

>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=100.00  E-value=4.5e-48  Score=325.24  Aligned_cols=239  Identities=66%  Similarity=1.035  Sum_probs=230.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      +..+++|+. .++++++.|+++.+.|.+.++|+.+.++..+++|+++.++|++|+..|++|||.|+++.+-+.++|++++
T Consensus        38 ~~g~~~e~~-~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sr  116 (421)
T KOG0141|consen   38 MFGLSDEQD-QLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISR  116 (421)
T ss_pred             hcCCCHHHH-HHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHh
Confidence            456899999 9999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +....+..+..|+.++..-|.+.|+++|+++|+|++.+|+-++++|||||.+|||+..+++.|+++++.|+|||.|.|+|
T Consensus       117 a~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~wit  196 (421)
T KOG0141|consen  117 ASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWIT  196 (421)
T ss_pred             hcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          188 NGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      |+++||.++|.|+++..  +.++++++|+|+...||++..+..+++||++++++++.|+|++||+++++|.++.|+-++|
T Consensus       197 NG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlM  276 (421)
T KOG0141|consen  197 NGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLM  276 (421)
T ss_pred             cCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEe
Confidence            99999999999998765  5678999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q 023999          266 EP  267 (274)
Q Consensus       266 ~~  267 (274)
                      .-
T Consensus       277 sg  278 (421)
T KOG0141|consen  277 SG  278 (421)
T ss_pred             cC
Confidence            75

>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-47  Score=325.89  Aligned_cols=236  Identities=40%  Similarity=0.709  Sum_probs=225.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      -..+++.++ ++.+++++|+.+.+.|.+++.|++..+|.  .+++.+.++|++++.+||+|||.|.++...+.++|++++
T Consensus        34 l~~l~E~e~-~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk  110 (398)
T KOG0139|consen   34 LQILSETEQ-MLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISK  110 (398)
T ss_pred             hhhcCcHHH-HHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhc
Confidence            346899999 99999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      .|++++..+..|..+...++..+|+++||++|+|. +.|+.++++|+|||..|||...+.|+|++++|.|+|||.|.|+|
T Consensus       111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt  189 (398)
T KOG0139|consen  111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT  189 (398)
T ss_pred             cCccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence            99999998888887888999999999999977776 57888999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      |+..|++++|+|..++..+.+++++|+||++.||+++..+.+++|||++.++.++|+||+||++++||+.|.|+++.++.
T Consensus       190 N~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~  269 (398)
T KOG0139|consen  190 NAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEV  269 (398)
T ss_pred             CCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHh
Confidence            99999999999999877788999999999999999999999999999999999999999999999999999999998875

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-44  Score=303.29  Aligned_cols=236  Identities=35%  Similarity=0.586  Sum_probs=227.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      +..++++|. ++++.+++|.++++.|.+.+.|+.+.+|-  +++++..++|+....+|+++||.|++..+.+.+.|+|++
T Consensus        25 sf~L~e~qk-e~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay  101 (408)
T KOG0140|consen   25 SFGLTEDQK-EFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY  101 (408)
T ss_pred             ccCcchHHH-HHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence            678999999 99999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      .|.++...+..|. ++.+++..+|+++||++||++++....+++.++|||++|||..++.|+|++.+|.|+|||.|.|+|
T Consensus       102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt  180 (408)
T KOG0140|consen  102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT  180 (408)
T ss_pred             cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence            9999988888888 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCC---CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          188 NGPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~---~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      |+.+++|++|++|.+++   ++.+.++.|+|+.+.||++.......||.+.+++-.++|+||+||.+++||.+|.|++++
T Consensus       181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA  260 (408)
T KOG0140|consen  181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA  260 (408)
T ss_pred             cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence            99999999999999886   456789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 023999          265 GEP  267 (274)
Q Consensus       265 ~~~  267 (274)
                      +..
T Consensus       261 m~~  263 (408)
T KOG0140|consen  261 MGG  263 (408)
T ss_pred             hhh
Confidence            876

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=7.5e-42  Score=313.40  Aligned_cols=238  Identities=87%  Similarity=1.375  Sum_probs=216.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      .+++.+++++. ++++.+++|+.+.+.+.+.+.|+.+.+|...++|+.|++.||+++.+|+++||.|+++.+.+.++|++
T Consensus        21 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~l   99 (404)
T PLN02519         21 SSSLLFDDTQL-QFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEI   99 (404)
T ss_pred             CCCCCCCHHHH-HHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHH
Confidence            45667899998 99999999999999998888888888887223799999999999999999999999999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeec
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (274)
                      +++++++++.+..|.......+..+++++||++|++.+++|+.++++++|||.+|+|...+.+++++++|||+|||+|.|
T Consensus       100 a~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~  179 (404)
T PLN02519        100 SRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMW  179 (404)
T ss_pred             hhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEe
Confidence            99999998877777545566788899999999999999999999999999999999998999999999999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       186 vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      ++++..||+++|.++.+++++..++.+|+||++.|||++.++|+++|+++++++++.|+||+||+++++|.+++|+...
T Consensus       180 vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~  258 (404)
T PLN02519        180 CTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVM  258 (404)
T ss_pred             ecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHH
Confidence            9999999999999997654445578899999999999998999999999999999999999999999999998888654

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=100.00  E-value=9.3e-42  Score=310.01  Aligned_cols=233  Identities=69%  Similarity=1.108  Sum_probs=213.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (274)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~  110 (274)
                      ++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.|++.||+++.+|++|||.|+++.+.+.++|+++++++
T Consensus         2 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~   78 (376)
T cd01156           2 LDDEIE-MLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASG   78 (376)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccch
Confidence            567888 99999999999999988877888888998  999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~  190 (274)
                      ++++.+..|...+...|..+++++|+++|++++++|+++++++++||.+|+|...+.+++++++|||+|||+|.|++++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~  158 (376)
T cd01156          79 SVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGP  158 (376)
T ss_pred             hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCC
Confidence            99887766654555678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       191 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      .||+++|+++.+++++..++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++||..+.|+.++.+
T Consensus       159 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~  234 (376)
T cd01156         159 DADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMS  234 (376)
T ss_pred             cCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHH
Confidence            9999999998765444457889999999999999888999999999999999999999999999999988876543

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=100.00  E-value=5.1e-41  Score=305.41  Aligned_cols=233  Identities=38%  Similarity=0.575  Sum_probs=208.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (274)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~  110 (274)
                      ++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++|+.|+
T Consensus         1 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~   77 (378)
T cd01157           1 LTEQQK-EFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCT   77 (378)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhh
Confidence            467888 99999999999999988888888888998  999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~  190 (274)
                      ++++.+..+. .+...+..+++++||++|++++++|++++++++|||..|+|...+.+++++++|||+|||+|.|++++.
T Consensus        78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~  156 (378)
T cd01157          78 GVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG  156 (378)
T ss_pred             HHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCc
Confidence            8776554443 445566778999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCC---CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          191 VAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       191 ~a~~~lv~a~~~~~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      .||+++|+++.+++.+   .+++.+|+||++.|||++.+.|.++|+++++++++.|+||+||++++++.+++|++++.+.
T Consensus       157 ~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~  236 (378)
T cd01157         157 KANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGA  236 (378)
T ss_pred             cCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHH
Confidence            9999999999754321   3467899999999999998899999999999999999999999999999999888765443

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.2e-40  Score=303.24  Aligned_cols=231  Identities=25%  Similarity=0.447  Sum_probs=205.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhc-CcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           29 SLLFDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ..+|++|+ ++++.+++|+.+++ .+...+.++.+.+|.  ++|+.|++.||+++.+|++|||.|.++.+++.+++++|+
T Consensus         3 ~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~   79 (380)
T PRK03354          3 FNLNDEQE-LFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGR   79 (380)
T ss_pred             CCCCHHHH-HHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence            36899999 99999999999886 455566788888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +++++++.+..+.  ....+..+++++|+++|++++++|+.+.++++|||..|+|...+.|++++++|||+|||+|.|++
T Consensus        80 ~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis  157 (380)
T PRK03354         80 LGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFIT  157 (380)
T ss_pred             cCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEc
Confidence            9998776554432  34567888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      ++..||+++|+++.+++++...+.+|+||++.+||++ .+|+++|+++++++++.|+||+||+++++|.+++|+.+..
T Consensus       158 ~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~  234 (380)
T PRK03354        158 SSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVK  234 (380)
T ss_pred             CCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHH
Confidence            9999999999999754333446778999999999998 4799999999999999999999999999999998886554

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=100.00  E-value=1.3e-40  Score=302.59  Aligned_cols=231  Identities=31%  Similarity=0.556  Sum_probs=211.9

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (274)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~  110 (274)
                      ++++++ ++++.+++|+.+.+.+.+.+.|..+.+|.  ++|+.++++||+++.+|+++||.|.++.+.+.++|+++++++
T Consensus         1 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~   77 (375)
T cd01162           1 LNEEQR-AIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCV   77 (375)
T ss_pred             CCHHHH-HHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhch
Confidence            467888 99999999999999998878888888998  999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~  190 (274)
                      ++++.+..|. .+...+..+++++|+++|++++++|+.+++++++||.+|+|...+.+++++++|||+|||+|+||+++.
T Consensus        78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~  156 (375)
T cd01162          78 STAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAG  156 (375)
T ss_pred             hHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCC
Confidence            9887666665 566678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       191 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      .||+++|+++.+++ +..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.+++|+++..+
T Consensus       157 ~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~  231 (375)
T cd01162         157 DSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMA  231 (375)
T ss_pred             CCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHH
Confidence            99999999987542 3456789999999999999999999999999999999999999999999999998876543

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=100.00  E-value=2.8e-40  Score=301.43  Aligned_cols=227  Identities=35%  Similarity=0.621  Sum_probs=206.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+++.+.+...+.++.+.+|.  ++|+++.+.||+++ +|+++||.|+++.+...++|++++.
T Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~   86 (386)
T cd01151          11 DLLTEEER-AIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERV   86 (386)
T ss_pred             cCCCHHHH-HHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhh
Confidence            45789999 99999999999999988877777778898  99999999999999 9999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      +.++++.+..|...+...+..+++++|+++|++++++|++++++++|||++|+|+..+.++|++++|||+|||+|.|+|+
T Consensus        87 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~  166 (386)
T cd01151          87 DSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITN  166 (386)
T ss_pred             ChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecC
Confidence            99987766665545556788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS  263 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~  263 (274)
                      +..||+++|+++.+++   .++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++. ++|+..
T Consensus       167 ~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~  237 (386)
T cd01151         167 SPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRG  237 (386)
T ss_pred             CCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHH
Confidence            9999999999997642   3677899999999999989999999999999999999999999999986 456543

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=1.8e-40  Score=301.20  Aligned_cols=229  Identities=38%  Similarity=0.745  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999           34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG  113 (274)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~  113 (274)
                      +|+ ++++.+++|+.+.+.+.+.+.|+++.+|.  ++|+.|+++||+++.+|++|||.|.++.+.+.++|++++++.+ +
T Consensus         2 ~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~   77 (372)
T cd01160           2 EHD-AFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-G   77 (372)
T ss_pred             hHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-H
Confidence            567 99999999999999888878888888999  9999999999999999999999999999999999999997655 4


Q ss_pred             hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (274)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~  193 (274)
                      +.+..|...+...+..+++++|+++|++++++|+.++++++|||.+|+|...+.++++++++||+|||+|.|++|+..||
T Consensus        78 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad  157 (372)
T cd01160          78 PGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLAD  157 (372)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccC
Confidence            55555554556678889999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +++|.++.+++. +..++.+|+||++.|||++.++|+++|+++++++++.|+||+||++++||.+++|+..+.+
T Consensus       158 ~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~  231 (372)
T cd01160         158 VVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQ  231 (372)
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHH
Confidence            999999876542 2456889999999999999888999999999999999999999999999999988765544

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=100.00  E-value=2.3e-40  Score=300.58  Aligned_cols=231  Identities=33%  Similarity=0.550  Sum_probs=208.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999           31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (274)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~  110 (274)
                      ++++++ ++++.+++|+.+.+.|...+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++.++
T Consensus         1 ~t~~~~-~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~   77 (372)
T TIGR03207         1 LNEDLQ-ALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADL   77 (372)
T ss_pred             CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCc
Confidence            467888 99999999999999998877888888998  999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP  190 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~  190 (274)
                      ++++....+. .+...+..+++++|+++|++++++|+.+++++++||.+|+|...+.+++++++|||+|||+|.|||++.
T Consensus        78 s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~  156 (372)
T TIGR03207        78 SMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAAD  156 (372)
T ss_pred             cHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCC
Confidence            9876544333 555678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       191 ~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      .||+++|+++.+++ .+..++.+|+||+++|||++ .+|+++|++++++++++|+||+||+++++|.++.|+..+.+
T Consensus       157 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~  232 (372)
T TIGR03207       157 QADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQ  232 (372)
T ss_pred             cCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHH
Confidence            99999999997542 23346789999999999997 57999999999999999999999999999999988876554

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-40  Score=302.68  Aligned_cols=231  Identities=41%  Similarity=0.725  Sum_probs=209.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      .+.++++++ ++++.+++|+.+.+.+.+.+.|..+.+|.  ++|+.+++.||+++.+|++|||.|+++.+.+.++|++++
T Consensus        34 ~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~  110 (410)
T PTZ00461         34 LYNPTPEHA-ALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSK  110 (410)
T ss_pred             cCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHh
Confidence            456888999 99999999999999998888888888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCC-eEEEeeEeecc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWC  186 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~-g~~l~G~k~~v  186 (274)
                      .++++++.+..|.......+..+++++||++|++.+++|+++++++++||.+|+|...+.|++++++| +|+|||+|.||
T Consensus       111 ~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~v  190 (410)
T PTZ00461        111 YDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWI  190 (410)
T ss_pred             hCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeE
Confidence            99887766665543445567788999999999999999999999999999999999999999999765 69999999999


Q ss_pred             cCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       187 s~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +|+..||+++|.++.++     ++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+++|+.+..+
T Consensus       191 s~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~  265 (410)
T PTZ00461        191 TNGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMR  265 (410)
T ss_pred             CCCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHH
Confidence            99999999999998642     4779999999999999999999999999999999999999999999999988765533

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=100.00  E-value=6.6e-40  Score=297.47  Aligned_cols=230  Identities=45%  Similarity=0.782  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999           34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG  113 (274)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~  113 (274)
                      ++. ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.|++.||+++.+|+++||.|.++.+.+.++|+++++|++++
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~   78 (373)
T cd01158           2 EHQ-MIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVA   78 (373)
T ss_pred             hHH-HHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence            566 99999999999988888878888888998  999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (274)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~  193 (274)
                      +.+..|...+...+..+++++|+++|++.+++|+.+++++++||.+|++...+.+++++++|||+|||+|.|++++..||
T Consensus        79 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad  158 (373)
T cd01158          79 VIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD  158 (373)
T ss_pred             HHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence            88877764556678889999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             EEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          194 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       194 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +++|.++.+++++..++.+|+||+++|||++.++|+++|+++++++++.|+||+||++++++.++.|+....+
T Consensus       159 ~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~  231 (373)
T cd01158         159 FYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQ  231 (373)
T ss_pred             EEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHH
Confidence            9999998755444456889999999999999999999999999999999999999999999999988876543

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-39  Score=296.87  Aligned_cols=230  Identities=23%  Similarity=0.415  Sum_probs=203.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcC-cchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ..++++++ ++++.++.|+.+.+. +...+.|+.+.+|.  ++|+.+++.||+++.+|++|||.|.++.+++.++|++++
T Consensus         3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~   79 (381)
T PRK12341          3 FSLTEEQE-LLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK   79 (381)
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhh
Confidence            35788888 999999999999886 45667788888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHH-hcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~-~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (274)
                      .+.+. +.+ .+. .+...+..+|+++||++|++++ .+|+.+.++++|||..|+|...+++++++++|||+|||+|.|+
T Consensus        80 ~~~~~-~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~i  156 (381)
T PRK12341         80 CGAPA-FLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFI  156 (381)
T ss_pred             cChhH-HHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEE
Confidence            99873 333 232 4555678899999999999998 4999889999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          187 TNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       187 s~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      ||+..||+++|.++.+++. +..++.+|+||+++|||++ .+|+++|+++++++.++|+||+||++++||.+++|+..+.
T Consensus       157 s~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~  235 (381)
T PRK12341        157 TGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVM  235 (381)
T ss_pred             cCCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHH
Confidence            9999999999999975432 2346789999999999999 6799999999999999999999999999999998876544

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=100.00  E-value=3.7e-39  Score=296.05  Aligned_cols=231  Identities=34%  Similarity=0.597  Sum_probs=204.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~  109 (274)
                      .++++++ ++++.+++|+++.+.+.  ..++.+.+|.  ++|+.+++.||+++.+|+++||.|+++.+++.++|++++ +
T Consensus        26 ~~~~~~~-~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~   99 (409)
T cd01161          26 EQTEELN-MLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-D   99 (409)
T ss_pred             cCCHHHH-HHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-C
Confidence            5678888 99999999999998875  3466677888  999999999999999999999999999999999999999 9


Q ss_pred             CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEeeccc
Q 023999          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCT  187 (274)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~~vs  187 (274)
                      +++++.+..|...+...+..+++++|+++|++++++|+.++++++|||++|+|...+.++++++  +++|+|||+|.|++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs  179 (409)
T cd01161         100 LGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWIT  179 (409)
T ss_pred             hHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeec
Confidence            8887777666534445577899999999999999999999999999999999999899999984  45799999999999


Q ss_pred             CCCCCCEEEEEEEeCC--CCC--CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999          188 NGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS  263 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~--~~~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~  263 (274)
                      |+..||+++|.++.++  .++  .+++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+++|+.+
T Consensus       180 ~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~  259 (409)
T cd01161         180 NGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKV  259 (409)
T ss_pred             CCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHH
Confidence            9999999999998752  112  246789999999999999899999999999999999999999999999999988876


Q ss_pred             ccC
Q 023999          264 FGE  266 (274)
Q Consensus       264 ~~~  266 (274)
                      +++
T Consensus       260 ~~~  262 (409)
T cd01161         260 AMN  262 (409)
T ss_pred             HHH
Confidence            543

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=100.00  E-value=4.1e-39  Score=292.74  Aligned_cols=230  Identities=23%  Similarity=0.340  Sum_probs=198.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchh--chhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      .++++|+ ++++.+++|+.+.+.+...  ..+..+.+|.  ++|+++.++||+++.+|+++||.|+++.+.+.++|++++
T Consensus         3 ~~~~eq~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~   79 (378)
T TIGR03203         3 DLSEEQR-LLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGK   79 (378)
T ss_pred             CCCHHHH-HHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhC
Confidence            5788998 9999999999998876543  2466677998  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      ++.+.+.  ..+...+..++..+|+++||++||+++++|+.+.+++++||++|+|...+.|++++++|+|+|||+|.||+
T Consensus        80 ~~~~~~~--~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt  157 (378)
T TIGR03203        80 ALVLEPY--LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVL  157 (378)
T ss_pred             cccchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEec
Confidence            8765432  22222445578889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          188 NGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      ++..||+++|+++.++++ +.+++++|+||++.|||++.+.+.++|+   +++++.|+||+||+++++|.+++|++++++
T Consensus       158 ~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~  234 (378)
T TIGR03203       158 NGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIER  234 (378)
T ss_pred             CCccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHH
Confidence            999999999999975432 3457899999999999999665555554   568999999999999999999999876654


Q ss_pred             C
Q 023999          267 P  267 (274)
Q Consensus       267 ~  267 (274)
                      .
T Consensus       235 ~  235 (378)
T TIGR03203       235 V  235 (378)
T ss_pred             H
Confidence            3

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PLN02526 acyl-coenzyme A oxidase

Probab=100.00  E-value=3.4e-38  Score=289.82  Aligned_cols=225  Identities=31%  Similarity=0.546  Sum_probs=201.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~  109 (274)
                      .++++++ ++++.+++|+.+.+.+...+.+....+|.  ++|+++.++||+++.+ +++||.|+++.+.+.++|++|+.|
T Consensus        28 ~~t~~~~-~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~  103 (412)
T PLN02526         28 LLTPEEQ-ALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVD  103 (412)
T ss_pred             CCCHHHH-HHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhC
Confidence            3788888 99999999999999887766666677888  9999999999999999 999999999999999999999999


Q ss_pred             CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (274)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~  189 (274)
                      ++++..+..|...+...+..+++++||++|++++++|+++++++++||+.|+|...+.+++++++|||+|||+|.|++++
T Consensus       104 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~  183 (412)
T PLN02526        104 ASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNS  183 (412)
T ss_pred             chHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCC
Confidence            88765555555455567889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN  262 (274)
Q Consensus       190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~  262 (274)
                      ..||+++|.++.+++   .++.+|+||++.|||++.+.|+++|++++++++++|+||+||++++++..+ ++.
T Consensus       184 ~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~  252 (412)
T PLN02526        184 TFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQ  252 (412)
T ss_pred             CccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHH
Confidence            999999999997532   357889999999999999999999999999999999999999999997643 443

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=100.00  E-value=9.2e-38  Score=285.50  Aligned_cols=232  Identities=25%  Similarity=0.450  Sum_probs=196.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhch-hccCCCCC--cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      ..++++|+ ++++++++|+.+.+.+...+. .+.+.+|.  ..++|+.+.++||+++.+|++|||.|+++.+.+.++|++
T Consensus         2 ~~lteeq~-~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel   80 (395)
T TIGR03204         2 LAFSKEEQ-AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL   80 (395)
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence            35789999 999999999999988775442 23333442  137999999999999999999999999999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeec
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW  185 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~  185 (274)
                      |+++.+.++....+  .+...+..+++++||++|++++++|+.+.+++++||.+|+|...+.|++++++|+|+|||+|.|
T Consensus        81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~  158 (395)
T TIGR03204        81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW  158 (395)
T ss_pred             HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence            99998877543322  3344678889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          186 CTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       186 vs~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      |+++..||+++|.++.++++ +.+++.+|+||.+.|||++.+.....|  +.++++|.|+||+||+++++|.++.|+.++
T Consensus       159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  236 (395)
T TIGR03204       159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA  236 (395)
T ss_pred             ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence            99999999999999865322 235688999999999999965444433  678999999999999999999988888755


Q ss_pred             c
Q 023999          265 G  265 (274)
Q Consensus       265 ~  265 (274)
                      +
T Consensus       237 ~  237 (395)
T TIGR03204       237 K  237 (395)
T ss_pred             H
Confidence            4

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=100.00  E-value=2.2e-37  Score=283.03  Aligned_cols=232  Identities=25%  Similarity=0.373  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHHHHhhcCcchhchhccC-------CCCC--cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           35 TQLQFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      .+ ++++.+++|+++.+.|...+.++.+       .+|.  .+++|+.++++||+++.+|++|||.|+++.+++.++|++
T Consensus         3 ~~-~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l   81 (394)
T cd01155           3 AQ-ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET   81 (394)
T ss_pred             HH-HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence            45 8999999999999998766665421       1332  138999999999999999999999999999999999999


Q ss_pred             Hhhc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceEEEEEeCCeEEEeeEe
Q 023999          106 SRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNK  183 (274)
Q Consensus       106 g~~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k  183 (274)
                      ++++ .+.++....+...+...+..+++++|+++|++++++|++++++++|||. +|+|...+.+++++++|||+|||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k  161 (394)
T cd01155          82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK  161 (394)
T ss_pred             hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence            9986 3333222222212345788899999999999999999999999999997 6789888999999999999999999


Q ss_pred             ecccCCCC--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeEEeccCcccCCCC--CceeeEEeceeeeCCCCcccCC
Q 023999          184 MWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       184 ~~vs~~~~--a~~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~--~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      .|+||+.+  +++++|.++.++++  +..++.+|+||++.||+++.++|+++|+++  +++++|.|+||+||++++|+.+
T Consensus       162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~  241 (394)
T cd01155         162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE  241 (394)
T ss_pred             EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence            99999954  78999999875432  234688999999999999988999999997  5789999999999999999999


Q ss_pred             CcccccccCC
Q 023999          258 GKGCNSFGEP  267 (274)
Q Consensus       258 g~g~~~~~~~  267 (274)
                      ++|+.++...
T Consensus       242 ~~g~~~~~~~  251 (394)
T cd01155         242 GRGFEIAQGR  251 (394)
T ss_pred             ChHHHHHHHH
Confidence            8888765443

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=100.00  E-value=2.6e-37  Score=281.30  Aligned_cols=227  Identities=23%  Similarity=0.402  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhch-----hccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           34 DTQLQFKESVGQFARENIAPRAANI-----DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +|+ ++++.+++|+++.+.|.....     +..+.+|.  ++|+.|+++||+++.+|+++||.|.++.+++.++|++++.
T Consensus         2 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~   78 (380)
T cd01152           2 SEE-AFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAA   78 (380)
T ss_pred             cHH-HHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            567 999999999999988875432     33455777  8999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      +.++++.+..+. .....+..+++++|+++|++++++|+.+.++++|||..|+|...+.++++++++||+|||+|.|+++
T Consensus        79 ~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~  157 (380)
T cd01152          79 GAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSG  157 (380)
T ss_pred             CCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcC
Confidence            999887522222 4455788899999999999999999998999999999999998999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          189 GPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +..||+++|+++.+++ ++..++.+|+||++.||+++.+.|+++|  ++.++++.|+||+||++++||.+++|+.+..+
T Consensus       158 ~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~  234 (380)
T cd01152         158 AHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT  234 (380)
T ss_pred             ccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence            9999999999987543 2234688999999999999988888877  56789999999999999999999988876543

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=7.9e-37  Score=294.70  Aligned_cols=244  Identities=24%  Similarity=0.407  Sum_probs=198.4

Q ss_pred             hccccccccCCCCCCCHHHHHHHHHH-HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCH
Q 023999           17 KKQKHSAAFSSTSLLFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY   95 (274)
Q Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~   95 (274)
                      ..++...+++. ..+|+|++ ++++. +++|+.. +. .....++.+.+|.  ++|+.++++||+++.+|++|||.|++.
T Consensus        66 ~~~~~l~~~p~-~~Ls~ee~-~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~--e~w~~L~e~G~~gl~IPeeyGG~Gls~  139 (777)
T PRK09463         66 PDWKKLLNYPK-PTLTAEEQ-AFLDGPVEELCRM-VN-DWQITHELADLPP--EVWQFIKEHGFFGMIIPKEYGGLEFSA  139 (777)
T ss_pred             CChHHhcCCCC-CCCCHHHH-HHHHHHHHHHHHH-HH-HHHHhccccCCCH--HHHHHHHHCCCCcCCCchhhCCCCCCH
Confidence            33444444433 34789999 99996 7777542 21 1122233467898  999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhhhhhhhHHH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEE-----
Q 023999           96 LYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCK-----  169 (274)
Q Consensus        96 ~~~~~v~e~lg~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~-----  169 (274)
                      .+.+.++|++++++.+++..+..+..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||...+.++     
T Consensus       140 ~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~  219 (777)
T PRK09463        140 YAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCK  219 (777)
T ss_pred             HHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeee
Confidence            9999999999999888765555554344 3578899999999999999999999999999999999999887754     


Q ss_pred             EEEeCC---eEEEeeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceee
Q 023999          170 ADRVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE  240 (274)
Q Consensus       170 a~~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~  240 (274)
                      ++++++   ||+|||+|.|||++..||+++|+++. +++     +++.++++|+||++.|||++.+.+.++|++ ..+++
T Consensus       220 a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~  298 (777)
T PRK09463        220 GEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGP  298 (777)
T ss_pred             eeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccce
Confidence            344565   69999999999999999999999885 322     234578999999999999998889999998 56899


Q ss_pred             EEeceeeeCCCCcccCC---CcccccccCC
Q 023999          241 LVFENCFVPNENVLGQE---GKGCNSFGEP  267 (274)
Q Consensus       241 v~f~~v~Vp~~~llg~~---g~g~~~~~~~  267 (274)
                      +.|+||+||.+++||.+   |+|++++++.
T Consensus       299 v~fddV~VP~d~lLG~~~~~G~G~~~l~~~  328 (777)
T PRK09463        299 TRGKDVFIPLDYIIGGPKMAGQGWRMLMEC  328 (777)
T ss_pred             EEeeeeecCHHHhcccccccChHHHHHHHH
Confidence            99999999999999974   8999887654

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=100.00  E-value=2.7e-36  Score=290.11  Aligned_cols=232  Identities=24%  Similarity=0.363  Sum_probs=190.9

Q ss_pred             CCCHHHHHHHHH-HHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           30 LLFDDTQLQFKE-SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        30 ~~s~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      .+++|++ ++.+ .++.++. .+.. ....++.+.+|.  ++|+.+++.||+++.+|++|||.|.+..+.+.++|+++++
T Consensus        77 ~l~~eeq-~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~--evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~  151 (774)
T PRK13026         77 TLTAEEQ-AFIDNEVETLLT-MLDD-WDIVQNRKDLPP--EVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATR  151 (774)
T ss_pred             ccCHHHH-HHHHHHHHHHHh-hhhh-hhhhhhhcCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence            4677777 5555 5677744 2222 222345678999  9999999999999999999999999999999999999998


Q ss_pred             cCcchhhhhhhhHHH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEE-----EeCC---eEEE
Q 023999          109 SGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-----RVDG---GYII  179 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~-----~~~~---g~~l  179 (274)
                      +.+++..+..+..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||..+++++++     ++++   ||+|
T Consensus       152 ~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvL  231 (774)
T PRK13026        152 SVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRL  231 (774)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEE
Confidence            887765554444343 457888999999999999999999999999999999999988876554     4566   6999


Q ss_pred             eeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCc
Q 023999          180 NGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV  253 (274)
Q Consensus       180 ~G~k~~vs~~~~a~~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~l  253 (274)
                      ||+|.|||+++.||+++|.++. +++     ++..++++|+||++.|||++.+.++++|++.. ++++.|+||+||.+++
T Consensus       232 NG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~l  310 (774)
T PRK13026        232 TWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWI  310 (774)
T ss_pred             EEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHh
Confidence            9999999999999999887764 322     23457899999999999999888999999875 5899999999999999


Q ss_pred             ccCC---CcccccccCC
Q 023999          254 LGQE---GKGCNSFGEP  267 (274)
Q Consensus       254 lg~~---g~g~~~~~~~  267 (274)
                      ||.+   |+|++++++.
T Consensus       311 LG~~~~~G~G~~~l~~~  327 (774)
T PRK13026        311 IGGPDYAGRGWRMLVEC  327 (774)
T ss_pred             cCCcccCChHHHHHHHH
Confidence            9975   8898876653

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=100.00  E-value=9.9e-36  Score=273.18  Aligned_cols=221  Identities=31%  Similarity=0.526  Sum_probs=192.0

Q ss_pred             HHHHHHHHHhhcCcchhchhccCC--------CCCc-HHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999           40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG  110 (274)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~  110 (274)
                      ++++++|+.+.+.+.+.+.|+.+.        +|.. .++|++|.+.||+++.+|+++||.|.++.+...++|+++++|.
T Consensus         2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~   81 (407)
T cd01153           2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA   81 (407)
T ss_pred             hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence            678899999999988777776554        7842 3789999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCC
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG  189 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~  189 (274)
                      ++++.+..+  .+...+..+++++|+++|++.+++|+.+.++++|||++|+|...+.|+++++ +|+|+|||+|.|+|++
T Consensus        82 s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~  159 (407)
T cd01153          82 PLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG  159 (407)
T ss_pred             HHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence            987765544  3445677889999999999999999999999999999999999999999998 5689999999999999


Q ss_pred             CCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC-----CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023999          190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK  259 (274)
Q Consensus       190 ~~a----~~~lv~a~~~~~-~~~~~~~~~lv~~~~-----~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~  259 (274)
                      ..|    ++++|+++..++ ++.+++.+|+||++.     |||++.+.|+++|+++++++++.|+||+||   +||.++.
T Consensus       160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~  236 (407)
T cd01153         160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM  236 (407)
T ss_pred             CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence            876    577888886532 234468899999987     899999999999999999999999999999   8999888


Q ss_pred             cccccc
Q 023999          260 GCNSFG  265 (274)
Q Consensus       260 g~~~~~  265 (274)
                      |+++..
T Consensus       237 g~~~~~  242 (407)
T cd01153         237 GLAQMF  242 (407)
T ss_pred             cHHHHH
Confidence            876544

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=100.00  E-value=7.4e-36  Score=271.48  Aligned_cols=210  Identities=22%  Similarity=0.321  Sum_probs=185.6

Q ss_pred             HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHH
Q 023999           43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL  122 (274)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~  122 (274)
                      +++++ +.+.+.+.+.|+.+.+|.  +.|+.|++.||+++.+|++|||.|+++.+++.++|++++.++++++.+..|. .
T Consensus         3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~   78 (377)
T cd01163           3 ARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-G   78 (377)
T ss_pred             HHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence            45553 456777778888999999  9999999999999999999999999999999999999999999988777765 4


Q ss_pred             HHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999          123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (274)
Q Consensus       123 ~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~  202 (274)
                      ....+..+++++|+++|++++++|+++ +.+++||++++ .....+++.+++|||+|||+|.|+|++..||+++|.++.+
T Consensus        79 ~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~  156 (377)
T cd01163          79 FVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE  156 (377)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcC
Confidence            456788899999999999999999966 56999998765 5566677778889999999999999999999999999864


Q ss_pred             CCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999          203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN  262 (274)
Q Consensus       203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~  262 (274)
                      +    .+..+|+||++.|||++.+.|+++|++++++++|+|+||+||+++++|.++.|+.
T Consensus       157 ~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~  212 (377)
T cd01163         157 E----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR  212 (377)
T ss_pred             C----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc
Confidence            3    2567899999999999988899999999999999999999999999999888765

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=4e-35  Score=268.05  Aligned_cols=235  Identities=41%  Similarity=0.727  Sum_probs=202.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhc---cCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHH
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg  106 (274)
                      .+++++. ++.+.+++|+.+.+.+...+.+.   .+.+|.  ++|+.+.+.|++++.+|+++||.|.+..+...+.|+++
T Consensus         4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~   80 (393)
T COG1960           4 DLSEEQE-ALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA   80 (393)
T ss_pred             cCCHHHH-HHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence            3456777 99999999999998877666664   577786  99999999999999999999999999999999999999


Q ss_pred             hhcCcchhhhhhhhH---HHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCce-EEEEEeCCeEEEeeE
Q 023999          107 RASGSVGLSYGAHSN---LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIINGN  182 (274)
Q Consensus       107 ~~~~~~~~~~~~~~~---~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~-~~a~~~~~g~~l~G~  182 (274)
                      +.+.+.++....+..   .....+..+|+++|+++|+++++.|+++.|+++|||.+|+|+.... |++++.+|+|+|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~  160 (393)
T COG1960          81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQ  160 (393)
T ss_pred             hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeE
Confidence            999877654443321   1223566799999999999999999999999999999999999887 667776667999999


Q ss_pred             eecccCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCC-CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcc
Q 023999          183 KMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG  260 (274)
Q Consensus       183 k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~~lv~~~-~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g  260 (274)
                      |.|+|++..||+++|+|+++++ ++.+++++|+||++ .||+++.+.|+..|+++++++++.|+||+||.+++||.++.|
T Consensus       161 K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g  240 (393)
T COG1960         161 KIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDG  240 (393)
T ss_pred             EEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCch
Confidence            9999999999999999998765 45668999999999 599999776554499999999999999999999999999999


Q ss_pred             cccccCC
Q 023999          261 CNSFGEP  267 (274)
Q Consensus       261 ~~~~~~~  267 (274)
                      +.++...
T Consensus       241 ~~~~~~~  247 (393)
T COG1960         241 FKIAMET  247 (393)
T ss_pred             HHHHHHh
Confidence            8877655

>PLN02876 acyl-CoA dehydrogenase

Probab=100.00  E-value=1.5e-34  Score=285.46  Aligned_cols=235  Identities=26%  Similarity=0.411  Sum_probs=195.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC-------CCC-CcHHHHHHHH-hcCCcCCCCCcc------------
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-------SFP-QDVNLWKLMG-NFNLHGITAPQE------------   87 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~l~-~~G~~~l~vPe~------------   87 (274)
                      +.+|+++. ++++++++|+.+.+.|...+.++..       .+| .  +.|+.+. ++||+++.+|++            
T Consensus       400 ~~~s~~~~-~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~  476 (822)
T PLN02876        400 FVPSEKVL-ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFED  476 (822)
T ss_pred             cCCCHHHH-HHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence            45788988 9999999999999887664444221       255 4  7788875 999999999995            


Q ss_pred             ------------CCCCCCCHHHHHHHHHHHHhhcCcch-hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEe
Q 023999           88 ------------YGGLGLGYLYHCIAMEEISRASGSVG-LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM  154 (274)
Q Consensus        88 ------------~GG~g~~~~~~~~v~e~lg~~~~~~~-~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~  154 (274)
                                  +||.|+++.+.+.++|++|+++.+.. +....+...+...|..+|+++||++|++++++|++++++++
T Consensus       477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~  556 (822)
T PLN02876        477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM  556 (822)
T ss_pred             ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence                        99999999999999999999865422 21222221334578889999999999999999999999999


Q ss_pred             eCCC-CCCCCCCceEEEEEeCCeEEEeeEeecccCC--CCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcc
Q 023999          155 SEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDK  230 (274)
Q Consensus       155 te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~  230 (274)
                      |||+ +|+|..+++|++++++|||+|||+|.|++++  ..||+++|+++.+++. +.+++++|+||.+.|||++.++|++
T Consensus       557 tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~  636 (822)
T PLN02876        557 TEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLV  636 (822)
T ss_pred             cCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccce
Confidence            9997 7799999999999999999999999999998  5799999999875432 2346789999999999999889999


Q ss_pred             cCCCCC--ceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          231 LGMRGS--DTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       231 ~Gl~~~--~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +|++++  ++++|.|+||+||+++++|.+++|+++++.
T Consensus       637 ~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~  674 (822)
T PLN02876        637 FGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQG  674 (822)
T ss_pred             eccCCCCCCeeEEEEcceeechhheecCCCchHHHHHH
Confidence            999974  588999999999999999988888876543

>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=2.3e-35  Score=266.81  Aligned_cols=257  Identities=29%  Similarity=0.511  Sum_probs=219.9

Q ss_pred             hhhhhhhhhhhccccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCcc--hhchhccCCCCCcHHHHHHHHhcCCcCCCC
Q 023999            7 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPR--AANIDQSNSFPQDVNLWKLMGNFNLHGITA   84 (274)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~G~~~l~v   84 (274)
                      ++|+..+.|+-+...-.-|+=+.-+++|+. ++.+.+-.-+.+.+.+.  .+..|+.+..++  ..|+.|+++|+|++.|
T Consensus        52 ~rs~~~~lF~~~~v~k~v~~yPev~~~e~~-~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~v  128 (634)
T KOG0137|consen   52 SRSFARGLFRGKLVTKDVFPYPEVITSEQK-ELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQV  128 (634)
T ss_pred             chhHHHHhhhhhhhhhhhcCCcccCcHHHH-HHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeecc
Confidence            456666656555555555555677788877 66544444434433322  356777777888  9999999999999999


Q ss_pred             CccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC
Q 023999           85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV  164 (274)
Q Consensus        85 Pe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~  164 (274)
                      |.+++|.|+++.+++.+.|.++.++.++.+.+..|...+...|..||+++||++|||.+++|+.+++++++||..|||..
T Consensus       129 ~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaa  208 (634)
T KOG0137|consen  129 PSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAA  208 (634)
T ss_pred             CcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccc
Confidence            99999999999999999999999999998888888877788899999999999999999999999999999999999999


Q ss_pred             CceEEEEEeCC--eEEEeeEeecccCCCCCCEEEEEEEeCCC----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCce
Q 023999          165 GMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT  238 (274)
Q Consensus       165 ~~~~~a~~~~~--g~~l~G~k~~vs~~~~a~~~lv~a~~~~~----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~  238 (274)
                      ...++++...|  .|+|||.|.|++|+..||.++|+|++.-+    ..+++.++|+|+++..|++..++..++|.+++.+
T Consensus       209 s~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt  288 (634)
T KOG0137|consen  209 SGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNT  288 (634)
T ss_pred             cceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccce
Confidence            99999987554  49999999999999999999999998622    2356799999999999999999999999999999


Q ss_pred             eeEEeceeeeCCCCcccCCCcccccccC
Q 023999          239 CELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       239 ~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      .+|+|+++.||.+++||.+|+|++++++
T Consensus       289 ~~v~f~~~ki~~envlG~~G~G~kva~n  316 (634)
T KOG0137|consen  289 AEVHFEGVKIPIENVLGKPGDGFKVAMN  316 (634)
T ss_pred             eeeeeccccccHHHhcCCCCcchHHHHH
Confidence            9999999999999999999999998765

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-34  Score=273.64  Aligned_cols=233  Identities=26%  Similarity=0.435  Sum_probs=193.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCC---------CC-cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHH
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC   99 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~   99 (274)
                      +++++..+++++.+++|+.+.+.|...+.|+++.+         |+ +.++|+.+.+.||+++.+|+++||.|++.....
T Consensus        54 ~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~  133 (622)
T PTZ00456         54 DVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGF  133 (622)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHH
Confidence            46777777999999999999999988777766533         42 248999999999999999999999999987555


Q ss_pred             HHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCe-EE
Q 023999          100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YI  178 (274)
Q Consensus       100 ~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~~  178 (274)
                      .+.|.+++.++++++....+. .+...|..+|+++||++||+++++|++.+++++|||++|||+..+.|+|++++|| |+
T Consensus       134 ~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~  212 (622)
T PTZ00456        134 ITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYK  212 (622)
T ss_pred             HHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEE
Confidence            556667777776543333322 4456888999999999999999999999999999999999999999999999875 99


Q ss_pred             EeeEeecccCCCCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC----------CCeEEeccCcccCCCCCceeeEEe
Q 023999          179 INGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELVF  243 (274)
Q Consensus       179 l~G~k~~vs~~~~a----~~~lv~a~~~~~-~~~~~~~~~lv~~~~----------~gv~~~~~~~~~Gl~~~~~~~v~f  243 (274)
                      |||+|.|||++.++    ++++|+|+.+++ ++.+++++|+||++.          +||++.+..+++|+++++++.+.|
T Consensus       213 L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~f  292 (622)
T PTZ00456        213 ITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSF  292 (622)
T ss_pred             EeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEe
Confidence            99999999998763    678999998653 456789999999865          468877778999999999999999


Q ss_pred             ceeeeCCCCcccCCCcccccccC
Q 023999          244 ENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       244 ~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +|+   .+++||.+++|++++..
T Consensus       293 d~~---~~~llG~~~~Gl~~~~~  312 (622)
T PTZ00456        293 ENS---VGYLIGEPNAGMKQMFT  312 (622)
T ss_pred             eCh---hHhhcCCCChHHHHHHH
Confidence            994   58999999999876543

>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-33  Score=235.44  Aligned_cols=229  Identities=31%  Similarity=0.567  Sum_probs=209.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      .+.+++|++ .+++.+|+++++++.|...++.++..|+.  ++..++..+|++|..+ +.||=.|.+.+....+.+++.|
T Consensus        52 ~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl~~rEveR  127 (432)
T KOG0138|consen   52 EDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGLLAREVER  127 (432)
T ss_pred             hhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHHHHHHHHH
Confidence            367899999 99999999999999999999999999999  9999999999998876 4688889999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCe--EEEeeEeec
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMW  185 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g--~~l~G~k~~  185 (274)
                      .+.+....+..|+.++...|..+|+++||++|+|.+++|+.++||++|||.+|||+.++.|+|+.++.+  |.|||.|.|
T Consensus       128 VDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtW  207 (432)
T KOG0138|consen  128 VDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTW  207 (432)
T ss_pred             hhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeee
Confidence            998877777778879999999999999999999999999999999999999999999999999998887  999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       186 vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      ++|++.||.++|.||...+   ..+.=|+|+++.+|.+......++++|.+.++.+-.+||+||+++++    +|..-++
T Consensus       208 I~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~L----Pg~~s~q  280 (432)
T KOG0138|consen  208 ITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLL----PGASSLQ  280 (432)
T ss_pred             ecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcC----CCccccC
Confidence            9999999999999998642   35667999999999998777899999999999999999999999999    4455555


Q ss_pred             CC
Q 023999          266 EP  267 (274)
Q Consensus       266 ~~  267 (274)
                      .|
T Consensus       281 gp  282 (432)
T KOG0138|consen  281 GP  282 (432)
T ss_pred             Cc
Confidence            55

>PLN02636 acyl-coenzyme A oxidase

Probab=100.00  E-value=7.9e-32  Score=259.12  Aligned_cols=218  Identities=22%  Similarity=0.364  Sum_probs=189.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhhc---CcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHH
Q 023999           31 LFDDTQLQFKESVGQFARENI---APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS  106 (274)
Q Consensus        31 ~s~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg  106 (274)
                      +++++. ++++++++|+.+..   .+.....++.+.++ .  ++++.+.+.|++++.+|++      ++.++..+.|+++
T Consensus        61 l~~~~~-~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~  131 (686)
T PLN02636         61 MRGKHR-DIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAVG  131 (686)
T ss_pred             cCCcHH-HHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHHH
Confidence            456677 89999999988763   45455556666666 6  8999999999999999986      8899999999999


Q ss_pred             hhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe----
Q 023999          107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN----  180 (274)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~----  180 (274)
                      +.+++++..+..|..+....|..+|+++|+++||+++.+|++++|+|+|||++|||+.+++|+|+++  +|+|+||    
T Consensus       132 ~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~  211 (686)
T PLN02636        132 SVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPND  211 (686)
T ss_pred             hhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCC
Confidence            9998877666777656777889999999999999999999999999999999999999999999998  7889999    


Q ss_pred             -eEeecccCCCC-CCEEEEEEEeCCC------CCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCceeeEEece
Q 023999          181 -GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFEN  245 (274)
Q Consensus       181 -G~k~~vs~~~~-a~~~lv~a~~~~~------~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~f~~  245 (274)
                       |+|+|++|+.. ||+++|+|++..+      +++.++++|+||.+       .|||++.+..+++|+++.+++.+.|+|
T Consensus       212 ~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fdn  291 (686)
T PLN02636        212 GAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRS  291 (686)
T ss_pred             CeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEee
Confidence             99999999965 9999999997521      12468999999987       499999888999999999999999999


Q ss_pred             eeeCCCCcccCC
Q 023999          246 CFVPNENVLGQE  257 (274)
Q Consensus       246 v~Vp~~~llg~~  257 (274)
                      |+||.+++||..
T Consensus       292 VrVP~~nlLg~~  303 (686)
T PLN02636        292 VRIPRDNLLNRF  303 (686)
T ss_pred             EEECHHHhcccc
Confidence            999999999654

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.97  E-value=3.3e-30  Score=237.23  Aligned_cols=214  Identities=25%  Similarity=0.342  Sum_probs=176.0

Q ss_pred             HHHHHHhhcCcchhchhccCC------CCC-cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhh
Q 023999           43 VGQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLS  115 (274)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~  115 (274)
                      ..+++..+ .|.....|..+.      +|+ +.++++.+.+.||+++ +|+++||.|  ......+.+.++..+.....+
T Consensus        37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p  112 (418)
T cd01154          37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCP  112 (418)
T ss_pred             HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCc
Confidence            34444444 677777777776      562 2488999999999999 787887755  334445677777777666665


Q ss_pred             hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCC----ceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCC
Q 023999          116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGP  190 (274)
Q Consensus       116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~----~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~  190 (274)
                      +.++. .+...|..+|+++| ++|++++++|+    +++++++|||++|||+..++|+|+++ +|+|+|||+|.|+|++ 
T Consensus       113 ~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-  189 (418)
T cd01154         113 LTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-  189 (418)
T ss_pred             HHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-
Confidence            55555 57778889998886 47999999997    89999999999999999999999999 8899999999999999 


Q ss_pred             CCCEEEEEEEeCCC-CCCCCeEEEEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       191 ~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      .||+++|+|+.+++ ++.+++++|+||++.|     ||++.+.|+++|++++++++|.|+||.   +++||.+++|+.++
T Consensus       190 ~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~  266 (418)
T cd01154         190 LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYI  266 (418)
T ss_pred             ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHH
Confidence            99999999998653 3456899999999875     999999999999999999999999984   88999999998876


Q ss_pred             cC
Q 023999          265 GE  266 (274)
Q Consensus       265 ~~  266 (274)
                      ++
T Consensus       267 ~~  268 (418)
T cd01154         267 LE  268 (418)
T ss_pred             HH
Confidence            54

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.97  E-value=4.2e-30  Score=238.98  Aligned_cols=179  Identities=34%  Similarity=0.424  Sum_probs=153.6

Q ss_pred             HHHhc-CCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEE
Q 023999           73 LMGNF-NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA  151 (274)
Q Consensus        73 ~l~~~-G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~  151 (274)
                      .++++ ||+++.+|++|||.|+++.+++.++|++|+++.+.++.+..|...+...+..+|+++||++|||++++|+.+++
T Consensus        58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A  137 (520)
T PTZ00457         58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG  137 (520)
T ss_pred             chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence            36799 99999999999999999999999999999988776554444543556678889999999999999999999999


Q ss_pred             EEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCC----CCC---CCCeEEEEEeCCCCCeE
Q 023999          152 LAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFS  223 (274)
Q Consensus       152 ~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~----~~~---~~~~~~~lv~~~~~gv~  223 (274)
                      ++++| ++|+|...+.|+++++ +|+|+|||+|.|+ ++..||+++|+|++++    +.+   .+++++|+||++.|||+
T Consensus       138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt  215 (520)
T PTZ00457        138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS  215 (520)
T ss_pred             EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence            99988 8999999999999986 5579999999966 8999999999999743    112   24689999999999999


Q ss_pred             EeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       224 ~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      +..            ++|.|+||  |++++||.+|+|++++++.
T Consensus       216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~  245 (520)
T PTZ00457        216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMIT  245 (520)
T ss_pred             Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHH
Confidence            842            59999997  9999999999999876653

>PLN02312 acyl-CoA oxidase

Probab=99.97  E-value=5.4e-30  Score=246.03  Aligned_cols=193  Identities=23%  Similarity=0.323  Sum_probs=169.4

Q ss_pred             hccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHH
Q 023999           59 DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK  138 (274)
Q Consensus        59 ~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~  138 (274)
                      ++....+.  +.|+.+.+.|+.+..+|++  |.+ ++.+.+.++|++++.+++++..+..|..+....|..+|+++|+++
T Consensus       101 ~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~  175 (680)
T PLN02312        101 EQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDK  175 (680)
T ss_pred             HHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHH
Confidence            44445566  8999999999999999995  333 688889999999999888766666676567778888999999999


Q ss_pred             HhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccCC-CCCCEEEEEEEeCCCCCCCCe
Q 023999          139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGI  210 (274)
Q Consensus       139 ~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~-~~a~~~lv~a~~~~~~~~~~~  210 (274)
                      |++++.+|++++|+++|||++|||+.+++|+|+++  +|+|+||     |+|+|++|+ ..|++++|+|++..+.++.++
T Consensus       176 ~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv  255 (680)
T PLN02312        176 WLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGV  255 (680)
T ss_pred             HHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCe
Confidence            99999999999999999999999999999999997  4679999     799999998 799999999998654456689


Q ss_pred             EEEEEe---CC---CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999          211 TAFIIE---KG---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       211 ~~~lv~---~~---~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~  256 (274)
                      .+|+||   .+   .|||++.+..+++|+++.+++.|.|+||+||.+++||.
T Consensus       256 ~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~  307 (680)
T PLN02312        256 HAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNS  307 (680)
T ss_pred             EEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCc
Confidence            999998   23   79999998899999999999999999999999999984

>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=216.26  Aligned_cols=200  Identities=27%  Similarity=0.381  Sum_probs=172.9

Q ss_pred             HHHHHHHHhcCCcCCCCCcc--CCCCCCCHHHHHHHHHHHHhhc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh
Q 023999           68 VNLWKLMGNFNLHGITAPQE--YGGLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI  144 (274)
Q Consensus        68 ~~~~~~l~~~G~~~l~vPe~--~GG~g~~~~~~~~v~e~lg~~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  144 (274)
                      +++-+..+..|++.+++|..  ..|.|++.+|++.++|.+|+.. +|-.+.+.........+|.+||+++|+.+||-+++
T Consensus        30 ekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLL  109 (392)
T KOG1469|consen   30 EKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLL  109 (392)
T ss_pred             HHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHh
Confidence            34555567799999999976  5899999999999999999954 33344455555567889999999999999999999


Q ss_pred             cCCceEEEEeeCCC-CCCCCCCceEEEEEeCCeEEEeeEeecccCC--CCCCEEEEEEEeCCC--CCCCCeEEEEEeCCC
Q 023999          145 SGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGM  219 (274)
Q Consensus       145 ~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~  219 (274)
                      .|++..||+||||+ +.||..++++..++++|.|+|||+|+|+||+  +.|...+++.++++.  +..+.+++.|||.+.
T Consensus       110 eG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~T  189 (392)
T KOG1469|consen  110 EGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNT  189 (392)
T ss_pred             cCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCC
Confidence            99999999999999 6689999999999999999999999999997  678888999988765  234568899999999


Q ss_pred             CCeEEeccCcccCCCCCc--eeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          220 PGFSTAQKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       220 ~gv~~~~~~~~~Gl~~~~--~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      |||++.++...+|....+  ..+++|+||+||+.+++-.+|.||+|.+.-
T Consensus       190 pGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGR  239 (392)
T KOG1469|consen  190 PGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGR  239 (392)
T ss_pred             CCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccc
Confidence            999999999999987665  578999999999999999999999998753

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.97  E-value=2.6e-30  Score=234.55  Aligned_cols=196  Identities=20%  Similarity=0.324  Sum_probs=161.8

Q ss_pred             HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHH
Q 023999           43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL  122 (274)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~  122 (274)
                      ++++ .+.+.+.+.+.|+.+.+|.  ++|+.+++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+..+. .
T Consensus         3 ~~~~-~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~   78 (370)
T cd01159           3 AEDL-APLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T   78 (370)
T ss_pred             HHHH-HHHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence            3444 3346677778888889999  9999999999999999999999999999999999999999999887655443 4


Q ss_pred             HHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999          123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (274)
Q Consensus       123 ~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~  202 (274)
                      ....+..+++++|++.|++.. .+  ..+..          ..+.+++++++|||+|||+|.|+|++..+|+++|.++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~g~----------~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~  145 (370)
T cd01159          79 HSRMLAAFPPEAQEEVWGDGP-DT--LLAGS----------YAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE  145 (370)
T ss_pred             HHHHHHhCCHHHHHHHhCCCC-Cc--eEEee----------ecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence            455677788889988887642 11  11111          134568899999999999999999999999999999975


Q ss_pred             CCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      ++++..++++|+||++  ||++.+.|+++|++++++++++|+||+||++++|+..
T Consensus       146 ~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~  198 (370)
T cd01159         146 DDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAG  198 (370)
T ss_pred             CCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceeccc
Confidence            4434557889999987  9999889999999999999999999999999999754

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=99.95  E-value=1.1e-27  Score=213.42  Aligned_cols=182  Identities=39%  Similarity=0.748  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999           34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG  113 (274)
Q Consensus        34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~  113 (274)
                      +++ ++++.+++|+.+.+.+.....+.   ++.  ..|+.++++||+                                 
T Consensus         2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~---------------------------------   42 (327)
T cd00567           2 EQR-ELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL---------------------------------   42 (327)
T ss_pred             hHH-HHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH---------------------------------
Confidence            566 89999999999998887664444   444  568888899987                                 


Q ss_pred             hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999          114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (274)
Q Consensus       114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~  193 (274)
                              ++...|..+|+++|+++|++.+.+|+++++++++||.+|+|...+.+++++++|||+|||+|.|++++..||
T Consensus        43 --------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad  114 (327)
T cd00567          43 --------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD  114 (327)
T ss_pred             --------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence                    233466678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999          194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN  262 (274)
Q Consensus       194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~  262 (274)
                      +++|+++.++++ +..++.+|+||+++|||++.+.|+++|+++++++.++|+||+||++++++.++.|+.
T Consensus       115 ~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~  184 (327)
T cd00567         115 LFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFE  184 (327)
T ss_pred             EEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHH
Confidence            999999876432 344678999999999999999999999999999999999999999999999888764

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.93  E-value=2.1e-25  Score=213.27  Aligned_cols=163  Identities=26%  Similarity=0.372  Sum_probs=146.3

Q ss_pred             CHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe
Q 023999           94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV  173 (274)
Q Consensus        94 ~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~  173 (274)
                      ++.+...+.|++++.+++++..+..|..+....|..+|+++|+++|++++.+|++++|+++|||++|+|+.+++|+|+++
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            67788899999999998877666777656777899999999999999999999999999999999999999999999998


Q ss_pred             C--CeEEEe-----eEeecccCCC-CCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCce
Q 023999          174 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT  238 (274)
Q Consensus       174 ~--~g~~l~-----G~k~~vs~~~-~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~  238 (274)
                      +  ++|+||     |+|+|++|+. .|++++|+|+...+.++.++.+|+||..       .|||++.+.++++|+++.++
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn  239 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN  239 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence            8  889999     9999999875 5999999999754444568999999964       39999998899999999999


Q ss_pred             eeEEeceeeeCCCCcccC
Q 023999          239 CELVFENCFVPNENVLGQ  256 (274)
Q Consensus       239 ~~v~f~~v~Vp~~~llg~  256 (274)
                      +.+.|+||+||.+++|+.
T Consensus       240 g~l~Fd~vrVP~~nlL~~  257 (610)
T cd01150         240 GFLQFRNVRIPRENLLNR  257 (610)
T ss_pred             EEEEEeeeEecHHHhccc
Confidence            999999999999999986

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.93  E-value=5.4e-25  Score=206.12  Aligned_cols=187  Identities=21%  Similarity=0.345  Sum_probs=148.1

Q ss_pred             cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcC
Q 023999           67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG  146 (274)
Q Consensus        67 ~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G  146 (274)
                      +.++++.+.+.||.++..++++| .+ .....+......+...+....+..++  .+...+..+++++|+++|++++++|
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg  163 (538)
T PRK11561         88 WHLLMQGLCANRVHNLAWEEDAR-SG-AFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD  163 (538)
T ss_pred             HHHHHHHHHHcCCccCCCCCccC-ch-HHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence            45777888899999998887765 22 12222232333333333333333233  4455566678899999999999999


Q ss_pred             C-------------ceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCCCCCCCCeEE
Q 023999          147 E-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA  212 (274)
Q Consensus       147 ~-------------~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~  212 (274)
                      +             +++++++|||++|||+..++|+|++. +|+|+|||+|+|+| +..||+++|+|+.++     ++++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~~-----Gls~  237 (538)
T PRK11561        164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAKG-----GLSC  237 (538)
T ss_pred             CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEECC-----ceEE
Confidence            7             45699999999999999999999994 67799999999999 689999999999752     7999


Q ss_pred             EEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          213 FIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       213 ~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      |+||++.|     ||++.+.++++|++++++++|.|+||.   +++||.+++|++++.+
T Consensus       238 FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~  293 (538)
T PRK11561        238 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILK  293 (538)
T ss_pred             EEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHH
Confidence            99999988     799988899999999999999999983   8899999999987654

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=99.91  E-value=1.6e-23  Score=200.61  Aligned_cols=146  Identities=24%  Similarity=0.383  Sum_probs=127.7

Q ss_pred             cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEe
Q 023999          111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNK  183 (274)
Q Consensus       111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k  183 (274)
                      .....+..|..+....|..+|+++|+++||+++.+|++++|+++|||++|||+.+++|+|+++  +|+|+||     |+|
T Consensus        90 ~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K  169 (646)
T PTZ00460         90 QGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVK  169 (646)
T ss_pred             CCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEE
Confidence            333345556545566788899999999999999999999999999999999999999999985  6789998     999


Q ss_pred             ecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc
Q 023999          184 MWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG  255 (274)
Q Consensus       184 ~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg  255 (274)
                      +|++| +..|++++|+|+...+.++.++.+|+||..       .|||++.+..+++|+++.+++.+.|+||+||.+++||
T Consensus       170 ~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg  249 (646)
T PTZ00460        170 FWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLA  249 (646)
T ss_pred             EccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCC
Confidence            99997 689999999999865445678999999932       4999998888999999999999999999999999998


Q ss_pred             C
Q 023999          256 Q  256 (274)
Q Consensus       256 ~  256 (274)
                      .
T Consensus       250 ~  250 (646)
T PTZ00460        250 R  250 (646)
T ss_pred             c
Confidence            6

>PLN02443 acyl-coenzyme A oxidase

Probab=99.89  E-value=1.4e-22  Score=194.44  Aligned_cols=143  Identities=24%  Similarity=0.397  Sum_probs=125.6

Q ss_pred             hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccC
Q 023999          116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN  188 (274)
Q Consensus       116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~  188 (274)
                      +..|..+....|..+|+++|+++|++++.+|++++|+++|||++|+|+.++.|+|+.+  +|+|+||     |+|+|++|
T Consensus        99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~  178 (664)
T PLN02443         99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG  178 (664)
T ss_pred             eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence            3445445566788889999999999999999999999999999999999999999988  6789998     99999999


Q ss_pred             C-CCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccC---CCCCceeeEEeceeeeCCCCcccCC
Q 023999          189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       189 ~-~~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      + ..|++++|+|+...+.++.++.+|+||.+       .|||++.+..+++|   +++.+++.+.|+||+||.+++||..
T Consensus       179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~  258 (664)
T PLN02443        179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL  258 (664)
T ss_pred             CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence            6 78999999999765445668999999975       69999988899999   5568899999999999999999864


Q ss_pred             C
Q 023999          258 G  258 (274)
Q Consensus       258 g  258 (274)
                      +
T Consensus       259 ~  259 (664)
T PLN02443        259 S  259 (664)
T ss_pred             c
Confidence            3

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.80  E-value=1e-19  Score=137.47  Aligned_cols=113  Identities=41%  Similarity=0.775  Sum_probs=103.0

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (274)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~  111 (274)
                      |++++ ++++.+++|+.+.+.+...+.|+.+.+|.  ++|+++.+.||+++.+|+++||.|.++.+.+.+++++++++.+
T Consensus         1 t~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~   77 (113)
T PF02771_consen    1 TEEQQ-ALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADAS   77 (113)
T ss_dssp             SHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHH
T ss_pred             CHHHH-HHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccc
Confidence            57888 99999999999999888888887778998  9999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCC
Q 023999          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE  147 (274)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~  147 (274)
                      +++.+..|..+++..|..+|+++||++|+|++++|+
T Consensus        78 ~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   78 LAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             HHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             ccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            888777776456678999999999999999999986

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=2.9e-17  Score=148.71  Aligned_cols=186  Identities=26%  Similarity=0.346  Sum_probs=156.8

Q ss_pred             HHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCc
Q 023999           69 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH  148 (274)
Q Consensus        69 ~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~  148 (274)
                      ..|..+.+.|.+....-+..   -........+.|.+|.++.+++.-+..|..+....+..+|++..++ |+.++-.-++
T Consensus        81 ~r~~~l~~~gv~~~~~~~~~---~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev  156 (661)
T KOG0135|consen   81 KRIKRLVELGVFKFWLVEDG---PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV  156 (661)
T ss_pred             HHHHHHHHhccCcceeecCc---hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence            45666776676554443320   0133467789999999999999889999888888999999998887 9999999999


Q ss_pred             eEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-
Q 023999          149 VGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-  219 (274)
Q Consensus       149 ~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~-  219 (274)
                      .+|+|+||..+|||..+++|+|+.+  .+.|+||     -.|.||.| +.+|++.+|+|+.--+....++..|+|+..+ 
T Consensus       157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp  236 (661)
T KOG0135|consen  157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP  236 (661)
T ss_pred             eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence            9999999999999999999999987  6789997     68999988 5899999999998655556788899999654 


Q ss_pred             ------CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999          220 ------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (274)
Q Consensus       220 ------~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g  258 (274)
                            |||.+.+.-.+.|++|..++.+.|+|++||.+++|.+-+
T Consensus       237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~g  281 (661)
T KOG0135|consen  237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFG  281 (661)
T ss_pred             cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhcc
Confidence                  799999989999999999999999999999999996644

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=99.54  E-value=1.3e-14  Score=93.93  Aligned_cols=51  Identities=41%  Similarity=0.748  Sum_probs=46.6

Q ss_pred             EEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEe
Q 023999          151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT  201 (274)
Q Consensus       151 ~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~  201 (274)
                      ++|++||++|+|+..+++++++++++|+|||+|.||+++..||+++|+||.
T Consensus         1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~   51 (52)
T PF02770_consen    1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART   51 (52)
T ss_dssp             EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred             CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence            689999999999999999999999999999999999999999999999996

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=99.48  E-value=3.9e-13  Score=125.08  Aligned_cols=129  Identities=22%  Similarity=0.361  Sum_probs=102.6

Q ss_pred             HHHHHHhHHHhcCCceEEEEeeCCCCCCCC-----CC--ceE-EEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCC
Q 023999          134 AQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VG--MKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA  205 (274)
Q Consensus       134 ~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-----~~--~~~-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~  205 (274)
                      +...+|+..+.+.++..+-+++.|..-...     ..  +.+ .+++++|||+|||.|.|+|++ .||.++|+++.+..+
T Consensus       127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~  205 (477)
T TIGR02309       127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA  205 (477)
T ss_pred             HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence            456689999999999999999998743221     11  222 345678899999999999996 999999999876533


Q ss_pred             CC-CC--eEEEEEeCCCCCeEEeccCcccCCCCC-----------ceeeEEeceeeeCCCCc--ccCC---Cccccc
Q 023999          206 GS-KG--ITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---GKGCNS  263 (274)
Q Consensus       206 ~~-~~--~~~~lv~~~~~gv~~~~~~~~~Gl~~~-----------~~~~v~f~~v~Vp~~~l--lg~~---g~g~~~  263 (274)
                      +. ++  ...|+||.++||+++......+|.++.           ..+.|.|+||+||++++  +|..   +.|+..
T Consensus       206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~  282 (477)
T TIGR02309       206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAA  282 (477)
T ss_pred             ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHH
Confidence            32 22  578999999999999988888888866           67999999999999999  8887   666644

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]

Probab=99.42  E-value=2e-12  Score=119.85  Aligned_cols=160  Identities=25%  Similarity=0.403  Sum_probs=130.7

Q ss_pred             hhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEEe-----eEeec
Q 023999          113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN-----GNKMW  185 (274)
Q Consensus       113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~-----G~k~~  185 (274)
                      ..++..|..+..-.|..-+++||.++|+.+....++++|.|-||.++|++++...|+|+.+.  +.|+||     ..|+|
T Consensus       108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW  187 (670)
T KOG0136|consen  108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW  187 (670)
T ss_pred             CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence            34455666677778888899999999999999999999999999999999999999998765  468885     89999


Q ss_pred             ccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-------CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC-
Q 023999          186 CTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ-  256 (274)
Q Consensus       186 vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~-------~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~-  256 (274)
                      ..+ +..++|.+|.|+.-......++..|+||..+       |||++++.-.+||.++..++-+.|+||+||.++++-+ 
T Consensus       188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~  267 (670)
T KOG0136|consen  188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRH  267 (670)
T ss_pred             CCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhh
Confidence            877 6889999999997655456678889999654       8999999999999999999999999999999998754 


Q ss_pred             ---CCcccccccCCccccc
Q 023999          257 ---EGKGCNSFGEPKIFNY  272 (274)
Q Consensus       257 ---~g~g~~~~~~~~~~~~  272 (274)
                         ..+|-.+...+...+|
T Consensus       268 ~kV~~dGtyv~p~~~~l~Y  286 (670)
T KOG0136|consen  268 AKVEPDGTYVKPPHPKLGY  286 (670)
T ss_pred             heecCCCccccCCccccce
Confidence               3445333333343333

>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []

Probab=98.63  E-value=2.9e-07  Score=78.99  Aligned_cols=122  Identities=20%  Similarity=0.404  Sum_probs=78.0

Q ss_pred             HHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC------CceEEE-EEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCC
Q 023999          133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDVV------GMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA  205 (274)
Q Consensus       133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~------~~~~~a-~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~  205 (274)
                      .+...+|...+.+.++..+.+++.|..-....      .+.+.+ +++++|.+|+|.|...|++..+|.++|+-...-.+
T Consensus       122 ~~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~  201 (264)
T PF11794_consen  122 AENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRP  201 (264)
T ss_dssp             HHHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTT
T ss_pred             HHHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCC
Confidence            35566888889999999999999997332211      133444 56789999999999999999999999985443222


Q ss_pred             CCCC-eEEEEEeCCCCCeEEeccCcccCCC------------CCceeeEEeceeeeCCCCcc
Q 023999          206 GSKG-ITAFIIEKGMPGFSTAQKLDKLGMR------------GSDTCELVFENCFVPNENVL  254 (274)
Q Consensus       206 ~~~~-~~~~lv~~~~~gv~~~~~~~~~Gl~------------~~~~~~v~f~~v~Vp~~~ll  254 (274)
                      +++. -..|.||.++||+++........-+            ...-+-|.|+||+||++.++
T Consensus       202 ~d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF  263 (264)
T PF11794_consen  202 GDEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF  263 (264)
T ss_dssp             CCGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred             CCCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence            3333 4579999999999987643211111            11236699999999998764

The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.

>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.42  E-value=1.7e-06  Score=78.88  Aligned_cols=121  Identities=18%  Similarity=0.328  Sum_probs=86.4

Q ss_pred             HHHHHHhHHHhcCCceEEEEeeCCCCCCCCC-------CceEEE-EEeCCeEEEeeEeecccCCCCCCEEEEE-EEeCCC
Q 023999          134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVV-------GMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIK  204 (274)
Q Consensus       134 ~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~-------~~~~~a-~~~~~g~~l~G~k~~vs~~~~a~~~lv~-a~~~~~  204 (274)
                      +.-.+|+..+...++..+-|++.|..-....       .+.+.+ +++++|.+++|.|..+|++..+|..+|+ .+....
T Consensus       131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~  210 (493)
T COG2368         131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE  210 (493)
T ss_pred             HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence            4566899999999999999999986443211       233444 4678999999999999999999998888 443322


Q ss_pred             CCCCCeEEEEEeCCCCCeEEeccCc---ccCCCCCce------------eeEEeceeeeCCCCcc
Q 023999          205 AGSKGITAFIIEKGMPGFSTAQKLD---KLGMRGSDT------------CELVFENCFVPNENVL  254 (274)
Q Consensus       205 ~~~~~~~~~lv~~~~~gv~~~~~~~---~~Gl~~~~~------------~~v~f~~v~Vp~~~ll  254 (274)
                      +..+--..|.+|.++|||++.....   .-|+.+.+.            +-|.||||+||++.++
T Consensus       211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf  275 (493)
T COG2368         211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVF  275 (493)
T ss_pred             CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhhee
Confidence            2222345799999999998765431   122222222            3399999999999875

>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component

Probab=98.36  E-value=8.1e-06  Score=76.57  Aligned_cols=122  Identities=17%  Similarity=0.250  Sum_probs=85.6

Q ss_pred             HHHHHHHhHHHhcCCceEEEEeeCCCCCCCC-----CCceEE-EEEeCCeEEEeeEeecccCCCCCCEEEEE-EEeCCCC
Q 023999          133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VGMKCK-ADRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIKA  205 (274)
Q Consensus       133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-----~~~~~~-a~~~~~g~~l~G~k~~vs~~~~a~~~lv~-a~~~~~~  205 (274)
                      .+...+|+..+.+.++..+-+++.|..-...     ..+-.. ++++++|.+|+|.|...|++..+|.++|+ ....--.
T Consensus       135 ~~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~  214 (519)
T TIGR02310       135 EDNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIG  214 (519)
T ss_pred             HHHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccC
Confidence            3556789999999999999999998744321     122233 45678899999999999999999998883 3321001


Q ss_pred             CCCCe-EEEEEeCCCCCeEEeccCccc--------CCC-------CCceeeEEeceeeeCCCCcc
Q 023999          206 GSKGI-TAFIIEKGMPGFSTAQKLDKL--------GMR-------GSDTCELVFENCFVPNENVL  254 (274)
Q Consensus       206 ~~~~~-~~~lv~~~~~gv~~~~~~~~~--------Gl~-------~~~~~~v~f~~v~Vp~~~ll  254 (274)
                      +++.+ ..|.||.++||+++.......        ..+       ...-+-|.||||+||+++++
T Consensus       215 ~d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF  279 (519)
T TIGR02310       215 DNDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVL  279 (519)
T ss_pred             CCCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHce
Confidence            13344 478999999999987542111        011       22245699999999999875

This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=85.12  E-value=1.3  Score=33.60  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=26.2

Q ss_pred             hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCc
Q 023999          116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH  148 (274)
Q Consensus       116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~  148 (274)
                      +..|..+..-.|...|+++|+++|+|...+.++
T Consensus        92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            456766777888999999999999999877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		2e-81
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		2e-37
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		3e-37
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		7e-37
1buc_A	383	Three-Dimensional Structure Of Butyryl-Coa Dehydrog		1e-36
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		1e-35
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		4e-35
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		2e-34
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		3e-34
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		3e-34
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		1e-33
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		4e-33
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		4e-32
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		7e-31
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		7e-31
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		2e-30
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		6e-30
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		7e-30
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		8e-30
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		1e-29
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		7e-29
2a1t_A	421	Structure Of The Human Mcad:etf E165betaa Complex L		8e-29
1ege_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		8e-29
1egd_A	396	Structure Of T255e, E376g Mutant Of Human Medium Ch		9e-29
3r7k_A	403	Crystal Structure Of A Probable Acyl Coa Dehydrogen		2e-26
3oib_A	403	Crystal Structure Of A Putative Acyl-Coa Dehydrogen		5e-26
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		8e-25
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-23
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-23
3sf6_A	403	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		3e-23
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		1e-22
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		2e-22
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		2e-22
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		2e-22
1rx0_A	393	Crystal Structure Of Isobutyryl-Coa Dehydrogenase C		6e-22
3m9v_A	439	X-Ray Structure Of A Kijd3 In Complex With Dtdp Len		1e-11
3mxl_A	395	Crystal Structure Of Nitrososynthase From Micromono		3e-11
2wbi_A	428	Crystal Structure Of Human Acyl-Coa Dehydrogenase 1		5e-08
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		2e-07
1r2j_A	366	Fkbi For Biosynthesis Of Methoxymalonyl Extender Un		3e-07
3djl_A	541	Crystal Structure Of Alkylation Response Protein E.		4e-07
4hr3_A	415	Structure Of A Putative Acyl-Coa Dehydrogenase From		5e-06
2fon_A	683	X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid		6e-04
2c0u_A	439	Crystal Structure Of A Covalent Complex Of Nitroalk		6e-04

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 177/231 (76%), Gaps = 2/231 (0%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +    
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                 H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KG
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 45  QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEE 104
           +F +  +AP AA  D++ +FP D  L + +  F + G   P+               +E 
Sbjct: 20  EFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77
Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
           I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA  ++EP +GSD  
Sbjct: 78  IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAA 137
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGSKGITAFIIEKGMP 220
            +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   +GI+AF   +   
Sbjct: 138 ALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER 197
Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           G    +K +KLG+  SDT +L+ E+ FVP E +LG+ GKG
Sbjct: 198 GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKG 237

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 2/232 (0%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+   +T    +++   FA + + P AA +D+ + FP   +  K MG   L  +  P+E 
Sbjct: 7   SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEEL 64
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                    + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ 
Sbjct: 65  SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 124
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +K
Sbjct: 125 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 184
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G G
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMG 236

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score =  150 bits (379), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 9/232 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXX 89
           F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E  
Sbjct: 29  FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYG 84
Query: 90  XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEH 148
                     + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E 
Sbjct: 85  GTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EK 142
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D   G K
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 202
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GIT+F++++  PG    +  +KLG+R S TC L FEN  VP  N+LGQ G G
Sbjct: 203 GITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHG 254

>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  +GA  ++EP
Sbjct: 72  YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 158 NAGSDVVGMKCKADR-VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
           NAG+D  G +  A +  DG Y +NG+K++ TNG  A   +V+A TD   G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 217 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+EGKG
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKG 235

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+   +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E 
Sbjct: 3   SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEEL 60
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                    + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ 
Sbjct: 61  GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +G  A+SEP  GSD  G      R +G  +++NG K W TN   A   VV+A TD    +
Sbjct: 121 IGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           K I+AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 13/224 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNLW---KLMGNFNLHGITAPQEXXXXXXXXXX 97
           ++V + ARE + P A   D+   +P     W   K +    L G+T P+E          
Sbjct: 12  DAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
             +A+EE++ A  SV +     S L    L+R GS AQK +YL  L  GE +GA  ++EP
Sbjct: 67  WALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP 126
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
            AGSD   ++ +A RV GG+++NG K W T+   A   VV A+T+     KGI+AF++EK
Sbjct: 127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEK 181
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
           G PG S  +  +K+G+  + T E+  E  FVP EN+LG+EG+G 
Sbjct: 182 GTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGL 225

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 16  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 73
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 74  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 133
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 134 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 192
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L
Sbjct: 193 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 241

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 12  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 69
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 70  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 129
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 130 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 188
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L
Sbjct: 189 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 237

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30  LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           LL D    D +   +++   +A+  +APR     +  +   D  +++ MG   L G T P
Sbjct: 13  LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 70
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
           ++          + +   E+ R            S+L +  +   GS AQK+KYLPKL +
Sbjct: 71  EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE +G   ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + 
Sbjct: 131 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 189
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           G   I  FI+EKG  G S      K+G+R S T E+V +  FVP EN+L
Sbjct: 190 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 238

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 6/230 (2%)
Query: 36  QLQ-FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXX 94
           +LQ  ++ V  F  + I P A   D  N FP +  + + MG     G   P+E       
Sbjct: 8   ELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYGGEGMD 66
Query: 95  X--XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
                  I  EEI+R S ++ +        C   ++ +GS A K KY+PKL S E +G  
Sbjct: 67  QGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGF 126
Query: 153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
            ++EP+AGSDV+ M   A+     +++NG+K W +N   A  L+ YA TD  AGS+G++A
Sbjct: 127 GITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSA 186
Query: 213 FIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
           F+IE +  PG  T+  L+KLG   S T EL  +N  VP EN+LG+ G G 
Sbjct: 187 FVIEPRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPKENILGKPGDGA 235

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA---PQEXXX 90
           +  +  +E++   A + IAP AA +D+   FP++      +   N  G +A   P+E   
Sbjct: 21  EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA-----LAALNSSGFSAIHVPEEYGG 75
Query: 91  XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
                   CI +EE++R   S  L   A + L    L+  GS   K + LP + SGE + 
Sbjct: 76  QGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
           + A+SE  AGSD   M+ +A      +I+NG+K W TNG  +    V A TD   G+ GI
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTG 244

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 8/231 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
           FD++  +   +   F    + P    ++       +V L +  G   L  I  P+E    
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLERMEHGE-LELNVPLMRKAGELGLLAIDVPEEYGGL 86
Query: 92  XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
                   +  EE+S  SG   ++YGAH+++    LV  G+  QK KYLPKL SGE + A
Sbjct: 87  DLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
             ++EP +GSD +  K +A   + G  YI+NG K W +N   A    V+AK D     + 
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GEH 201
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            TAF++E+  PG S   +  K+G++ S T +++ E+  VP ENVLG+ GKG
Sbjct: 202 FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKG 252

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score =  130 bits (328), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 9/232 (3%)
Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI---TAPQEX 88
             + Q Q +    +FA+E I P A   D+    P     W ++   +  G+     P+E 
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP-----WPVIEKLHEVGLLNAIIPEEY 59
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                      I  EE++ A   +  +    S+L I  ++  G+  QK+++L  L     
Sbjct: 60  GGMGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPA 118
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           + A A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   K
Sbjct: 119 LAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHK 178
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           G+ A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+EG+G
Sbjct: 179 GVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEG 230

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)
Query: 46  FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
           F    + P    ++Q + F + V L K  G   L G   P+E            +  E+ 
Sbjct: 47  FIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKF 105
Query: 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG 165
           SRA G   +++GAH  +    +V  G+  QK KYLP L +GE + A A++EP +GSD +G
Sbjct: 106 SRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALG 164
Query: 166 MKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
            K  A     G  Y++NG K W TN   A   +VYAK D     +  +AFI+EK   G S
Sbjct: 165 AKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID----GEHFSAFIVEKDYAGVS 220
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           T+ +  K G++ S T  L+ E+  VP EN+LG+ GKG
Sbjct: 221 TSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKG 257

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 9/237 (3%)
Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-- 85
           T+    +    F+ +  +F  +   P   + ++    P+  + W  MG    +G   P  
Sbjct: 6   TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGE---NGFLCPWV 60
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
            E          + + + E     GS  +  G H+++    +  +G+  QK K+LPK ++
Sbjct: 61  DEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVT 120
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE + A+AM+EP AGSD+  +   A +    YI+NG K + TNG  A  +VV  KTD +A
Sbjct: 121 GELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQA 180
Query: 206 G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
               +GI+  ++E+  PGF+  +KL+K+G+   DT EL F++  VP  N+LG+EGKG
Sbjct: 181 KPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKG 237

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
           E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E      
Sbjct: 48  EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 107
Query: 94  XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 108 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 167
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 168 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G
Sbjct: 228 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSG 281

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 41  ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
           E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E      
Sbjct: 28  EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 87
Query: 94  XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 88  CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 147
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 148 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 207
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G
Sbjct: 208 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSG 261

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 117/239 (48%), Gaps = 8/239 (3%)
Query: 26  SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
           S  S    + Q +F+ +  +FARE I P AA  D++  +P  V L K      L     P
Sbjct: 10  SGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIP 67
Query: 86  QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLI 144
           +            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++ 
Sbjct: 68  ESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 125
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
               + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D  
Sbjct: 126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 185
Query: 205 ---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
                SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G
Sbjct: 186 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAG 244

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S    + Q +F+ +  +FARE I P AA  D++  +P  V L K      L     P+  
Sbjct: 3   SFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESF 60
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGE 147
                     C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++    
Sbjct: 61  GGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEP 118
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--- 204
            + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D     
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAG 234

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 5/233 (2%)
Query: 30  LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXX 89
           LL      +  E   + A + + P     ++  ++P+ V  ++ +G   L  +  P+E  
Sbjct: 14  LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEEWG 71
Query: 90  XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
                   +   +EEI+    SV ++   HS L  + L+  G+  QK ++LP ++SGE +
Sbjct: 72  GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           GA ++SEP AGSD   ++C A   DGGY+ING+K W T+G  A    ++A+T    GS+G
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRG 188
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
           ++ F++    PG S  +  +K+G+    T    ++N  +  +  +G+EG+G  
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQ 241

>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 38  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 93
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 94  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 151
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 152 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G
Sbjct: 212 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 269

>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 13  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 69  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 244

>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396

Iteration: 1
 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
           S  F + Q +F+ +  +FARE I P AA  D++  +P  +    W+L G  N H    P+
Sbjct: 13  SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
                       C+  EE+  A G  G+      N L    ++  G+  QK KYL ++  
Sbjct: 69  NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
              + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D   
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
               +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 244

>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 46  FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
           F    IAP+ A  +     P+D++L        L GI  P+E            +  E I
Sbjct: 43  FVEREIAPKLAEWEHVGEIPRDLHL--NAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100
Query: 106 SRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
             A GS G+     ++ + +  +  +GS A  ++Y+   ++G+ +G+L ++EP AGSDV 
Sbjct: 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVA 160
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
            ++ +A R    Y++NG K + T+G  A  +    +T    G  G++  +I+K  PGF  
Sbjct: 161 NLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEV 219
Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +++LDK+G R SDT EL F +  VP +N++G E  G
Sbjct: 220 SRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSG 255

>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 27  STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ 86
           S S+     +   +++V  FA   + P A   +++   P++++  +      L G   P+
Sbjct: 21  SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELH--RKAAELGLLGAGFPE 78
Query: 87  EXXXXXXXXXXHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLI 144
           +            +  EE+  A GS G  Y +     + +  ++  G     D Y+   +
Sbjct: 79  DAGGSGGDGADPVVICEEMHYA-GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
            GE +GALA++EP  GSDV  ++ +AD     Y+ING K + T+G  A  +V  A+T   
Sbjct: 138 RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-G 196
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            G+ G++  +++KG PGF   +KLDK+G R SDT EL + +  VP  N++G E  G
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTG 252

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
           T  L D  +     +V QF    + P      +S + P +  L K  GN  + G+   Q 
Sbjct: 22  TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHL-QG 78
Query: 88  XXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
                     + +A  E+               +L +  + R+GS  QK+++LP+L +G+
Sbjct: 79  YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +G   ++EP+ GS+  GM+ +A R    +I+NG KMW TNG +A    V+A+TD     
Sbjct: 139 AIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 249
            GI  F++    PGF+  +   KL +R S T ELV +N  +P
Sbjct: 194 DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLP 235

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
           + GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I  FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
             PG    +  +K+G+R     +++ +N FVP+E+ L     G NSF
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSF 277

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 98  HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
           + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
           + GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I  FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
             PG    +  +K+G+R     +++ +N FVP+E+ L     G NSF
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSF 277

>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 9/137 (6%)
Query: 131 GSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190
           GS  QKD++LP + SG  +G   ++EP+ GSD  GM+ +A R    +I+ G KMW TNG 
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250
           VA   VV+A+TD     +GI  F++    PGF+      K+ +R S T ELV +   +P+
Sbjct: 187 VADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241
Query: 251 ENVLGQEGKGCNSFGEP 267
              L     G  S G P
Sbjct: 242 SARL----PGATSLGAP 254

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 18  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 75
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 76  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 134
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 135 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 190
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL     G +S G P
Sbjct: 191 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 240

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 20  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 78  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL     G +S G P
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 242

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36  QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
           ++  +++   + +E + PR    +++  F +++     MG   + G T            
Sbjct: 20  EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96  XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
               +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++
Sbjct: 78  AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
           EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +       I  F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
           ++EKGM G S  +   K  +R S T  ++ +   VP ENVL     G +S G P
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 242

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 7/227 (3%)
Query: 25  FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
           F +   L    + + +++  +F  +   P   +  +   FP   +L          G T 
Sbjct: 4   FYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGPTL 61
Query: 85  PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
           P E          + +   E+ R    +       S+L +  +  +GS  QK ++LPKL 
Sbjct: 62  PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 145 SGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203
            GE VG   ++EP+ GSD  G MK +A R    +++NG KMW TNG +A   V++AK + 
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE- 180
Query: 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250
                 +  F++    PGF   +   K+ +R S T ELV E   VP 
Sbjct: 181 ---GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPE 224

>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
           S+  ++ Q +F++    FA   +AP  A  DQ   FP DV   +        G+    + 
Sbjct: 16  SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDV 73
Query: 89  XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
                      +  E ++    S       H N+C   +   G+  Q+ K+ P L + E 
Sbjct: 74  GGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEK 132
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
             +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G K
Sbjct: 133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPK 191
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           GI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G
Sbjct: 192 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQG 243

>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
           GG++++G K   +  PV    V+ A+TD   G   + + ++ +  PGF+     D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 235 GSDTCELVFENCFVPNENVLGQEGKGCN 262
            S T ++VF++C +P ++VL ++  G  
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGAR 248

>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 13/211 (6%)
Query: 50  NIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRA 108
            I+  AA+ D++ +FP  V  ++      L G T P E              A+  ++ A
Sbjct: 26  RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 109 SGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDV 163
             S  L++       L +    +HG+P   A  ++ L  +  GE     A+ +       
Sbjct: 84  DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
           V  +  +D   GG++++G K+  +  P+A    V+A+     GS  +   ++ +  PG +
Sbjct: 140 VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
                D LGMR S T E+VF+ C V  + +L
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELL 229

>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 188
           +GS  QK ++L  L+ G       M+EP+ A SD   ++C   R +  Y+ING K W + 
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 189 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 241
              P  +  +V  +T   + S  K  +  ++    PG    + L   G   +      E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 242 VFENCFVPNENVLGQEGKG 260
            F    VP  N++  EG+G
Sbjct: 250 HFNQVRVPATNLILGEGRG 268

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 102 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
           + EI+ A GS+G  +G H +N  + +L+  GS  Q++    ++         A SE N  
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 161 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 218
           S V+  K  A    DGGY++NG K +C+    +  L V+      +  +G I A  I   
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
             G +       +GMR +D+    F N  V  + VLG
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLG 252

>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 129 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 187
           R G   Q+  +L +L SG+ + A+  SE  AGSD+  M+ +  R+DG   +++G+K+W T
Sbjct: 87  RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 247
               A  LVV+   +  +G+      ++    PG    +     G R +   +L  +   
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 248 VPNENVLGQEG 258
           VP   VL   G
Sbjct: 201 VPAGAVLAGSG 211

>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 19/139 (13%)
Query: 132 SPAQKDKYLPKLISGEH----VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186
           +P   D+Y   L+ G      +  + M+E   GSDV+    +A+R+ DG Y + G+K W 
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
            + P +   +V A+T     + G++ F + + +P G   A +L    DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 242 VFENCFVPNENVLGQEGKG 260
            F++       +LG EG+G
Sbjct: 272 EFQDAI---GWLLGLEGEG 287

>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
           L R+GS  QK+ +L  L+ G+   A  M+EP+ A SD   M   A       +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 186 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 242
            T    P  + ++    TD  A      + + +    PG +  + L  +G         V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 243 --FENCFVPNENVLGQEGKG 260
             F+N  +P +  +   GKG
Sbjct: 241 VSFDNVRLPADAFIAGPGKG 260

>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
           H  + I  +   G+  Q++K+LP     + +G  A +E   GS+V G++  A  D     
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
           ++I+      +K W    G V+   VVYA+        G+  FI++       K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254
                 K G       D   L F++  +P + +L
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQML 274

>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
           I +EE+     +  ++  A + L +  ++   SP+ ++K+L   ISGE   + +L  SEP
Sbjct: 78  IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
           N  ++ +     G++  A +V   ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-144
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	1e-132
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	1e-121
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	1e-119
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	1e-112
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	1e-109
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	1e-108
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	1e-107
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-107
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	1e-106
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	1e-106
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	1e-105
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-105
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	1e-103
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	1e-103
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	1e-103
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	1e-101
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	1e-100
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-98
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	9e-98
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-95
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	8e-90
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	1e-89
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	4e-87
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	2e-86
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	9e-86
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	1e-84
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	1e-84
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	3e-79
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	4e-44
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-43
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	7e-39
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	3e-32
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	3e-31
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	1e-22
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	3e-22
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	5e-20
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	2e-17
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score =  408 bits (1052), Expect = e-144
 Identities = 150/231 (64%), Positives = 185/231 (80%), Gaps = 2/231 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 13  LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E KG
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score =  379 bits (976), Expect = e-132
 Identities = 87/232 (37%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
                   ++ V  F  + I P A   D  N FP +    + MG     G   P+EYGG 
Sbjct: 5   LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYE-EAVRPMGELGFFGTVIPEEYGGE 63

Query: 92  GL--GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           G+  G+L   I  EEI+R S ++ +        C   ++ +GS A K KY+PKL S E +
Sbjct: 64  GMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFL 123

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           G   ++EP+AGSDV+ M   A+     +++NG+K W +N   A  L+ YA TD  AGS+G
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRG 183

Query: 210 ITAFIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           ++AF+IE +  PG  T+  L+KLG   S T EL  +N  VP EN+LG+ G G
Sbjct: 184 LSAFVIEPRNFPGIKTS-NLEKLGSHASPTGELFLDNVKVPKENILGKPGDG 234

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score =  353 bits (908), Expect = e-121
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 6/242 (2%)

Query: 22  SAAFSSTSLLFDDT--QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNL 79
           +   S+T L    T       + +       I   AA  D+  +FP D   +  +    L
Sbjct: 8   ARQDSTTGLYAPVTPAGRVLLDRLAAHLPR-IRSTAAEHDRDGTFPTD--TFDALRKDGL 64

Query: 80  HGITAPQEYGGLGLGYLYH-CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138
            G T P E GGLG+  LY   +A+  ++RA  S  L+     +  +          ++ +
Sbjct: 65  MGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERAR 124

Query: 139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY 198
            L + I    V   A+           +        GG++++G K   +  PV    V+ 
Sbjct: 125 TLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVIN 184

Query: 199 AKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           A+TD   G   + + ++ +  PGF+     D LGMR S T ++VF++C +P ++VL ++ 
Sbjct: 185 ARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDP 244

Query: 259 KG 260
            G
Sbjct: 245 VG 246

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score =  345 bits (887), Expect = e-119
 Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 16/237 (6%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
                    + +       I+  AA+ D++ +FP +   ++      L G T P E GGL
Sbjct: 9   LTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVE--AFEQFAKLGLMGATVPAELGGL 65

Query: 92  GLGYLYH-CIAMEEISRASGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLIS 145
           GL  LY    A+  ++ A  S  L++       L +    +HG+P   A  ++ L  +  
Sbjct: 66  GLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAE 125

Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
           GE     A+ +          +  +D   GG++++G K+  +  P+A    V+A+     
Sbjct: 126 GEAAVCGALKDAPGVV----TELHSDG-AGGWLLSGRKVLVSMAPIATHFFVHAQRRDDD 180

Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL--GQEGKG 260
           GS  +   ++ +  PG +     D LGMR S T E+VF+ C V  + +L  G  G  
Sbjct: 181 GSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR 237

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score =  327 bits (841), Expect = e-112
 Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 2/229 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             +T     ++   FA + + P AA +D+ + FP      K MG   L  +  P+E GG 
Sbjct: 6   LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQ--VKKMGGLGLLAMDVPEELGGA 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL YL + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ +G 
Sbjct: 64  GLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGC 123

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +K I+
Sbjct: 124 FALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSIS 183

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G
Sbjct: 184 AFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score =  320 bits (822), Expect = e-109
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 8/216 (3%)

Query: 45  QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104
               + +  RAA  D S   P+D+     +G   L       E+GGLGLG   +      
Sbjct: 6   ALLTDLVGDRAAEWDTSGELPRDL--LVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAH 63

Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
           +     S+  S      +    + R G   Q+  +L +L SG+ + A+  SE  AGSD+ 
Sbjct: 64  VGSLCSSLR-SVMTSQGMAAWTVQRLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLS 121

Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
            M+ +        +++G+K+W T    A  LVV+   +  +G+      ++    PG   
Sbjct: 122 AMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRV 177

Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            +     G R +   +L  +   VP   VL   G  
Sbjct: 178 ERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGAS 213

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  317 bits (814), Expect = e-108
 Identities = 84/260 (32%), Positives = 133/260 (51%), Gaps = 6/260 (2%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M                +  +  + +       D ++  K SV +FA+E IAP  + +D+
Sbjct: 1   MHHH--HHHSSGVDLGTENLYFQSMAPLQTF-TDEEMMIKSSVKKFAQEQIAPLVSTMDE 57

Query: 61  SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120
           ++   + V   + +    L GI    EYGG G  +L   + +EE+++   SV +     +
Sbjct: 58  NSKMEKSV--IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQN 115

Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
            L    + +HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++N
Sbjct: 116 TLINTLIRKHGTEEQKATYLPQL-TTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLN 174

Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
           G+KMW ++   A   +V A  D   G KGIT+F++++  PG    +  +KLG+R S TC 
Sbjct: 175 GSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCP 234

Query: 241 LVFENCFVPNENVLGQEGKG 260
           L FEN  VP  N+LGQ G G
Sbjct: 235 LTFENVKVPEANILGQIGHG 254

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score =  315 bits (810), Expect = e-107
 Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 3/229 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             +  +  +E++   A + IAP AA +D+   FP++      + +     I  P+EYGG 
Sbjct: 19  LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA--LAALNSSGFSAIHVPEEYGGQ 76

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           G   +  CI +EE++R   S  L    +  L    L+  GS   K + LP + SGE + +
Sbjct: 77  GADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMAS 135

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SE  AGSD   M+ +A      +I+NG+K W TNG  +    V A TD   G+ GI+
Sbjct: 136 YALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGIS 195

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G
Sbjct: 196 AFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTG 244

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score =  314 bits (808), Expect = e-107
 Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 6/233 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
               + Q      +F +  +AP AA  D++ +FP D+   + +  F + G   P+ YGG 
Sbjct: 7   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDL--VRKLAEFGVFGALVPEAYGGA 64

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL        +E I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA
Sbjct: 65  GLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGA 124

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGS 207
             ++EP +GSD   +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   
Sbjct: 125 WGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKH 184

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +GI+AF   +   G    +K +KLG+  SDT +L+ E+ FVP E +LG+ GKG
Sbjct: 185 QGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKG 237

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score =  312 bits (803), Expect = e-106
 Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 7/231 (3%)

Query: 30  LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYG 89
           +     Q    ++V + ARE + P A   D+   +P      K +    L G+T P+E+G
Sbjct: 1   MTLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQ--LKALAELGLLGMTTPEEWG 58

Query: 90  GLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
           G+GL  +   +A+EE++ A  SV +     S L    L+R GS AQK +YL  L  GE +
Sbjct: 59  GVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWI 118

Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
           GA  ++EP AGSD   ++ +A RV GG+++NG K W T+   A   VV A+T+     KG
Sbjct: 119 GAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KG 173

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           I+AF++EKG PG S  +  +K+G+  + T E+  E  FVP EN+LG+EG+G
Sbjct: 174 ISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRG 224

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score =  311 bits (800), Expect = e-106
 Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 6/233 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             D Q  F +    F  + +AP     D    + +++     + +  + G    ++YGG 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKEL--IDELLSLGITGAYFEEKYGGS 62

Query: 92  GLG---YLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G      L + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  
Sbjct: 63  GDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTK 122

Query: 149 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +GA  ++EPNAG+D  G +  A +  DG Y +NG+K++ TNG  A   +V+A TD   G+
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGN 182

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            GITAFI+E G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+EGKG
Sbjct: 183 HGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKG 235

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score =  310 bits (797), Expect = e-105
 Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 3/229 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q +    +FA+E I P A   D+    P  V   + +    L     P+EYGG+
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPV--IEKLHEVGLLNAIIPEEYGGM 62

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   I  EE++ A   +  +    S+L I  ++  G+  QK+++L  L     + A
Sbjct: 63  GLKMLDEVIVGEELAYACMGIY-TIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAA 121

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   KG+ 
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVV 181

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+EG+G
Sbjct: 182 ALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEG 230

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score =  309 bits (793), Expect = e-105
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 5/233 (2%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
             LL      +  E   + A + + P     ++  ++P+ V  ++ +G   L  +  P+E
Sbjct: 12  DRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEE 69

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           +GG G  Y  +   +EEI+    SV ++   HS L  + L+  G+  QK ++LP ++SGE
Sbjct: 70  WGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGE 128

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +GA ++SEP AGSD   ++C A   DGGY+ING+K W T+G  A    ++A+T    GS
Sbjct: 129 QIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGS 186

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +G++ F++    PG S  +  +K+G+    T    ++N  +  +  +G+EG+G
Sbjct: 187 RGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQG 239

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score =  305 bits (784), Expect = e-103
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 5/235 (2%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
           T+    +    F+ +  +F  +   P   + ++    P+    W  MG          ++
Sbjct: 6   TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRS--FWAKMGENGFLCPWVDEK 63

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           YGGL   + Y  +  EE+ +  GS  +  G H+++    +  +G+  QK K+LPK ++GE
Sbjct: 64  YGGLNADFAYSVVINEELEKV-GSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGE 122

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            + A+AM+EP AGSD+  +   A +    YI+NG K + TNG  A  +VV  KTD +A  
Sbjct: 123 LITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKP 182

Query: 208 --KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             +GI+  ++E+  PGF+  +KL+K+G+   DT EL F++  VP  N+LG+EGKG
Sbjct: 183 PHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKG 237

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score =  305 bits (784), Expect = e-103
 Identities = 83/232 (35%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
           F + Q +F+ +  +FARE I P AA  D++  +P  +   +      L     P+  GGL
Sbjct: 16  FTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPL--IRRAWELGLMNTHIPENCGGL 73

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG    C+  EE++     V  +   +S L    ++  G+  QK KYL ++     + A
Sbjct: 74  GLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLMCA 132

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---GSK 208
             ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       +K
Sbjct: 133 YCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANK 192

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G
Sbjct: 193 AFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 244

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score =  304 bits (780), Expect = e-103
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
             +   +    +        +    +    F    IAP+ A  +     P+D+       
Sbjct: 13  ASEDGAARFVVAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAA 70

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPA 134
              L GI  P+E GG G   +   +  E I  A GS G+     ++ + +  +  +GS A
Sbjct: 71  EVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDA 130

Query: 135 QKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194
             ++Y+   ++G+ +G+L ++EP AGSDV  ++ +A R    Y++NG K + T+G  A  
Sbjct: 131 LIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADF 190

Query: 195 LVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
           +    +T    G  G++  +I+K  PGF  +++LDK+G R SDT EL F +  VP +N++
Sbjct: 191 VTTAVRTG-GPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLV 249

Query: 255 GQEGKG 260
           G E  G
Sbjct: 250 GAENSG 255

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score =  299 bits (768), Expect = e-101
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 4/233 (1%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
           S+     +   +++V  FA   + P A   +++   P++  L +      L G   P++ 
Sbjct: 23  SIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRE--LHRKAAELGLLGAGFPEDA 80

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGA-HSNLCINQLVRHGSPAQKDKYLPKLISGE 147
           GG G       +  EE+  A    G+        + +  ++  G     D Y+   + GE
Sbjct: 81  GGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGE 140

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +GALA++EP  GSDV  ++ +AD     Y+ING K + T+G  A  +V  A+T    G+
Sbjct: 141 KIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-GPGA 199

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
            G++  +++KG PGF   +KLDK+G R SDT EL + +  VP  N++G E  G
Sbjct: 200 GGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTG 252

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score =  297 bits (764), Expect = e-100
 Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 4/229 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
            ++ Q +F++    FA   +AP  A  DQ   FP DV   +        G+    + GG 
Sbjct: 19  LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDVGGS 76

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   +  E ++    S       H N+C   +   G+  Q+ K+ P L + E   +
Sbjct: 77  GLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFAS 135

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
             ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G KGI+
Sbjct: 136 YCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGIS 194

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G
Sbjct: 195 CIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQG 243

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score =  299 bits (768), Expect = 1e-98
 Identities = 88/263 (33%), Positives = 129/263 (49%), Gaps = 12/263 (4%)

Query: 1   MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQ 60
           M++ +G      SF   +      F  T   F        ++   F    + P    ++Q
Sbjct: 4   MEKTVGNAVKGGSFLVDEITIDQVF--TPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQ 61

Query: 61  SN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAH 119
                     L K  G   L G   P+EYGG+GL  +   +  E+ SRA G   +++GAH
Sbjct: 62  HEFDRSVR--LLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRA-GGFAITHGAH 118

Query: 120 SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--Y 177
             +    +V  G+  QK KYLP L +GE + A A++EP +GSD +G K  A     G  Y
Sbjct: 119 VGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHY 178

Query: 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD 237
           ++NG K W TN   A   +VYAK D     +  +AFI+EK   G ST+ +  K+G++ S 
Sbjct: 179 VLNGEKQWITNSAFADVFIVYAKID----GEHFSAFIVEKDYAGVSTSPEEKKMGIKCSS 234

Query: 238 TCELVFENCFVPNENVLGQEGKG 260
           T  L+ E+  VP EN+LG+ GKG
Sbjct: 235 TRTLILEDALVPKENLLGEIGKG 257

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score =  296 bits (761), Expect = 9e-98
 Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNS-FPQDVNLWKLMGNFNLHGITAPQEYGG 90
           FD++  +   +   F    + P    ++           L +  G   L  I  P+EYGG
Sbjct: 28  FDESVKEIARTTRTFVEREVLPLLERMEHGELELNVP--LMRKAGELGLLAIDVPEEYGG 85

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
           L L  +   +  EE+S  SG   ++YGAH+++    LV  G+  QK KYLPKL SGE + 
Sbjct: 86  LDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIA 144

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
           A  ++EP +GSD +  K +A   + G  YI+NG K W +N   A    V+AK D     +
Sbjct: 145 AYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GE 200

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             TAF++E+  PG S   +  K+G++ S T +++ E+  VP ENVLG+ GKG
Sbjct: 201 HFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKG 252

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score =  291 bits (748), Expect = 2e-95
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 34  DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGL 93
               +  E V +F  E   P  A  D      +    W+ +      G+  P E GG+GL
Sbjct: 52  QFLKELVEPVSRFFEEVNDP--AKNDALEMVEETT--WQGLKELGAFGLQVPSELGGVGL 107

Query: 94  GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
               +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  
Sbjct: 108 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 167

Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
           ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G  
Sbjct: 168 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227

Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
              ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G
Sbjct: 228 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSG 281

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score =  270 bits (694), Expect = 8e-90
 Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
              D +   +++   +A+  +APR     +  +      +++ MG   L G T P++YGG
Sbjct: 18  QLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAA--IFREMGEIGLLGPTIPEQYGG 75

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL Y+ + +   E+ R            S+L +  +   GS AQK+KYLPKL +GE +G
Sbjct: 76  PGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIG 135

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EPN GSD   M  +A +V GGY ++G+KMW TN P+A   VV+AK D + G   I
Sbjct: 136 CFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-EDGRDEI 194

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             FI+EKG  G S      K+G+R S T E+V +  FVP EN+L    KG
Sbjct: 195 RGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILP-HVKG 243

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score =  271 bits (696), Expect = 1e-89
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 32/260 (12%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANI----DQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
              +QL+ +     FA   +   +A      DQ + F      ++      L     P  
Sbjct: 6   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 65

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
            GG     ++  I +EE+     +  ++  A + L +  ++   SP+ ++K+L   ISGE
Sbjct: 66  LGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGE 124

Query: 148 H--VGALAMSEPNAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG-----PVAQTL 195
              + +L  SEPN  ++ +     G++  A +V   ++I+G K+W +N        A   
Sbjct: 125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLA 184

Query: 196 VVYAKTDIKA---------GSKGITAFIIEKGMPG------FSTAQKLDKLGMRGSDTCE 240
            V  +               +  I   ++ +          +    + +  G   +    
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH 244

Query: 241 LVFENCFVPNENVLGQEGKG 260
             F    VP+EN+L   G  
Sbjct: 245 TRFTEFHVPHENLLCTPGLK 264

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score =  265 bits (679), Expect = 4e-87
 Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 10/237 (4%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L    +   ++ V +   + +AP      +   FP    +   +G   + G +    YG 
Sbjct: 54  LLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFH--ITPKLGAMGVAGGSIK-GYGC 110

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            GL    + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V 
Sbjct: 111 PGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVA 170

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
             A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+      +  I
Sbjct: 171 CWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT---TTNQI 227

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
             FI++K  PG    +  +K+G+R     +++ +N FVP+E+ L     G NSF + 
Sbjct: 228 NGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLP----GVNSFQDT 280

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score =  263 bits (675), Expect = 2e-86
 Identities = 51/260 (19%), Positives = 85/260 (32%), Gaps = 35/260 (13%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNS-------FPQDVNLWKLMGNFNLHGITA 84
              +Q    ++    AR  + P      Q            Q    +    +  +     
Sbjct: 7   LSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPT--YAAAVSAGILKGQI 64

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
              +GG G   +   I +EE      S  L+  A   L +  +     P Q  ++L   +
Sbjct: 65  SPAHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPINLAAGP-QHAEFLAPFL 122

Query: 145 SGEH--VGALAMSEPNAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNGPVAQT--- 194
           SGE   + +L  SEP   ++ +     G +  A      ++ING KMW TN         
Sbjct: 123 SGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGC 182

Query: 195 -----LVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLDKLGMRGSDTCE 240
                +   A T ++ G       +I           G   F   + +   G        
Sbjct: 183 DLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPH 242

Query: 241 LVFENCFVPNENVLGQEGKG 260
           + + N  VP +NVL   G+G
Sbjct: 243 VRYTNVRVPTKNVLCPAGQG 262

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score =  260 bits (667), Expect = 9e-86
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 9/230 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L D  +     +V QF    + P      +S + P +  L K  GN  + G+     YG 
Sbjct: 25  LLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHLQ-GYGC 81

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G   + + +A  E+               +L +  + R+GS  QK+++LP+L +G+ +G
Sbjct: 82  AGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIG 141

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EP+ GS+  GM+ +A R    +I+NG KMW TNG +A    V+A+TD      GI
Sbjct: 142 CFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-----DGI 196

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             F++    PGF+  +   KL +R S T ELV +N  +P    L    +G
Sbjct: 197 RGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLP-LAEG 245

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score =  257 bits (659), Expect = 1e-84
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 8/231 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           L    + + +++  +F  +   P   +  +   FP    L          G T P EYGG
Sbjct: 10  LLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTH--LIPRFAELGFLGPTLPPEYGG 67

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+    + +   E+ R    +       S+L +  +  +GS  QK ++LPKL  GE VG
Sbjct: 68  AGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVG 127

Query: 151 ALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
              ++EP+ GSD  G MK +A R    +++NG KMW TNG +A   V++AK +       
Sbjct: 128 CFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE----GGE 183

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
           +  F++    PGF   +   K+ +R S T ELV E   VP    L  +  G
Sbjct: 184 VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLP-KALG 233

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score =  257 bits (660), Expect = 1e-84
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 8/230 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
           +    + + +++V    +  I P  A+  +    P    L   +G   L G+     YG 
Sbjct: 29  VLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP-ARELAVELGELGLLGMHLK-GYGC 86

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +A  E+      +        +L +  +   GS  QKD++LP + SG  +G
Sbjct: 87  AGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIG 146

Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
              ++EP+ GSD  GM+ +A R    +I+ G KMW TNG VA   VV+A+TD     +GI
Sbjct: 147 CFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-----EGI 201

Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
             F++    PGF+      K+ +R S T ELV +   +P+   L      
Sbjct: 202 RGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARL-PGATS 250

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score =  243 bits (623), Expect = 3e-79
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 13/239 (5%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
                ++  +++   + +E + PR    +++  F ++  +   MG   + G T  + YG 
Sbjct: 13  QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHRE--IISEMGELGVLGPT-IKGYGC 69

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +   E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129

Query: 151 ALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
              ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +      
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DG 185

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
            I  F++EKGM G S  +   K  +R S T  ++ +   VP ENVL     G +S G P
Sbjct: 186 CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLP----GASSLGGP 240

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score =  153 bits (388), Expect = 4e-44
 Identities = 40/226 (17%), Positives = 78/226 (34%), Gaps = 19/226 (8%)

Query: 33  DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG 92
           D + +   E + Q   + IA  A + +Q    P +    KL+    LH    P+ YGGL 
Sbjct: 34  DVSGVSMLEKIQQILPQ-IAKNAESAEQLRRVPDEN--IKLLKEIGLHRAFQPKVYGGLE 90

Query: 93  LGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
           +        +  ++ A      ++        +Q+       Q + +L            
Sbjct: 91  MSLPDFANCIVTLAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLK----------- 138

Query: 153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
                   S  +    K + V+GG I+NG+  W +    A+  +V        G+K  + 
Sbjct: 139 --DPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSF 196

Query: 213 FIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
            +I +    +          ++ S +  L   N F+P   +   + 
Sbjct: 197 GVIPR--SDYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKD 240

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score =  155 bits (393), Expect = 2e-43
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 20/190 (10%)

Query: 85  PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
            +EYG            M   +            H  + +  L+   +  Q++++     
Sbjct: 74  MREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAW 128

Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIING-----NKMWCTN-GPVAQTLV 196
           + E  G  A +E   G+ + G++  A  D     +I+N       K W    G  +   +
Sbjct: 129 NLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAI 188

Query: 197 VYAKTDIKAGSKGITAFII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 249
           V A+   +    G+ AF++        K +PG +      K G    D   L  +N  +P
Sbjct: 189 VLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIP 248

Query: 250 NENVLGQEGK 259
            EN+L +  +
Sbjct: 249 RENMLMKYAQ 258

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659

 Score =  142 bits (360), Expect = 7e-39
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA 170
                   H  + +  +   G+  Q+ K+L      + +G  A +E   GS+V G++  A
Sbjct: 94  DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 153

Query: 171 --DRVDGGYIINGNKMWCTN------GPVAQTLVVYAKTDIKAGSKGITAFIIE------ 216
             D     ++I+      +       G V+   VVYA+        GI  FI++      
Sbjct: 154 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 213

Query: 217 -KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK 259
              +P  +      K+G       D   L+F++  +P + +L +  K
Sbjct: 214 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSK 260

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score =  121 bits (305), Expect = 3e-32
 Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 18/208 (8%)

Query: 48  RENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107
              +  RA   +     P D    K +       +  P+++GG     +    A+ +I+ 
Sbjct: 20  LPTLRERAQETEDLRRIPDDS--MKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIAS 77

Query: 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK 167
           A GS G        +    L      AQ+D +      G              S      
Sbjct: 78  ACGSTGWVSSIIG-VHNWHLALFSQQAQEDVW------GNDTDVRI-------SSSYAPM 123

Query: 168 CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK 227
                VDGGY +NG   W +    A   V+              +F+I      +     
Sbjct: 124 GAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLI--PREDYRIDDV 181

Query: 228 LDKLGMRGSDTCELVFENCFVPNENVLG 255
            + +G+RG+ +  +V E+ FVP   VL 
Sbjct: 182 WNVVGLRGTGSNTVVVEDVFVPTHRVLS 209

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428

 Score =  119 bits (300), Expect = 3e-31
 Identities = 62/277 (22%), Positives = 101/277 (36%), Gaps = 56/277 (20%)

Query: 25  FSSTSLLFDDTQLQFKES---------VGQFARENIAPR-AANIDQSNSFPQDVNLW--- 71
           FS+     D T   F ++         V  F +++I P      +        V+ W   
Sbjct: 7   FSTVLPQIDTTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKP 66

Query: 72  ----------KLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN 121
                     K+ G +NL     P      GL ++ + +  EE        G  + A   
Sbjct: 67  LVIDKLKEMAKVEGLWNLF---LP---AVSGLSHVDYALIAEET-------GKCFFAP-- 111

Query: 122 LCIN----------QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKA 170
              N           L  +GS  QK ++L  L+ G       M+EP+ A SD   ++C  
Sbjct: 112 DVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSI 171

Query: 171 DRVDGGYIINGNKMWCTN--GPVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQ 226
            R +  Y+ING K W +    P  +  +V  +T   + S  K  +  ++    PG    +
Sbjct: 172 QRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIR 231

Query: 227 KLDKLGMRGSDT---CELVFENCFVPNENVLGQEGKG 260
            L   G   +      E+ F    VP  N++  EG+G
Sbjct: 232 PLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRG 268

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 42/200 (21%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 79  LHGITAPQEYGGLGLGYLYHCIAMEEISRASGS-----VGLSYGAHSNL---CINQLVRH 130
           +H +   ++             A   +     +     + +++ A   L           
Sbjct: 100 VHNLAWEEDARSGAFVARA---ARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDW 156

Query: 131 GSPAQKDKYLPKLISGEH----VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMW 185
            +P   D+Y   L+ G      +  + M+E   GSDV+    +A+R+ DG Y + G+K +
Sbjct: 157 TTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWF 216

Query: 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCE 240
            +  P +   +V A+T       G++ F + + +P          +  DKLG R + +CE
Sbjct: 217 FSV-PQSDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCE 270

Query: 241 LVFENCFVPNENVLGQEGKG 260
           + F++       +LG EG+G
Sbjct: 271 VEFQDAIG---WLLGLEGEG 287

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 38/242 (15%), Positives = 75/242 (30%), Gaps = 20/242 (8%)

Query: 16  TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMG 75
           +    H  +    +L F     +  + +   A E I  +A   +             L+ 
Sbjct: 3   SSHHHHHHSSGRENLYFQGMG-RVLDRIEVVAEE-IRGQAVQSEADCRLTDAA--AGLLR 58

Query: 76  NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQ 135
           +     +  P+ YGG  +        +  ++   G+ G   G    +   +L       Q
Sbjct: 59  DSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIV-GVHPWELAFADPQVQ 117

Query: 136 KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTL 195
           ++ +             +   P            A  VDGGY++ G   + +     Q  
Sbjct: 118 EEIWG----EDNDTWMASPYAPMG---------VATPVDGGYVLKGRWSFSSGTDHCQWA 164

Query: 196 VVYAKTDIKAGSKGI--TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253
            + A      G      +  +I             D +G+RG+ + +L+ +  FVP    
Sbjct: 165 FLGAMVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRT 224

Query: 254 LG 255
           L 
Sbjct: 225 LN 226

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515

 Score = 88.4 bits (218), Expect = 5e-20
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 16/151 (10%)

Query: 138 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCK------ADRVDGGYIINGNKMWCTNGPV 191
            +L  L   +    L   +P         + +       ++ D G I+NG K   T    
Sbjct: 137 NFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAF 196

Query: 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS--------TAQKLDKLGM--RGSDTCEL 241
              + +          + +    I    PG +             +              
Sbjct: 197 GDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTT 256

Query: 242 VFENCFVPNENVLGQEGKGCNSFGEPKIFNY 272
           VF+N F+P E V              +IF++
Sbjct: 257 VFDNVFIPWEQVFHIGNPEHAKLYPQRIFDW 287

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDK-------YLPKLISGEHVGALAMSEP--- 157
           A  ++G+   +   L    +    S     +       Y   L   +     A++ P   
Sbjct: 91  ADQNLGMMGRSPDYLNAVVMAYAASADYFGEFAENVRNYYRYLRDQDLATTHALTNPQVN 150

Query: 158 -----NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
                +   D         + + G ++ G +M  T     + L+  +        K   A
Sbjct: 151 RARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALA 210

Query: 213 FIIEKGMPGFSTAQKLDKLGMR-----------GSDTCELVFENCFVPNENV-LGQEGKG 260
           F +    PG     +   +G                 C ++F++  VP E V +    + 
Sbjct: 211 FALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVEL 270

Query: 261 CNSF 264
           CN+ 
Sbjct: 271 CNNA 274

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 22/186 (11%), Positives = 49/186 (26%), Gaps = 32/186 (17%)

Query: 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD--------KYLPKLISGEHVGAL 152
               + + + S                  +    +          +YL  +   + +   
Sbjct: 88  MQRLLGQKTASCFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQENDLIVDG 147

Query: 153 AMSEPNAGSDVVGMKCK--------ADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
           AM++P     +     K         ++ + G ++ G K   T    +   ++     + 
Sbjct: 148 AMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMT 207

Query: 205 AGSKG-ITAFIIEKGMPGFSTAQKLDKLGMR---------------GSDTCELVFENCFV 248
              K    +F       G            R               G     +VF+N F+
Sbjct: 208 EADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267

Query: 249 PNENVL 254
           PN+ + 
Sbjct: 268 PNDRIF 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 26/178 (14%), Positives = 46/178 (25%), Gaps = 53/178 (29%)

Query: 64  FPQDVN--------LWKLMGNFNLHGITA-----------PQEYGGLGLGYLYHCIAMEE 104
           FP   +        +W  +   ++  +             P+E            I +E 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-----TISIPSIYLEL 435

Query: 105 ISRASGSVGL------SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE-- 156
             +      L       Y        + L     P   D+Y    I G H+  +   E  
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDL----IPPYLDQYFYSHI-GHHLKNIEHPERM 490

Query: 157 ---PNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
                   D   ++ K        I + +  W  +G +  TL       +K     I 
Sbjct: 491 TLFRMVFLDFRFLEQK--------IRHDSTAWNASGSILNTL-----QQLKFYKPYIC 535

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	100.0
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	100.0
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	100.0
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	100.0
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	100.0
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	100.0
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	100.0
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	100.0
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	100.0
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	100.0
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	100.0
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	100.0
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	100.0
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	100.0
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	100.0
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	100.0
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	100.0
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	100.0
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	100.0
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	100.0
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	100.0
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	100.0
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	100.0
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	100.0
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	100.0
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	100.0
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	100.0
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	100.0
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	100.0
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	100.0
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	100.0
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	100.0
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	100.0
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.97
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.95
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	99.94
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	99.9
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	99.86
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	99.84
4g5e_A	517	2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct	99.56

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4e-45  Score=332.69  Aligned_cols=234  Identities=35%  Similarity=0.585  Sum_probs=213.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +.++++++ ++++.+++|+++.+.+.+.+.++.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+++.++|+++++
T Consensus        17 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~   93 (393)
T 3pfd_A           17 FQLPEEHI-ALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARV   93 (393)
T ss_dssp             -----CHH-HHHHHHHHHHHHHTGGGHHHHHHTTCCCH--HHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCchHHHHHhhhCCCCH--HHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhh
Confidence            46788999 99999999999999999888999999999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|. .+...+..+++++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+||
T Consensus        94 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  172 (393)
T 3pfd_A           94 DCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITN  172 (393)
T ss_dssp             CHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecC
Confidence            999887666555 5566788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +..||+++|+++.+++.+.+++++|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++.
T Consensus       173 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~  250 (393)
T 3pfd_A          173 GGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALA  250 (393)
T ss_dssp             TTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             CcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHH
Confidence            999999999999876544567899999999999999999999999999999999999999999999999999876543

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=100.00  E-value=2.5e-44  Score=326.78  Aligned_cols=235  Identities=36%  Similarity=0.613  Sum_probs=215.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus         5 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   81 (387)
T 2d29_A            5 FEEGAEER-QVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY   81 (387)
T ss_dssp             TSCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhcchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence            46789999 99999999999999888888888888999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||.+|+|+..++|++++++|||+|||+|.|+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  161 (387)
T 2d29_A           82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  161 (387)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence            99988766666335667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCC----CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          189 GPVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~----~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      +..||+++|+++.+++.    +.+++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus       162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  241 (387)
T 2d29_A          162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV  241 (387)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred             CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence            99999999999986432    44578999999999999998899999999999999999999999999999999888765


Q ss_pred             cC
Q 023999          265 GE  266 (274)
Q Consensus       265 ~~  266 (274)
                      +.
T Consensus       242 ~~  243 (387)
T 2d29_A          242 LR  243 (387)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=100.00  E-value=1.8e-44  Score=329.43  Aligned_cols=234  Identities=29%  Similarity=0.502  Sum_probs=217.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        24 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~  100 (403)
T 3p4t_A           24 IWTTAERE-ALRKTVRAFAEREVLPHAHEWERAGEIPR--ELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYA  100 (403)
T ss_dssp             TTSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence            35688999 99999999999999999888898899999  9999999999999999999999999999999999999999


Q ss_pred             cCcc-hhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          109 SGSV-GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       109 ~~~~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      ++++ ++.+..|...+...+..+|+++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  180 (403)
T 3p4t_A          101 GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYIT  180 (403)
T ss_dssp             TCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             CCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEec
Confidence            9998 776666654667788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      |+..||+++|+++.+++ +.+++++|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++.
T Consensus       181 ~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~  258 (403)
T 3p4t_A          181 SGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAA  258 (403)
T ss_dssp             TTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             CCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHHH
Confidence            99999999999998654 4567899999999999999999999999999999999999999999999999998876543

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=100.00  E-value=1.6e-44  Score=328.54  Aligned_cols=234  Identities=36%  Similarity=0.620  Sum_probs=214.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus         4 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   80 (391)
T 2vig_A            4 VELPETHQ-MLLQTCRDFAEKELFPIAAQVDKEHLFPA--AQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRG   80 (391)
T ss_dssp             --CCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCcccHHHHHhcCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhh
Confidence            46789999 99999999999999988888888889999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  160 (391)
T 2vig_A           81 CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITN  160 (391)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecC
Confidence            99888776666324567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      +..||+++|+++.+++++.+++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+.+
T Consensus       161 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~  237 (391)
T 2vig_A          161 AWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAM  237 (391)
T ss_dssp             TTTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHH
T ss_pred             CCcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHH
Confidence            99999999999976543455789999999999999999999999999999999999999999999999999887654

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=100.00  E-value=1.6e-44  Score=329.67  Aligned_cols=235  Identities=28%  Similarity=0.479  Sum_probs=217.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+...+.++.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        27 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~  103 (403)
T 3r7k_A           27 AWTTPERR-ALSQMARSFVEREIAPKLAEWEHVGEIPR--DLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA  103 (403)
T ss_dssp             GGGCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCT--HHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence            45789999 99999999999999999888888899999  9999999999999999999999999999999999999998


Q ss_pred             -cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          109 -SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       109 -~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                       ++++++.+..+...+...|..+|+++||++|++++++|+.+++++++||++|+|+..++|++++++|||+|||+|.|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs  183 (403)
T 3r7k_A          104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT  183 (403)
T ss_dssp             TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred             CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence             8887766654444677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      |+..||+++|+++.+++ +.+++.+|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++..
T Consensus       184 ~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~  262 (403)
T 3r7k_A          184 SGVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQ  262 (403)
T ss_dssp             TTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred             CCccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHH
Confidence            99999999999998654 45578999999999999999999999999999999999999999999999999998766543

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.7e-44  Score=327.06  Aligned_cols=233  Identities=35%  Similarity=0.551  Sum_probs=215.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~  109 (274)
                      .++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++++
T Consensus         4 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~   80 (379)
T 1ukw_A            4 SLTEEQR-QLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC   80 (379)
T ss_dssp             CCCHHHH-HHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence            5789999 99999999999999888878888888999  99999999999999999999999999999999999999999


Q ss_pred             CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (274)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~  189 (274)
                      +++++.+..|. .+...|..+|+++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+||+
T Consensus        81 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  159 (379)
T 1ukw_A           81 MGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG  159 (379)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence            99887776664 67778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      ..||+++|+++.+++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.++.|+.+.+.
T Consensus       160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~  236 (379)
T 1ukw_A          160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQ  236 (379)
T ss_dssp             TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred             CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHH
Confidence            99999999999764434457899999999999999999999999999999999999999999999999988876543

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4.8e-44  Score=324.89  Aligned_cols=233  Identities=30%  Similarity=0.588  Sum_probs=217.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|.  ++|+.|++.||+++.+|++|||.|+++.+++.++|+++++
T Consensus        14 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~   90 (387)
T 3nf4_A           14 LLPSQEAA-ELIELTREIADKVLDPIVDRHEKDETYPE--GVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAAR   90 (387)
T ss_dssp             CCSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCT--THHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred             ccCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHh
Confidence            45789999 99999999999999999888899999999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|. .+...+..+++++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus        91 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (387)
T 3nf4_A           91 WASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITH  169 (387)
T ss_dssp             CHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccC
Confidence            999988777776 6777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      +..||+++|+++.+  ++.+++.+|+||+++|||++.+.|+++|+++++++++.|+||+||+++++|.+++|+.+.+..
T Consensus       170 ~~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~  246 (387)
T 3nf4_A          170 GGKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSA  246 (387)
T ss_dssp             TTTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred             CcccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHH
Confidence            99999999999976  245578999999999999999999999999999999999999999999999999998776543

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=3.1e-44  Score=325.68  Aligned_cols=235  Identities=37%  Similarity=0.623  Sum_probs=216.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC---CCHHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG---LGYLYHCIAMEEI  105 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g---~~~~~~~~v~e~l  105 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|++|.+.||+++.+|++|||.|   +++.+.+.++|++
T Consensus         3 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel   79 (383)
T 1buc_A            3 FNLTDIQQ-DFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEEL   79 (383)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHH
Confidence            35789999 99999999999999998888888889999  999999999999999999999999   9999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEee
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKM  184 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~  184 (274)
                      +++++++++.+..|...+...+..+|+++||++|++++++|+.++++++|||++|+|+..++|+|+++ +|||+|||+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~  159 (383)
T 1buc_A           80 AKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKI  159 (383)
T ss_dssp             HHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEE
T ss_pred             HhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEe
Confidence            99999988777666435677888999999999999999999999999999999999999999999999 99999999999


Q ss_pred             cccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       185 ~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      |+||+..||+++|+++.+++.+.+++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus       160 ~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~  239 (383)
T 1buc_A          160 FITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIA  239 (383)
T ss_dssp             EEETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHH
T ss_pred             ccCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHH
Confidence            99999999999999998654455679999999999999998899999999999999999999999999999999888765


Q ss_pred             cC
Q 023999          265 GE  266 (274)
Q Consensus       265 ~~  266 (274)
                      +.
T Consensus       240 ~~  241 (383)
T 1buc_A          240 MM  241 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=100.00  E-value=3e-44  Score=328.06  Aligned_cols=235  Identities=34%  Similarity=0.601  Sum_probs=214.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ...++++++ ++++.+++|+++.+.|...+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus        26 ~~~~~~e~~-~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~  102 (404)
T 2jif_A           26 LQTFTDEEM-MIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAK  102 (404)
T ss_dssp             TTCCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHT
T ss_pred             cCCCCHHHH-HHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHh
Confidence            356899999 99999999999999988778888888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +++++++.+..|...+..+|..+|+++||++|+|++++|. ++++++|||++|+|...++|+|++++|||+|||+|.|+|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is  181 (404)
T 2jif_A          103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWIS  181 (404)
T ss_dssp             TCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeec
Confidence            9999887776665455677889999999999999999986 789999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      |+..||+++|+|+++++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.+++|+.+.+.
T Consensus       182 ~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~  260 (404)
T 2jif_A          182 SAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIG  260 (404)
T ss_dssp             TTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred             CCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHH
Confidence            9999999999999764434457899999999999999999999999999999999999999999999999998876543

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=100.00  E-value=5.4e-44  Score=324.38  Aligned_cols=234  Identities=32%  Similarity=0.603  Sum_probs=213.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      +..++++++ ++++++++|+.+.+.+.+.+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus         7 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~   83 (385)
T 2pg0_A            7 ARYLREEHH-MFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEK   83 (385)
T ss_dssp             CTTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHh
Confidence            456899999 99999999999999998888888889998  999999999999999999999999999999999999999


Q ss_pred             hc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecc
Q 023999          108 AS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC  186 (274)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v  186 (274)
                      ++ +++++.+  |...+...+..+++++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+
T Consensus        84 ~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~  161 (385)
T 2pg0_A           84 VGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFI  161 (385)
T ss_dssp             HCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred             hCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecc
Confidence            99 8877654  43345677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          187 TNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       187 s~~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      ||+..||+++|+++.+++  ++.+++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+.
T Consensus       162 s~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~  241 (385)
T 2pg0_A          162 TNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYL  241 (385)
T ss_dssp             TTTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHH
T ss_pred             cCCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHH
Confidence            999999999999997643  234478999999999999998889999999999999999999999999999999988765


Q ss_pred             cC
Q 023999          265 GE  266 (274)
Q Consensus       265 ~~  266 (274)
                      +.
T Consensus       242 ~~  243 (385)
T 2pg0_A          242 ME  243 (385)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=5.8e-44  Score=325.12  Aligned_cols=237  Identities=63%  Similarity=1.054  Sum_probs=216.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|...++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        11 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~   89 (394)
T 1ivh_A           11 NGLSEEQR-QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRA   89 (394)
T ss_dssp             GTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhh
Confidence            46889999 99999999999999988777888888876558999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  169 (394)
T 1ivh_A           90 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN  169 (394)
T ss_dssp             CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             chhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCC
Confidence            99988877766435667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          189 GPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +..||+++|+++.+++  ++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.+.
T Consensus       170 ~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~  249 (394)
T 1ivh_A          170 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMS  249 (394)
T ss_dssp             GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred             CCcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHH
Confidence            9999999999997643  23357889999999999999999999999999999999999999999999999999876543

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1e-43  Score=321.16  Aligned_cols=228  Identities=38%  Similarity=0.651  Sum_probs=211.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~  109 (274)
                      .++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++++
T Consensus         2 ~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~   78 (372)
T 2dvl_A            2 TLTQEQR-LVLDAVRRVAREVLYPLAPEYDRKAEYPW--PQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAAD   78 (372)
T ss_dssp             -CCHHHH-HHHHHHHHHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence            4788999 99999999999888888777888888999  99999999999999999999999999999999999999999


Q ss_pred             CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (274)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~  189 (274)
                      +++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+||+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~  158 (372)
T 2dvl_A           79 PSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSA  158 (372)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             cHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCC
Confidence            99887777663356778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      ..||+++|+++.++     ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.+
T Consensus       159 ~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  229 (372)
T 2dvl_A          159 GHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYAL  229 (372)
T ss_dssp             TTCSEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred             CcCCEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHH
Confidence            99999999999753     688999999999999999999999999999999999999999999999998886544

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=100.00  E-value=1.2e-43  Score=323.23  Aligned_cols=234  Identities=35%  Similarity=0.547  Sum_probs=214.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        14 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~   90 (396)
T 1egd_A           14 FEFTEQQK-EFQATARKFAREEIIPVAAEYDKTGEYPV--PLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG   90 (396)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence            46889999 99999999999988888878888888998  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+ .|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus        91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~  169 (396)
T 1egd_A           91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN  169 (396)
T ss_dssp             CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence            99988766 55445566688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCC---CCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          189 GPVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~---~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      +..||+++|+++.+++.+.   +++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.++.|+.+.+
T Consensus       170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~  249 (396)
T 1egd_A          170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM  249 (396)
T ss_dssp             TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred             CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence            9999999999998654333   5788999999999999989999999999999999999999999999999998887654


Q ss_pred             C
Q 023999          266 E  266 (274)
Q Consensus       266 ~  266 (274)
                      .
T Consensus       250 ~  250 (396)
T 1egd_A          250 G  250 (396)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=1.8e-43  Score=321.75  Aligned_cols=234  Identities=28%  Similarity=0.492  Sum_probs=215.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        17 ~~~~~e~~-~~~~~~r~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~   93 (393)
T 1rx0_A           17 MGLNEEQK-EFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATG   93 (393)
T ss_dssp             TTCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence            45889999 99999999999999888878888888999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|. .+...+..+|+++||++|++++++|+.++++++|||++|+|+..+.|+|++++|||+|||+|.|+||
T Consensus        94 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~  172 (393)
T 1rx0_A           94 CTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISG  172 (393)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecC
Confidence            998887776665 6677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP  267 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~  267 (274)
                      +..||+++|+++.++ ++.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||.+++|+.+.+..
T Consensus       173 a~~Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~  250 (393)
T 1rx0_A          173 AGESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRG  250 (393)
T ss_dssp             TTTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHH
T ss_pred             CccCCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHH
Confidence            999999999999753 344578999999999999999899999999999999999999999999999999888765543

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=100.00  E-value=4.6e-44  Score=326.00  Aligned_cols=233  Identities=37%  Similarity=0.630  Sum_probs=207.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +.++++++ ++++++++|+.+.+.+.+.+.++.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus        17 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~   93 (396)
T 3ii9_A           17 QQLADDER-MVRDAAHAYAQGKLAPRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERV   93 (396)
T ss_dssp             GGSCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence            46899999 99999999998988888888888899999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  173 (396)
T 3ii9_A           94 DSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITN  173 (396)
T ss_dssp             CHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECC
Confidence            99888777666434556788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +..||+++|+++.++ ++.+++.+|+||+++|||++.+.|+++|++++++++|.|+||+||++++++. ++|+.+...
T Consensus       174 a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~  249 (396)
T 3ii9_A          174 SPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFT  249 (396)
T ss_dssp             GGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHH
T ss_pred             CccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHH
Confidence            999999999999862 2344688999999999999999999999999999999999999999999976 778765543

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.4e-43  Score=318.74  Aligned_cols=227  Identities=29%  Similarity=0.530  Sum_probs=212.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ..++++++ ++++++++|+.+.+.+.+.+.++.+.+| .  ++|+.|.+.||+++.+ ++|||.|+++.+++.++|++++
T Consensus        28 ~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela~  103 (403)
T 3sf6_A           28 AVLSAEER-EIRDTVRSVVQRRIKPHIASWYEDGELPAR--ELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELEA  103 (403)
T ss_dssp             GGSCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCHH--HHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhcChhHHHHHhcCCCCHH--HHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHHH
Confidence            46789999 9999999999999999888888889999 8  9999999999999999 9999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +++++++.+..|...+...+..+|+++||++|++++++|++++++++|||++|+|+..++|+|++++|||+|||+|.|+|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is  183 (403)
T 3sf6_A          104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWIT  183 (403)
T ss_dssp             HCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             hcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeec
Confidence            99998877766654567788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG  265 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~  265 (274)
                      |+..||+++|+|+.++     ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. ++|+.+.+
T Consensus       184 ~a~~Ad~~~v~ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~  255 (403)
T 3sf6_A          184 NGSVADVAVVWARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPL  255 (403)
T ss_dssp             TGGGCSEEEEEEEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHH
T ss_pred             CCcccCEEEEEEEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHH
Confidence            9999999999999753     688999999999999999999999999999999999999999999998 88876654

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=100.00  E-value=1.1e-43  Score=323.59  Aligned_cols=233  Identities=38%  Similarity=0.653  Sum_probs=216.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCC--CHHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGL--GYLYHCIAMEEI  105 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~--~~~~~~~v~e~l  105 (274)
                      +.++++|+ ++++++++|+.+.+.+.+.+.|+.+.+| .  ++|+.|.+.||+++.+|++|||.|+  ++.+.+.++|++
T Consensus         3 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eel   79 (397)
T 3mpi_A            3 FNLSKELQ-MLQKEVRNFVNKKIVPFADQWDNENHFPYE--EAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEI   79 (397)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCTT--TTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCHH--HHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHH
Confidence            46899999 9999999999999999988889889999 8  9999999999999999999999999  999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHH-HHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEee
Q 023999          106 SRASGSVGLSYGAHSNLCIN-QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM  184 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~  184 (274)
                      +++++++++.+..|. .+.. .+..+++++||++|++++++|++++++++|||.+|+|+..+.|+|++++|||+|||+|.
T Consensus        80 a~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~  158 (397)
T 3mpi_A           80 ARGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKT  158 (397)
T ss_dssp             HHHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEE
T ss_pred             HhhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEE
Confidence            999999888777664 4455 88899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEeCCCCCCCCeEEEEE-eCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999          185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFII-EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS  263 (274)
Q Consensus       185 ~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv-~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~  263 (274)
                      |+||+..||+++|+++.+++++.+++.+|+| |++.|||++ ++|+++|++++++++|.|+||+||+++++|.+++|+.+
T Consensus       159 ~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~  237 (397)
T 3mpi_A          159 WISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARI  237 (397)
T ss_dssp             EEETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred             eeCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHH
Confidence            9999999999999999866545567899999 999999999 99999999999999999999999999999999999876


Q ss_pred             ccC
Q 023999          264 FGE  266 (274)
Q Consensus       264 ~~~  266 (274)
                      ...
T Consensus       238 ~~~  240 (397)
T 3mpi_A          238 VFG  240 (397)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=100.00  E-value=6e-43  Score=318.93  Aligned_cols=228  Identities=31%  Similarity=0.528  Sum_probs=211.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|.  ++|+.+++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus        24 ~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~   99 (399)
T 3swo_A           24 RLLDQDER-DIAATVRQFVDTRLKPNVEGWFESATLPS--ELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAG   99 (399)
T ss_dssp             GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--THHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHh
Confidence            36789999 99999999999999888888888889999  9999999999999999 99999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|++|
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  179 (399)
T 3swo_A          100 DSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN  179 (399)
T ss_dssp             CHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             CccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECC
Confidence            99987776666446677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +..||+++|+++.++     ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|. ++|+.+...
T Consensus       180 a~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~  251 (399)
T 3swo_A          180 GNLADVATVWAQTDD-----GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLS  251 (399)
T ss_dssp             TTTCSEEEEEEBCTT-----SCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHH
T ss_pred             CCccCEEEEEEEeCC-----ceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHH
Confidence            999999999998752     588999999999999999999999999999999999999999999998 888866543

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=100.00  E-value=1e-42  Score=315.98  Aligned_cols=230  Identities=30%  Similarity=0.506  Sum_probs=208.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +.++++++ ++++.+++|+.+.+.+...+.++.+.+|.  ++|+++.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus         9 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~   85 (385)
T 2eba_A            9 DLLTPEEK-EVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERV   85 (385)
T ss_dssp             GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHTTCCCG--GGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCCccHHHHHHhCCCCH--HHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHh
Confidence            45788999 99999999999999888888888888999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCC-CCceEEEEEeCCeEEEeeEeeccc
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV-VGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      ++++++.+..|...+...|..+|+++||++|++++++|++++++++|||++|+|+ ..++|++++++|||+|||+|.|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s  165 (385)
T 2eba_A           86 DSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWIT  165 (385)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEE
T ss_pred             CchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccC
Confidence            9998877776654456678889999999999999999999999999999999999 899999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      |+..||+++|+++.++  + + +.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++ .+++|+.+...
T Consensus       166 ~~~~Ad~~~v~a~~~~--g-~-~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~  239 (385)
T 2eba_A          166 NGNLAHLAVIWAKDEG--G-E-VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLS  239 (385)
T ss_dssp             TTTTCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHH
T ss_pred             CCcccCEEEEEEEeCC--C-c-EEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHH
Confidence            9999999999999752  2 2 889999999999999999999999999999999999999999999 77888765543

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=2.7e-42  Score=316.09  Aligned_cols=235  Identities=21%  Similarity=0.261  Sum_probs=203.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC------------------CCCCcHHHHHHHHhcCCcCCCCCccCCC
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSN------------------SFPQDVNLWKLMGNFNLHGITAPQEYGG   90 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~G~~~l~vPe~~GG   90 (274)
                      +.++++++ ++++++++|+.+.+.|...+.++.+                  .+|.  ++|+.+.+.||+++.+|++|||
T Consensus         7 ~~~~~~~~-~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~e~G~~~~~~P~~~GG   83 (415)
T 4hr3_A            7 FAPSARAA-ELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELD--SLKAKARAAGLWNLFLPDPELG   83 (415)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHH--HHHHHHHHTTCSSTTCCCTTTS
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHH--HHHHHHHhCCCcCcCCCHHHCC
Confidence            46889999 9999999999998877765554332                  1345  8999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCcchhh-hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceE
Q 023999           91 LGLGYLYHCIAMEEISRASGSVGLS-YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKC  168 (274)
Q Consensus        91 ~g~~~~~~~~v~e~lg~~~~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~  168 (274)
                      .|+++.+.+.++|++++++.+..+. ...+...+...|..+++++||++|++++++|+.++++++|||+ +|+|+..++|
T Consensus        84 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t  163 (415)
T 4hr3_A           84 GGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAA  163 (415)
T ss_dssp             CCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCC
T ss_pred             CCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCee
Confidence            9999999999999999987543322 2222223346788999999999999999999999999999999 9999999999


Q ss_pred             EEEEeCCeEEEeeEeecccCCCC--CCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCc--eeeEEe
Q 023999          169 KADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD--TCELVF  243 (274)
Q Consensus       169 ~a~~~~~g~~l~G~k~~vs~~~~--a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~--~~~v~f  243 (274)
                      +|++++|||+|||+|.|+||+.+  ||+++|+++.+++. +.+++++|+||++.|||++.++|+++|+++++  +++|.|
T Consensus       164 ~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~f  243 (415)
T 4hr3_A          164 TAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSF  243 (415)
T ss_dssp             EEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEE
T ss_pred             EEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEE
Confidence            99999999999999999999966  99999999986542 34579999999999999998999999999987  999999


Q ss_pred             ceeeeCCCCcccCCCcccccccC
Q 023999          244 ENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       244 ~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      +||+||++++||.+++|+.+++.
T Consensus       244 ddv~Vp~~~~lg~~~~g~~~~~~  266 (415)
T 4hr3_A          244 DNVRLPADAFIAGPGKGFEIAQG  266 (415)
T ss_dssp             EEEEEEGGGBSSCTTCHHHHHHH
T ss_pred             ccEEECHHHcCCCCCchHHHHHH
Confidence            99999999999999999876543

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=100.00  E-value=4.6e-42  Score=309.75  Aligned_cols=216  Identities=23%  Similarity=0.355  Sum_probs=198.7

Q ss_pred             HHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhh
Q 023999           41 ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS  120 (274)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~  120 (274)
                      +++++|+.+.+.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++++++++.+..|.
T Consensus         2 ~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~   79 (366)
T 1r2j_A            2 PERDALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG   79 (366)
T ss_dssp             -CCHHHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccccHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            56789999999988888888888999  9999999999999999999999999999999999999999999887776664


Q ss_pred             HHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEE
Q 023999          121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK  200 (274)
Q Consensus       121 ~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~  200 (274)
                      ..+...|. +|+++||++|++++++|+ +.++++|||.+|+|+..++|++++++|||+|||+|.|+||+..||+++|+++
T Consensus        80 ~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~  157 (366)
T 1r2j_A           80 MAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL  157 (366)
T ss_dssp             HHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEB
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEE
Confidence            35566777 999999999999999999 9999999999999999999999999999999999999999999999999998


Q ss_pred             eCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          201 TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       201 ~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      .++  +  ++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus       158 ~~~--~--g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~  217 (366)
T 1r2j_A          158 QED--G--SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPML  217 (366)
T ss_dssp             CSS--S--CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTT
T ss_pred             eCC--C--ceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHH
Confidence            753  2  68899999999999999999999999999999999999999999999999998766

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=100.00  E-value=7e-42  Score=315.07  Aligned_cols=227  Identities=30%  Similarity=0.519  Sum_probs=206.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999           30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS  109 (274)
Q Consensus        30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~  109 (274)
                      .++++++ ++++++++|+++.+.+...+.++.+.+|.  ++|+.|.++||+++.+| +|||.|+++.+.+.++|++++++
T Consensus        54 ~l~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~  129 (436)
T 2ix5_A           54 LLTPEEQ-AIRKKVRECMEKEVAPIMTEYWEKAEFPF--HITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVD  129 (436)
T ss_dssp             GSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCG--GGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHH-HHHHHHHHHHHhhCChhhHHHHhcCCCCH--HHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhC
Confidence            5789999 99999999999998888777677778999  99999999999999999 99999999999999999999999


Q ss_pred             CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999          110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG  189 (274)
Q Consensus       110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~  189 (274)
                      +++++.+..|..++...|..+|+++||++|++++++|+.++++++|||++|+|...++|+|++++|||+|||+|.|++|+
T Consensus       130 ~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a  209 (436)
T 2ix5_A          130 ASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNS  209 (436)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred             ccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCC
Confidence            99876666564356677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999          190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF  264 (274)
Q Consensus       190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~  264 (274)
                      ..||+++|+|+.+++   .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.. +|+..+
T Consensus       210 ~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~  280 (436)
T 2ix5_A          210 TFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDT  280 (436)
T ss_dssp             TTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHH
T ss_pred             cccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHH
Confidence            999999999997532   36889999999999999999999999999999999999999999999865 455543

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=100.00  E-value=4.3e-42  Score=326.83  Aligned_cols=236  Identities=34%  Similarity=0.559  Sum_probs=207.6

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC-CCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHH
Q 023999           23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIA  101 (274)
Q Consensus        23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v  101 (274)
                      ..+.++..++++|+ ++++.+++|+.+.+.|...+.++.+ .+|.  ++|+.+.++||+++.+|++|||.|+++.+.+.+
T Consensus        25 ~~~~~p~~lt~eq~-~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~--~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v  101 (597)
T 3owa_A           25 DQVFTPEDFSSEHK-MIAKTTEDFIVNEVLPELEYLEQHEFDRSV--RLLKEAGELGLLGADVPEEYGGIGLDKVSSALI  101 (597)
T ss_dssp             GGCCCGGGCCHHHH-HHHHHHHHHHHHHTGGGHHHHTTTCHHHHH--HHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHH
T ss_pred             hhcCCccCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCcCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHH
Confidence            33444567899999 9999999999999988877777654 4667  999999999999999999999999999999999


Q ss_pred             HHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEE
Q 023999          102 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYII  179 (274)
Q Consensus       102 ~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l  179 (274)
                      +|++++++.+ +..+..|...+...+..+|+++||++|+|++++|++++++++|||++|+|..+++|+|++++  ++|+|
T Consensus       102 ~Eel~~~~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvL  180 (597)
T 3owa_A          102 AEKFSRAGGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVL  180 (597)
T ss_dssp             HHHHGGGTHH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEE
T ss_pred             HHHHHccchH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            9999998643 33344444344456788999999999999999999999999999999999999999999864  45999


Q ss_pred             eeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023999          180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK  259 (274)
Q Consensus       180 ~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~  259 (274)
                      ||+|.|+||+..||+++|+|+.++    +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.+++
T Consensus       181 nG~K~~is~a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~  256 (597)
T 3owa_A          181 NGEKQWITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGK  256 (597)
T ss_dssp             EEEEEEEETTTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC
T ss_pred             eeEEEEeCCCccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccc
Confidence            999999999999999999999864    3789999999999999999999999999999999999999999999999999


Q ss_pred             ccccccC
Q 023999          260 GCNSFGE  266 (274)
Q Consensus       260 g~~~~~~  266 (274)
                      |+.+...
T Consensus       257 G~~~~~~  263 (597)
T 3owa_A          257 GHIIAFN  263 (597)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            9876543

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=100.00  E-value=9.9e-41  Score=303.60  Aligned_cols=226  Identities=29%  Similarity=0.520  Sum_probs=205.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..++++++ ++++++++|+.+.+.+...+.++.+.+|.  ++|+.|++.||+++.+ ++|||.|+++.+++.++|+++++
T Consensus        12 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~   87 (392)
T 1siq_A           12 EQLTTDEI-LIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERV   87 (392)
T ss_dssp             GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHh
Confidence            35789999 99999999999988888777778888999  9999999999999999 99999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEeecc
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWC  186 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~~v  186 (274)
                      ++++++.+..+...+...+..+|+++||++|++++++|++++++++|||++|+|+..++|+|+++  +|||+|||+|.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~v  167 (392)
T 1siq_A           88 DSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWI  167 (392)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEee
Confidence            99877655555434456788899999999999999999999999999999999999999999999  9999999999999


Q ss_pred             cCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999          187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS  263 (274)
Q Consensus       187 s~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~  263 (274)
                      ||+..||+++|+++.++    .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++.. +|+..
T Consensus       168 s~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~  239 (392)
T 1siq_A          168 TNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGG  239 (392)
T ss_dssp             ETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHH
T ss_pred             cCCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-cCHHH
Confidence            99999999999999853    24789999999999999999999999999999999999999999999875 46654

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=7.5e-41  Score=317.92  Aligned_cols=232  Identities=33%  Similarity=0.572  Sum_probs=205.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhcc-CCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQS-NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      +...+++|++ ++++.+++|+.+.+.+...+.+.. ..+|.  ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++
T Consensus        24 ~~~~~~~e~~-~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel  100 (577)
T 2z1q_A           24 TPEDFDESVK-EIARTTRTFVEREVLPLLERMEHGELELNV--PLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL  100 (577)
T ss_dssp             CGGGCCHHHH-HHHHHHHHHHHTTTHHHHHHHHTTCGGGHH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHhccCchhHHhhhcccCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence            3456789998 999999999998887774444322 25677  9999999999999999999999999999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEe
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNK  183 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k  183 (274)
                       .+++++++.+..|...+...|..+|+++||++|+|++++|++++++++|||++|+|...+.|+|+++  +++|+|||+|
T Consensus       101 -~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K  179 (577)
T 2z1q_A          101 -SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVK  179 (577)
T ss_dssp             -TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEE
T ss_pred             -hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEe
Confidence             7788887766666434456788999999999999999999999999999999999999999999984  4579999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS  263 (274)
Q Consensus       184 ~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~  263 (274)
                      .|+||+..||+++|+|+.++    +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.+++|+.+
T Consensus       180 ~~it~a~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~  255 (577)
T 2z1q_A          180 QWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKI  255 (577)
T ss_dssp             EEEETTTTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHH
T ss_pred             eCCCCCCccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHH
Confidence            99999999999999999752    47899999999999999999999999999999999999999999999999999876


Q ss_pred             ccC
Q 023999          264 FGE  266 (274)
Q Consensus       264 ~~~  266 (274)
                      .++
T Consensus       256 ~~~  258 (577)
T 2z1q_A          256 AFN  258 (577)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=100.00  E-value=1.3e-40  Score=307.08  Aligned_cols=235  Identities=20%  Similarity=0.301  Sum_probs=206.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhcc----CCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQS----NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~  104 (274)
                      ..+++++. ++++.+++|+++.+.+...+.++.    +.+|...++|+++.+.||+++.+|++|||.|+++.+.+.++|+
T Consensus         4 ~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee   82 (439)
T 2c12_A            4 FKLSPSQL-EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEE   82 (439)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence            45789999 999999999999988876555443    2344112899999999999999999999999999999999999


Q ss_pred             HHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh--cCCceEEEEeeCCCCCC-----CCCCceEEEEEeCCeE
Q 023999          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI--SGEHVGALAMSEPNAGS-----DVVGMKCKADRVDGGY  177 (274)
Q Consensus       105 lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~--~G~~~~~~a~te~~~g~-----d~~~~~~~a~~~~~g~  177 (274)
                      ++++++++++.+..|. .+...+..+|+++||++|+++++  +|++++++++|||++|+     |...++|+|++++|||
T Consensus        83 la~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~  161 (439)
T 2c12_A           83 LFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW  161 (439)
T ss_dssp             HHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEE
T ss_pred             HHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEE
Confidence            9999999988776665 55667889999999999999999  69999999999999987     5778889999999999


Q ss_pred             EEeeEeecccCCC-----CCCEEEEEEEe-C----CC----CCCCCeEEEEEeCCCC------CeEEeccCcccCCCCCc
Q 023999          178 IINGNKMWCTNGP-----VAQTLVVYAKT-D----IK----AGSKGITAFIIEKGMP------GFSTAQKLDKLGMRGSD  237 (274)
Q Consensus       178 ~l~G~k~~vs~~~-----~a~~~lv~a~~-~----~~----~~~~~~~~~lv~~~~~------gv~~~~~~~~~Gl~~~~  237 (274)
                      +|||+|.|+||+.     .||+++|+++. +    ++    ++.+++++|+||++.|      |+++.++|+++|+++++
T Consensus       162 ~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~  241 (439)
T 2c12_A          162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTS  241 (439)
T ss_dssp             EEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCC
T ss_pred             EEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCC
Confidence            9999999999997     99999999998 5    22    2334789999999998      88898999999999999


Q ss_pred             eeeEEeceeeeCCCCcccCCCcccc-ccc
Q 023999          238 TCELVFENCFVPNENVLGQEGKGCN-SFG  265 (274)
Q Consensus       238 ~~~v~f~~v~Vp~~~llg~~g~g~~-~~~  265 (274)
                      +++|.|+||+||++++||.+++|+. +++
T Consensus       242 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~  270 (439)
T 2c12_A          242 GPHTRFTEFHVPHENLLCTPGLKAQGLVE  270 (439)
T ss_dssp             CCEEEEEEEEEEGGGBCSCTTHHHHHHHH
T ss_pred             ceEEEEccEEecHHHcCCCCCccHHHHHH
Confidence            9999999999999999999998887 543

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=100.00  E-value=9e-41  Score=308.01  Aligned_cols=236  Identities=20%  Similarity=0.277  Sum_probs=204.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhc----cC-CCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHH
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQ----SN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM  102 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~  102 (274)
                      ++.++++|+ ++++++++|+++.+.|...+.+.    .+ .+|...++|++|.++||+++.+|++|||.|+++.+++.++
T Consensus         4 ~~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~   82 (438)
T 3mkh_A            4 DFHLSASQK-GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILV   82 (438)
T ss_dssp             BCCCCHHHH-HHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHH
T ss_pred             CCCCCHHHH-HHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHH
Confidence            356899999 99999999999998887655432    22 4541238999999999999999999999999999999999


Q ss_pred             HHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcC--CceEEEEeeCCCCCC-----CCCCceEEEEEeCC
Q 023999          103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG--EHVGALAMSEPNAGS-----DVVGMKCKADRVDG  175 (274)
Q Consensus       103 e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G--~~~~~~a~te~~~g~-----d~~~~~~~a~~~~~  175 (274)
                      |++++.++++++.+..+. ++...+..+++++ |++|++++++|  +.++++++|||++|+     |+..++|+|++++|
T Consensus        83 eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~  160 (438)
T 3mkh_A           83 EECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGD  160 (438)
T ss_dssp             HHHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETT
T ss_pred             HHHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCC
Confidence            999999998887665554 5566777899999 99999999996  589999999999998     58889999999999


Q ss_pred             eEEEeeEeecccCCC-----CCCEEEEEEEeCC------CCCCCCeEEEEEeCCC-----CC-eEEeccCcccCCCCCce
Q 023999          176 GYIINGNKMWCTNGP-----VAQTLVVYAKTDI------KAGSKGITAFIIEKGM-----PG-FSTAQKLDKLGMRGSDT  238 (274)
Q Consensus       176 g~~l~G~k~~vs~~~-----~a~~~lv~a~~~~------~~~~~~~~~~lv~~~~-----~g-v~~~~~~~~~Gl~~~~~  238 (274)
                      ||+|||+|.|+||+.     .||+++|+|+..+      .++.+++++|+||+++     || |++.+.|+++|++++++
T Consensus       161 g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~  240 (438)
T 3mkh_A          161 EWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSG  240 (438)
T ss_dssp             EEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCC
T ss_pred             EEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCc
Confidence            999999999999987     8999999999753      1123478999999875     88 99999999999999999


Q ss_pred             eeEEeceeeeCCCCcccCCCcccccccC
Q 023999          239 CELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       239 ~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      ++|.|+||+||++++||.+++|+.+++.
T Consensus       241 ~~v~fddv~VP~~~~lg~~~~g~~~~~~  268 (438)
T 3mkh_A          241 PHVRYTNVRVPTKNVLCPAGQGAKVAFG  268 (438)
T ss_dssp             CEEEEEEEEEEGGGEEECTTTHHHHHHH
T ss_pred             eEEEECcEEECHHHcCCCCCchHHHHHH
Confidence            9999999999999999999999876554

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=100.00  E-value=4e-40  Score=314.03  Aligned_cols=234  Identities=33%  Similarity=0.589  Sum_probs=205.3

Q ss_pred             CCCCHHHH---HHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           29 SLLFDDTQ---LQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        29 ~~~s~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      ..++++++   +++++.+++|+.+.+.+.  +.|..+.+|.  ++|+.+++.||+++.+|++|||.|++..+.+.++|++
T Consensus        44 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~--~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l  119 (607)
T 2uxw_A           44 SVLNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEE--TTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIV  119 (607)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCH--HHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCH--HHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHH
Confidence            45677775   148899999998887543  3466677888  9999999999999999999999999999999999999


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEEeeEe
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIINGNK  183 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~G~k  183 (274)
                      +++++++++.+..|...+...|..+|+++||++|+|++++|++++++++|||++|+|+..++|+|++++  ++|+|||+|
T Consensus       120 ~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K  199 (607)
T 2uxw_A          120 GMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSK  199 (607)
T ss_dssp             HHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEE
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEE
Confidence            999998887666553243577888999999999999999999999999999999999999999999974  479999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCC---C--CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999          184 MWCTNGPVAQTLVVYAKTDIKA---G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (274)
Q Consensus       184 ~~vs~~~~a~~~lv~a~~~~~~---~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g  258 (274)
                      .|+|++..||+++|+|+.++.+   +  .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++
T Consensus       200 ~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g  279 (607)
T 2uxw_A          200 LWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVG  279 (607)
T ss_dssp             EEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             EeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCC
Confidence            9999999999999999975321   1  3478999999999999999999999999999999999999999999999999


Q ss_pred             cccccccC
Q 023999          259 KGCNSFGE  266 (274)
Q Consensus       259 ~g~~~~~~  266 (274)
                      +|+.+++.
T Consensus       280 ~G~~~~~~  287 (607)
T 2uxw_A          280 SGFKVAMH  287 (607)
T ss_dssp             CHHHHHHH
T ss_pred             chHHHHHH
Confidence            99876543

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=100.00  E-value=4.4e-40  Score=299.42  Aligned_cols=228  Identities=23%  Similarity=0.406  Sum_probs=198.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC-CCHHHHHHHHHHHHh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEISR  107 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g-~~~~~~~~v~e~lg~  107 (274)
                      ..++++|+ ++++.+++|+. .+.+.+.+.|+++.+|.  ++|+.|.+.||+++.+|++|||.| .++.+.+.++|++++
T Consensus         7 ~~lt~e~~-~~~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~   82 (395)
T 3mxl_A            7 APLTPAGR-TVVDLLAGVIP-RISAEAADRDRTGTFPV--EAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAE   82 (395)
T ss_dssp             SCCSHHHH-HHHHHHTTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHT
T ss_pred             cCCCHHHH-HHHHHHHHHHH-HHhhchHHHhhhCCCCH--HHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHh
Confidence            46789999 99999999986 47788888899999999  999999999999999999999999 999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHH--HhcCCHHHH---HHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeE
Q 023999          108 ASGSVGLSYGAHSNLCINQL--VRHGSPAQK---DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN  182 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~  182 (274)
                      +++++++.+..|...+..++  ..+|+++||   ++|++++++|+.++++++|||++|.  ..+++   +++|||+|||+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~  157 (395)
T 3mxl_A           83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGR  157 (395)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEE
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeE
Confidence            99998887766643443333  356999999   9999999999999999999998652  22222   36788999999


Q ss_pred             eecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc--CCCcc
Q 023999          183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGKG  260 (274)
Q Consensus       183 k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~g~g  260 (274)
                      |.|+||+..||+++|+++.+++++.+++++|+||+++|||++.+.|+++|++++++++|.|+||+||+++++|  .++.|
T Consensus       158 K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g  237 (395)
T 3mxl_A          158 KVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR  237 (395)
T ss_dssp             EEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCC
T ss_pred             EEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCcc
Confidence            9999999999999999998765455578899999999999999999999999999999999999999999998  67777


Q ss_pred             ccccc
Q 023999          261 CNSFG  265 (274)
Q Consensus       261 ~~~~~  265 (274)
                      +....
T Consensus       238 ~~~~~  242 (395)
T 3mxl_A          238 RDAVL  242 (395)
T ss_dssp             CTTHH
T ss_pred             HHHHH
Confidence            65443

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=100.00  E-value=3.3e-39  Score=297.65  Aligned_cols=228  Identities=24%  Similarity=0.441  Sum_probs=196.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC-CCHHHHHHHHHHHH
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEIS  106 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g-~~~~~~~~v~e~lg  106 (274)
                      +..++++++ ++++++++|+. .+.+.+.+.|+.+.+|.  ++|+.|++.||+++.+|++|||.| .++.+++.++|+++
T Consensus        17 ~~~lt~e~~-~l~~~~r~~~~-~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~   92 (439)
T 3m9v_A           17 YAPVTPAGR-VLLDRLAAHLP-RIRSTAAEHDRDGTFPT--DTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVA   92 (439)
T ss_dssp             SSCSSHHHH-HHHHHHHTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-HHHHHHHHHHH-HHhhhHHHHHhcCCCCH--HHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHH
Confidence            456789999 99999999986 57777888888999999  999999999999999999999999 89999999999999


Q ss_pred             hhcCcchhhhhhhhHHHHHH--HHhcCCHHH---HHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEee
Q 023999          107 RASGSVGLSYGAHSNLCINQ--LVRHGSPAQ---KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING  181 (274)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G  181 (274)
                      ++++++++.+..|......+  +..+|+++|   |++|++++++|++++++++|||++  +...+.+   +++|||+|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG  167 (439)
T 3m9v_A           93 RADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSG  167 (439)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEE
T ss_pred             hhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEe
Confidence            99999887766664333333  346799999   999999999999999999999975  3333322   2778899999


Q ss_pred             EeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc--CCCc
Q 023999          182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGK  259 (274)
Q Consensus       182 ~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~g~  259 (274)
                      +|.|+||+..||+++|+++.+++.+.+++++|+||+++|||++.+.|+++|++++++++|.|+||+||++++||  .++.
T Consensus       168 ~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~  247 (439)
T 3m9v_A          168 RKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGA  247 (439)
T ss_dssp             EEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--C
T ss_pred             EEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCc
Confidence            99999999999999999998765556679999999999999999999999999999999999999999999999  6777


Q ss_pred             ccccc
Q 023999          260 GCNSF  264 (274)
Q Consensus       260 g~~~~  264 (274)
                      |+...
T Consensus       248 g~~~~  252 (439)
T 3m9v_A          248 RNDAV  252 (439)
T ss_dssp             CCGGG
T ss_pred             hHHHH
Confidence            76543

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.6e-39  Score=295.26  Aligned_cols=233  Identities=21%  Similarity=0.317  Sum_probs=195.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchh---chhcc-----CCCC---CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAA---NIDQS-----NSFP---QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLY   97 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~-----~~~~---~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~   97 (274)
                      ..++++++ ++++.+++|+++.+.|...   +.++.     ..++   ...++|+++.+.||+++.+|+   |.|+++.+
T Consensus        21 ~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~~~   96 (428)
T 2wbi_A           21 FVQTRKGQ-EVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSHVD   96 (428)
T ss_dssp             -CCCHHHH-HHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCHHH
Confidence            46789999 9999999999998866554   44322     2332   123899999999999999999   88999999


Q ss_pred             HHHHHHHHHhhcCc-chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceEEEEEeCC
Q 023999           98 HCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDG  175 (274)
Q Consensus        98 ~~~v~e~lg~~~~~-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~  175 (274)
                      .+.++|++++++.+ .++.+..+...+...|..+|+++||++|++++++|++++++++|||+ +|+|+..+.|+|++++|
T Consensus        97 ~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~  176 (428)
T 2wbi_A           97 YALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDED  176 (428)
T ss_dssp             HHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETT
T ss_pred             HHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCC
Confidence            99999999998743 33322222224566788899999999999999999999999999999 99999999999999999


Q ss_pred             eEEEeeEeecccCCCC--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeEEeccCcccCCCCCc---eeeEEeceeee
Q 023999          176 GYIINGNKMWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD---TCELVFENCFV  248 (274)
Q Consensus       176 g~~l~G~k~~vs~~~~--a~~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~---~~~v~f~~v~V  248 (274)
                      ||+|||+|.|+||+..  ||+++|+|+++++.  +.+++++|+||++.|||++.++|+++|+++++   +++|.|+||+|
T Consensus       177 g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~V  256 (428)
T 2wbi_A          177 SYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRV  256 (428)
T ss_dssp             EEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEEE
T ss_pred             EEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceEE
Confidence            9999999999999987  99999999976432  33468899999999999999999999999985   99999999999


Q ss_pred             CCCCcccCCCccccccc
Q 023999          249 PNENVLGQEGKGCNSFG  265 (274)
Q Consensus       249 p~~~llg~~g~g~~~~~  265 (274)
                      |++++||.+++|+.+++
T Consensus       257 P~~~~lg~~g~g~~~~~  273 (428)
T 2wbi_A          257 PATNLILGEGRGFEISQ  273 (428)
T ss_dssp             EGGGBCSCTTCHHHHHH
T ss_pred             CHHHhcCCccchHHHHH
Confidence            99999999998887654

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=100.00  E-value=8.5e-37  Score=279.53  Aligned_cols=209  Identities=18%  Similarity=0.270  Sum_probs=179.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      .+.++++++ ++++.+++|+.+ +.+.+.+.|+.+.+|.  ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus        15 ~~~~~~~~~-~l~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~   90 (414)
T 2or0_A           15 ENLYFQGMG-RVLDRIEVVAEE-IRGQAVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAA   90 (414)
T ss_dssp             --------C-HHHHHHHHTHHH-HHHHHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCccHH-HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHh
Confidence            456788899 999999999875 7777777888888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +++++++.+..+. .+...+..+|+++||++|++   +|+.+++++++ |         .++|++++|||+|||+|.|+|
T Consensus        91 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is  156 (414)
T 2or0_A           91 LDGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSS  156 (414)
T ss_dssp             HCHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEET
T ss_pred             hChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccC
Confidence            9999887666665 66677889999999999998   68988898887 4         578999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCC---CeEEEEEeCCCCCeEEe-ccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTA-QKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~---~~~~~lv~~~~~gv~~~-~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~  256 (274)
                      |+..||+++|+++.+++++.+   ++.+|+||++  ||++. +.|+++|++++++++|.|+||+||++++|+.
T Consensus       157 ~a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~  227 (414)
T 2or0_A          157 GTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNA  227 (414)
T ss_dssp             TGGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred             CCchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeecc
Confidence            999999999999986433333   7899999996  89998 8899999999999999999999999999976

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=100.00  E-value=1.5e-35  Score=271.85  Aligned_cols=208  Identities=19%  Similarity=0.283  Sum_probs=183.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ...+++  . ++++.+++|+. .+.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus        32 ~~~~~~--~-~l~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~  105 (422)
T 2jbr_A           32 TPDVSG--V-SMLEKIQQILP-QIAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAG  105 (422)
T ss_dssp             CCCCSS--C-CHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCH--H-HHHHHHHHHHH-HHHHhhHHHHHcCCCCH--HHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHh
Confidence            344544  4 78999999987 57777777888888999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      +++++++.+..+. .+...+..+|+++||++|++.   |+.+.+++++ |         .++|++++|||+|||+|.|+|
T Consensus       106 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is  171 (422)
T 2jbr_A          106 ACAGTAWAFSLLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSS  171 (422)
T ss_dssp             HCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEET
T ss_pred             hCcCHHHHHHHHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeec
Confidence            9999887666554 667788899999999999986   8888899887 3         468999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      |+..||+++|+++.+++++.+++++|+||++  ||++.+.|+++|++++++++|.|+||+||++++||.+
T Consensus       172 ~a~~Ad~~~v~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~  239 (422)
T 2jbr_A          172 GCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAK  239 (422)
T ss_dssp             TGGGCSEEEEEEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHH
T ss_pred             CCccccEEEEEEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeeccc
Confidence            9999999999999864334457889999997  8999888999999999999999999999999999875

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=100.00  E-value=3.9e-35  Score=266.75  Aligned_cols=200  Identities=20%  Similarity=0.329  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhh
Q 023999           38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG  117 (274)
Q Consensus        38 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~  117 (274)
                      ++++++++|+.+ +.+.+.+.|+.+.+|.  ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++++++++.+.
T Consensus        11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~   87 (394)
T 2rfq_A           11 EVMQRLDALLPT-LRERAQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSS   87 (394)
T ss_dssp             HHHHHHHHHHHH-HHHTHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHH
Confidence            689999999864 7777777888888999  9999999999999999999999999999999999999999999887766


Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEE
Q 023999          118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV  197 (274)
Q Consensus       118 ~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv  197 (274)
                      .+. .+...+..+|+++||++|++   +|+.+.+++++ |         .++|++++|||+|||+|.|+||+..||+++|
T Consensus        88 ~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v  153 (394)
T 2rfq_A           88 IIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL  153 (394)
T ss_dssp             HHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred             HHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEE
Confidence            665 66777888999999999998   68888899987 3         4789999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999          198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       198 ~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~  256 (274)
                      +++.+++.+.+++++|+||++  ||++.+.|+++|++++++++|.|+||+||++++|+.
T Consensus       154 ~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~  210 (394)
T 2rfq_A          154 GGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSF  210 (394)
T ss_dssp             EEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred             eeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhccc
Confidence            999742211236889999996  899988899999999999999999999999999975

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.97  E-value=1.1e-30  Score=251.39  Aligned_cols=218  Identities=18%  Similarity=0.230  Sum_probs=177.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (274)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~  111 (274)
                      ++++. ++++++++|+.+.... ....+....++.  +.|+.+++.|++.. +|+++|   .+..+...+.|+++   .+
T Consensus        28 ~~e~~-~lr~~vr~~l~~~~~~-~~~~~~~~~~~~--~~~~~l~~~g~l~~-~p~e~G---~~~~~~~~v~e~~~---~~   96 (659)
T 1w07_A           28 SRHAF-EVSDRIARLVASDPVF-EKSNRARLSRKE--LFKSTLRKCAHAFK-RIIELR---LNEEEAGRLRHFID---QP   96 (659)
T ss_dssp             SHHHH-HHHHHHHHHHHTCGGG-CCTTTTSSCHHH--HHHHHHHHHHHHHH-HHHHTT---CCHHHHHHHHHHHC---CC
T ss_pred             ChHHH-HHHHHHHHHHhcCccc-ccCCccCCChHH--HHHHHHHHHHHHHH-hHHHhC---CCchHHHHHHHHhc---cc
Confidence            36777 9999999999876322 111111223455  89999999988875 788887   45678777767664   34


Q ss_pred             chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEee
Q 023999          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKM  184 (274)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~  184 (274)
                      ++  +..|..++...|..+|+++|+++|++++++|++++|+++|||++|+|+.+++|+|+++  +|+|+||     |+|.
T Consensus        97 ~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~  174 (659)
T 1w07_A           97 AY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW  174 (659)
T ss_dssp             CH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEE
T ss_pred             hh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEE
Confidence            43  4555435667888899999999999999999999999999999999999999999998  6889999     9999


Q ss_pred             cccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeEEeccCcccC---CCCCceeeEEeceeeeCCCCc
Q 023999          185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENV  253 (274)
Q Consensus       185 ~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~l  253 (274)
                      |++| +..||+++|+|+..++++..++.+|+||. +      .|||++.+.|+++|   +++++++.|.|+||+||++++
T Consensus       175 ~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~l  254 (659)
T 1w07_A          175 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQM  254 (659)
T ss_dssp             CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGB
T ss_pred             eecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHh
Confidence            9999 89999999999986433344788999995 4      69999999999999   999999999999999999999


Q ss_pred             ccC------CCcccc
Q 023999          254 LGQ------EGKGCN  262 (274)
Q Consensus       254 lg~------~g~g~~  262 (274)
                      ||.      +|.++.
T Consensus       255 Lg~~~~v~~~g~~~~  269 (659)
T 1w07_A          255 LMRLSKVTREGEYVP  269 (659)
T ss_dssp             CCSSEEECTTCCEEE
T ss_pred             cCCcCccCCCCceec
Confidence            986      666654

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.95  E-value=1.9e-28  Score=230.43  Aligned_cols=185  Identities=22%  Similarity=0.332  Sum_probs=155.8

Q ss_pred             cHHHHHHHHhcCCcCCCC--CccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh
Q 023999           67 DVNLWKLMGNFNLHGITA--PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI  144 (274)
Q Consensus        67 ~~~~~~~l~~~G~~~l~v--Pe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  144 (274)
                      +.++++.+.+.||+++.+  |+++||.+....    ....++..+.....+..++. .+...|..++ ++||++|+++++
T Consensus        88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~----~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~  161 (541)
T 3djl_A           88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAA----RFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL  161 (541)
T ss_dssp             HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHH----HHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred             HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHH----HHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence            468999999999999999  689996544333    33333334444444444444 4556677788 999999999999


Q ss_pred             cCCc-------------eEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCCCCCCCCe
Q 023999          145 SGEH-------------VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI  210 (274)
Q Consensus       145 ~G~~-------------~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~  210 (274)
                      +|++             +.++++|||++|+|+..++|+|+++ +|+|+|||+|.|+| +..||+++|+|+.+     +++
T Consensus       162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gi  235 (541)
T 3djl_A          162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGL  235 (541)
T ss_dssp             CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEE
T ss_pred             CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----Cce
Confidence            9998             7899999999999999999999999 78899999999999 89999999999985     378


Q ss_pred             EEEEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999          211 TAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE  266 (274)
Q Consensus       211 ~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~  266 (274)
                      ++|+||++.|     ||++.+.|+++|++++++++|.|+||+   +++||.+++|+.++..
T Consensus       236 s~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~  293 (541)
T 3djl_A          236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILK  293 (541)
T ss_dssp             EEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHH
T ss_pred             EEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHH
Confidence            9999999988     999999999999999999999999996   8999999999876543

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=99.94  E-value=6.1e-26  Score=218.15  Aligned_cols=210  Identities=18%  Similarity=0.271  Sum_probs=160.1

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCC------cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQ------DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI  105 (274)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l  105 (274)
                      +++.. ++++++++++.+.  |........ .+..      ..+..+.+.+. |      +++||.+  ..+. .+.+++
T Consensus        26 ~~~~~-~~r~~~~~~l~~~--p~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~-~------~~~~~~~--~~~~-~~~~~~   91 (661)
T 2ddh_A           26 SPENT-RRRREIENLILND--PDFQHEDYN-FLTRSQRYEVAVKKSATMVKK-M------REYGISD--PEEI-MWFKNS   91 (661)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCSCGG-GSCHHHHHHHHHHHHHHHHHH-H------HHTTCCC--HHHH-HHHHHH
T ss_pred             ChhHH-HHHHHHHHHHhcC--cccccCCcC-CCCHHHHHHHHHHHHHHHHHH-H------HHcCCCC--chHH-HHHHHH
Confidence            45666 8999999998765  322111110 0111      01222344443 2      5677765  3333 336666


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe---
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN---  180 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~---  180 (274)
                      .....+  ..+..|..++...|..+|+++|+++|++++++|++++|+++|||++|+|+.+++|+|+++  +|+|+||   
T Consensus        92 ~~~~~~--~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~  169 (661)
T 2ddh_A           92 VHRGHP--EPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT  169 (661)
T ss_dssp             HHTTCC--CTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCS
T ss_pred             hccchh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCC
Confidence            654333  335556445677888999999999999999999999999999999999999999999998  7899999   


Q ss_pred             --eEeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeEEeccCcccCCCCCceeeEEeceeeeCC
Q 023999          181 --GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPN  250 (274)
Q Consensus       181 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~  250 (274)
                        |+|.|++| +..||+++|+|+..++++..++.+|+||. +      .|||++.+.|+++|+++++++.+.|+||+||+
T Consensus       170 ~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~  249 (661)
T 2ddh_A          170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPR  249 (661)
T ss_dssp             STTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEG
T ss_pred             CCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECH
Confidence              99999999 88999999999986433345788999995 4      79999999999999999999999999999999


Q ss_pred             CCcccCC
Q 023999          251 ENVLGQE  257 (274)
Q Consensus       251 ~~llg~~  257 (274)
                      +++||..
T Consensus       250 ~~lLg~~  256 (661)
T 2ddh_A          250 ENMLMKY  256 (661)
T ss_dssp             GGBCCSS
T ss_pred             HHhcCcc
Confidence            9999974

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=99.90  E-value=1.8e-23  Score=194.37  Aligned_cols=139  Identities=16%  Similarity=0.261  Sum_probs=113.7

Q ss_pred             HHHHhcCC--HHHHHHHhHHHhcCCceEEEEeeCCCCC--------CCC-CCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999          125 NQLVRHGS--PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDV-VGMKCKADRVDGGYIINGNKMWCTNGPVAQ  193 (274)
Q Consensus       125 ~~l~~~g~--~~q~~~~l~~~~~G~~~~~~a~te~~~g--------~d~-~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~  193 (274)
                      .++..+|+  ++||++||+++++|+++.++++|||+.+        +|+ ..++ ++++++|||+|||+|.|+||+..||
T Consensus       118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            45568999  9999999999999999999999999864        664 3444 8889999999999999999999999


Q ss_pred             EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEec---cCcc----------cCC-CC-CceeeEEeceeeeCCCCcc--c
Q 023999          194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQ---KLDK----------LGM-RG-SDTCELVFENCFVPNENVL--G  255 (274)
Q Consensus       194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~---~~~~----------~Gl-~~-~~~~~v~f~~v~Vp~~~ll--g  255 (274)
                      +++|+++++.++ ..+..++|+||++.|||++.+   .+.+          +|+ +. .+.+.|.|+||+||++++|  |
T Consensus       197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            999999875321 223478999999999999953   3433          566 53 5678899999999999998  6


Q ss_pred             CCCcccccc
Q 023999          256 QEGKGCNSF  264 (274)
Q Consensus       256 ~~g~g~~~~  264 (274)
                      ..+.|+.++
T Consensus       277 ~~~~g~~~~  285 (490)
T 1u8v_A          277 EYDFAGMMV  285 (490)
T ss_dssp             CGGGHHHHH
T ss_pred             ChhHHHHHH
Confidence            777776543

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=99.86  E-value=1.2e-21  Score=181.81  Aligned_cols=130  Identities=22%  Similarity=0.374  Sum_probs=104.9

Q ss_pred             CHHHHHHHhHHHhcCCceEEEEeeCCCCC--------CCCCCceEEEE-EeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999          132 SPAQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTLVVYAKTD  202 (274)
Q Consensus       132 ~~~q~~~~l~~~~~G~~~~~~a~te~~~g--------~d~~~~~~~a~-~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~  202 (274)
                      .++||++||+++++|+++.++++|||+.|        +|+. +.++++ +++|||+|||+|.|+|| ..||+++|+++++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence            36999999999999999999999999976        5654 455554 78999999999999999 9999999999975


Q ss_pred             CCCC-CCCeEEEEEeCCCCCeEEec--cCcc--------cCCCC-CceeeEEeceeeeCCCCcc--cCCCccccc
Q 023999          203 IKAG-SKGITAFIIEKGMPGFSTAQ--KLDK--------LGMRG-SDTCELVFENCFVPNENVL--GQEGKGCNS  263 (274)
Q Consensus       203 ~~~~-~~~~~~~lv~~~~~gv~~~~--~~~~--------~Gl~~-~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~  263 (274)
                      ++++ .++.++|+||++.|||++..  .+..        +|++. .+++.|.|+||+||++++|  |.++.|+..
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~  274 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNA  274 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHH
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHH
Confidence            3222 23578999999999999953  3322        45564 6788999999999999998  666655533

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=99.84  E-value=5.8e-21  Score=177.63  Aligned_cols=130  Identities=18%  Similarity=0.235  Sum_probs=106.9

Q ss_pred             HHHHHHHhHHHhcCCceEEEEeeCCCC--------CCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCC-
Q 023999          133 PAQKDKYLPKLISGEHVGALAMSEPNA--------GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI-  203 (274)
Q Consensus       133 ~~q~~~~l~~~~~G~~~~~~a~te~~~--------g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~-  203 (274)
                      .+|+++||+++++|+++.++++|||.+        |+|+ .+++ +.+++|||+|||.|.|+||+..||+++|+++.++ 
T Consensus       132 ~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~-~~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~~~  209 (515)
T 3hwc_A          132 TQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRI-VEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG  209 (515)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEE-EEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEE-EEEECCEEEEEEEEEEECCccccCEEEEEEEecCC
Confidence            688999999999999999999999986        4677 5443 3456899999999999999999999999998732 


Q ss_pred             CCCCCCeEEEEEeCCCCCeEEeccCcccCC-----C-----CCceeeEEeceeeeCCCCcc--cCCCccccccc
Q 023999          204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGM-----R-----GSDTCELVFENCFVPNENVL--GQEGKGCNSFG  265 (274)
Q Consensus       204 ~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl-----~-----~~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~~~  265 (274)
                      .++++ +++|+||++.|||++...+..+|.     +     +..++.|.|+||+||++++|  |..+.|+.+++
T Consensus       210 ~~~~~-~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~  282 (515)
T 3hwc_A          210 IPGEQ-VIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQ  282 (515)
T ss_dssp             CCGGG-CEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHH
T ss_pred             CCCCe-EEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHH
Confidence            22233 889999999999999776666552     2     23378899999999999999  88888887653

>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}

Probab=99.56  E-value=5.6e-15  Score=137.59  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=99.5

Q ss_pred             HHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC-----CceE-EEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCCC
Q 023999          133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDVV-----GMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG  206 (274)
Q Consensus       133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~-----~~~~-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~  206 (274)
                      .+...+|+..+.++++..+.++++|.......     .+-. .+++++|||+|||.|.|+||+..||+++|+++..+..+
T Consensus       133 ~~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~  212 (517)
T 4g5e_A          133 AKNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIP  212 (517)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCC
T ss_pred             HHHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCC
Confidence            35667899999999999999999997432211     1112 35668899999999999999999999999998766545


Q ss_pred             CCCeEEEEEeCCCCCeEEeccCcccCCC---------C-CceeeEEeceeeeCCCCcc--cCCCccccccc
Q 023999          207 SKGITAFIIEKGMPGFSTAQKLDKLGMR---------G-SDTCELVFENCFVPNENVL--GQEGKGCNSFG  265 (274)
Q Consensus       207 ~~~~~~~lv~~~~~gv~~~~~~~~~Gl~---------~-~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~~~  265 (274)
                      .+...+|+||.++|||++.......+.+         + ...+.|.|+||+||+++++  |+.+.+..+.+
T Consensus       213 ~d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~  283 (517)
T 4g5e_A          213 GDQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQ  283 (517)
T ss_dssp             GGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHH
T ss_pred             ccceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHH
Confidence            5567889999999999986443333222         2 2347799999999999976  77777665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	4e-74
d1jqia2	231	e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do	7e-61
d1rx0a2	231	e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H	3e-55
d2d29a2	233	e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus	3e-53
d1ukwa2	227	e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge	7e-53
d3mdea2	231	e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge	7e-53
d1buca2	232	e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do	5e-49
d1siqa2	236	e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH	2e-44
d2ddha3	267	e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II,	4e-39
d1w07a3	271	e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai	2e-38
d1u8va2	275	e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase	4e-31
d1r2ja2	210	e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro	6e-31
d2c12a2	259	e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox	6e-31

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  224 bits (572), Expect = 4e-74
 Identities = 148/228 (64%), Positives = 183/228 (80%), Gaps = 2/228 (0%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +YGG 
Sbjct: 8   LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 67

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 68  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 127

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG--SKG 209
           LAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+G
Sbjct: 128 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 187

Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  N+LG E
Sbjct: 188 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE 235

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  190 bits (483), Expect = 7e-61
 Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 2/231 (0%)

Query: 28  TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
            S+   +T    +++   FA + + P AA +D+ + FP      K MG   L  +  P+E
Sbjct: 3   QSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTS--QVKKMGELGLLAMDVPEE 60

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
             G GL YL + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+
Sbjct: 61  LSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGD 120

Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
            +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD    +
Sbjct: 121 KIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQN 180

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           KGI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G
Sbjct: 181 KGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG 231

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (445), Expect = 3e-55
 Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 29  SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEY 88
           S+  ++ Q +F++    FA   +AP  A  DQ   FP D  + +        G+    + 
Sbjct: 7   SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVD--VMRKAAQLGFGGVYIQTDV 64

Query: 89  GGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           GG GL  L   +  E ++    S       H+  C   +   G+  Q+ K+ P L + E 
Sbjct: 65  GGSGLSRLDTSVIFEALATGCTSTTAYISIHNM-CAWMIDSFGNEEQRHKFCPPLCTMEK 123

Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
             +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T    G K
Sbjct: 124 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGP-GPK 182

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           GI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G E
Sbjct: 183 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE 231

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  170 bits (432), Expect = 3e-53
 Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 6/229 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
               + Q      +F +  +AP AA  D++ +FP D  L + +  F + G   P+ YGG 
Sbjct: 6   EGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGA 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL        +E I+   G++ L+  +H++L    ++  GS AQK+ +LPKL SGE +GA
Sbjct: 64  GLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGA 123

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGS 207
             ++EP +GSD   +K KA++V+GG+ +NG K + T G VA   VV A+TD     +   
Sbjct: 124 WGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKH 183

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
           +GI+AF   +   G    +K +KLG+  SDT +L+ E+ FVP E +LG+
Sbjct: 184 QGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE 232

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

 Score =  169 bits (429), Expect = 7e-53
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q Q +    +FA+E I P A   D+    P    + + +    L     P+EYGG+
Sbjct: 5   LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWP--VIEKLHEVGLLNAIIPEEYGGM 62

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GL  L   I  EE++ A   +     A     I  ++  G+  QK+++L  L     + A
Sbjct: 63  GLKMLDEVIVGEELAYACMGIYTIPMASDL-GITPVLLAGTEEQKERFLRPLTEKPALAA 121

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211
            A+SEP  GSD   +K +A R    Y++NG KMW +NG  A+ +VV+A  + +   KG+ 
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVV 181

Query: 212 AFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
           A ++E+G PGF   +   K+G R S T ELVFE+  VP EN LG+E
Sbjct: 182 ALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE 227

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  169 bits (429), Expect = 7e-53
 Identities = 81/229 (35%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             + Q +F+ +  +FARE I P AA  D++  +P    L K      L     P+ +GGL
Sbjct: 6   LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP--LLKRAWELGLMNTHIPESFGGL 63

Query: 92  GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
           GLG +  C+  EE++     V  +  A++      L+  G+  Q+ KYL ++     + A
Sbjct: 64  GLGIIDSCLITEELAYGCTGVQTAIEANTL-GQVPLIIGGNYQQQKKYLGRMTEEPLMCA 122

Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY---AKTDIKAGSK 208
             ++EP AGSDV G+K KA++    YIING KMW TNG  A    +            SK
Sbjct: 123 YCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASK 182

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
             T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  E
Sbjct: 183 AFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGE 231

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

 Score =  160 bits (404), Expect = 5e-49
 Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL 91
             D Q  F +    F  + +AP     D    + ++  L   + +  + G    ++YGG 
Sbjct: 5   LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKE--LIDELLSLGITGAYFEEKYGGS 62

Query: 92  GLGYLYHCI---AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
           G           A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  
Sbjct: 63  GDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTK 122

Query: 149 VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
           +GA  ++EPNAG+D  G +  A +  DG Y +NG+K++ TNG  A   +V+A TD   G+
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGN 182

Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257
            GITAFI+E G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+E
Sbjct: 183 HGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE 232

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (374), Expect = 2e-44
 Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 9/230 (3%)

Query: 31  LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90
                ++  +++   + +E + PR    +++  F +++     MG          + YG 
Sbjct: 13  QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISE--MGELG-VLGPTIKGYGC 69

Query: 91  LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
            G+  + + +   E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G
Sbjct: 70  AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129

Query: 151 ALAMSEPNA--GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
              ++EPN+      +  +   +  +  Y +NG K W TN P+A   VV+A+ +      
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG---- 185

Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
            I  F++EKGM G S  +   K  +R S T  ++ +   VP ENVL    
Sbjct: 186 CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (341), Expect = 4e-39
 Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 15/174 (8%)

Query: 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
            M   +            H  + +  L+   +  Q++++     + E  G  A +E   G
Sbjct: 85  IMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHG 144

Query: 161 SDVVGMKCKADR-------VDGGYIINGNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITA 212
           + + G++  A         +     +   K W       +   +V A+   +    G+ A
Sbjct: 145 THLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHA 204

Query: 213 FII-------EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259
           F++        K +PG +      K G    D   L  +N  +P EN+L +  +
Sbjct: 205 FVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQ 258

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  133 bits (336), Expect = 2e-38
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK--C 168
                   H  + +  +   G+  Q+ K+L      + +G  A +E   GS+V G++   
Sbjct: 93  DQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTA 152

Query: 169 KADRVDGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGITAFIIE------ 216
             D     ++I+      +K W      V+   VVYA+        GI  FI++      
Sbjct: 153 TLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLED 212

Query: 217 -KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK 259
              +P  +      K+G       D   L+F++  +P + +L +  K
Sbjct: 213 HSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSK 259

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

 Score =  114 bits (287), Expect = 4e-31
 Identities = 25/206 (12%), Positives = 60/206 (29%), Gaps = 29/206 (14%)

Query: 76  NFNLHGITAPQEYGG-LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPA 134
           N   +   +  +    + +  L          R  G    ++ A  +       ++G+  
Sbjct: 70  NRFANLHQSTDDLRKKVKMQRLLGQKTASCFQRCVGMD--AFNAVFSTTYEIDQKYGTNY 127

Query: 135 QKD--KYLPKLISGEHVGALAMSEPNAGSDVVGMK--------CKADRVDGGYIINGNKM 184
            K+  +YL  +   + +   AM++P     +               ++ + G ++ G K 
Sbjct: 128 HKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKA 187

Query: 185 WCTNGPVAQTLVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT----- 238
             T    +   ++     +         +F       G            R  +      
Sbjct: 188 HQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADID 247

Query: 239 ----------CELVFENCFVPNENVL 254
                       +VF+N F+PN+ + 
Sbjct: 248 LGNKQFGGQEALVVFDNVFIPNDRIF 273

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

 Score =  112 bits (280), Expect = 6e-31
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 8/213 (3%)

Query: 46  FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105
              + +  RAA  D S   P+D  L   +G   L       E+GGLGLG   +      +
Sbjct: 5   LLTDLVGDRAAEWDTSGELPRD--LLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHV 62

Query: 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG 165
                S+     +               A +     K ++   + A+  SE  AGSD+  
Sbjct: 63  GSLCSSLRSVMTSQGMAAWTVQ--RLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSA 120

Query: 166 MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTA 225
           M+ +        +++G+K+W T    A  LVV+   +  +G+      ++    PG    
Sbjct: 121 MRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV----VVVPADTPGVRVE 176

Query: 226 QKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258
           +     G R +   +L  +   VP   VL   G
Sbjct: 177 RVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG 209

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

 Score =  113 bits (283), Expect = 6e-31
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 30/254 (11%)

Query: 32  FDDTQLQFKESVGQFARENIAPRAA----NIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
              +QL+ +     FA   +   +A      DQ + F      ++      L     P  
Sbjct: 5   LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64

Query: 88  YGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
            GG     ++  I +EE+     +  ++  A +   +  ++      Q+    P +    
Sbjct: 65  LGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEG 124

Query: 148 H-VGALAMSEPNAGSDVVG-----MKCKADRVDGGYIINGNKMWCTNGPVAQT-----LV 196
             + +L  SEPN  ++ +      ++  A +V   ++I+G K+W +N             
Sbjct: 125 EPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLAC 184

Query: 197 VYAKTD---------IKAGSKGITAFIIEKGMPGFSTAQ------KLDKLGMRGSDTCEL 241
           V  +               +  I   ++ +     +         + +  G   +     
Sbjct: 185 VVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHT 244

Query: 242 VFENCFVPNENVLG 255
            F    VP+EN+L 
Sbjct: 245 RFTEFHVPHENLLC 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	100.0
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	100.0
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	100.0
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	100.0
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	100.0
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	100.0
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	100.0
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	100.0
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	100.0
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	100.0
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	99.97
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	99.95
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	99.82

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-47  Score=322.57  Aligned_cols=225  Identities=35%  Similarity=0.554  Sum_probs=211.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +.+|+||+ ++++.+++|+++.+.+.+.+.|+.+.+|.  ++|++++++||+++.+|+++||.|.++.+.+.++|+++++
T Consensus         3 f~Lteeq~-~l~~~~r~f~~~~~~p~a~~~d~~~~~p~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~   79 (227)
T d1ukwa2           3 FSLTEEQR-QLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYA   79 (227)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHhhhhhhhccccccCcccccccccccchhhhccc
Confidence            47899999 99999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      +.++++....+. .+...+..+++++||++|++++++|+.++++++|||++|+|...++|+|++++|||+|||+|.||++
T Consensus        80 ~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~  158 (227)
T d1ukwa2          80 CMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISN  158 (227)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             cccccccccccc-cchhhhhccCCHHHHHHhccccccccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCc
Confidence            988877666655 6677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      +..||+++|.|+.+++.+.+++++|+||+++|||++.+.|+++|++++++++|+|+||+||++++||++
T Consensus       159 ~~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llGeE  227 (227)
T d1ukwa2         159 GGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE  227 (227)
T ss_dssp             TTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             cccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999999876555667899999999999999999999999999999999999999999999864

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-47  Score=322.97  Aligned_cols=227  Identities=36%  Similarity=0.654  Sum_probs=213.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      .++|+||+ ++++++|+|+++.+.|.+.++|+.+.+|.  ++|+.++++||+++.+|++|||.|+++.+.+.++|++++.
T Consensus         5 ~~L~ee~~-~l~~~~r~f~~~~i~p~a~~~d~~~~~p~--e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~   81 (231)
T d1jqia2           5 VELPETHQ-MLRQTCRDFAEKELVPIAAQLDKEHLFPT--SQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRG   81 (231)
T ss_dssp             SCCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhChHHHHHHHhcCCCCH--HHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhh
Confidence            47899999 99999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      +.+.++....+...+...+..+++++||++|++++++|++++++++|||++|+|+..++|+|++++|+|+|||+|.||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~  161 (231)
T d1jqia2          82 CASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITN  161 (231)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEET
T ss_pred             ccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEee
Confidence            98877776666656678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999          189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g  258 (274)
                      +..++++++.++.++..+.+++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++||++|
T Consensus       162 ~~~a~~~~v~a~~~~~~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         162 SWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             TTTCSEEEEEEESCGGGGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             cccccccccccccccccccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            9999999999998765555678999999999999999999999999999999999999999999999876

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.6e-47  Score=320.02  Aligned_cols=225  Identities=36%  Similarity=0.626  Sum_probs=212.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      +++|+||+ ++++++|+|+++.+.|.+.+.|+++.+|.  ++|++++++||+++.+|+++||.|.++.+.+.++++++++
T Consensus         4 F~l~~e~~-~l~~~~r~f~~~~i~p~a~e~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~   80 (233)
T d2d29a2           4 FEEGAEER-QVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY   80 (233)
T ss_dssp             TSCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCcccHHHHHHhCCCCH--HHHHHHHHhccccccccccccccccchhhhcccccccccc
Confidence            57999999 99999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      +.++++.+..|.......+..+++++||++|++++++|++++++|+|||++|+|...++|+|++++|+|+|||+|.||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~  160 (233)
T d2d29a2          81 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ  160 (233)
T ss_dssp             CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred             ccccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceecccc
Confidence            99988887777656677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCCCC----CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999          189 GPVAQTLVVYAKTDIKAG----SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~~~----~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~  256 (274)
                      +..||+++|+|+..++++    ..++++|+||+++|||++.+.|+++|++++++++|+|+||+||++++||+
T Consensus       161 ~~~a~~~~v~a~~~~~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~v~f~~v~VP~~~llGe  232 (233)
T d2d29a2         161 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGE  232 (233)
T ss_dssp             TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESS
T ss_pred             ccccccccccccccCCccccccccCceEEEEEcCCCCcEECCcccccccCCCCeEEEEEeeEEECHHHcCcC
Confidence            999999999999865432    35789999999999999999999999999999999999999999999986

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8e-47  Score=317.63  Aligned_cols=226  Identities=37%  Similarity=0.585  Sum_probs=210.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      ++++|++|+ ++++.+++|+++.+.|.+.+.|+++.+|.  ++|++++++||+++.+|+++||.|.+..+.+.+.|++++
T Consensus         3 df~lseeq~-~l~~~~r~f~~~~~~p~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~   79 (231)
T d3mdea2           3 SFELTEQQK-EFQATARKFAREEIIPVAAEYDRTGEYPV--PLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAY   79 (231)
T ss_dssp             CCCCCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHHcCCCCH--HHHHHHHHhhhccccccccccCccccccccccchhhhcc
Confidence            357999999 99999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT  187 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs  187 (274)
                      ++.+.++.+..+. .....|..+++++||++|++++++|++++++|+|||++|+|+.+++|+|++++|||+|||+|.||+
T Consensus        80 ~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt  158 (231)
T d3mdea2          80 GCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWIT  158 (231)
T ss_dssp             HCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred             ccccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeC
Confidence            9999888777665 677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEEEEEeCCCCCC---CCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          188 NGPVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       188 ~~~~a~~~lv~a~~~~~~~~---~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      ++..|++++++|+++.++..   .++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.+
T Consensus       159 ~~~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~E  231 (231)
T d3mdea2         159 NGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGE  231 (231)
T ss_dssp             TTTTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSCT
T ss_pred             CchhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecCC
Confidence            99999999999998654322   36889999999999999999999999999999999999999999999853

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-47  Score=319.35  Aligned_cols=228  Identities=64%  Similarity=1.086  Sum_probs=212.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA  108 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~  108 (274)
                      ..+|+||+ ++++.+++|+++.+.+.+.+.++.+.+|..+++|+++.++||+++.+|+++||.|.++.+.+.++|+++++
T Consensus         6 ~~Lseeq~-~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~   84 (236)
T d1ivha2           6 NGLSEEQR-QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRA   84 (236)
T ss_dssp             GTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhh
Confidence            46999999 99999999999999999999998888886568999999999999999999999999999999999999999


Q ss_pred             cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999          109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN  188 (274)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~  188 (274)
                      ++++++.+..+...+...|..+++++||++|++++++|+.++++|+|||.+|+|+..++|+|++++|||+|||+|.||++
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~  164 (236)
T d1ivha2          85 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN  164 (236)
T ss_dssp             CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred             hhccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeC
Confidence            99988887776545677888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          189 GPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       189 ~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      +..|++++|.|+....  +..+++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||++
T Consensus       165 ~~~a~~~~v~a~~~~~~~~~~~g~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~fd~v~Vp~~~llGee  235 (236)
T d1ivha2         165 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHE  235 (236)
T ss_dssp             GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             CccccccccccccccccccccCccEEEEEeCCCCceEeCCCcCcccCCCCceEEEEEeeEEEcHHHcCCCC
Confidence            9999999999997543  23457899999999999999999999999999999999999999999999875

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-46  Score=313.38  Aligned_cols=229  Identities=28%  Similarity=0.504  Sum_probs=214.6

Q ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHH
Q 023999           24 AFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAME  103 (274)
Q Consensus        24 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e  103 (274)
                      -..++..+++||+ ++++++++|+++.+.|.+.++|+.+.+|.  ++|+++.++||+++.+|+++||.|.+..+.+.++|
T Consensus         3 ~~~~~~~Lt~e~~-~l~~~~r~F~~~~i~p~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e   79 (231)
T d1rx0a2           3 CIDPSMGLNEEQK-EFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFE   79 (231)
T ss_dssp             TTCTTTTCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHH
T ss_pred             CcCCCCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHcCCcccccchhhccccccchhhhhhHH
Confidence            3456678999999 99999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEe
Q 023999          104 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK  183 (274)
Q Consensus       104 ~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k  183 (274)
                      ++++++.+.++.+..+. .+...+..+++++|+++|++++.+|+...+++++||..|+|...++|+|++++|+|+|||+|
T Consensus        80 ~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K  158 (231)
T d1rx0a2          80 ALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSK  158 (231)
T ss_dssp             HHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEE
T ss_pred             HHhhhcccccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccccccCCCCCCceEEEEEECCEEEEEeEE
Confidence            99999999888877776 77788999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       184 ~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      .||+++..||+++|+++..++ +.+++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||++
T Consensus       159 ~~vs~~~~Ad~~~v~a~~~~~-~~~~~~~~lv~~d~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~llG~E  231 (231)
T d1rx0a2         159 AFISGAGESDIYVVMCRTGGP-GPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE  231 (231)
T ss_dssp             EEEETTTTCSEEEEEEESSSS-SGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESST
T ss_pred             ccccCCCcCCEEEEEEeecCC-CCCceEEEEEeCCCCceEecCccCccccCCCceEEEEEccEEEcHHHEeCCC
Confidence            999999999999999997643 4557899999999999999999999999999999999999999999999864

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=100.00  E-value=4.8e-44  Score=296.96  Aligned_cols=206  Identities=24%  Similarity=0.381  Sum_probs=192.2

Q ss_pred             HHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHH
Q 023999           45 QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCI  124 (274)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~  124 (274)
                      .++.+.+.+.+.++|+++.+|.  ++|++++++||+++.+|++|||.|+++.+.+.++|+++++++++++.+..|. .+.
T Consensus         4 a~~~~~i~~~Aae~d~~~~~p~--~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~   80 (210)
T d1r2ja2           4 ALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAA   80 (210)
T ss_dssp             HHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHH
T ss_pred             HHHHhhhhHhHHHHHHhCCCCH--HHHHHHHHcCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccc
Confidence            4567889999999999999999  9999999999999999999999999999999999999999999888888776 777


Q ss_pred             HHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCC
Q 023999          125 NQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK  204 (274)
Q Consensus       125 ~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~  204 (274)
                      ..+..+++++||++|++.+++|.. .+++++||..|+|...++|++++++|+|+|||+|.||+++..||+++|+++.+++
T Consensus        81 ~~l~~~gs~~qk~~~l~~~~~g~~-~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad~~~v~a~~~~~  159 (210)
T d1r2ja2          81 WTVQRLGDAGQRATFLKELTSGKL-AAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG  159 (210)
T ss_dssp             HHHHHHSCHHHHHHHHHHTTCC-C-EEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSSS
T ss_pred             hhhhhccccccccccccccccccc-ccccccccccccccccccceEEEeccceEEEEeecccccccccccccceeeecCC
Confidence            889999999999999999999985 5899999999999999999999999999999999999999999999999987543


Q ss_pred             CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999          205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (274)
Q Consensus       205 ~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g  258 (274)
                          +..+|+||++.|||++.+.|+++|++++++++++|+||+||++++||.+|
T Consensus       160 ----~~~~~lv~~~~~Gv~v~~~~~~~G~r~~~~~~v~f~~v~VP~~~~lG~~G  209 (210)
T d1r2ja2         160 ----SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG  209 (210)
T ss_dssp             ----CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTT
T ss_pred             ----CceEEeecCCCCCeEeccCCCcccCCCCCeEEEEEeeEEECHHHCcCCCC
Confidence                45799999999999999999999999999999999999999999999887

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-44  Score=302.09  Aligned_cols=223  Identities=30%  Similarity=0.531  Sum_probs=204.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999           28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR  107 (274)
Q Consensus        28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~  107 (274)
                      +..+|+||+ ++++++|+|+++.+.|.+.+.++++.+|.  ++|+++.++||+++.+| ++||.|.+..+.+.+++++++
T Consensus        11 d~~Lteeq~-~l~d~~r~f~~~~i~p~~~~~d~~~~~p~--~~~~~~~~~g~~~~~i~-~~gg~g~~~~~~~~~~e~~~~   86 (236)
T d1siqa2          11 EEQLTTDEI-LIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTIK-GYGCAGVSSVAYGLLARELER   86 (236)
T ss_dssp             GGGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTCE-ETTEECCCHHHHHHHHHHHHT
T ss_pred             cccCCHHHH-HHHHHHHHHHHhhCChhHHHHHhcCCCCH--HHHHHhhhhhccccccc-ccccCCcCHHHHHHHHHhhhc
Confidence            346899999 99999999999999999999999999999  99999999999999885 689999999999999999999


Q ss_pred             hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEE--EEeCCeEEEeeEeec
Q 023999          108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMW  185 (274)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a--~~~~~g~~l~G~k~~  185 (274)
                      .+.+.+..+..+..++...+..+++++||++|++++++|+.++++|+|||++|+|...+.|++  ++++|+|+|||+|.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~~  166 (236)
T d1siqa2          87 VDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTW  166 (236)
T ss_dssp             TCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEE
T ss_pred             cccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCcccccccccccccccccccceEecccccc
Confidence            998877666666546678899999999999999999999999999999999999998887766  667888999999999


Q ss_pred             ccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999          186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG  258 (274)
Q Consensus       186 vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g  258 (274)
                      |+++..||+++|+|++++    .++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||..+
T Consensus       167 vt~a~~Ad~~~V~art~~----~~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~~  235 (236)
T d1siqa2         167 ITNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS  235 (236)
T ss_dssp             EETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCC
T ss_pred             EecCCCceEEEEEecccC----CcceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCCC
Confidence            999999999999999864    368899999999999999999999999999999999999999999998543

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=100.00  E-value=3.8e-43  Score=295.57  Aligned_cols=226  Identities=37%  Similarity=0.639  Sum_probs=206.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCC---CCCHHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGL---GLGYLYHCIAMEEI  105 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~---g~~~~~~~~v~e~l  105 (274)
                      +.+|++|+ ++++++++|+++.+.|.+.+.|+.+.+|.  ++|++++++||+++.+|++|||.   +........+++.+
T Consensus         3 f~lt~~~~-~l~~~~r~f~~~~l~p~~~e~D~~~~~p~--e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~   79 (232)
T d1buca2           3 FNLTDIQQ-DFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEEL   79 (232)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHhhhcccccccccccccccccccchheehhhhhh
Confidence            47899999 99999999999999999999999999999  99999999999999999999965   56888888888888


Q ss_pred             HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCe-EEEeeEee
Q 023999          106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGNKM  184 (274)
Q Consensus       106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~~l~G~k~  184 (274)
                      +............+..++...+..+++++||.+|++++++|+++++++++||.+|+|...+.|++++++|| |+|||+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~  159 (232)
T d1buca2          80 AKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKI  159 (232)
T ss_dssp             HHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEE
T ss_pred             hhccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEe
Confidence            87666555444444436677889999999999999999999999999999999999999999999999885 99999999


Q ss_pred             cccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999          185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE  257 (274)
Q Consensus       185 ~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~  257 (274)
                      ||+++..||+++|.++..++.+.+++++|+||+++|||++.+.|+++|++++++++|+|+||+||++++||++
T Consensus       160 ~vt~a~~ad~~~v~a~~~~~~~~~g~~~~lv~~~~~Gv~i~~~~~~~G~r~~~~~~l~f~~v~vp~~~llGee  232 (232)
T d1buca2         160 FITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE  232 (232)
T ss_dssp             EEETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCT
T ss_pred             eecccccceEEEEEEEecCCCCCceeEEEEEeCCCCceEeCCccCcccCCCCceEEEEEeeEEEcHHHccCCC
Confidence            9999999999999999887777778999999999999999999999999999999999999999999999874

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=100.00  E-value=1.4e-42  Score=296.85  Aligned_cols=226  Identities=20%  Similarity=0.320  Sum_probs=195.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCcchhchh----ccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHH
Q 023999           29 SLLFDDTQLQFKESVGQFARENIAPRAANID----QSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE  104 (274)
Q Consensus        29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~  104 (274)
                      ++++++|+ ++++++|+|+.+.+.|...+.+    +.+.++..+++|++++++||+++.+|++|||.|.++.+.+.++|+
T Consensus         3 f~lt~eq~-~l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~ee   81 (259)
T d2c12a2           3 FKLSPSQL-EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEE   81 (259)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhhh
Confidence            47899999 9999999999999888754432    223232223899999999999999999999999999999999999


Q ss_pred             HHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhc--CCceEEEEeeCCCCCCCCC-----CceEEEEEeCCeE
Q 023999          105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS--GEHVGALAMSEPNAGSDVV-----GMKCKADRVDGGY  177 (274)
Q Consensus       105 lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~--G~~~~~~a~te~~~g~d~~-----~~~~~a~~~~~g~  177 (274)
                      ++++++++++.+..+. ++...+..+++++||++|++++++  |++++++++|||++|+|..     +++|+|++++|+|
T Consensus        82 l~~~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~  160 (259)
T d2c12a2          82 LFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW  160 (259)
T ss_dssp             HHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEE
T ss_pred             cccccccccccccccc-chHHHHHHhhhccccccccccccccceeeeeeccccCCccccccccccccccccccccccchh
Confidence            9999999988887776 777788899999999999999987  7889999999999999964     4779999999999


Q ss_pred             EEeeEeecccCC-----CCCCEEEEEEEeCCCCC---------CCCeEEEEEeCCCCC------eEEeccCcccCCCCCc
Q 023999          178 IINGNKMWCTNG-----PVAQTLVVYAKTDIKAG---------SKGITAFIIEKGMPG------FSTAQKLDKLGMRGSD  237 (274)
Q Consensus       178 ~l~G~k~~vs~~-----~~a~~~lv~a~~~~~~~---------~~~~~~~lv~~~~~g------v~~~~~~~~~Gl~~~~  237 (274)
                      +|||+|.||||+     ..||+++|+|+..+++.         .+++++|+||++.||      +.+...++++|+++++
T Consensus       161 vlnG~K~~vt~a~~~~~~~ad~~~v~ar~~~~~~~~~~~~~~~~~g~s~~lVp~~~~g~~~~~~~~~~~~~~~~G~~~~~  240 (259)
T d2c12a2         161 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTS  240 (259)
T ss_dssp             EEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCC
T ss_pred             ccceeeeeecCCcccccccceEEEEEEEecCCCccccccccCCCCceEEEEEeCCCCCcccCCCeeecCcccccccccCc
Confidence            999999999998     45889999999865432         246889999988765      4455568999999999


Q ss_pred             eeeEEeceeeeCCCCcccC
Q 023999          238 TCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       238 ~~~v~f~~v~Vp~~~llg~  256 (274)
                      +++|.|+||+||++++||.
T Consensus       241 ~~~v~f~dv~Vp~~~llGt  259 (259)
T d2c12a2         241 GPHTRFTEFHVPHENLLCT  259 (259)
T ss_dssp             CCEEEEEEEEEEGGGBCSC
T ss_pred             eEEEEEeeEEECHHHeeCc
Confidence            9999999999999999984

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.6e-30  Score=221.75  Aligned_cols=216  Identities=17%  Similarity=0.252  Sum_probs=157.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (274)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~  111 (274)
                      ++++. ++++.+++++.+.  |.....+... +.. .+.++.....++.....++++|+.  .+.+...+.+.. ..+.+
T Consensus        26 ~~e~~-~~r~~v~~~i~~d--p~f~~~~~~~-~~~-~e~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~~~-~~~~~   97 (267)
T d2ddha3          26 SPENT-RRRREIENLILND--PDFQHEDYNF-LTR-SQRYEVAVKKSATMVKKMREYGIS--DPEEIMWFKNSV-HRGHP   97 (267)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCSCGGG-SCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH-HTTCC
T ss_pred             CHHHH-HHHHHHHHHHhcC--cccCCccccc-CCH-HHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHhhh-ccCCC
Confidence            45666 7888888887653  2211111111 111 144544444333333334444443  344444444333 33333


Q ss_pred             chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEEee-----Eee
Q 023999          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIING-----NKM  184 (274)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~G-----~k~  184 (274)
                        ..+..|..+....|..+|+++||++|++++++|++.+|+|+|||++|+|+..++|+|++++  +.|+|||     +|.
T Consensus        98 --~~~~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~  175 (267)
T d2ddha3          98 --EPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKW  175 (267)
T ss_dssp             --CTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEE
T ss_pred             --ceehhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeee
Confidence              3345555466677889999999999999999999999999999999999999999999876  5699999     699


Q ss_pred             cccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeC-------CCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999          185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ  256 (274)
Q Consensus       185 ~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~-------~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~  256 (274)
                      |++| +..|++++|+|++.++...+++++|+||.       +.|||++.+.++++|+++++++.+.|+||+||.+++|++
T Consensus       176 wit~~~~~a~~~iv~a~~~~~~~~~G~s~F~V~~~~~~~~~~~pGv~v~~~~~~~G~~~~~~~~i~fd~V~VP~~~lL~~  255 (267)
T d2ddha3         176 WPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMK  255 (267)
T ss_dssp             CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGBCCS
T ss_pred             cCCCCcccCCEEEEeeeccCCCCCCccEEEEEEecCcCccCCCCCeEeccCCCccccCCCceEEEEEeeEEECHHHhCCC
Confidence            9998 68999999999987655566899999994       458999999999999999999999999999999999965


Q ss_pred             C
Q 023999          257 E  257 (274)
Q Consensus       257 ~  257 (274)
                      -
T Consensus       256 ~  256 (267)
T d2ddha3         256 Y  256 (267)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=9.5e-29  Score=211.06  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=154.3

Q ss_pred             CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999           32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS  111 (274)
Q Consensus        32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~  111 (274)
                      ++++. ++++.+++++.+.  |.....+.. .... .+.|....+.+........++   +.+..+...+...+..   +
T Consensus        27 ~ee~~-~~r~~v~~~~~~d--p~f~~~~~~-~~sr-~e~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~---~   95 (271)
T d1w07a3          27 SRHAF-EVSDRIARLVASD--PVFEKSNRA-RLSR-KELFKSTLRKCAHAFKRIIEL---RLNEEEAGRLRHFIDQ---P   95 (271)
T ss_dssp             SHHHH-HHHHHHHHHHHTC--GGGCCTTTT-SSCH-HHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHCC---C
T ss_pred             CHHHH-HHHHHHHHHHhcC--cccCCCCcC-CCCH-HHHHHHHHHHHHHHHHHHHHc---CCChhhhHHHHHHhcc---c
Confidence            46666 8899999998764  222111111 1110 133333222211111111222   2234444443333322   2


Q ss_pred             chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEee-----Eee
Q 023999          112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIING-----NKM  184 (274)
Q Consensus       112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G-----~k~  184 (274)
                        ..+..|..+....|..+|+++||++|||++++|++++|+|+|||++|+|+.+++|+|+++  +++|+|||     +|.
T Consensus        96 --~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~  173 (271)
T d1w07a3          96 --AYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW  173 (271)
T ss_dssp             --CHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEE
T ss_pred             --hHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeee
Confidence              234555556677889999999999999999999999999999999999999999999987  56799999     799


Q ss_pred             cccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEe-------CCCCCeEEeccCcccC---CCCCceeeEEeceeeeCCCCc
Q 023999          185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENV  253 (274)
Q Consensus       185 ~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~l  253 (274)
                      |++| +..|++++|+|+..++.++.++.+|+||       .+.|||++.+..+++|   +++.+++.+.|+||+||.+++
T Consensus       174 wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i~Fd~VrVP~~~l  253 (271)
T d1w07a3         174 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQM  253 (271)
T ss_dssp             CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGB
T ss_pred             ccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEEEEeeEEECHHHc
Confidence            9998 6789999999998766556678999999       4458999988888887   678889999999999999999


Q ss_pred             ccCCC
Q 023999          254 LGQEG  258 (274)
Q Consensus       254 lg~~g  258 (274)
                      ||+.+
T Consensus       254 Lg~~g  258 (271)
T d1w07a3         254 LMRLS  258 (271)
T ss_dssp             CCSSE
T ss_pred             CCCCC
Confidence            99876

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=99.82  E-value=1e-21  Score=167.46  Aligned_cols=130  Identities=15%  Similarity=0.264  Sum_probs=108.9

Q ss_pred             HHHHhcCCH--HHHHHHhHHHhcCCceEEEEeeCCCCCCCCCC--------ceEEEEEeCCeEEEeeEeecccCCCCCCE
Q 023999          125 NQLVRHGSP--AQKDKYLPKLISGEHVGALAMSEPNAGSDVVG--------MKCKADRVDGGYIINGNKMWCTNGPVAQT  194 (274)
Q Consensus       125 ~~l~~~g~~--~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~--------~~~~a~~~~~g~~l~G~k~~vs~~~~a~~  194 (274)
                      .++..++++  +++++|++.+.++++..+.+++||..+++...        ..+.+++++|||+|||.|.|+|++..||+
T Consensus       118 ~~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~~~~~q~~~~~~~~v~~~~~~g~vvnG~K~~~T~a~~ad~  197 (275)
T d1u8va2         118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE  197 (275)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCSE
T ss_pred             HHhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCccChhhccCccceEEEEEecCCEEEEeeEEEEecCCCccce
Confidence            455677876  78899999999999999999999999988653        23567778899999999999999999999


Q ss_pred             EEEEEEeCCCCC-CCCeEEEEEeCCCCCeEEeccCcccCCCCCce---------------eeEEeceeeeCCCCcc
Q 023999          195 LVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT---------------CELVFENCFVPNENVL  254 (274)
Q Consensus       195 ~lv~a~~~~~~~-~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~---------------~~v~f~~v~Vp~~~ll  254 (274)
                      ++|+++....++ .++.++|+||.++||+++...++.+|++.+.+               +.|.|+||+||.++++
T Consensus       198 ~~v~~~~~~~~~~~~~~~~f~Vp~~tpGv~~~~~~~~~~~r~~~~~~~~~~~s~~f~e~da~vvFddV~VP~e~Vf  273 (275)
T d1u8va2         198 HIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF  273 (275)
T ss_dssp             EEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEE
T ss_pred             EEEEeccCCCCCCCCcEEEEEEeCCCCCeEEecccCCcCCcccCCCCCccccccccCCceeEEEeceEECcHHHee
Confidence            999998754433 34677899999999999988888888775443               4599999999998875